sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | samtools 1.19-1 (armel) Sat, 16 Dec 2023 14:57:09 +0000 | +==============================================================================+ Package: samtools Version: 1.19-1 Source Version: 1.19-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-5c7ef1f9-0c8a-4ffb-bd67-0d1b3eeea5af' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-1WzxXx/resolver-AgfSZE' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-16-1408.35-F-2023-12-16-0205.36.pdiff [32.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-16-1408.35-F-2023-12-16-0205.36.pdiff [42.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-16-1408.35-F-2023-12-16-0205.36.pdiff [32.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-16-1408.35-F-2023-12-16-0205.36.pdiff [42.6 kB] Get:6 http://localhost:3142/debian sid/main armel Packages [9094 kB] Fetched 9493 kB in 4s (2667 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-12-base 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 41.0 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 gcc-12-base amd64 12.3.0-13 [41.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.0 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14616 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12.3.0-13_amd64.deb ... Unpacking gcc-12-base:amd64 (12.3.0-13) over (12.3.0-12) ... Setting up gcc-12-base:amd64 (12.3.0-13) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5688 kB of source archives. Get:1 http://localhost:3142/debian sid/main samtools 1.19-1 (dsc) [2284 B] Get:2 http://localhost:3142/debian sid/main samtools 1.19-1 (tar) [5664 kB] Get:3 http://localhost:3142/debian sid/main samtools 1.19-1 (diff) [21.7 kB] Fetched 5688 kB in 0s (157 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-1WzxXx/samtools-1.19' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-1WzxXx' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bash-completion, libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), bash-completion, libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [881 B] Get:5 copy:/<>/apt_archive ./ Packages [897 B] Fetched 2387 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabi bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armel libdeflate0:armel libelf1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses-dev:armel libncurses6:armel libncursesw6:armel libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libssh2-1:armel libssl3:armel libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db pkg-config:armel pkgconf:armel pkgconf-bin po-debconf sensible-utils tabix:armel ucf zlib1g:armel zlib1g-dev:armel Suggested packages: gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libcurl4-doc:armel libgnutls28-dev:armel libidn-dev:armel libkrb5-dev:armel libldap2-dev:armel librtmp-dev:armel libssh2-1-dev:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel liblzma-doc:armel ncurses-doc:armel libstdc++-11-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:armel ca-certificates:armel libarchive-cpio-perl krb5-locales:armel libldap-common:armel libgpm2:armel publicsuffix:armel libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabi bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armel libdeflate0:armel libelf1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses-dev:armel libncurses6:armel libncursesw6:armel libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libssh2-1:armel libssl3:armel libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db pkg-config:armel pkgconf:armel pkgconf-bin po-debconf sbuild-build-depends-main-dummy:armel sensible-utils tabix:armel ucf zlib1g:armel zlib1g-dev:armel 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 98.7 MB of archives. After this operation, 374 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://localhost:3142/debian sid/main amd64 autoconf-archive all 20220903-3 [775 kB] Get:3 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 bash-completion all 1:2.11-8 [224 kB] Get:6 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:8 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:10 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:11 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:12 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-2 [89.1 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:15 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:16 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:17 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:18 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:20 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:21 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.41.50.20231214-1 [3222 kB] Get:22 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi-base amd64 13.2.0-7cross2 [41.1 kB] Get:23 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [9284 kB] Get:24 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:13.2.1-2 [3944 B] Get:25 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:26 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-ports all 13.2.0-7cross2 [36.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.37-12cross1 [884 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 13.2.0-7cross2 [38.3 kB] Get:29 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 13.2.0-7cross2 [105 kB] Get:30 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 13.2.0-7cross2 [9120 B] Get:31 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 13.2.0-7cross2 [2382 kB] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 13.2.0-7cross2 [534 kB] Get:33 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 13.2.0-7cross2 [965 kB] Get:34 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armel-cross all 13.2.0-7cross2 [775 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [18.2 MB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:13.2.1-2 [1476 B] Get:37 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.5.8-1cross1 [1975 kB] Get:38 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.37-12cross1 [1292 kB] Get:39 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armel-cross all 13.2.0-7cross2 [2215 kB] Get:40 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [10.2 MB] Get:41 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:13.2.1-2 [1180 B] Get:42 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:43 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:44 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b1 [692 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:51 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:52 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:54 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.10 [3484 B] Get:58 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.8 [82.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:62 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:65 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:66 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:67 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:68 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:69 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:70 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.8 [956 kB] Get:71 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.4.0-7 [40.3 kB] Get:72 http://localhost:3142/debian sid/main armel gcc-13-base armel 13.2.0-9 [41.5 kB] Get:73 http://localhost:3142/debian sid/main armel libgcc-s1 armel 13.2.0-9 [38.3 kB] Get:74 http://localhost:3142/debian sid/main armel libc6 armel 2.37-13 [2140 kB] Get:75 http://localhost:3142/debian sid/main armel libasan6 armel 11.4.0-7 [1944 kB] Get:76 http://localhost:3142/debian sid/main armel libatomic1 armel 13.2.0-9 [9388 B] Get:77 http://localhost:3142/debian sid/main armel libbrotli1 armel 1.1.0-2+b1 [303 kB] Get:78 http://localhost:3142/debian sid/main armel libbz2-1.0 armel 1.0.8-5+b1 [45.4 kB] Get:79 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.5.13-1 [1999 kB] Get:80 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.36-2 [96.7 kB] Get:81 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.36-2 [126 kB] Get:82 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-5 [30.0 kB] Get:83 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.47.0-2+b1 [19.4 kB] Get:84 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-5 [74.6 kB] Get:85 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-2 [7864 B] Get:86 http://localhost:3142/debian sid/main armel libssl3 armel 3.1.4-2 [1644 kB] Get:87 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-5 [285 kB] Get:88 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-5 [111 kB] Get:89 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.4+ds-1 [69.4 kB] Get:90 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-3 [33.2 kB] Get:91 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.4+ds-1 [180 kB] Get:92 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-3 [61.6 kB] Get:93 http://localhost:3142/debian sid/main armel libc6-dev armel 2.37-13 [1294 kB] Get:94 http://localhost:3142/debian sid/main armel libbz2-dev armel 1.0.8-5+b1 [27.7 kB] Get:95 http://localhost:3142/debian sid/main armel libgmp10 armel 2:6.3.0+dfsg-2 [502 kB] Get:96 http://localhost:3142/debian sid/main armel libnettle8 armel 3.9.1-2 [301 kB] Get:97 http://localhost:3142/debian sid/main armel libhogweed6 armel 3.9.1-2 [314 kB] Get:98 http://localhost:3142/debian sid/main armel libunistring5 armel 1.1-2 [394 kB] Get:99 http://localhost:3142/debian sid/main armel libidn2-0 armel 2.3.4-1+b1 [121 kB] Get:100 http://localhost:3142/debian sid/main armel libffi8 armel 3.4.4-2 [19.6 kB] Get:101 http://localhost:3142/debian sid/main armel libp11-kit0 armel 0.25.3-2 [398 kB] Get:102 http://localhost:3142/debian sid/main armel libtasn1-6 armel 4.19.0-3 [42.5 kB] Get:103 http://localhost:3142/debian sid/main armel libgnutls30 armel 3.8.2-1 [1332 kB] Get:104 http://localhost:3142/debian sid/main armel libdb5.3 armel 5.3.28+dfsg2-4 [576 kB] Get:105 http://localhost:3142/debian sid/main armel libsasl2-modules-db armel 2.1.28+dfsg1-4 [18.1 kB] Get:106 http://localhost:3142/debian sid/main armel libsasl2-2 armel 2.1.28+dfsg1-4 [49.6 kB] Get:107 http://localhost:3142/debian sid/main armel libldap-2.5-0 armel 2.5.13+dfsg-5 [156 kB] Get:108 http://localhost:3142/debian sid/main armel libnghttp2-14 armel 1.58.0-1 [62.0 kB] Get:109 http://localhost:3142/debian sid/main armel libpsl5 armel 0.21.2-1+b1 [57.9 kB] Get:110 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.3.dfsg-3 [74.3 kB] Get:111 http://localhost:3142/debian sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB] Get:112 http://localhost:3142/debian sid/main armel libssh2-1 armel 1.11.0-3 [195 kB] Get:113 http://localhost:3142/debian sid/main armel libzstd1 armel 1.5.5+dfsg2-2 [256 kB] Get:114 http://localhost:3142/debian sid/main armel libcurl3-gnutls armel 8.5.0-1 [373 kB] Get:115 http://localhost:3142/debian sid/main armel libcurl4-gnutls-dev armel 8.5.0-1 [484 kB] Get:116 http://localhost:3142/debian sid/main armel libdeflate0 armel 1.18-1 [33.5 kB] Get:117 http://localhost:3142/debian sid/main armel libdeflate-dev armel 1.18-1 [41.5 kB] Get:118 http://localhost:3142/debian sid/main armel libgomp1 armel 13.2.0-9 [107 kB] Get:119 http://localhost:3142/debian sid/main armel libstdc++6 armel 13.2.0-9 [580 kB] Get:120 http://localhost:3142/debian sid/main armel libubsan1 armel 13.2.0-9 [967 kB] Get:121 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.4.0-7 [702 kB] Get:122 http://localhost:3142/debian sid/main armel libhtscodecs2 armel 1.6.0-1 [61.7 kB] Get:123 http://localhost:3142/debian sid/main armel liblzma5 armel 5.4.5-0.1 [227 kB] Get:124 http://localhost:3142/debian sid/main armel libhts3 armel 1.18+ds-1 [385 kB] Get:125 http://localhost:3142/debian sid/main armel liblzma-dev armel 5.4.5-0.1 [281 kB] Get:126 http://localhost:3142/debian sid/main armel zlib1g-dev armel 1:1.3.dfsg-3 [904 kB] Get:127 http://localhost:3142/debian sid/main armel libhts-dev armel 1.18+ds-1 [1571 kB] Get:128 http://localhost:3142/debian sid/main armel libtinfo6 armel 6.4+20231209-1 [326 kB] Get:129 http://localhost:3142/debian sid/main armel libncurses6 armel 6.4+20231209-1 [82.8 kB] Get:130 http://localhost:3142/debian sid/main armel libncursesw6 armel 6.4+20231209-1 [109 kB] Get:131 http://localhost:3142/debian sid/main armel libncurses-dev armel 6.4+20231209-1 [308 kB] Get:132 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:133 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.4.0-7 [1989 kB] Get:134 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:135 http://localhost:3142/debian sid/main armel pkgconf armel 1.8.1-1 [25.9 kB] Get:136 http://localhost:3142/debian sid/main armel pkg-config armel 1.8.1-1 [13.7 kB] Get:137 http://localhost:3142/debian sid/main armel tabix armel 1.18+ds-1 [398 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.7 MB in 1s (181 MB/s) Selecting previously unselected package autoconf-archive. (Reading database ... 14616 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package bash-completion. Preparing to unpack .../003-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.45-2_amd64.deb ... 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Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../085-libkrb5-3_1.20.1-5_armel.deb ... Unpacking libkrb5-3:armel (1.20.1-5) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../086-libgssapi-krb5-2_1.20.1-5_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.20.1-5) ... Selecting previously unselected package libtirpc3:armel. Preparing to unpack .../087-libtirpc3_1.3.4+ds-1_armel.deb ... Unpacking libtirpc3:armel (1.3.4+ds-1) ... Selecting previously unselected package libnsl2:armel. Preparing to unpack .../088-libnsl2_1.3.0-3_armel.deb ... Unpacking libnsl2:armel (1.3.0-3) ... Selecting previously unselected package libtirpc-dev:armel. Preparing to unpack .../089-libtirpc-dev_1.3.4+ds-1_armel.deb ... Unpacking libtirpc-dev:armel (1.3.4+ds-1) ... Selecting previously unselected package libnsl-dev:armel. Preparing to unpack .../090-libnsl-dev_1.3.0-3_armel.deb ... Unpacking libnsl-dev:armel (1.3.0-3) ... 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Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../097-libidn2-0_2.3.4-1+b1_armel.deb ... Unpacking libidn2-0:armel (2.3.4-1+b1) ... Selecting previously unselected package libffi8:armel. Preparing to unpack .../098-libffi8_3.4.4-2_armel.deb ... Unpacking libffi8:armel (3.4.4-2) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../099-libp11-kit0_0.25.3-2_armel.deb ... Unpacking libp11-kit0:armel (0.25.3-2) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../100-libtasn1-6_4.19.0-3_armel.deb ... Unpacking libtasn1-6:armel (4.19.0-3) ... Selecting previously unselected package libgnutls30:armel. Preparing to unpack .../101-libgnutls30_3.8.2-1_armel.deb ... Unpacking libgnutls30:armel (3.8.2-1) ... Selecting previously unselected package libdb5.3:armel. Preparing to unpack .../102-libdb5.3_5.3.28+dfsg2-4_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg2-4) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../103-libsasl2-modules-db_2.1.28+dfsg1-4_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.28+dfsg1-4) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../104-libsasl2-2_2.1.28+dfsg1-4_armel.deb ... Unpacking libsasl2-2:armel (2.1.28+dfsg1-4) ... Selecting previously unselected package libldap-2.5-0:armel. Preparing to unpack .../105-libldap-2.5-0_2.5.13+dfsg-5_armel.deb ... Unpacking libldap-2.5-0:armel (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../106-libnghttp2-14_1.58.0-1_armel.deb ... Unpacking libnghttp2-14:armel (1.58.0-1) ... Selecting previously unselected package libpsl5:armel. Preparing to unpack .../107-libpsl5_0.21.2-1+b1_armel.deb ... Unpacking libpsl5:armel (0.21.2-1+b1) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../108-zlib1g_1%3a1.3.dfsg-3_armel.deb ... Unpacking zlib1g:armel (1:1.3.dfsg-3) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../109-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../110-libssh2-1_1.11.0-3_armel.deb ... Unpacking libssh2-1:armel (1.11.0-3) ... Selecting previously unselected package libzstd1:armel. Preparing to unpack .../111-libzstd1_1.5.5+dfsg2-2_armel.deb ... Unpacking libzstd1:armel (1.5.5+dfsg2-2) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../112-libcurl3-gnutls_8.5.0-1_armel.deb ... Unpacking libcurl3-gnutls:armel (8.5.0-1) ... Selecting previously unselected package libcurl4-gnutls-dev:armel. Preparing to unpack .../113-libcurl4-gnutls-dev_8.5.0-1_armel.deb ... Unpacking libcurl4-gnutls-dev:armel (8.5.0-1) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../114-libdeflate0_1.18-1_armel.deb ... Unpacking libdeflate0:armel (1.18-1) ... Selecting previously unselected package libdeflate-dev:armel. Preparing to unpack .../115-libdeflate-dev_1.18-1_armel.deb ... Unpacking libdeflate-dev:armel (1.18-1) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../116-libgomp1_13.2.0-9_armel.deb ... Unpacking libgomp1:armel (13.2.0-9) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../117-libstdc++6_13.2.0-9_armel.deb ... Unpacking libstdc++6:armel (13.2.0-9) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../118-libubsan1_13.2.0-9_armel.deb ... Unpacking libubsan1:armel (13.2.0-9) ... Selecting previously unselected package libgcc-11-dev:armel. Preparing to unpack .../119-libgcc-11-dev_11.4.0-7_armel.deb ... Unpacking libgcc-11-dev:armel (11.4.0-7) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../120-libhtscodecs2_1.6.0-1_armel.deb ... Unpacking libhtscodecs2:armel (1.6.0-1) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../121-liblzma5_5.4.5-0.1_armel.deb ... Unpacking liblzma5:armel (5.4.5-0.1) ... Selecting previously unselected package libhts3:armel. Preparing to unpack .../122-libhts3_1.18+ds-1_armel.deb ... Unpacking libhts3:armel (1.18+ds-1) ... Selecting previously unselected package liblzma-dev:armel. Preparing to unpack .../123-liblzma-dev_5.4.5-0.1_armel.deb ... Unpacking liblzma-dev:armel (5.4.5-0.1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../124-zlib1g-dev_1%3a1.3.dfsg-3_armel.deb ... Unpacking zlib1g-dev:armel (1:1.3.dfsg-3) ... Selecting previously unselected package libhts-dev:armel. Preparing to unpack .../125-libhts-dev_1.18+ds-1_armel.deb ... Unpacking libhts-dev:armel (1.18+ds-1) ... Selecting previously unselected package libtinfo6:armel. Preparing to unpack .../126-libtinfo6_6.4+20231209-1_armel.deb ... Unpacking libtinfo6:armel (6.4+20231209-1) ... Selecting previously unselected package libncurses6:armel. Preparing to unpack .../127-libncurses6_6.4+20231209-1_armel.deb ... Unpacking libncurses6:armel (6.4+20231209-1) ... Selecting previously unselected package libncursesw6:armel. Preparing to unpack .../128-libncursesw6_6.4+20231209-1_armel.deb ... Unpacking libncursesw6:armel (6.4+20231209-1) ... Selecting previously unselected package libncurses-dev:armel. Preparing to unpack .../129-libncurses-dev_6.4+20231209-1_armel.deb ... Unpacking libncurses-dev:armel (6.4+20231209-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../130-libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package libstdc++-11-dev:armel. Preparing to unpack .../131-libstdc++-11-dev_11.4.0-7_armel.deb ... Unpacking libstdc++-11-dev:armel (11.4.0-7) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../132-pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:armel. Preparing to unpack .../133-pkgconf_1.8.1-1_armel.deb ... Unpacking pkgconf:armel (1.8.1-1) ... Selecting previously unselected package pkg-config:armel. Preparing to unpack .../134-pkg-config_1.8.1-1_armel.deb ... Unpacking pkg-config:armel (1.8.1-1) ... Selecting previously unselected package tabix:armel. Preparing to unpack .../135-tabix_1.18+ds-1_armel.deb ... Unpacking tabix:armel (1.18+ds-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../136-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:armel (11.4.0-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up binutils-arm-linux-gnueabi (2.41.50.20231214-1) ... Setting up libicu72:amd64 (72.1-4) ... Setting up bsdextrautils (2.39.3-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.8) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up linux-libc-dev:armel (6.5.13-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up gcc-13-arm-linux-gnueabi-base:amd64 (13.2.0-7cross2) ... Setting up autoconf-archive (20220903-3) ... Setting up file (1:5.45-2) ... Setting up libyaml-perl (1.30-2) ... Setting up linux-libc-dev-armel-cross (6.5.8-1cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up gcc-13-base:armel (13.2.0-9) ... Setting up bash-completion (1:2.11-8) ... Setting up autopoint (0.21-14) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up autoconf (2.71-3) ... Setting up libc6-armel-cross (2.37-12cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libc6-dev-armel-cross (2.37-12cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up gcc-13-cross-base-ports (13.2.0-7cross2) ... Setting up libelf1:amd64 (0.190-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up cpp-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up libgomp1-armel-cross (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armel-cross (13.2.0-7cross2) ... Setting up libstdc++6-armel-cross (13.2.0-7cross2) ... Setting up libatomic1-armel-cross (13.2.0-7cross2) ... Setting up pkgconf:armel (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-arm-linux-gnueabi (4:13.2.1-2) ... Setting up libubsan1-armel-cross (13.2.0-7cross2) ... Setting up pkg-config:armel (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libasan8-armel-cross (13.2.0-7cross2) ... Setting up libgcc-13-dev-armel-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gcc-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armel-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:13.2.1-2) ... Setting up g++-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up debhelper (13.11.8) ... Setting up g++-arm-linux-gnueabi (4:13.2.1-2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armel (12.10) ... Setting up libgcc-s1:armel (13.2.0-9) ... Setting up libc6:armel (2.37-13) ... Setting up libffi8:armel (3.4.4-2) ... Setting up libtasn1-6:armel (4.19.0-3) ... Setting up libbz2-1.0:armel (1.0.8-5+b1) ... Setting up libdb5.3:armel (5.3.28+dfsg2-4) ... Setting up libstdc++6:armel (13.2.0-9) ... Setting up libtinfo6:armel (6.4+20231209-1) ... Setting up libhtscodecs2:armel (1.6.0-1) ... Setting up libzstd1:armel (1.5.5+dfsg2-2) ... Setting up libkeyutils1:armel (1.6.3-2) ... Setting up liblzma5:armel (5.4.5-0.1) ... Setting up libbrotli1:armel (1.1.0-2+b1) ... Setting up libnghttp2-14:armel (1.58.0-1) ... Setting up libdeflate0:armel (1.18-1) ... Setting up zlib1g:armel (1:1.3.dfsg-3) ... Setting up libcrypt1:armel (1:4.4.36-2) ... Setting up libcom-err2:armel (1.47.0-2+b1) ... Setting up libgomp1:armel (13.2.0-9) ... Setting up libasan6:armel (11.4.0-7) ... Setting up libkrb5support0:armel (1.20.1-5) ... Setting up libsasl2-modules-db:armel (2.1.28+dfsg1-4) ... Setting up libnettle8:armel (3.9.1-2) ... Setting up libgmp10:armel (2:6.3.0+dfsg-2) ... Setting up libncurses6:armel (6.4+20231209-1) ... Setting up libp11-kit0:armel (0.25.3-2) ... Setting up libunistring5:armel (1.1-2) ... Setting up libatomic1:armel (13.2.0-9) ... Setting up libncursesw6:armel (6.4+20231209-1) ... Setting up libk5crypto3:armel (1.20.1-5) ... Setting up liblzma-dev:armel (5.4.5-0.1) ... Setting up libubsan1:armel (13.2.0-9) ... Setting up libgcc-11-dev:armel (11.4.0-7) ... Setting up libcrypt-dev:armel (1:4.4.36-2) ... Setting up libdeflate-dev:armel (1.18-1) ... Setting up tabix:armel (1.18+ds-1) ... Setting up libhogweed6:armel (3.9.1-2) ... Setting up libssl3:armel (3.1.4-2) ... Setting up libidn2-0:armel (2.3.4-1+b1) ... Setting up libgnutls30:armel (3.8.2-1) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsasl2-2:armel (2.1.28+dfsg1-4) ... Setting up libssh2-1:armel (1.11.0-3) ... Setting up libkrb5-3:armel (1.20.1-5) ... Setting up libpsl5:armel (0.21.2-1+b1) ... Setting up libldap-2.5-0:armel (2.5.13+dfsg-5) ... Setting up libgssapi-krb5-2:armel (1.20.1-5) ... Setting up libtirpc3:armel (1.3.4+ds-1) ... Setting up libcurl3-gnutls:armel (8.5.0-1) ... Setting up libcurl4-gnutls-dev:armel (8.5.0-1) ... Setting up libtirpc-dev:armel (1.3.4+ds-1) ... Setting up libnsl2:armel (1.3.0-3) ... Setting up libhts3:armel (1.18+ds-1) ... Setting up libnsl-dev:armel (1.3.0-3) ... Setting up libc6-dev:armel (2.37-13) ... Setting up libbz2-dev:armel (1.0.8-5+b1) ... Setting up libncurses-dev:armel (6.4+20231209-1) ... Setting up libstdc++-11-dev:armel (11.4.0-7) ... Setting up zlib1g-dev:armel (1:1.3.dfsg-3) ... Setting up libhts-dev:armel (1.18+ds-1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1 dpkg-dev_1.22.1 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-armel-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-armel-cross_13.2.0-7cross2 linux-libc-dev_6.5.13-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1 binutils-arm-linux-gnueabi_2.41.50.20231214-1 binutils-common_2.41.50.20231214-1 binutils-x86-64-linux-gnu_2.41.50.20231214-1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-arm-linux-gnueabi_13.2.0-7cross2 cpp-arm-linux-gnueabi_4:13.2.1-2 cross-config_2.6.20 crossbuild-essential-armel_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1 dpkg-cross_2.6.20 dpkg-dev_1.22.1 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-arm-linux-gnueabi_13.2.0-7cross2 g++-arm-linux-gnueabi_4:13.2.1-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-arm-linux-gnueabi_13.2.0-7cross2 gcc-13-arm-linux-gnueabi-base_13.2.0-7cross2 gcc-13-base_13.2.0-9 gcc-13-cross-base-ports_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabi_4:13.2.1-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-armel-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-armel-cross_13.2.0-7cross2 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231214-1 libblkid1_2.39.3-2 libbrotli1_1.1.0-2+b1 libbz2-1.0_1.0.8-5+b1 libbz2-dev_1.0.8-5+b1 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-armel-cross_2.37-12cross1 libc6-dev_2.37-13 libc6-dev-armel-cross_2.37-12cross1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41.50.20231214-1 libctf0_2.41.50.20231214-1 libcurl3-gnutls_8.5.0-1 libcurl4-gnutls-dev_8.5.0-1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdpkg-perl_1.22.1 libelf1_0.190-1 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-armel-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-armel-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-armel-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231214-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.2.0-9 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libldap-2.5-0_2.5.13+dfsg-5 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-9 liblz4-1_1.9.4-1 liblzma-dev_5.4.5-0.1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses-dev_6.4+20231209-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libpsl5_0.21.2-1+b1 libquadmath0_13.2.0-9 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+b1 libselinux1_3.5-1+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1 libsmartcols1_2.39.3-2 libss2_1.47.0-2+b1 libssh2-1_1.11.0-3 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-armel-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-armel-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255-1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libubsan1_13.2.0-9 libubsan1-armel-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255-1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b1 libxxhash0_0.8.2-2 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.13-1 linux-libc-dev-armel-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tabix_1.18+ds-1 tar_1.34+dfsg-1.3 tzdata_2023c-11 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.19-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 13), bash-completion, libio-pty-perl , libncurses-dev, libhts-dev (>= 1.17~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix, liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 10709035bb45ef8f210a40515eb3377ff297db8d 5663728 samtools_1.19.orig.tar.gz c2138fc66b17941bdeae982150c64933e5a016fa 21708 samtools_1.19-1.debian.tar.xz Checksums-Sha256: b068f1eb1fcad8bd90296f60ebf3e67343cd076afb004d68bd75525f95218db2 5663728 samtools_1.19.orig.tar.gz af8b22fcef8d24d54f489bebc1630ad30550ffb0cdf07d823f63bc9876cbbdfa 21708 samtools_1.19-1.debian.tar.xz Files: 7d0222ae739a65a9a0c0041cdafdc5a7 5663728 samtools_1.19.orig.tar.gz 0c2ae5210856fd1563061d6c6648bdb4 21708 samtools_1.19-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV8gZoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpnag/+IYBSxSEYaSj5k5xI4vTwLae6R/lA kN7rg44MXnrmo1Yhw24ffT4J93dFWr7fGrPNHBOiwFD0BAJTy+SyyM/asoLVhcdk FMV8ZWHJprw8ZsdI5olCaXaEdgozFow5j3YSlxM2b77YbPTRzfAFRZ2//Grn6IHi 9AeRA7FDkEv2EhzBJYRACLVMdzRkXy/AGVTaewIHEJ+fZqodl6X3fJXWhPcgadOc 4kBfRa9VAIisO7dHoRFRYQuGG6F4KQaFVSLJgJSeEjwAhzO6Z52I8nXOmwUyhcFW ler3gYHYklrzsjRs4KWg7RUPHblNU1MHI/ofk4VaOlHfRiB/wawHPVP/kg2fxM7C nCRi/GuPnsFkgHPL1HyxMiDTDGc1NbO8Raa1b/j3SLrYbEPUl/D3c4Ec8H9B9fpN I9YLy9EOyaW7I8yq9QDs/+qcA9jMvhRSw8C8S3K40mNYrVHNk7QjWr9iPddUINy0 p0e6icrzYa9Y5JQi5e97XMuNjDuVWMdW47nuf6D8Y8P2hsOIIR7Ji3Mvoa+9PZxG nw5lTGUY5m56Fx6FBOLg6OHcXPtNWLstdeigPa0Ovhcy5IRM3bl1rh7eHuC+qNxK WAwvHZcbOhkyRXvclJT0fUOLBvs/CtjDnk/t+s51SCVyTalH5ilGpbORjzSehzWq /QXVbB0ahBdE/Hk= =NFF/ -----END PGP SIGNATURE----- gpgv: Signature made Fri Dec 15 16:40:58 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./samtools_1.19-1.dsc: no acceptable signature found dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.19.orig.tar.gz dpkg-source: info: unpacking samtools_1.19-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.B51Px4i7RR/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-5c7ef1f9-0c8a-4ffb-bd67-0d1b3eeea5af SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.19-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel dpkg-source: info: using options from samtools-1.19/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.armel checking for gawk... no checking for mawk... mawk checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to enable C11 features... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.19"' > version.h echo '#define SAMTOOLS_CC "arm-linux-gnueabi-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/<>@«BUILDPATH»@g' version.h arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_ampliconclip.o bam_ampliconclip.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o amplicon_stats.o amplicon_stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_samples.o bam_samples.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_consensus.o bam_consensus.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_pileup.o consensus_pileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reference.o reference.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reset.o reset.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram_size.o cram_size.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o ./lz4/lz4.o libst.a -lhts -lcurses -lm -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lhts -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DMAQ_LONGREADS -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- \ prefix=/usr install -m0755 -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/share/man/man1 install -p samtools /<>/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /<>/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /<>/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /<>/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/<>' make clean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -m0755 -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -m0755 -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -m0755 -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// install -m0755 -d debian/samtools/usr/share/man/man1 cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done # Disable the executable bit on a dataset. if [ -d debian/samtools-test ] \ ; then chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed \ ; fi make[1]: Leaving directory '/<>' dh_installdocs -a install -m0755 -d debian/samtools/usr/share/doc/samtools install -m0755 -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./debian/README.test debian/samtools/usr/share/doc/samtools chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS.md install -m0755 -d debian/samtools/usr/share/doc/samtools install -p -m0644 debian/.debhelper/generated/samtools/dh_installchangelogs.dch.trimmed debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 NEWS.md debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/<>' dh_installexamples -a install -m0755 -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples rm -f debian/samtools.debhelper.log debian/rules execute_before_dh_installman make[1]: Entering directory '/<>' # Fix whatis entries for subcommands; "samtools subcommand \- desc." # will confuse the lexer, but "samtools-subcommand \- desc." will work. sed -i '/^\.SH NAME/{n;s/^\([^ ]\+\) \([^ ]\+\) \\- /\1-\2 \\- /}' \ debian/*/usr/share/man/man*/*.* # .EX expects a indentation width. sed -i 's/^.EX$/.EX 8/' debian/*/usr/share/man/man*/*.* make[1]: Leaving directory '/<>' dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconclip.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-consensus.1.dh-new debian/samtools/usr/share/man/man1/samtools-consensus.1 mv debian/samtools/usr/share/man/man1/samtools-coverage.1.dh-new debian/samtools/usr/share/man/man1/samtools-coverage.1 mv debian/samtools/usr/share/man/man1/samtools-cram-size.1.dh-new debian/samtools/usr/share/man/man1/samtools-cram-size.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-head.1.dh-new debian/samtools/usr/share/man/man1/samtools-head.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-import.1.dh-new debian/samtools/usr/share/man/man1/samtools-import.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reference.1.dh-new debian/samtools/usr/share/man/man1/samtools-reference.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-reset.1.dh-new debian/samtools/usr/share/man/man1/samtools-reset.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-samples.1.dh-new debian/samtools/usr/share/man/man1/samtools-samples.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -m0755 -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_strip_nondeterminism -a Using 1702653431 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/<>' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_fixperms -a find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -m0755 -d debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi dwz -mdebian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug -- debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/samtools debian/samtools/usr/bin/wgsim dwz: debian/samtools/usr/bin/samtools: DWARF compression not beneficial - old size 711247 new size 732507 arm-linux-gnueabi-objcopy --compress-debug-sections debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug chmod 0644 -- debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug dh_strip -a install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8a arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8a/5788e2dfa5658e01a68c76930f596dcaf355ea.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8a/5788e2dfa5658e01a68c76930f596dcaf355ea.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8a/5788e2dfa5658e01a68c76930f596dcaf355ea.debug debian/samtools/usr/bin/wgsim install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d0 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d0/4f6c724f07e540be71fa87888c9b63248e69a1.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d0/4f6c724f07e540be71fa87888c9b63248e69a1.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/d0/4f6c724f07e540be71fa87888c9b63248e69a1.debug debian/samtools/usr/bin/ace2sam install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/65 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/65/8d0ce3d95cdba1982284d5b3718d7e37c7496a.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/65/8d0ce3d95cdba1982284d5b3718d7e37c7496a.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/65/8d0ce3d95cdba1982284d5b3718d7e37c7496a.debug debian/samtools/usr/bin/md5sum-lite install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/78 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/78/418997455bc0163c8f2566245d89d04d0b5d99.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/78/418997455bc0163c8f2566245d89d04d0b5d99.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/78/418997455bc0163c8f2566245d89d04d0b5d99.debug debian/samtools/usr/bin/md5fa install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/fa arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/fa/49335d54f5d64bb6845033e8832c144ef1aaf3.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/fa/49335d54f5d64bb6845033e8832c144ef1aaf3.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/fa/49335d54f5d64bb6845033e8832c144ef1aaf3.debug debian/samtools/usr/bin/maq2sam-short install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/03 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/03/e8d1a2c85feb45a7452cea1abc84e7f3e300bd.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/03/e8d1a2c85feb45a7452cea1abc84e7f3e300bd.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/03/e8d1a2c85feb45a7452cea1abc84e7f3e300bd.debug debian/samtools/usr/bin/maq2sam-long install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e6 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e6/470ea7d1ec2b4c412d7fcc699a03410bf1c1eb.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e6/470ea7d1ec2b4c412d7fcc699a03410bf1c1eb.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e6/470ea7d1ec2b4c412d7fcc699a03410bf1c1eb.debug debian/samtools/usr/bin/samtools install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/samtools/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/samtools/usr/lib/debug install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym install -m0755 -d debian/.debhelper/samtools dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars debian/samtools/usr/bin/wgsim debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/samtools dh_installdeb -a install -m0755 -d debian/samtools/DEBIAN dh_gencontrol -a install -m0755 -d debian/samtools/DEBIAN echo misc:Depends= >> debian/samtools.substvars echo misc:Pre-Depends= >> debian/samtools.substvars install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=samtools-dbgsym "-DDepends=samtools (= \${binary:Version})" "-DDescription=debug symbols for samtools" "-DBuild-Ids=03e8d1a2c85feb45a7452cea1abc84e7f3e300bd 658d0ce3d95cdba1982284d5b3718d7e37c7496a 78418997455bc0163c8f2566245d89d04d0b5d99 8a5788e2dfa5658e01a68c76930f596dcaf355ea d04f6c724f07e540be71fa87888c9b63248e69a1 e6470ea7d1ec2b4c412d7fcc699a03410bf1c1eb fa49335d54f5d64bb6845033e8832c144ef1aaf3" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/samtools dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/samtools/DEBIAN/control dh_md5sums -a install -m0755 -d debian/samtools/DEBIAN cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.19-1_armel.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.19-1_armel.deb'. dpkg-genbuildinfo --build=any -O../samtools_1.19-1_armel.buildinfo dpkg-genchanges --build=any -O../samtools_1.19-1_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from samtools-1.19/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-16T14:58:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools_1.19-1_armel.changes: ------------------------------ Format: 1.8 Date: Fri, 15 Dec 2023 16:17:11 +0100 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.19-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.19-1) unstable; urgency=medium . * [73082b5] New upstream version 1.19 * [b86781d] d/rules: adjust dh_instalchangelogs. Upstream NEWS file has been renamed NEWS.md. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-dbgsym Architecture: armel Version: 1.19-1 Checksums-Md5: 1b30cd31481761ca5f52c01aec062905 936644 samtools-dbgsym_1.19-1_armel.deb 8f8030c480263b659c980a9e3e27cef9 609440 samtools_1.19-1_armel.deb Checksums-Sha1: a7f9cba58bfaa2bb34fee1b74d4a88299301eb86 936644 samtools-dbgsym_1.19-1_armel.deb 34d1ccc9306e79f2f2a04d9f52141291b3b06ee2 609440 samtools_1.19-1_armel.deb Checksums-Sha256: dd0945a0b2dac0caf2cf62f00b35f144480a102644dea8e7d51b0a072c1e7b4b 936644 samtools-dbgsym_1.19-1_armel.deb 135d64bbc4692e966d78ddf12b8b83a10dfb5276309314f20facde4a6b66770e 609440 samtools_1.19-1_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 16 Dec 2023 14:58:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), autoconf-archive (= 20220903-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), bash-completion (= 1:2.11-8), binutils (= 2.41.50.20231214-1), binutils-common (= 2.41.50.20231214-1), binutils-x86-64-linux-gnu (= 2.41.50.20231214-1), bsdextrautils (= 2.39.3-2), bsdutils (= 1:2.39.3-2), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.4-2+b1), cpp (= 4:13.2.0-2), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-9), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.8), debianutils (= 5.14), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1), dpkg-dev (= 1.22.1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1), libblkid1 (= 2.39.3-2), libbrotli1 (= 1.1.0-2+b1), libbz2-1.0 (= 1.0.8-5+b1), libbz2-dev (= 1.0.8-5+b1), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1), libctf0 (= 2.41.50.20231214-1), libcurl3-gnutls (= 8.5.0-1), libcurl4-gnutls-dev (= 8.5.0-1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.8), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1), libelf1 (= 0.190-1), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-9), libgcc-s1 (= 13.2.0-9), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2), libgnutls30 (= 3.8.2-1), libgomp1 (= 13.2.0-9), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231214-1), libgssapi-krb5-2 (= 1.20.1-5), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 13.2.0-9), libicu72 (= 72.1-4), libidn2-0 (= 2.3.4-1+b1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 13.2.0-9), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.3-2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncurses-dev (= 6.4+20231209-1), libncurses6 (= 6.4+20231209-1), libncursesw6 (= 6.4+20231209-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-2), libpam-modules (= 1.5.2-9.1), libpam-modules-bin (= 1.5.2-9.1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-10), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-1), libpsl5 (= 0.21.2-1+b1), libquadmath0 (= 13.2.0-9), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2+b1), libselinux1 (= 3.5-1+b1), libsframe1 (= 2.41.50.20231214-1), libsmartcols1 (= 2.39.3-2), libssh2-1 (= 1.11.0-3), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1), libtasn1-6 (= 4.19.0-3), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-2), libxml2 (= 2.9.14+dfsg-1.3+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.13-1), login (= 1:4.13+dfsg1-3), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7), perl (= 5.36.0-10), perl-base (= 5.36.0-10), perl-modules-5.36 (= 5.36.0-10), pkg-config (= 1.8.1-1), pkgconf (= 1.8.1-1), pkgconf-bin (= 1.8.1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tabix (= 1.18+ds-1), tar (= 1.34+dfsg-1.3), usrmerge (= 38), util-linux (= 2.39.3-2), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3), zlib1g-dev (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1702653431" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ samtools-dbgsym_1.19-1_armel.deb -------------------------------- new Debian package, version 2.0. size 936644 bytes: control archive=904 bytes. 619 bytes, 12 lines control 828 bytes, 8 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.19-1 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1012 Depends: samtools (= 1.19-1) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 03e8d1a2c85feb45a7452cea1abc84e7f3e300bd 658d0ce3d95cdba1982284d5b3718d7e37c7496a 78418997455bc0163c8f2566245d89d04d0b5d99 8a5788e2dfa5658e01a68c76930f596dcaf355ea d04f6c724f07e540be71fa87888c9b63248e69a1 e6470ea7d1ec2b4c412d7fcc699a03410bf1c1eb fa49335d54f5d64bb6845033e8832c144ef1aaf3 drwxr-xr-x root/root 0 2023-12-15 15:17 ./ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/debug/.build-id/03/ -rw-r--r-- root/root 10792 2023-12-15 15:17 ./usr/lib/debug/.build-id/03/e8d1a2c85feb45a7452cea1abc84e7f3e300bd.debug drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 7200 2023-12-15 15:17 ./usr/lib/debug/.build-id/65/8d0ce3d95cdba1982284d5b3718d7e37c7496a.debug drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 10524 2023-12-15 15:17 ./usr/lib/debug/.build-id/78/418997455bc0163c8f2566245d89d04d0b5d99.debug 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drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-12-15 15:17 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.19-1_armel.deb ------------------------- new Debian package, version 2.0. size 609440 bytes: control archive=2940 bytes. 834 bytes, 17 lines control 5675 bytes, 83 lines md5sums Package: samtools Version: 1.19-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1317 Depends: libc6 (>= 2.34), libhts3 (>= 1.17), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.2.3.3) Suggests: cwltool Section: science Priority: optional Homepage: https://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. drwxr-xr-x root/root 0 2023-12-15 15:17 ./ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/ drwxr-xr-x root/root 0 2023-12-15 15:17 ./usr/bin/ -rwxr-xr-x root/root 17952 2023-12-15 15:17 ./usr/bin/ace2sam -rwxr-xr-x root/root 5443 2023-12-15 15:17 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2023-12-15 15:17 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2023-12-15 15:17 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 3300 2023-12-15 15:17 ./usr/bin/fasta-sanitize.pl -rwxr-xr-x root/root 6121 2023-12-15 15:17 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 9760 2023-12-15 15:17 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 9760 2023-12-15 15:17 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 9760 2023-12-15 15:17 ./usr/bin/md5fa -rwxr-xr-x root/root 5664 2023-12-15 15:17 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2023-12-15 15:17 ./usr/bin/novo2sam.pl -rwxr-xr-x 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root/root 2355 2023-12-15 15:17 ./usr/share/man/man1/samtools-ampliconclip.1.gz -rw-r--r-- root/root 5837 2023-12-15 15:17 ./usr/share/man/man1/samtools-ampliconstats.1.gz -rw-r--r-- root/root 2016 2023-12-15 15:17 ./usr/share/man/man1/samtools-bedcov.1.gz -rw-r--r-- root/root 2301 2023-12-15 15:17 ./usr/share/man/man1/samtools-calmd.1.gz -rw-r--r-- root/root 1541 2023-12-15 15:17 ./usr/share/man/man1/samtools-cat.1.gz -rw-r--r-- root/root 2475 2023-12-15 15:17 ./usr/share/man/man1/samtools-collate.1.gz -rw-r--r-- root/root 6075 2023-12-15 15:17 ./usr/share/man/man1/samtools-consensus.1.gz -rw-r--r-- root/root 2685 2023-12-15 15:17 ./usr/share/man/man1/samtools-coverage.1.gz -rw-r--r-- root/root 3177 2023-12-15 15:17 ./usr/share/man/man1/samtools-cram-size.1.gz -rw-r--r-- root/root 1753 2023-12-15 15:17 ./usr/share/man/man1/samtools-depad.1.gz -rw-r--r-- root/root 3189 2023-12-15 15:17 ./usr/share/man/man1/samtools-depth.1.gz -rw-r--r-- root/root 1685 2023-12-15 15:17 ./usr/share/man/man1/samtools-dict.1.gz -rw-r--r-- root/root 2117 2023-12-15 15:17 ./usr/share/man/man1/samtools-faidx.1.gz -rw-r--r-- root/root 4251 2023-12-15 15:17 ./usr/share/man/man1/samtools-fasta.1.gz lrwxrwxrwx root/root 0 2023-12-15 15:17 ./usr/share/man/man1/samtools-fastq.1.gz -> samtools-fasta.1.gz -rw-r--r-- root/root 1652 2023-12-15 15:17 ./usr/share/man/man1/samtools-fixmate.1.gz -rw-r--r-- root/root 1498 2023-12-15 15:17 ./usr/share/man/man1/samtools-flags.1.gz -rw-r--r-- root/root 2601 2023-12-15 15:17 ./usr/share/man/man1/samtools-flagstat.1.gz -rw-r--r-- root/root 2167 2023-12-15 15:17 ./usr/share/man/man1/samtools-fqidx.1.gz -rw-r--r-- root/root 1334 2023-12-15 15:17 ./usr/share/man/man1/samtools-head.1.gz -rw-r--r-- root/root 1414 2023-12-15 15:17 ./usr/share/man/man1/samtools-idxstats.1.gz -rw-r--r-- root/root 3576 2023-12-15 15:17 ./usr/share/man/man1/samtools-import.1.gz -rw-r--r-- root/root 1950 2023-12-15 15:17 ./usr/share/man/man1/samtools-index.1.gz -rw-r--r-- root/root 3903 2023-12-15 15:17 ./usr/share/man/man1/samtools-markdup.1.gz -rw-r--r-- root/root 3688 2023-12-15 15:17 ./usr/share/man/man1/samtools-merge.1.gz -rw-r--r-- root/root 7504 2023-12-15 15:17 ./usr/share/man/man1/samtools-mpileup.1.gz -rw-r--r-- root/root 1439 2023-12-15 15:17 ./usr/share/man/man1/samtools-phase.1.gz -rw-r--r-- root/root 1678 2023-12-15 15:17 ./usr/share/man/man1/samtools-quickcheck.1.gz -rw-r--r-- root/root 1879 2023-12-15 15:17 ./usr/share/man/man1/samtools-reference.1.gz -rw-r--r-- root/root 1962 2023-12-15 15:17 ./usr/share/man/man1/samtools-reheader.1.gz -rw-r--r-- root/root 2306 2023-12-15 15:17 ./usr/share/man/man1/samtools-reset.1.gz -rw-r--r-- root/root 1470 2023-12-15 15:17 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 2281 2023-12-15 15:17 ./usr/share/man/man1/samtools-samples.1.gz -rw-r--r-- root/root 4722 2023-12-15 15:17 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 2577 2023-12-15 15:17 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 6259 2023-12-15 15:17 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1427 2023-12-15 15:17 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 2046 2023-12-15 15:17 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 7191 2023-12-15 15:17 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 15957 2023-12-15 15:17 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2023-12-15 15:17 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2023-12-15 15:17 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1463 B] Get:5 copy:/<>/apt_archive ./ Packages [1515 B] Fetched 3593 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.8 MB of archives. After this operation, 51.5 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.4-2 [1426 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1 [949 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.21-1 [95.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.60-1 [219 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1 [131 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:73 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:74 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.084-1 [216 kB] Get:75 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.72-1 [187 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1 [60.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.8 MB in 0s (50.5 MB/s) Selecting previously unselected package netbase. 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Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.44.2-1) ... 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Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.084-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.60-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 30356 Build-Time: 49 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 13 Job: samtools_1.19-1 Lintian: pass Machine Architecture: amd64 Package: samtools Package-Time: 74 Source-Version: 1.19-1 Space: 30356 Status: successful Version: 1.19-1 -------------------------------------------------------------------------------- Finished at 2023-12-16T14:58:23Z Build needed 00:01:14, 30356k disk space