sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | samtools 1.17-1 (i386) Fri, 30 Jun 2023 06:43:06 +0000 | +==============================================================================+ Package: samtools Version: 1.17-1 Source Version: 1.17-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.RNcAlzGNiL... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-CxnMMc/resolver-8WcCcn' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [199 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.2 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9355 kB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9383 kB] Fetched 29.1 MB in 8s (3529 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser binutils binutils-aarch64-linux-gnu binutils-common libbinutils libctf-nobfd0 libctf0 libgprofng0 libsystemd0 libudev1 libzstd1 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7574 kB of archives. After this operation, 96.3 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 adduser all 3.137 [140 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libzstd1 arm64 1.5.5+dfsg2-1 [255 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 253-4 [314 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 253-4 [107 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.40.50.20230625-1 [688 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.40.50.20230625-1 [79.4 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.40.50.20230625-1 [144 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.40.50.20230625-1 [2657 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.40.50.20230625-1 [660 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.40.50.20230625-1 [79.5 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.40.50.20230625-1 [2451 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7574 kB in 0s (62.5 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10817 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.40.50.20230625-1_arm64.deb ... Unpacking libgprofng0:arm64 (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../1-libctf0_2.40.50.20230625-1_arm64.deb ... Unpacking libctf0:arm64 (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../2-libctf-nobfd0_2.40.50.20230625-1_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../3-binutils-aarch64-linux-gnu_2.40.50.20230625-1_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../4-libbinutils_2.40.50.20230625-1_arm64.deb ... Unpacking libbinutils:arm64 (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../5-binutils_2.40.50.20230625-1_arm64.deb ... Unpacking binutils (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Preparing to unpack .../6-binutils-common_2.40.50.20230625-1_arm64.deb ... Unpacking binutils-common:arm64 (2.40.50.20230625-1) over (2.40.50.20230622-1) ... Setting up binutils-common:arm64 (2.40.50.20230625-1) ... Setting up libctf-nobfd0:arm64 (2.40.50.20230625-1) ... Setting up libbinutils:arm64 (2.40.50.20230625-1) ... Setting up libctf0:arm64 (2.40.50.20230625-1) ... Setting up libgprofng0:arm64 (2.40.50.20230625-1) ... Setting up binutils-aarch64-linux-gnu (2.40.50.20230625-1) ... Setting up binutils (2.40.50.20230625-1) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5485 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main samtools 1.17-1 (dsc) [2284 B] Get:2 http://mirror.einval.org/debian unstable/main samtools 1.17-1 (tar) [5460 kB] Get:3 http://mirror.einval.org/debian unstable/main samtools 1.17-1 (diff) [22.9 kB] Fetched 5485 kB in 0s (47.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-CxnMMc/samtools-1.17' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-CxnMMc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bash-completion, libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), bash-completion, libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [878 B] Get:5 copy:/<>/apt_archive ./ Packages [893 B] Fetched 2380 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-13-base:i386 gcc-13-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl3-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:i386 libdeflate0:i386 libelf1 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6:i386 libhts-dev:i386 libhts3:i386 libhtscodecs2:i386 libicu72 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libldap-2.5-0:i386 liblocale-gettext-perl liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1 libncurses-dev:i386 libncurses6:i386 libncursesw6:i386 libnettle8:i386 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1:i386 libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtasn1-6:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pkg-config:i386 pkgconf:i386 pkgconf-bin po-debconf sensible-utils tabix:i386 ucf zlib1g:i386 zlib1g-dev:i386 Suggested packages: gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-i686-linux-gnu gcc-12-doc gcc-12-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libcurl4-doc:i386 libgnutls28-dev:i386 libidn-dev:i386 libkrb5-dev:i386 libldap2-dev:i386 librtmp-dev:i386 libssh2-1-dev:i386 gnutls-bin:i386 krb5-doc:i386 krb5-user:i386 liblzma-doc:i386 ncurses-doc:i386 libstdc++-12-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:i386 ca-certificates:i386 libarchive-cpio-perl krb5-locales:i386 libldap-common:i386 libgpm2:i386 publicsuffix:i386 libsasl2-modules:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-13-base:i386 gcc-13-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl3-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:i386 libdeflate0:i386 libelf1 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6:i386 libhts-dev:i386 libhts3:i386 libhtscodecs2:i386 libicu72 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libldap-2.5-0:i386 liblocale-gettext-perl liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1 libncurses-dev:i386 libncurses6:i386 libncursesw6:i386 libnettle8:i386 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1:i386 libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtasn1-6:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pkg-config:i386 pkgconf:i386 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils tabix:i386 ucf zlib1g:i386 zlib1g-dev:i386 0 upgraded, 144 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After this operation, 407 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 autoconf-archive all 20220903-3 [775 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 bash-completion all 1:2.11-6 [234 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu-base arm64 12.3.0-4cross1 [39.8 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 cpp-12-i686-linux-gnu arm64 12.3.0-4cross1 [8842 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:12.3.0-1 [3980 B] Get:24 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.40.50.20230625-1 [2380 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.3.0-4cross1 [35.2 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.1.0-6cross1 [34.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.36-8cross1 [1340 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 13.1.0-6cross1 [65.9 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 13.1.0-6cross1 [129 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 13.1.0-6cross1 [27.1 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 13.1.0-6cross1 [7404 B] Get:33 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 13.1.0-6cross1 [2469 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 13.1.0-6cross1 [701 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 13.1.0-6cross1 [983 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 13.1.0-6cross1 [229 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-i386-cross all 12.3.0-4cross1 [2428 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu arm64 12.3.0-4cross1 [17.6 MB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:12.3.0-1 [1468 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.1.4-1cross1 [1839 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.36-8cross1 [1715 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-i386-cross all 12.3.0-4cross1 [2106 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-12-i686-linux-gnu arm64 12.3.0-4cross1 [9675 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:12.3.0-1 [1168 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:66 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 gcc-12-base i386 12.3.0-4 [39.5 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 gcc-13-base i386 13.1.0-6 [38.4 kB] Get:78 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 13.1.0-6 [65.9 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.36-9 [2626 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 13.1.0-6 [2469 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 13.1.0-6 [7628 B] Get:82 http://mirror.einval.org/debian unstable/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libbz2-1.0 i386 1.0.8-5+b1 [47.1 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 linux-libc-dev i386 6.3.7-1 [1779 kB] Get:85 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.35-1 [96.0 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.35-1 [126 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2 [20.1 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-2 [35.1 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-2 [82.4 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2 [9284 B] Get:91 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.0.9-1 [2019 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-2 [359 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-2 [144 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.36-9 [1718 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.2.1+dfsg1-1.1 [574 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libnettle8 i386 3.8.1-2 [301 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libhogweed6 i386 3.8.1-2 [331 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libunistring2 i386 1.0-2 [435 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libidn2-0 i386 2.3.3-1+b1 [126 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.4-1 [21.1 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libp11-kit0 i386 0.24.1-2 [335 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-2 [58.4 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 libgnutls30 i386 3.7.9-2 [1404 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libdb5.3 i386 5.3.28+dfsg2-1 [759 kB] Get:110 http://mirror.einval.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-1 [20.2 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-1 [61.6 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libnghttp2-14 i386 1.54.0-1 [81.8 kB] Get:114 http://mirror.einval.org/debian unstable/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get:115 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.2.13.dfsg-1 [82.6 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get:117 http://mirror.einval.org/debian unstable/main i386 libssh2-1 i386 1.11.0-2 [224 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.5+dfsg2-1 [280 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 libcurl3-gnutls i386 7.88.1-10 [413 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 libcurl4-gnutls-dev i386 7.88.1-10 [527 kB] Get:121 http://mirror.einval.org/debian unstable/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 libdeflate-dev i386 1.14-1 [53.5 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 13.1.0-6 [131 kB] Get:124 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 13.1.0-6 [27.6 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 13.1.0-6 [748 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 13.1.0-6 [983 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 13.1.0-6 [229 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 libgcc-12-dev i386 12.3.0-4 [2427 kB] Get:129 http://mirror.einval.org/debian unstable/main i386 libhtscodecs2 i386 1.5.0-1 [69.2 kB] Get:130 http://mirror.einval.org/debian unstable/main i386 liblzma5 i386 5.4.1-0.2 [215 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libhts3 i386 1.17+ds-1 [479 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 libhts-dev i386 1.17+ds-1 [1608 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libtinfo6 i386 6.4-4 [333 kB] Get:136 http://mirror.einval.org/debian unstable/main i386 libncurses6 i386 6.4-4 [111 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 libncursesw6 i386 6.4-4 [146 kB] Get:138 http://mirror.einval.org/debian unstable/main i386 libncurses-dev i386 6.4-4 [379 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get:140 http://mirror.einval.org/debian unstable/main i386 libstdc++-12-dev i386 12.3.0-4 [2123 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get:142 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get:144 http://mirror.einval.org/debian unstable/main i386 tabix i386 1.17+ds-1 [511 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 104 MB in 1s (71.7 MB/s) Selecting previously unselected package autoconf-archive. (Reading database ... 10817 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package bash-completion. Preparing to unpack .../003-bash-completion_1%3a2.11-6_all.deb ... Unpacking bash-completion (1:2.11-6) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... 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Unpacking autopoint (0.21-12) ... Selecting previously unselected package gcc-12-i686-linux-gnu-base:arm64. Preparing to unpack .../019-gcc-12-i686-linux-gnu-base_12.3.0-4cross1_arm64.deb ... Unpacking gcc-12-i686-linux-gnu-base:arm64 (12.3.0-4cross1) ... Selecting previously unselected package cpp-12-i686-linux-gnu. Preparing to unpack .../020-cpp-12-i686-linux-gnu_12.3.0-4cross1_arm64.deb ... Unpacking cpp-12-i686-linux-gnu (12.3.0-4cross1) ... Selecting previously unselected package cpp-i686-linux-gnu. Preparing to unpack .../021-cpp-i686-linux-gnu_4%3a12.3.0-1_arm64.deb ... Unpacking cpp-i686-linux-gnu (4:12.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../022-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../023-binutils-i686-linux-gnu_2.40.50.20230625-1_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.40.50.20230625-1) ... Selecting previously unselected package gcc-12-cross-base. Preparing to unpack .../024-gcc-12-cross-base_12.3.0-4cross1_all.deb ... Unpacking gcc-12-cross-base (12.3.0-4cross1) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../025-gcc-13-cross-base_13.1.0-6cross1_all.deb ... Unpacking gcc-13-cross-base (13.1.0-6cross1) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../026-libc6-i386-cross_2.36-8cross1_all.deb ... Unpacking libc6-i386-cross (2.36-8cross1) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../027-libgcc-s1-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libgcc-s1-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libgomp1-i386-cross. Preparing to unpack .../028-libgomp1-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libgomp1-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libitm1-i386-cross. Preparing to unpack .../029-libitm1-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libitm1-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libatomic1-i386-cross. Preparing to unpack .../030-libatomic1-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libatomic1-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libasan8-i386-cross. Preparing to unpack .../031-libasan8-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libasan8-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libstdc++6-i386-cross. Preparing to unpack .../032-libstdc++6-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libstdc++6-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libubsan1-i386-cross. Preparing to unpack .../033-libubsan1-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libubsan1-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libquadmath0-i386-cross. Preparing to unpack .../034-libquadmath0-i386-cross_13.1.0-6cross1_all.deb ... Unpacking libquadmath0-i386-cross (13.1.0-6cross1) ... Selecting previously unselected package libgcc-12-dev-i386-cross. Preparing to unpack .../035-libgcc-12-dev-i386-cross_12.3.0-4cross1_all.deb ... Unpacking libgcc-12-dev-i386-cross (12.3.0-4cross1) ... Selecting previously unselected package gcc-12-i686-linux-gnu. Preparing to unpack .../036-gcc-12-i686-linux-gnu_12.3.0-4cross1_arm64.deb ... Unpacking gcc-12-i686-linux-gnu (12.3.0-4cross1) ... Selecting previously unselected package gcc-i686-linux-gnu. Preparing to unpack .../037-gcc-i686-linux-gnu_4%3a12.3.0-1_arm64.deb ... Unpacking gcc-i686-linux-gnu (4:12.3.0-1) ... Selecting previously unselected package linux-libc-dev-i386-cross. Preparing to unpack .../038-linux-libc-dev-i386-cross_6.1.4-1cross1_all.deb ... Unpacking linux-libc-dev-i386-cross (6.1.4-1cross1) ... Selecting previously unselected package libc6-dev-i386-cross. 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Setting up libicu72:arm64 (72.1-3) ... Setting up gcc-12-cross-base (12.3.0-4cross1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.40.50.20230625-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up linux-libc-dev:i386 (6.3.7-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up autoconf-archive (20220903-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libfakeroot:arm64 (1.31-1.2) ... Setting up gcc-12-base:i386 (12.3.0-4) ... Setting up gcc-12-i686-linux-gnu-base:arm64 (12.3.0-4cross1) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up linux-libc-dev-i386-cross (6.1.4-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up gcc-13-base:i386 (13.1.0-6) ... Setting up bash-completion (1:2.11-6) ... Setting up gcc-13-cross-base (13.1.0-6cross1) ... Setting up autopoint (0.21-12) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.36-8cross1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libquadmath0-i386-cross (13.1.0-6cross1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up cpp-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up libtool (2.4.7-5) ... Setting up libatomic1-i386-cross (13.1.0-6cross1) ... Setting up libgomp1-i386-cross (13.1.0-6cross1) ... Setting up libc6-dev-i386-cross (2.36-8cross1) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (13.1.0-6cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (13.1.0-6cross1) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up cpp-i686-linux-gnu (4:12.3.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (13.1.0-6cross1) ... Setting up libstdc++6-i386-cross (13.1.0-6cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.4) ... Setting up libubsan1-i386-cross (13.1.0-6cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-12-dev-i386-cross (12.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libstdc++-12-dev-i386-cross (12.3.0-4cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up gcc-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up g++-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up gcc-i686-linux-gnu (4:12.3.0-1) ... Setting up dpkg-cross (2.6.20) ... Setting up g++-i686-linux-gnu (4:12.3.0-1) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (13.1.0-6) ... Setting up libc6:i386 (2.36-9) ... Setting up libffi8:i386 (3.4.4-1) ... Setting up libasan8:i386 (13.1.0-6) ... Setting up libtasn1-6:i386 (4.19.0-2) ... Setting up libbz2-1.0:i386 (1.0.8-5+b1) ... Setting up libdb5.3:i386 (5.3.28+dfsg2-1) ... Setting up libstdc++6:i386 (13.1.0-6) ... Setting up libitm1:i386 (13.1.0-6) ... Setting up libtinfo6:i386 (6.4-4) ... Setting up libhtscodecs2:i386 (1.5.0-1) ... Setting up libzstd1:i386 (1.5.5+dfsg2-1) ... Setting up libkeyutils1:i386 (1.6.3-2) ... Setting up liblzma5:i386 (5.4.1-0.2) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libssl3:i386 (3.0.9-1) ... Setting up libnghttp2-14:i386 (1.54.0-1) ... Setting up libunistring2:i386 (1.0-2) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up zlib1g:i386 (1:1.2.13.dfsg-1) ... Setting up libcrypt1:i386 (1:4.4.35-1) ... Setting up libidn2-0:i386 (2.3.3-1+b1) ... Setting up libcom-err2:i386 (1.47.0-2) ... Setting up libgomp1:i386 (13.1.0-6) ... Setting up libkrb5support0:i386 (1.20.1-2) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-1) ... Setting up libnettle8:i386 (3.8.1-2) ... Setting up libgmp10:i386 (2:6.2.1+dfsg1-1.1) ... Setting up libncurses6:i386 (6.4-4) ... Setting up libquadmath0:i386 (13.1.0-6) ... Setting up libp11-kit0:i386 (0.24.1-2) ... Setting up libatomic1:i386 (13.1.0-6) ... Setting up libncursesw6:i386 (6.4-4) ... Setting up libk5crypto3:i386 (1.20.1-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-1) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up libubsan1:i386 (13.1.0-6) ... Setting up libcrypt-dev:i386 (1:4.4.35-1) ... Setting up libssh2-1:i386 (1.11.0-2) ... Setting up libkrb5-3:i386 (1.20.1-2) ... Setting up libdeflate-dev:i386 (1.14-1) ... Setting up tabix:i386 (1.17+ds-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libhogweed6:i386 (3.8.1-2) ... Setting up libgnutls30:i386 (3.7.9-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgcc-12-dev:i386 (12.3.0-4) ... Setting up libgssapi-krb5-2:i386 (1.20.1-2) ... Setting up libtirpc3:i386 (1.3.3+ds-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up libtirpc-dev:i386 (1.3.3+ds-1) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libcurl3-gnutls:i386 (7.88.1-10) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-10) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.36-9) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up libhts3:i386 (1.17+ds-1) ... Setting up libncurses-dev:i386 (6.4-4) ... Setting up libstdc++-12-dev:i386 (12.3.0-4) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libhts-dev:i386 (1.17+ds-1) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40.50.20230625-1 dpkg-dev_1.21.22 g++-12_12.3.0-4 gcc-12_12.3.0-4 libc6-dev_2.36-9 libstdc++-12-dev_12.3.0-4 libstdc++-12-dev-i386-cross_12.3.0-4cross1 libstdc++6_13.1.0-6 libstdc++6-i386-cross_13.1.0-6cross1 linux-libc-dev_6.3.7-1 Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b2 bash-completion_1:2.11-6 binutils_2.40.50.20230625-1 binutils-aarch64-linux-gnu_2.40.50.20230625-1 binutils-common_2.40.50.20230625-1 binutils-i686-linux-gnu_2.40.50.20230625-1 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.3.0-1 cpp-12_12.3.0-4 cpp-12-i686-linux-gnu_12.3.0-4cross1 cpp-i686-linux-gnu_4:12.3.0-1 cross-config_2.6.20 crossbuild-essential-i386_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.3.0-1 g++-12_12.3.0-4 g++-12-i686-linux-gnu_12.3.0-4cross1 g++-i686-linux-gnu_4:12.3.0-1 gcc_4:12.3.0-1 gcc-12_12.3.0-4 gcc-12-base_12.3.0-4 gcc-12-cross-base_12.3.0-4cross1 gcc-12-i686-linux-gnu_12.3.0-4cross1 gcc-12-i686-linux-gnu-base_12.3.0-4cross1 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patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.06-4 tabix_1.17+ds-1 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.17-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 13), bash-completion, libio-pty-perl , libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: d1268bc344dfa232f8da9ff7b6f0daf7e25d4135 5459752 samtools_1.17.orig.tar.gz 9acd81361fad894450e6943c5d4faf2b334e09d5 22852 samtools_1.17-1.debian.tar.xz Checksums-Sha256: f76ec1880468ecaa5341a7256ae896f2cfb191193dbb683046776fb81e18af49 5459752 samtools_1.17.orig.tar.gz f4101dea7163f452f86363831eb43ae3a6921e54847e99081301106fd392d136 22852 samtools_1.17-1.debian.tar.xz Files: 1da0897ae626b75769e31efa9b8bf7a0 5459752 samtools_1.17.orig.tar.gz 071e15168e5850892703c53ccf502d53 22852 samtools_1.17-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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signature: No public key dpkg-source: warning: cannot verify inline signature for ./samtools_1.17-1.dsc: no acceptable signature found dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.17.orig.tar.gz dpkg-source: info: unpacking samtools_1.17-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch dpkg-source: info: applying samtools-fasta-q-whatis.patch dpkg-source: info: applying typos.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.17-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from samtools-1.17/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level dh_auto_configure -- --with-htslib=system ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for gawk... no checking for mawk... mawk checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.17"' > version.h echo '#define SAMTOOLS_CC "i686-linux-gnu-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/<>@«BUILDPATH»@g' version.h i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_ampliconclip.o bam_ampliconclip.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o amplicon_stats.o amplicon_stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_samples.o bam_samples.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_consensus.o bam_consensus.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_pileup.o consensus_pileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reference.o reference.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reset.o reset.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram_size.o cram_size.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o ./lz4/lz4.o libst.a -lhts -lcurses -lm -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lhts -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -DMAQ_LONGREADS -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C i686-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- \ prefix=/usr install -m0755 -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/share/man/man1 install -p samtools /<>/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /<>/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /<>/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /<>/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/<>' make clean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -m0755 -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -m0755 -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -m0755 -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// install -m0755 -d debian/samtools/usr/share/man/man1 cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done # Disable the executable bit on a dataset. if [ -d debian/samtools-test ] \ ; then chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed \ ; fi make[1]: Leaving directory '/<>' dh_installdocs -a install -m0755 -d debian/samtools/usr/share/doc/samtools install -m0755 -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -m0755 -d debian/samtools/usr/share/doc/samtools install -p -m0644 debian/.debhelper/generated/samtools/dh_installchangelogs.dch.trimmed debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 debian/NEWS debian/samtools/usr/share/doc/samtools/NEWS.Debian install -p -m0644 NEWS debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/<>' dh_installexamples -a install -m0755 -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples rm -f debian/samtools.debhelper.log debian/rules execute_before_dh_installman make[1]: Entering directory '/<>' # Fix whatis entries for subcommands; "samtools subcommand \- desc." # will confuse the lexer, but "samtools-subcommand \- desc." will work. sed -i '/^\.SH NAME/{n;s/^\([^ ]\+\) \([^ ]\+\) \\- /\1-\2 \\- /}' \ debian/*/usr/share/man/man*/*.* # .EX expects a indentation width. sed -i 's/^.EX$/.EX 8/' debian/*/usr/share/man/man*/*.* make[1]: Leaving directory '/<>' dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconclip.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-consensus.1.dh-new debian/samtools/usr/share/man/man1/samtools-consensus.1 mv debian/samtools/usr/share/man/man1/samtools-coverage.1.dh-new debian/samtools/usr/share/man/man1/samtools-coverage.1 mv debian/samtools/usr/share/man/man1/samtools-cram-size.1.dh-new debian/samtools/usr/share/man/man1/samtools-cram-size.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-head.1.dh-new debian/samtools/usr/share/man/man1/samtools-head.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-import.1.dh-new debian/samtools/usr/share/man/man1/samtools-import.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reference.1.dh-new debian/samtools/usr/share/man/man1/samtools-reference.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-reset.1.dh-new debian/samtools/usr/share/man/man1/samtools-reset.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-samples.1.dh-new debian/samtools/usr/share/man/man1/samtools-samples.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -m0755 -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_strip_nondeterminism -a Using 1687465915 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/<>' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_fixperms -a find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -m0755 -d debian/samtools/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/samtools/usr/lib/debug/.dwz/i386-linux-gnu/samtools.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/samtools.debug -- debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/samtools debian/samtools/usr/bin/wgsim dwz: debian/samtools/usr/bin/samtools: DWARF compression not beneficial - old size 597129 new size 616638 i686-linux-gnu-objcopy --compress-debug-sections debian/samtools/usr/lib/debug/.dwz/i386-linux-gnu/samtools.debug chmod 0644 -- debian/samtools/usr/lib/debug/.dwz/i386-linux-gnu/samtools.debug dh_strip -a install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f2 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f2/21c09d297a7ac95b38fedaf921a588be06f46e.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f2/21c09d297a7ac95b38fedaf921a588be06f46e.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f2/21c09d297a7ac95b38fedaf921a588be06f46e.debug debian/samtools/usr/bin/wgsim install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/58 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/58/08cfe903272e44bddd4b2057bb0c0bba6d2477.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/58/08cfe903272e44bddd4b2057bb0c0bba6d2477.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/58/08cfe903272e44bddd4b2057bb0c0bba6d2477.debug debian/samtools/usr/bin/md5sum-lite install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/21 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/21/9a79396d5aa7d9a184bbb799861b4f873c66cf.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/21/9a79396d5aa7d9a184bbb799861b4f873c66cf.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/21/9a79396d5aa7d9a184bbb799861b4f873c66cf.debug debian/samtools/usr/bin/md5fa install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/83 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/83/8929c948dd9230d7b26813e541f18eee8878cb.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/83/8929c948dd9230d7b26813e541f18eee8878cb.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/83/8929c948dd9230d7b26813e541f18eee8878cb.debug debian/samtools/usr/bin/maq2sam-short install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/af i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/af/82d9a87b3d979e29a21572b815a1f28fb831f8.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/af/82d9a87b3d979e29a21572b815a1f28fb831f8.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/af/82d9a87b3d979e29a21572b815a1f28fb831f8.debug debian/samtools/usr/bin/ace2sam install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/386284a7e590f54536bfb2136774d9bdfd50fa.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/386284a7e590f54536bfb2136774d9bdfd50fa.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/386284a7e590f54536bfb2136774d9bdfd50fa.debug debian/samtools/usr/bin/maq2sam-long install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/97 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/97/318c52779cbb53d669c92090f5281119781ddf.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/97/318c52779cbb53d669c92090f5281119781ddf.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/97/318c52779cbb53d669c92090f5281119781ddf.debug debian/samtools/usr/bin/samtools install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/samtools/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/samtools/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/samtools/usr/lib/debug install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym install -m0755 -d debian/.debhelper/samtools dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars debian/samtools/usr/bin/wgsim debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/samtools dh_installdeb -a install -m0755 -d debian/samtools/DEBIAN dh_gencontrol -a install -m0755 -d debian/samtools/DEBIAN echo misc:Depends= >> debian/samtools.substvars echo misc:Pre-Depends= >> debian/samtools.substvars install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=samtools-dbgsym "-DDepends=samtools (= \${binary:Version})" "-DDescription=debug symbols for samtools" "-DBuild-Ids=219a79396d5aa7d9a184bbb799861b4f873c66cf 5808cfe903272e44bddd4b2057bb0c0bba6d2477 838929c948dd9230d7b26813e541f18eee8878cb 8e386284a7e590f54536bfb2136774d9bdfd50fa 97318c52779cbb53d669c92090f5281119781ddf af82d9a87b3d979e29a21572b815a1f28fb831f8 f221c09d297a7ac95b38fedaf921a588be06f46e" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/samtools dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/samtools/DEBIAN/control dh_md5sums -a install -m0755 -d debian/samtools/DEBIAN cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.17-1_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.17-1_i386.deb'. dpkg-genbuildinfo --build=any -O../samtools_1.17-1_i386.buildinfo dpkg-genchanges --build=any -O../samtools_1.17-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from samtools-1.17/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-06-30T06:48:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools_1.17-1_i386.changes: ----------------------------- Format: 1.8 Date: Thu, 22 Jun 2023 22:31:55 +0200 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.17-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.17-1) unstable; urgency=medium . * Migrate samtools to unstable. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-dbgsym Architecture: i386 Version: 1.17-1 Checksums-Md5: 3095048520b66d86bdcbd6f3e4430c7c 878312 samtools-dbgsym_1.17-1_i386.deb 25be957e9ea468c7d5c026b8b232ce61 661352 samtools_1.17-1_i386.deb Checksums-Sha1: 8274d750034bbedc55dd2de44ab7b01b1546fa41 878312 samtools-dbgsym_1.17-1_i386.deb 2034f0267480e9941203f8c7d89be66391ffa45f 661352 samtools_1.17-1_i386.deb Checksums-Sha256: 829edab1cd08925bf3589f2c1ab5622718bf8a028dfef4804a8c928e5beef0f1 878312 samtools-dbgsym_1.17-1_i386.deb 6c295f90f6db256f10513749884d0524fe35359d8b4f4ed2ae60b8d8e3037772 661352 samtools_1.17-1_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 30 Jun 2023 06:48:13 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), autoconf-archive (= 20220903-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b2), bash-completion (= 1:2.11-6), binutils (= 2.40.50.20230625-1), binutils-aarch64-linux-gnu (= 2.40.50.20230625-1), binutils-common (= 2.40.50.20230625-1), bsdextrautils (= 2.38.1-5+b1), bsdutils (= 1:2.38.1-5+b1), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.3.0-1), cpp-12 (= 12.3.0-4), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), g++ (= 4:12.3.0-1), g++-12 (= 12.3.0-4), gcc (= 4:12.3.0-1), gcc-12 (= 12.3.0-4), gcc-12-base (= 12.3.0-4), gcc-13-base (= 13.1.0-6), gettext (= 0.21-12), gettext-base (= 0.21-12), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.1.0-6), libatomic1 (= 13.1.0-6), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbinutils (= 2.40.50.20230625-1), libblkid1 (= 2.38.1-5+b1), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libbz2-dev (= 1.0.8-5+b1), libc-bin (= 2.36-9), libc-dev-bin (= 2.36-9), libc6 (= 2.36-9), libc6-dev (= 2.36-9), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.1.0-6), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.35-1), libcrypt1 (= 1:4.4.35-1), libctf-nobfd0 (= 2.40.50.20230625-1), libctf0 (= 2.40.50.20230625-1), libcurl3-gnutls (= 7.88.1-10), libcurl4-gnutls-dev (= 7.88.1-10), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.22), libelf1 (= 0.188-2.1), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-4), libgcc-s1 (= 13.1.0-6), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.9-2), libgomp1 (= 13.1.0-6), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40.50.20230625-1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.8.1-2), libhts-dev (= 1.17+ds-1), libhts3 (= 1.17+ds-1), libhtscodecs2 (= 1.5.0-1), libhwasan0 (= 13.1.0-6), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.26-3), libitm1 (= 13.1.0-6), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 13.1.0-6), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.2), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5+b1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncurses-dev (= 6.4-4), libncurses6 (= 6.4-4), libncursesw6 (= 6.4-4), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.54.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-1), libpsl5 (= 0.21.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-1), libsasl2-modules-db (= 2.1.28+dfsg1-1), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.4-1+b6), libsmartcols1 (= 2.38.1-5+b1), libssh2-1 (= 1.11.0-2), libssl3 (= 3.0.9-1), libstdc++-12-dev (= 12.3.0-4), libstdc++6 (= 13.1.0-6), libsub-override-perl (= 0.09-4), libsystemd0 (= 253-4), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-4), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan2 (= 13.1.0-6), libubsan1 (= 13.1.0-6), libuchardet0 (= 0.0.7-1), libudev1 (= 253-4), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5+b1), libxml2 (= 2.9.14+dfsg-1.2), libzstd1 (= 1.5.5+dfsg2-1), linux-libc-dev (= 6.3.7-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-2), mawk (= 1.3.4.20230525-1), ncurses-base (= 6.4-4), ncurses-bin (= 6.4-4), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), pkg-config (= 1.8.1-1), pkgconf (= 1.8.1-1), pkgconf-bin (= 1.8.1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.06-4), tabix (= 1.17+ds-1), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.38.1-5+b1), util-linux-extra (= 2.38.1-5+b1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1687465915" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ samtools-dbgsym_1.17-1_i386.deb ------------------------------- new Debian package, version 2.0. size 878312 bytes: control archive=892 bytes. 617 bytes, 12 lines control 825 bytes, 8 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.17-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 940 Depends: samtools (= 1.17-1) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 219a79396d5aa7d9a184bbb799861b4f873c66cf 5808cfe903272e44bddd4b2057bb0c0bba6d2477 838929c948dd9230d7b26813e541f18eee8878cb 8e386284a7e590f54536bfb2136774d9bdfd50fa 97318c52779cbb53d669c92090f5281119781ddf af82d9a87b3d979e29a21572b815a1f28fb831f8 f221c09d297a7ac95b38fedaf921a588be06f46e drwxr-xr-x root/root 0 2023-06-22 20:31 ./ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/21/ -rw-r--r-- root/root 9040 2023-06-22 20:31 ./usr/lib/debug/.build-id/21/9a79396d5aa7d9a184bbb799861b4f873c66cf.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/58/ -rw-r--r-- root/root 5784 2023-06-22 20:31 ./usr/lib/debug/.build-id/58/08cfe903272e44bddd4b2057bb0c0bba6d2477.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/83/ -rw-r--r-- root/root 9408 2023-06-22 20:31 ./usr/lib/debug/.build-id/83/8929c948dd9230d7b26813e541f18eee8878cb.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/8e/ -rw-r--r-- root/root 9420 2023-06-22 20:31 ./usr/lib/debug/.build-id/8e/386284a7e590f54536bfb2136774d9bdfd50fa.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 856332 2023-06-22 20:31 ./usr/lib/debug/.build-id/97/318c52779cbb53d669c92090f5281119781ddf.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/af/ -rw-r--r-- root/root 24648 2023-06-22 20:31 ./usr/lib/debug/.build-id/af/82d9a87b3d979e29a21572b815a1f28fb831f8.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.build-id/f2/ -rw-r--r-- root/root 20568 2023-06-22 20:31 ./usr/lib/debug/.build-id/f2/21c09d297a7ac95b38fedaf921a588be06f46e.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 3684 2023-06-22 20:31 ./usr/lib/debug/.dwz/i386-linux-gnu/samtools.debug drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-06-22 20:31 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.17-1_i386.deb ------------------------ new Debian package, version 2.0. size 661352 bytes: control archive=2936 bytes. 833 bytes, 17 lines control 5678 bytes, 83 lines md5sums Package: samtools Version: 1.17-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1477 Depends: libc6 (>= 2.34), libhts3 (>= 1.17), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.2.3.3) Suggests: cwltool Section: science Priority: optional Homepage: https://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. drwxr-xr-x root/root 0 2023-06-22 20:31 ./ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/bin/ -rwxr-xr-x root/root 21992 2023-06-22 20:31 ./usr/bin/ace2sam -rwxr-xr-x root/root 5443 2023-06-22 20:31 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2023-06-22 20:31 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2023-06-22 20:31 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 3300 2023-06-22 20:31 ./usr/bin/fasta-sanitize.pl -rwxr-xr-x root/root 6121 2023-06-22 20:31 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 13800 2023-06-22 20:31 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 13800 2023-06-22 20:31 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 13800 2023-06-22 20:31 ./usr/bin/md5fa -rwxr-xr-x root/root 13800 2023-06-22 20:31 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2023-06-22 20:31 ./usr/bin/novo2sam.pl -rwxr-xr-x root/root 44331 2023-06-22 20:31 ./usr/bin/plot-ampliconstats -rwxr-xr-x root/root 50549 2023-06-22 20:31 ./usr/bin/plot-bamstats -rwxr-xr-x root/root 3204 2023-06-22 20:31 ./usr/bin/psl2sam.pl -rwxr-xr-x root/root 8957 2023-06-22 20:31 ./usr/bin/sam2vcf.pl -rwxr-xr-x root/root 852700 2023-06-22 20:31 ./usr/bin/samtools -rwxr-xr-x root/root 16474 2023-06-22 20:31 ./usr/bin/samtools.pl -rwxr-xr-x root/root 11333 2023-06-22 20:31 ./usr/bin/seq_cache_populate.pl -rwxr-xr-x root/root 3905 2023-06-22 20:31 ./usr/bin/soap2sam.pl -rwxr-xr-x root/root 26128 2023-06-22 20:31 ./usr/bin/wgsim -rwxr-xr-x root/root 12542 2023-06-22 20:31 ./usr/bin/wgsim_eval.pl -rwxr-xr-x root/root 3579 2023-06-22 20:31 ./usr/bin/zoom2sam.pl drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/commonwl/ -rwxr-xr-x root/root 1906 2023-06-11 13:09 ./usr/share/commonwl/samtools-faidx.cwl -rwxr-xr-x root/root 1979 2023-06-11 13:09 ./usr/share/commonwl/samtools-index.cwl -rwxr-xr-x root/root 1627 2023-06-11 13:09 ./usr/share/commonwl/samtools-rmdup.cwl -rwxr-xr-x root/root 2834 2023-06-11 13:09 ./usr/share/commonwl/samtools-sort.cwl -rwxr-xr-x root/root 6224 2023-06-11 13:09 ./usr/share/commonwl/samtools-view.cwl drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/doc/samtools/ -rw-r--r-- root/root 828 2023-02-21 12:24 ./usr/share/doc/samtools/AUTHORS -rw-r--r-- root/root 369 2023-06-11 13:09 ./usr/share/doc/samtools/NEWS.Debian.gz -rw-r--r-- root/root 497 2023-06-11 13:09 ./usr/share/doc/samtools/README.Debian -rw-r--r-- root/root 2479 2023-02-21 12:24 ./usr/share/doc/samtools/README.gz -rw-r--r-- root/root 1777 2023-06-22 20:31 ./usr/share/doc/samtools/changelog.Debian.gz -rw-r--r-- root/root 32468 2023-02-21 12:24 ./usr/share/doc/samtools/changelog.gz -rw-r--r-- root/root 2250 2023-06-11 13:09 ./usr/share/doc/samtools/copyright drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/doc/samtools/examples/ -rw-r--r-- root/root 1315 2023-02-21 12:24 ./usr/share/doc/samtools/examples/00README.txt -rw-r--r-- root/root 3225 2023-02-21 12:24 ./usr/share/doc/samtools/examples/ex1.fa -rw-r--r-- root/root 114565 2023-06-22 20:31 ./usr/share/doc/samtools/examples/ex1.sam.gz -rw-r--r-- root/root 98 2023-02-21 12:24 ./usr/share/doc/samtools/examples/toy.fa -rw-r--r-- root/root 786 2023-02-21 12:24 ./usr/share/doc/samtools/examples/toy.sam drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 168 2023-06-12 18:58 ./usr/share/lintian/overrides/samtools drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/man/ drwxr-xr-x root/root 0 2023-06-22 20:31 ./usr/share/man/man1/ -rw-r--r-- root/root 462 2023-06-22 20:31 ./usr/share/man/man1/ace2sam.1.gz -rw-r--r-- root/root 1639 2023-06-22 20:31 ./usr/share/man/man1/samtools-addreplacerg.1.gz -rw-r--r-- root/root 2314 2023-06-22 20:31 ./usr/share/man/man1/samtools-ampliconclip.1.gz -rw-r--r-- root/root 5839 2023-06-22 20:31 ./usr/share/man/man1/samtools-ampliconstats.1.gz -rw-r--r-- root/root 2017 2023-06-22 20:31 ./usr/share/man/man1/samtools-bedcov.1.gz -rw-r--r-- root/root 2301 2023-06-22 20:31 ./usr/share/man/man1/samtools-calmd.1.gz -rw-r--r-- root/root 1543 2023-06-22 20:31 ./usr/share/man/man1/samtools-cat.1.gz -rw-r--r-- root/root 2472 2023-06-22 20:31 ./usr/share/man/man1/samtools-collate.1.gz -rw-r--r-- root/root 5618 2023-06-22 20:31 ./usr/share/man/man1/samtools-consensus.1.gz -rw-r--r-- root/root 2419 2023-06-22 20:31 ./usr/share/man/man1/samtools-coverage.1.gz -rw-r--r-- root/root 3179 2023-06-22 20:31 ./usr/share/man/man1/samtools-cram-size.1.gz -rw-r--r-- root/root 1754 2023-06-22 20:31 ./usr/share/man/man1/samtools-depad.1.gz -rw-r--r-- root/root 3189 2023-06-22 20:31 ./usr/share/man/man1/samtools-depth.1.gz -rw-r--r-- root/root 1684 2023-06-22 20:31 ./usr/share/man/man1/samtools-dict.1.gz -rw-r--r-- root/root 2119 2023-06-22 20:31 ./usr/share/man/man1/samtools-faidx.1.gz -rw-r--r-- root/root 3947 2023-06-22 20:31 ./usr/share/man/man1/samtools-fasta.1.gz lrwxrwxrwx root/root 0 2023-06-22 20:31 ./usr/share/man/man1/samtools-fastq.1.gz -> samtools-fasta.1.gz -rw-r--r-- root/root 1652 2023-06-22 20:31 ./usr/share/man/man1/samtools-fixmate.1.gz -rw-r--r-- root/root 1499 2023-06-22 20:31 ./usr/share/man/man1/samtools-flags.1.gz -rw-r--r-- root/root 2603 2023-06-22 20:31 ./usr/share/man/man1/samtools-flagstat.1.gz -rw-r--r-- root/root 2168 2023-06-22 20:31 ./usr/share/man/man1/samtools-fqidx.1.gz -rw-r--r-- root/root 1335 2023-06-22 20:31 ./usr/share/man/man1/samtools-head.1.gz -rw-r--r-- root/root 1413 2023-06-22 20:31 ./usr/share/man/man1/samtools-idxstats.1.gz -rw-r--r-- root/root 3421 2023-06-22 20:31 ./usr/share/man/man1/samtools-import.1.gz -rw-r--r-- root/root 1932 2023-06-22 20:31 ./usr/share/man/man1/samtools-index.1.gz -rw-r--r-- root/root 3860 2023-06-22 20:31 ./usr/share/man/man1/samtools-markdup.1.gz -rw-r--r-- root/root 3346 2023-06-22 20:31 ./usr/share/man/man1/samtools-merge.1.gz -rw-r--r-- root/root 7005 2023-06-22 20:31 ./usr/share/man/man1/samtools-mpileup.1.gz -rw-r--r-- root/root 1437 2023-06-22 20:31 ./usr/share/man/man1/samtools-phase.1.gz -rw-r--r-- root/root 1679 2023-06-22 20:31 ./usr/share/man/man1/samtools-quickcheck.1.gz -rw-r--r-- root/root 1880 2023-06-22 20:31 ./usr/share/man/man1/samtools-reference.1.gz -rw-r--r-- root/root 1958 2023-06-22 20:31 ./usr/share/man/man1/samtools-reheader.1.gz -rw-r--r-- root/root 2306 2023-06-22 20:31 ./usr/share/man/man1/samtools-reset.1.gz -rw-r--r-- root/root 1471 2023-06-22 20:31 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 2281 2023-06-22 20:31 ./usr/share/man/man1/samtools-samples.1.gz -rw-r--r-- root/root 3706 2023-06-22 20:31 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 1644 2023-06-22 20:31 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 6260 2023-06-22 20:31 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1428 2023-06-22 20:31 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 2045 2023-06-22 20:31 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 7041 2023-06-22 20:31 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 15923 2023-06-22 20:31 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2023-06-22 20:31 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2023-06-22 20:31 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1460 B] Get:5 copy:/<>/apt_archive ./ Packages [1510 B] Fetched 3585 B in 0s (181 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookiejar-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookiejar-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 53.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.0.9-1 [1382 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20230311 [153 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.65-1 [31.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.5-5 [45.9 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.42.0-1 [803 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.63-1+b1 [42.8 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b1 [121 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.19-2 [91.0 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.57-1 [221 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b1 [35.3 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.29-1 [16.5 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-2+b1 [24.2 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.36-1 [128 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b1 [34.0 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b1 [98.8 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b1 [24.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b1 [28.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.44-2 [81.8 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookiejar-perl all 0.014-1 [17.3 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.083-1 [218 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.71-1 [187 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.13-6 [39.0 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b3 [167 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1 [12.3 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b1 [17.1 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.2 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1 [42.3 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1 [95.4 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1 [97.2 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.34-1 [57.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.28-1 [28.2 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b1 [24.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b1 [8396 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [13.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b2 [196 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b1 [72.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2 [19.9 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [32.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.10-6 [58.0 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (45.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 19492 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.9-1_arm64.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_arm64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.5-5_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-5) ... Selecting previously unselected package libreadline8:arm64. 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Setting up libberkeleydb-perl:arm64 (0.64-2+b1) ... Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:arm64 (4.36-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.42.0-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.29-1) ... Setting up libsereal-encoder-perl (5.004+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1) ... Setting up libsyntax-keyword-try-perl (0.28-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.9-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.19-2) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libhttp-cookiejar-perl (0.014-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.57-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.71-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 29156 Build-Time: 209 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 57 Job: samtools_1.17-1 Lintian: pass Machine Architecture: arm64 Package: samtools Package-Time: 309 Source-Version: 1.17-1 Space: 29156 Status: successful Version: 1.17-1 -------------------------------------------------------------------------------- Finished at 2023-06-30T06:48:15Z Build needed 00:05:09, 29156k disk space