sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | samtools 1.13-2 (s390x) Thu, 09 Sep 2021 00:59:08 +0000 | +==============================================================================+ Package: samtools Version: 1.13-2 Source Version: 1.13-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5c51288b-c616-4a16-80ad-c1eaea8a4f53' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-bPVmy9/resolver-8gVWUY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-08-2003.45-F-2021-09-08-0806.57.pdiff [26.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-08-2003.45-F-2021-09-08-0806.57.pdiff [26.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-08-2003.45-F-2021-09-08-0806.57.pdiff [59.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-08-2003.45-F-2021-09-08-0806.57.pdiff [59.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8395 kB] Fetched 8772 kB in 4s (2321 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4573 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (dsc) [2290 B] Get:2 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (tar) [4550 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (diff) [20.6 kB] Fetched 4573 kB in 0s (99.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-bPVmy9/samtools-1.13' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-bPVmy9' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bash-completion, libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), bash-completion, libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [499 B] Get:5 copy:/<>/apt_archive ./ Packages [570 B] Fetched 2026 B in 0s (82.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libhtscodecs2:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses-dev:s390x libncurses5-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libperl5.32 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rpcsvc-proto sensible-utils tabix:s390x ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x glibc-doc manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn11-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x gnupg git bzr gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x ncurses-doc:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:s390x ca-certificates:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:s390x libldap-common:s390x libgpm2:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libhtscodecs2:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses-dev:s390x libncurses5-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libperl5.32 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:s390x sensible-utils tabix:s390x ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 218 MB of archives. After this operation, 916 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-2 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf-archive all 20210219-1 [767 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-11-base s390x 11.2.0-4 [205 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.4.0-2+b1 [200 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 bash-completion all 1:2.11-3 [234 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-1 [819 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.37-5 [2069 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-2 [2255 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.3.0-9 [1750 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.3.0-9 [9434 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.3.0-8cross1 [205 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.3.0-8cross1 [41.1 MB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.32-1cross4 [1236 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 11.2.0-2cross1 [24.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 11.2.0-2cross1 [94.7 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 11.2.0-2cross1 [24.8 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 11.2.0-2cross1 [7912 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 11.2.0-2cross1 [2001 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 11.2.0-2cross1 [529 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 11.2.0-2cross1 [806 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.3.0-8cross1 [658 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.3.0-8cross1 [46.3 MB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.1-1 [1456 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.10.46-4cross4 [1467 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.32-1cross4 [1856 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.3.0-8cross1 [1693 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.3.0-8cross1 [44.2 MB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.1-1 [1176 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-3 [696 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.1 [192 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.1 [1056 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 11.2.0-4 [24.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.32-2 [2456 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.4.0-2+b1 [2552 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 11.2.0-4 [8060 B] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libbrotli1 s390x 1.0.9-2+b2 [275 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-4 [45.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.10.46-4 [1361 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.25-2 [89.6 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.25-2 [105 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.46.4-1 [75.1 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-7 [64.6 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-7 [112 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1l-1 [1217 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-7 [341 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-7 [154 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.3.2-2 [78.0 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.3.2-2 [185 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.32-2 [1881 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-dev s390x 1.0.8-4 [30.2 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.2.1+dfsg-1 [552 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libnettle8 s390x 3.7.3-1 [277 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed6 s390x 3.7.3-1 [318 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-6 [385 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.3.2-2 [94.2 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libffi7 s390x 3.3-6 [20.1 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.24.0-2 [341 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.17.0-2 [53.2 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.7.2-2 [1237 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.8 [618 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2.1 [68.2 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-2.1 [103 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.59+dfsg-1 [221 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.43.0-1 [72.4 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.21.0-1.2 [57.1 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.9.0-3 [159 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.74.0-1.3+b1 [315 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libcurl4-gnutls-dev s390x 7.74.0-1.3+b1 [412 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.7-2 [46.3 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate-dev s390x 1.7-2 [42.1 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 11.2.0-4 [96.8 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 11.2.0-4 [25.2 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 11.2.0-4 [569 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 11.2.0-4 [805 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.4.0-2+b1 [680 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.68.4-1 [1390 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main s390x libhtscodecs2 s390x 1.1.1-2 [54.6 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.5-2 [167 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main s390x libhts3 s390x 1.13+ds-2 [362 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.5-2 [228 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main s390x libhts-dev s390x 1.13+ds-2 [4102 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main s390x libtinfo6 s390x 6.2+20201114-4 [336 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main s390x libncurses6 s390x 6.2+20201114-4 [94.9 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main s390x libncursesw6 s390x 6.2+20201114-4 [120 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main s390x libncurses-dev s390x 6.2+20201114-4 [319 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main s390x libncurses5-dev s390x 6.2+20201114-4 [940 B] Get:151 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.4.0-2+b1 [1682 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main s390x tabix s390x 1.13+ds-2 [321 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 218 MB in 2s (104 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10515 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-2_amd64.deb ... Unpacking bsdextrautils (2.37.2-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-5) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-5_amd64.deb ... Unpacking perl (5.32.1-5) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../008-autoconf-archive_20210219-1_all.deb ... Unpacking autoconf-archive (20210219-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../009-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:s390x. Preparing to unpack .../010-gcc-11-base_11.2.0-4_s390x.deb ... Unpacking gcc-11-base:s390x (11.2.0-4) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../011-gcc-9-base_9.4.0-2+b1_s390x.deb ... Unpacking gcc-9-base:s390x (9.4.0-2+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../012-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package bash-completion. Preparing to unpack .../013-bash-completion_1%3a2.11-3_all.deb ... Unpacking bash-completion (1:2.11-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../015-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../018-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../019-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../020-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../022-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../023-automake_1%3a1.16.4-1_all.deb ... Unpacking automake (1:1.16.4-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../024-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../025-binutils-s390x-linux-gnu_2.37-5_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.37-5) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../026-libcrypt-dev_1%3a4.4.25-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../027-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../028-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../029-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../030-libc6-dev_2.32-2_amd64.deb ... Unpacking libc6-dev:amd64 (2.32-2) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../031-libstdc++-10-dev_10.3.0-9_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.3.0-9) ... Selecting previously unselected package g++-10. Preparing to unpack .../032-g++-10_10.3.0-9_amd64.deb ... Unpacking g++-10 (10.3.0-9) ... Selecting previously unselected package g++. Preparing to unpack .../033-g++_4%3a10.2.1-1_amd64.deb ... Unpacking g++ (4:10.2.1-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../034-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../035-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../036-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-10-s390x-linux-gnu-base:amd64. Preparing to unpack .../037-gcc-10-s390x-linux-gnu-base_10.3.0-8cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu-base:amd64 (10.3.0-8cross1) ... Selecting previously unselected package cpp-10-s390x-linux-gnu. Preparing to unpack .../038-cpp-10-s390x-linux-gnu_10.3.0-8cross1_amd64.deb ... Unpacking cpp-10-s390x-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../039-cpp-s390x-linux-gnu_4%3a10.2.1-1_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../040-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../041-gcc-10-cross-base_10.3.0-8cross1_all.deb ... Unpacking gcc-10-cross-base (10.3.0-8cross1) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../042-gcc-11-cross-base_11.2.0-2cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-2cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../043-libc6-s390x-cross_2.32-1cross4_all.deb ... Unpacking libc6-s390x-cross (2.32-1cross4) ... Selecting previously unselected package libgcc-s1-s390x-cross. Preparing to unpack .../044-libgcc-s1-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libgcc-s1-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../045-libgomp1-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libgomp1-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../046-libitm1-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libitm1-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libatomic1-s390x-cross. Preparing to unpack .../047-libatomic1-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libatomic1-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libasan6-s390x-cross. Preparing to unpack .../048-libasan6-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libasan6-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libstdc++6-s390x-cross. Preparing to unpack .../049-libstdc++6-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libstdc++6-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libubsan1-s390x-cross. Preparing to unpack .../050-libubsan1-s390x-cross_11.2.0-2cross1_all.deb ... Unpacking libubsan1-s390x-cross (11.2.0-2cross1) ... Selecting previously unselected package libgcc-10-dev-s390x-cross. Preparing to unpack .../051-libgcc-10-dev-s390x-cross_10.3.0-8cross1_all.deb ... Unpacking libgcc-10-dev-s390x-cross (10.3.0-8cross1) ... Selecting previously unselected package gcc-10-s390x-linux-gnu. Preparing to unpack .../052-gcc-10-s390x-linux-gnu_10.3.0-8cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../053-gcc-s390x-linux-gnu_4%3a10.2.1-1_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../054-linux-libc-dev-s390x-cross_5.10.46-4cross4_all.deb ... Unpacking linux-libc-dev-s390x-cross (5.10.46-4cross4) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../055-libc6-dev-s390x-cross_2.32-1cross4_all.deb ... Unpacking libc6-dev-s390x-cross (2.32-1cross4) ... Selecting previously unselected package libstdc++-10-dev-s390x-cross. Preparing to unpack .../056-libstdc++-10-dev-s390x-cross_10.3.0-8cross1_all.deb ... Unpacking libstdc++-10-dev-s390x-cross (10.3.0-8cross1) ... Selecting previously unselected package g++-10-s390x-linux-gnu. Preparing to unpack .../057-g++-10-s390x-linux-gnu_10.3.0-8cross1_amd64.deb ... Unpacking g++-10-s390x-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../058-g++-s390x-linux-gnu_4%3a10.2.1-1_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../059-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../060-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../061-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../062-libxml2_2.9.12+dfsg-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../063-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../064-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../065-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../066-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../067-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. 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Preparing to unpack .../150-pkg-config_0.29.2-1_amd64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package tabix:s390x. Preparing to unpack .../151-tabix_1.13+ds-2_s390x.deb ... Unpacking tabix:s390x (1.13+ds-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../152-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up gcc-11-base:s390x (11.2.0-4) ... Setting up binutils-s390x-linux-gnu (2.37-5) ... Setting up bsdextrautils (2.37.2-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.68.4-1) ... No schema files found: doing nothing. Setting up perl-modules-5.32 (5.32.1-5) ... Setting up libc6-s390x-cross (2.32-1cross4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:s390x (5.10.46-4) ... Setting up gettext-base (0.21-4) ... Setting up autoconf-archive (20210219-1) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (5.10.46-4cross4) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up bash-completion (1:2.11-3) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-10-cross-base (10.3.0-8cross1) ... Setting up gcc-11-cross-base (11.2.0-2cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libc6-dev-s390x-cross (2.32-1cross4) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-2) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libgomp1-s390x-cross (11.2.0-2cross1) ... Setting up libxml2:amd64 (2.9.12+dfsg-3) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.3.0-8cross1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:s390x (9.4.0-2+b1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-9) ... Setting up g++-10 (10.3.0-9) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-s390x-cross (11.2.0-2cross1) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-5) ... Setting up libgcc-s1-s390x-cross (11.2.0-2cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libitm1-s390x-cross (11.2.0-2cross1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up cpp-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.4-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up cpp-s390x-linux-gnu (4:10.2.1-1) ... Setting up libstdc++6-s390x-cross (11.2.0-2cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (11.2.0-2cross1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libubsan1-s390x-cross (11.2.0-2cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.3.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.3.0-8cross1) ... Setting up debhelper (13.5.1) ... Setting up gcc-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up g++-s390x-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (11.2.0-4) ... Setting up libc6:s390x (2.32-2) ... Setting up libtasn1-6:s390x (4.17.0-2) ... Setting up libbz2-1.0:s390x (1.0.8-4) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:s390x (11.2.0-4) ... Setting up libitm1:s390x (11.2.0-4) ... Setting up libtinfo6:s390x (6.2+20201114-4) ... Setting up libhtscodecs2:s390x (1.1.1-2) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up liblzma5:s390x (5.2.5-2) ... Setting up libssl1.1:s390x (1.1.1l-1) ... Setting up libbrotli1:s390x (1.0.9-2+b2) ... Setting up libffi7:s390x (3.3-6) ... Setting up libnghttp2-14:s390x (1.43.0-1) ... Setting up libunistring2:s390x (0.9.10-6) ... Setting up libdeflate0:s390x (1.7-2) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libcrypt1:s390x (1:4.4.25-2) ... Setting up libidn2-0:s390x (2.3.2-2) ... Setting up libcom-err2:s390x (1.46.4-1) ... Setting up libgomp1:s390x (11.2.0-4) ... Setting up libkrb5support0:s390x (1.18.3-7) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2.1) ... Setting up libasan5:s390x (9.4.0-2+b1) ... Setting up libnettle8:s390x (3.7.3-1) ... Setting up libgmp10:s390x (2:6.2.1+dfsg-1) ... Setting up libncurses6:s390x (6.2+20201114-4) ... Setting up libp11-kit0:s390x (0.24.0-2) ... Setting up libatomic1:s390x (11.2.0-4) ... Setting up libncursesw6:s390x (6.2+20201114-4) ... Setting up libk5crypto3:s390x (1.18.3-7) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:s390x (5.2.5-2) ... Setting up libubsan1:s390x (11.2.0-4) ... Setting up libcrypt-dev:s390x (1:4.4.25-2) ... Setting up libssh2-1:s390x (1.9.0-3) ... Setting up libkrb5-3:s390x (1.18.3-7) ... Setting up libdeflate-dev:s390x (1.7-2) ... Setting up tabix:s390x (1.13+ds-2) ... Setting up libpsl5:s390x (0.21.0-1.2) ... Setting up libhogweed6:s390x (3.7.3-1) ... Setting up libgcc-9-dev:s390x (9.4.0-2+b1) ... Setting up libgnutls30:s390x (3.7.2-2) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.18.3-7) ... Setting up libtirpc3:s390x (1.3.2-2) ... Setting up libldap-2.4-2:s390x (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:s390x (7.74.0-1.3+b1) ... Setting up libtirpc-dev:s390x (1.3.2-2) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libhts3:s390x (1.13+ds-2) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.32-2) ... Setting up libbz2-dev:s390x (1.0.8-4) ... Setting up libncurses-dev:s390x (6.2+20201114-4) ... Setting up libstdc++-9-dev:s390x (9.4.0-2+b1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libncurses5-dev:s390x (6.2+20201114-4) ... Setting up libhts-dev:s390x (1.13+ds-2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.32-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-5 dpkg-dev_1.20.9 g++-10_10.3.0-9 gcc-10_10.3.0-9 libc6-dev_2.32-2 libstdc++-10-dev_10.3.0-9 libstdc++-10-dev-s390x-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-2+b1 libstdc++6_11.2.0-4 libstdc++6-s390x-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 autoconf-archive_20210219-1 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.51 bash_5.1-3+b1 bash-completion_1:2.11-3 binutils_2.37-5 binutils-common_2.37-5 binutils-s390x-linux-gnu_2.37-5 binutils-x86-64-linux-gnu_2.37-5 bsdextrautils_2.37.2-2 bsdutils_1:2.37.2-2 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.3.0-9 cpp-10-s390x-linux-gnu_10.3.0-8cross1 cpp-8_8.4.0-7 cpp-s390x-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu2 crossbuild-essential-s390x_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.1 debian-archive-keyring_2021.1.1 debianutils_5.4-3 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-2 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.3.0-9 g++-10-s390x-linux-gnu_10.3.0-8cross1 g++-s390x-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.3.0-9 gcc-10-base_10.3.0-9 gcc-10-cross-base_10.3.0-8cross1 gcc-10-s390x-linux-gnu_10.3.0-8cross1 gcc-10-s390x-linux-gnu-base_10.3.0-8cross1 gcc-11-base_11.2.0-4 gcc-11-cross-base_11.2.0-2cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-2+b1 gcc-s390x-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan5_9.4.0-2+b1 libasan6_11.2.0-4 libasan6-s390x-cross_11.2.0-2cross1 libatomic1_11.2.0-4 libatomic1-s390x-cross_11.2.0-2cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5 libblkid1_2.37.2-2 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-2 libc-dev-bin_2.32-2 libc6_2.32-2 libc6-dev_2.32-2 libc6-dev-s390x-cross_2.32-1cross4 libc6-s390x-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5 libctf0_2.37-5 libcurl3-gnutls_7.74.0-1.3+b1 libcurl4-gnutls-dev_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.7-2 libdeflate0_1.7-2 libdpkg-perl_1.20.9 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-2 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.3.0-9 libgcc-10-dev-s390x-cross_10.3.0-8cross1 libgcc-9-dev_9.4.0-2+b1 libgcc-s1_11.2.0-4 libgcc-s1-s390x-cross_11.2.0-2cross1 libgcrypt20_1.9.4-2 libgdbm-compat4_1.20-1 libgdbm6_1.20-1 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.2-2 libgomp1_11.2.0-4 libgomp1-s390x-cross_11.2.0-2cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-2 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_11.2.0-4 libitm1-s390x-cross_11.2.0-2cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-4 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-4 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-2 libss2_1.46.4-1 libssh2-1_1.9.0-3 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9 libstdc++-10-dev-s390x-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-2+b1 libstdc++6_11.2.0-4 libstdc++6-s390x-cross_11.2.0-2cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-4 libubsan1_11.2.0-4 libubsan1-s390x-cross_11.2.0-2cross1 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.37.2-2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-3 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 linux-libc-dev-s390x-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-2 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-5 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tabix_1.13+ds-2 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.37.2-2 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.13-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 13), bash-completion, libio-pty-perl , libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 2bdca112372c85b9438213832c8531e7bf28c1fb 4550467 samtools_1.13.orig.tar.gz 83d77dce5c46721c7e15686aa06f5a57f910f46a 20600 samtools_1.13-2.debian.tar.xz Checksums-Sha256: 21621a2dd6f31b00c9184d31566e73a1c7fc0c1c2de62db125848fbdbc81448f 4550467 samtools_1.13.orig.tar.gz c032291accc4201d51dbffd3af6fba038522fc9102b6558de1700fcbd4920842 20600 samtools_1.13-2.debian.tar.xz Files: d6042c95145b32c044a3874ee6b0d026 4550467 samtools_1.13.orig.tar.gz 51058b7f72bb9ce3f16b510b17e280d2 20600 samtools_1.13-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmEs7L4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHLJw/+Nv1NNL6DTwotQg3fewjVn0nPCYldOX7w DDbpYEWVumNPiqm8T5mYXEu11VHpUm1anBBSM10qngQywJQCML+CwZRSDMjS4q+E muQL2CEMuoBtJmwVPcK/CsZR3e1+Qq0mBziwCFxLWzIpwD2vcY2bwMPdyB3RQBRL WTcuwOHr01QQ7/nb5s8xyC1KL8pO123WEW07ax13htVueqPTaGMLcqDqXntKOFFt FsLY+QDTFVrgvPPE6ZucLDgvPb2RhI4SN7hIzpQ3Z4dP/+Rxu+TP4OndrmcNfqnh CB7ZOnXpxDNT7b9un5dZ6iqkpBG94SQK7hLdCYmfdtBzXIdQXERAGk3rDoALfBMq qcN2onBb34jLTnHn1ZOp7pyODzlOyCRssa5nbTnV6ontOilXZ3zN15CjUS2SZGaM kFcT/5ZuB2RtgHcqox+pkG2lBdnQl4+EYd8b/pJqedLBVqTB0BC8AJpSl07Phwsd yMBHuMp84urpX5g9nmjRqCqMbYMHwSNknzSkmXI6cnuglY/HrBjWwNmWynGYAnMs oKIxYl7A2BNOP4EuVQT5LVuMyarQR1jfl/d9v9izOPTaNxqYR6Ed39kW/lW7uW9B 2CmITHsI3+2RIbLv867UbNApSd0V4zMI4htaT+W8ngAxdcNInE2BTYQNwrZaq0sO nk84NMEEdH0= =fmet -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.wsD15Daz/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 30 14:35:42 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./samtools_1.13-2.dsc dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.13.orig.tar.gz dpkg-source: info: unpacking samtools_1.13-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5c51288b-c616-4a16-80ad-c1eaea8a4f53 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.13-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from samtools-1.13/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- install -d /<>/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level dh_auto_configure -- --with-htslib=system install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for gawk... no checking for mawk... mawk checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.13"' > version.h echo '#define SAMTOOLS_CC "s390x-linux-gnu-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/<>@«BUILDPATH»@g' version.h s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_ampliconclip.o bam_ampliconclip.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o amplicon_stats.o amplicon_stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -csru libbam.a bam_aux.o bam.o sam.o bam_plbuf.o ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o bam2bcf_indel.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o ./lz4/lz4.o libbam.a libst.a -lhts -lcurses -lm -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DMAQ_LONGREADS -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- \ prefix=/usr install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/share/man/man1 install -p samtools /<>/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /<>/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /<>/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /<>/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/<>' make clean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ install -d debian/.debhelper/generated/samtools install -d debian/.debhelper/generated/samtools-test # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a install -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 debian/NEWS debian/samtools/usr/share/doc/samtools/NEWS.Debian install -p -m0644 NEWS debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/<>' dh_installexamples -a install -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconclip.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-coverage.1.dh-new debian/samtools/usr/share/man/man1/samtools-coverage.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-import.1.dh-new debian/samtools/usr/share/man/man1/samtools-import.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a (grep -a -s -v perl:Depends debian/samtools.substvars; echo perl:Depends=perl:any) > debian/samtools.substvars.new mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_strip_nondeterminism -a Using 1630333957 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/<>' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_fixperms -a find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a -a install -d debian/samtools/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/samtools/usr/lib/debug/.dwz/s390x-linux-gnu/samtools.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/samtools.debug -- debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/samtools debian/samtools/usr/bin/wgsim dwz: debian/samtools/usr/bin/samtools: DWARF compression not beneficial - old size 677400 new size 699193 s390x-linux-gnu-objcopy --compress-debug-sections debian/samtools/usr/lib/debug/.dwz/s390x-linux-gnu/samtools.debug dh_strip -a -a install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f5 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f5/d6f51d3114117ee25ef47dc60e3ce4f1370164.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f5/d6f51d3114117ee25ef47dc60e3ce4f1370164.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f5/d6f51d3114117ee25ef47dc60e3ce4f1370164.debug debian/samtools/usr/bin/wgsim install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3c s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3c/b932e45fa8707ecc9a1a610c396ff039775aec.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3c/b932e45fa8707ecc9a1a610c396ff039775aec.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3c/b932e45fa8707ecc9a1a610c396ff039775aec.debug debian/samtools/usr/bin/md5sum-lite install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d3 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d3/2c22e0902b1f6833342784e61dcbda2aa4b771.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d3/2c22e0902b1f6833342784e61dcbda2aa4b771.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d3/2c22e0902b1f6833342784e61dcbda2aa4b771.debug debian/samtools/usr/bin/md5fa install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a3 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a3/0b407d7f964747b3285d69431dd95fa006d811.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a3/0b407d7f964747b3285d69431dd95fa006d811.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a3/0b407d7f964747b3285d69431dd95fa006d811.debug debian/samtools/usr/bin/maq2sam-short install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/00 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/00/1be165e8de4406189291f257b02fb9a820bcd8.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/00/1be165e8de4406189291f257b02fb9a820bcd8.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/00/1be165e8de4406189291f257b02fb9a820bcd8.debug debian/samtools/usr/bin/maq2sam-long install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/2b s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/2b/31ef1446b2af2899dbd57716c09455fddd9344.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/2b/31ef1446b2af2899dbd57716c09455fddd9344.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/2b/31ef1446b2af2899dbd57716c09455fddd9344.debug debian/samtools/usr/bin/ace2sam install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8c s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8c/f893dd5623ecd00ecb7850d74ad8dda235c092.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8c/f893dd5623ecd00ecb7850d74ad8dda235c092.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8c/f893dd5623ecd00ecb7850d74ad8dda235c092.debug debian/samtools/usr/bin/samtools install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/samtools/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/samtools/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/samtools/usr/lib/debug install -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym dh_makeshlibs -a -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a -a install -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars debian/samtools/usr/bin/wgsim debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/samtools dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/samtools.substvars echo misc:Pre-Depends= >> debian/samtools.substvars install -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=samtools-dbgsym "-DDepends=samtools (= \${binary:Version})" "-DDescription=debug symbols for samtools" "-DBuild-Ids=001be165e8de4406189291f257b02fb9a820bcd8 2b31ef1446b2af2899dbd57716c09455fddd9344 3cb932e45fa8707ecc9a1a610c396ff039775aec 8cf893dd5623ecd00ecb7850d74ad8dda235c092 a30b407d7f964747b3285d69431dd95fa006d811 d32c22e0902b1f6833342784e61dcbda2aa4b771 f5d6f51d3114117ee25ef47dc60e3ce4f1370164" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/samtools dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/samtools/DEBIAN/control dh_md5sums -a cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.13-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.13-2_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../samtools_1.13-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from samtools-1.13/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-09-09T01:00:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools_1.13-2_s390x.changes: ------------------------------ Format: 1.8 Date: Mon, 30 Aug 2021 16:32:37 +0200 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.13-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Closes: 993304 Changes: samtools (1.13-2) unstable; urgency=medium . [ Étienne Mollier ] * d/control: bump B-D libhts-dev (>= 1.13~); builds otherwise break against older htslib versions. . [ Andreas Tille ] * make the build reproducible (Thanks for the patch to Chris Lamb) Closes: #993304 Checksums-Sha1: 3f880e5e91b3a90da6a5f1c1b549daa84d2a3d67 867312 samtools-dbgsym_1.13-2_s390x.deb a62ba04f0309ebba878f3664f4d54f2e6e07c4d1 5834 samtools_1.13-2_s390x.buildinfo ad6b76cf92b0cb5b6fcf41c43b21f8216d1509b7 547060 samtools_1.13-2_s390x.deb Checksums-Sha256: 86e19c1dfb9ed32255a6d5704e0c888160029d8c47341f1a1d13fe07f7a64e90 867312 samtools-dbgsym_1.13-2_s390x.deb b59c7b7c38fb2570231399f997f5b453ac06082be0f2674a7b597dae6f2ad25e 5834 samtools_1.13-2_s390x.buildinfo b98c9e3883f2bdbddbe8d0c74354a43f36571cb3a0fdabe683f1ca9f157b90e7 547060 samtools_1.13-2_s390x.deb Files: f4b7f11b25b30318ef269d61419a519e 867312 debug optional samtools-dbgsym_1.13-2_s390x.deb 73cebfd2b78c0ada73cef86a6fc06676 5834 science optional samtools_1.13-2_s390x.buildinfo 5ad76ae7ef8d399935c21ea0da8a751c 547060 science optional samtools_1.13-2_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-dbgsym Architecture: s390x Version: 1.13-2 Checksums-Md5: f4b7f11b25b30318ef269d61419a519e 867312 samtools-dbgsym_1.13-2_s390x.deb 5ad76ae7ef8d399935c21ea0da8a751c 547060 samtools_1.13-2_s390x.deb Checksums-Sha1: 3f880e5e91b3a90da6a5f1c1b549daa84d2a3d67 867312 samtools-dbgsym_1.13-2_s390x.deb ad6b76cf92b0cb5b6fcf41c43b21f8216d1509b7 547060 samtools_1.13-2_s390x.deb Checksums-Sha256: 86e19c1dfb9ed32255a6d5704e0c888160029d8c47341f1a1d13fe07f7a64e90 867312 samtools-dbgsym_1.13-2_s390x.deb b98c9e3883f2bdbddbe8d0c74354a43f36571cb3a0fdabe683f1ca9f157b90e7 547060 samtools_1.13-2_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 09 Sep 2021 01:00:48 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), autoconf-archive (= 20210219-1), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.51), bash (= 5.1-3+b1), bash-completion (= 1:2.11-3), binutils (= 2.37-5), binutils-common (= 2.37-5), binutils-x86-64-linux-gnu (= 2.37-5), bsdextrautils (= 2.37.2-2), bsdutils (= 1:2.37.2-2), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.3.0-9), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.1), debianutils (= 5.4-3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.3.0-9), gcc (= 4:10.2.1-1), gcc-10 (= 10.3.0-9), gcc-10-base (= 10.3.0-9), gcc-11-base (= 11.2.0-4), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-4), libatomic1 (= 11.2.0-4), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbinutils (= 2.37-5), libblkid1 (= 2.37.2-2), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.32-2), libc-dev-bin (= 2.32-2), libc6 (= 2.32-2), libc6-dev (= 2.32-2), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-4), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-5), libctf0 (= 2.37-5), libcurl3-gnutls (= 7.74.0-1.3+b1), libcurl4-gnutls-dev (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.1), libdeflate-dev (= 1.7-2), libdeflate0 (= 1.7-2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.3.0-9), libgcc-s1 (= 11.2.0-4), libgcrypt20 (= 1.9.4-2), libgdbm-compat4 (= 1.20-1), libgdbm6 (= 1.20-1), libglib2.0-0 (= 2.68.4-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.2-2), libgomp1 (= 11.2.0-4), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libhts-dev (= 1.13+ds-2), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.1.1-2), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-4), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libldap-2.4-2 (= 2.4.59+dfsg-1), liblsan0 (= 11.2.0-4), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses-dev (= 6.2+20201114-4), libncurses5-dev (= 6.2+20201114-4), libncurses6 (= 6.2+20201114-4), libncursesw6 (= 6.2+20201114-4), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-2), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.2.0-4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.2-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-2), libssh2-1 (= 1.9.0-3), libssl1.1 (= 1.1.1l-1), libstdc++-10-dev (= 10.3.0-9), libstdc++6 (= 11.2.0-4), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20201114-4), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-4), libubsan1 (= 11.2.0-4), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-2), libxml2 (= 2.9.12+dfsg-3), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-4), ncurses-bin (= 6.2+20201114-4), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7), tabix (= 1.13+ds-2), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-2), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1630333957" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ samtools-dbgsym_1.13-2_s390x.deb -------------------------------- new Debian package, version 2.0. size 867312 bytes: control archive=892 bytes. 618 bytes, 12 lines control 826 bytes, 8 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.13-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 939 Depends: samtools (= 1.13-2) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 001be165e8de4406189291f257b02fb9a820bcd8 2b31ef1446b2af2899dbd57716c09455fddd9344 3cb932e45fa8707ecc9a1a610c396ff039775aec 8cf893dd5623ecd00ecb7850d74ad8dda235c092 a30b407d7f964747b3285d69431dd95fa006d811 d32c22e0902b1f6833342784e61dcbda2aa4b771 f5d6f51d3114117ee25ef47dc60e3ce4f1370164 drwxr-xr-x root/root 0 2021-08-30 14:32 ./ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/lib/debug/ drwxr-xr-x root/root 0 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root/root 0 2021-08-30 14:32 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 11568 2021-08-30 14:32 ./usr/lib/debug/.build-id/d3/2c22e0902b1f6833342784e61dcbda2aa4b771.debug drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 23392 2021-08-30 14:32 ./usr/lib/debug/.build-id/f5/d6f51d3114117ee25ef47dc60e3ce4f1370164.debug drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 3512 2021-08-30 14:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/samtools.debug drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/share/ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-30 14:32 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.13-2_s390x.deb ------------------------- new Debian package, version 2.0. size 547060 bytes: control archive=2824 bytes. 890 bytes, 18 lines control 5227 bytes, 77 lines md5sums Package: samtools Version: 1.13-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1275 Depends: libc6 (>= 2.29), libhts3 (>= 1.13), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4) Suggests: cwltool Breaks: bio-tradis (<= 1.4.5+dfsg-1), iva (<= 1.0.9+ds-6) Section: science Priority: optional Homepage: https://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. drwxr-xr-x root/root 0 2021-08-30 14:32 ./ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/ drwxr-xr-x root/root 0 2021-08-30 14:32 ./usr/bin/ -rwxr-xr-x root/root 22600 2021-08-30 14:32 ./usr/bin/ace2sam -rwxr-xr-x root/root 5443 2021-08-30 14:32 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2021-08-30 14:32 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2021-08-30 14:32 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 3300 2021-08-30 14:32 ./usr/bin/fasta-sanitize.pl -rwxr-xr-x root/root 6121 2021-08-30 14:32 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 10312 2021-08-30 14:32 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 10312 2021-08-30 14:32 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 14408 2021-08-30 14:32 ./usr/bin/md5fa -rwxr-xr-x root/root 10312 2021-08-30 14:32 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2021-08-30 14:32 ./usr/bin/novo2sam.pl -rwxr-xr-x 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./usr/share/man/man1/samtools-fasta.1.gz lrwxrwxrwx root/root 0 2021-08-30 14:32 ./usr/share/man/man1/samtools-fastq.1.gz -> samtools-fasta.1.gz -rw-r--r-- root/root 1523 2021-08-30 14:32 ./usr/share/man/man1/samtools-fixmate.1.gz -rw-r--r-- root/root 1495 2021-08-30 14:32 ./usr/share/man/man1/samtools-flags.1.gz -rw-r--r-- root/root 2603 2021-08-30 14:32 ./usr/share/man/man1/samtools-flagstat.1.gz -rw-r--r-- root/root 2132 2021-08-30 14:32 ./usr/share/man/man1/samtools-fqidx.1.gz -rw-r--r-- root/root 1410 2021-08-30 14:32 ./usr/share/man/man1/samtools-idxstats.1.gz -rw-r--r-- root/root 3326 2021-08-30 14:32 ./usr/share/man/man1/samtools-import.1.gz -rw-r--r-- root/root 1713 2021-08-30 14:32 ./usr/share/man/man1/samtools-index.1.gz -rw-r--r-- root/root 3079 2021-08-30 14:32 ./usr/share/man/man1/samtools-markdup.1.gz -rw-r--r-- root/root 3026 2021-08-30 14:32 ./usr/share/man/man1/samtools-merge.1.gz -rw-r--r-- root/root 6374 2021-08-30 14:32 ./usr/share/man/man1/samtools-mpileup.1.gz -rw-r--r-- root/root 1422 2021-08-30 14:32 ./usr/share/man/man1/samtools-phase.1.gz -rw-r--r-- root/root 1675 2021-08-30 14:32 ./usr/share/man/man1/samtools-quickcheck.1.gz -rw-r--r-- root/root 1954 2021-08-30 14:32 ./usr/share/man/man1/samtools-reheader.1.gz -rw-r--r-- root/root 1467 2021-08-30 14:32 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 3484 2021-08-30 14:32 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 1640 2021-08-30 14:32 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 6197 2021-08-30 14:32 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1424 2021-08-30 14:32 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 1627 2021-08-30 14:32 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 5554 2021-08-30 14:32 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 14017 2021-08-30 14:32 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2021-08-30 14:32 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2021-08-30 14:32 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [633 B] Get:5 copy:/<>/apt_archive ./ Packages [702 B] Fetched 2298 B in 0s (91.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7584 kB of archives. After this operation, 21.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.26-1 [16.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.26-1 [129 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-2 [60.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.611-1 [45.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.105.0 [1331 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7584 kB in 0s (27.0 MB/s) Selecting previously unselected package diffstat. (Reading database ... 23370 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../06-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../07-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../08-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../09-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../10-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.105.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-2) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 25908 Build-Time: 51 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 38 Job: samtools_1.13-2 Lintian: pass Machine Architecture: amd64 Package: samtools Package-Time: 101 Source-Version: 1.13-2 Space: 25908 Status: successful Version: 1.13-2 -------------------------------------------------------------------------------- Finished at 2021-09-09T01:00:49Z Build needed 00:01:41, 25908k disk space