sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | samtools 1.24-2 (arm64) Fri, 25 Sep 2026 23:28:54 +0000 | +==============================================================================+ Package: samtools Version: 1.24-2 Source Version: 1.24-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild._tImlAbaXs... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Fri, 25 Sep 2026 23:28:58 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.0 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main arm64 Packages [10.7 MB] Fetched 33.7 MB in 3s (12.2 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Fri, 25 Sep 2026 23:29:03 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5801 kB of source archives. Get:1 http://localhost:3142/debian unstable/main samtools 1.24-2 (dsc) [2267 B] Get:2 http://localhost:3142/debian unstable/main samtools 1.24-2 (tar) [5776 kB] Get:3 http://localhost:3142/debian unstable/main samtools 1.24-2 (diff) [22.7 kB] Fetched 5801 kB in 1s (9354 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 25 Sep 2026 23:29:04 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), bash-completion, libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-arm64:amd64, apt-utils:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 14), bash-completion, libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-arm64:amd64, apt-utils:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-vRvitX/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Sources [869 B] Get:5 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Packages [885 B] Fetched 2363 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-aarch64-linux-gnu bsdextrautils comerr-dev:arm64 cpp-16-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-16-aarch64-linux-gnu gcc-16-aarch64-linux-gnu-base gcc-16-base:arm64 gcc-16-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli-dev:arm64 libbrotli1:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libcurl4-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3t64:arm64 libdebhelper-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1t64 libevent-2.1-7t64:arm64 libffi8:arm64 libfile-stripnondeterminism-perl libgcc-16-dev:arm64 libgcc-16-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0:arm64 libldap-dev:arm64 libldap2:arm64 liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libncurses-dev:arm64 libncurses6:arm64 libncursesw6:arm64 libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64 libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16:arm64 libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8:arm64 libngtcp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf7 libpsl-dev:arm64 libpsl5t64:arm64 librtmp-dev:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libssh2-1-dev:arm64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libstdc++-16-dev:arm64 libstdc++-16-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtasn1-6:arm64 libtasn1-6-dev:arm64 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring-dev:arm64 libunistring5 libunistring5:arm64 libxml2-16 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf sensible-utils tabix:arm64 zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: gnu-standards autoconf-doc binutils-doc doc-base:arm64 gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 manpages-dev:arm64 libcurl4-doc:arm64 libidn-dev:arm64 gmp-doc:arm64 libgmp10-doc:arm64 libmpfr-dev:arm64 dns-root-data:arm64 gnutls-bin:arm64 gnutls-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 ncurses-doc:arm64 libnghttp2-doc:arm64 p11-kit-doc:arm64 libssl-doc:arm64 libstdc++-16-doc:arm64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests bzip2-doc:arm64 ca-certificates:arm64 libarchive-cpio-perl krb5-locales:arm64 libldap-common:arm64 libgpm2:arm64 publicsuffix:arm64 libsasl2-modules:arm64 libtasn1-doc:arm64 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-aarch64-linux-gnu bsdextrautils comerr-dev:arm64 cpp-16-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-16-aarch64-linux-gnu gcc-16-aarch64-linux-gnu-base gcc-16-base:arm64 gcc-16-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli-dev:arm64 libbrotli1:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libcurl4-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3t64:arm64 libdebhelper-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1t64 libevent-2.1-7t64:arm64 libffi8:arm64 libfile-stripnondeterminism-perl libgcc-16-dev:arm64 libgcc-16-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0:arm64 libldap-dev:arm64 libldap2:arm64 liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libncurses-dev:arm64 libncurses6:arm64 libncursesw6:arm64 libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64 libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16:arm64 libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8:arm64 libngtcp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf7 libpsl-dev:arm64 libpsl5t64:arm64 librtmp-dev:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libssh2-1-dev:arm64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libstdc++-16-dev:arm64 libstdc++-16-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtasn1-6:arm64 libtasn1-6-dev:arm64 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring-dev:arm64 libunistring5 libunistring5:arm64 libxml2-16 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils tabix:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After this operation, 551 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://localhost:3142/debian unstable/main amd64 autoconf-archive all 20241016-3 [797 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 bash-completion all 1:2.16.0-8 [319 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:7 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:10 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:11 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.3-1 [102 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:13 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:14 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:19 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.47-6 [1831 kB] Get:20 http://localhost:3142/debian unstable/main arm64 gcc-16-base arm64 16.2.0-3 [38.7 kB] Get:21 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 16.2.0-3 [53.2 kB] Get:22 http://localhost:3142/debian unstable/main arm64 libc-gconv-modules-extra arm64 2.43-6 [1128 kB] Get:23 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.43-6 [1460 kB] Get:24 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.43-6 [1692 kB] Get:25 http://localhost:3142/debian unstable/main arm64 libcom-err2 arm64 1.47.4-1+b1 [19.4 kB] Get:26 http://localhost:3142/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.4-1+b1 [51.4 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gcc-16-aarch64-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-16-aarch64-linux-gnu amd64 16.2.0-3cross1 [13.2 MB] Get:29 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:16.1.0-3 [4468 B] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.43-3cross8 [1224 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 16.2.0-3cross1 [53.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 16.2.0-3cross1 [100 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 16.2.0-3cross1 [26.5 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 16.2.0-3cross1 [10.5 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 16.2.0-3cross1 [452 kB] Get:37 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 16.2.0-3cross1 [212 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 16.2.0-3cross1 [433 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 16.2.0-3cross1 [626 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 16.2.0-3cross1 [195 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 16.2.0-3cross1 [270 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-arm64-cross all 16.2.0-3cross1 [2577 kB] Get:43 http://localhost:3142/debian unstable/main amd64 gcc-16-aarch64-linux-gnu amd64 16.2.0-3cross1 [25.8 MB] Get:44 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:16.1.0-3 [1448 B] Get:45 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 7.2.7-1 [12.0 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.43-3cross8 [1686 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-arm64-cross all 16.2.0-3cross1 [2966 kB] Get:48 http://localhost:3142/debian unstable/main amd64 g++-16-aarch64-linux-gnu amd64 16.2.0-3cross1 [14.5 MB] Get:49 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:16.1.0-3 [1200 B] Get:50 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:51 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:56 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:57 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:58 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:61 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:62 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:63 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:64 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:65 http://localhost:3142/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-3 [30.2 kB] Get:66 http://localhost:3142/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-3 [74.7 kB] Get:67 http://localhost:3142/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6+b2 [9444 B] Get:68 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-4 [258 kB] Get:69 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.2-3 [87.9 kB] Get:70 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.6.4-1 [2788 kB] Get:71 http://localhost:3142/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-3 [314 kB] Get:72 http://localhost:3142/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-3 [125 kB] Get:73 http://localhost:3142/debian unstable/main arm64 libgssrpc4t64 arm64 1.22.1-3 [54.7 kB] Get:74 http://localhost:3142/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.22.1-3 [38.6 kB] Get:75 http://localhost:3142/debian unstable/main arm64 libkdb5-10t64 arm64 1.22.1-3 [39.8 kB] Get:76 http://localhost:3142/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.22.1-3 [51.6 kB] Get:77 http://localhost:3142/debian unstable/main arm64 krb5-multidev arm64 1.22.1-3 [125 kB] Get:78 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 16.2.0-3 [2673 kB] Get:79 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 16.2.0-3 [9808 B] Get:80 http://localhost:3142/debian unstable/main arm64 libbrotli1 arm64 1.2.0-4+b1 [293 kB] Get:81 http://localhost:3142/debian unstable/main arm64 libbrotli-dev arm64 1.2.0-4+b1 [308 kB] Get:82 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6+b2 [36.6 kB] Get:83 http://localhost:3142/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6+b2 [30.9 kB] Get:84 http://localhost:3142/debian unstable/main arm64 libnghttp3-9 arm64 1.17.0-1 [63.0 kB] Get:85 http://localhost:3142/debian unstable/main arm64 libngtcp2-16 arm64 1.24.0-1 [129 kB] Get:86 http://localhost:3142/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-5+b2 [543 kB] Get:87 http://localhost:3142/debian unstable/main arm64 libnettle8t64 arm64 3.10.2-1+b1 [304 kB] Get:88 http://localhost:3142/debian unstable/main arm64 libhogweed6t64 arm64 3.10.2-1+b1 [330 kB] Get:89 http://localhost:3142/debian unstable/main arm64 libunistring5 arm64 1.4.2-1 [455 kB] Get:90 http://localhost:3142/debian unstable/main arm64 libidn2-0 arm64 2.3.8-5 [107 kB] Get:91 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.8.0-2 [25.9 kB] Get:92 http://localhost:3142/debian unstable/main arm64 libp11-kit0 arm64 0.26.5-1 [440 kB] Get:93 http://localhost:3142/debian unstable/main arm64 libtasn1-6 arm64 4.21.0-2+b1 [46.9 kB] Get:94 http://localhost:3142/debian unstable/main arm64 libgnutls30t64 arm64 3.8.13-1 [1434 kB] Get:95 http://localhost:3142/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-11+b1 [626 kB] Get:96 http://localhost:3142/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-11 [17.1 kB] Get:97 http://localhost:3142/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-11 [52.4 kB] Get:98 http://localhost:3142/debian unstable/main arm64 libldap2 arm64 2.6.14+dfsg-2 [173 kB] Get:99 http://localhost:3142/debian unstable/main arm64 libnghttp2-14 arm64 1.70.0-1 [87.9 kB] Get:100 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.24.0-1 [22.5 kB] Get:101 http://localhost:3142/debian unstable/main arm64 libpsl5t64 arm64 0.23.3-1 [61.0 kB] Get:102 http://localhost:3142/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-6 [235 kB] Get:103 http://localhost:3142/debian unstable/main arm64 libcurl4-gnutls arm64 8.23.0~rc1-2 [392 kB] Get:104 http://localhost:3142/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.13-stable-1 [169 kB] Get:105 http://localhost:3142/debian unstable/main arm64 libunbound8 arm64 1.26.1-1 [579 kB] Get:106 http://localhost:3142/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.13-1 [493 kB] Get:107 http://localhost:3142/debian unstable/main arm64 libidn2-dev arm64 2.3.8-5 [100 kB] Get:108 http://localhost:3142/debian unstable/main arm64 libp11-kit-dev arm64 0.26.5-1 [226 kB] Get:109 http://localhost:3142/debian unstable/main arm64 libtasn1-6-dev arm64 4.21.0-2+b1 [96.2 kB] Get:110 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 16.2.0-3 [700 kB] Get:111 http://localhost:3142/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5+b2 [328 kB] Get:112 http://localhost:3142/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5+b2 [632 kB] Get:113 http://localhost:3142/debian unstable/main arm64 nettle-dev arm64 3.10.2-1+b1 [1318 kB] Get:114 http://localhost:3142/debian unstable/main arm64 libgnutls28-dev arm64 3.8.13-1 [1456 kB] Get:115 http://localhost:3142/debian unstable/main arm64 libkrb5-dev arm64 1.22.1-3 [14.0 kB] Get:116 http://localhost:3142/debian unstable/main arm64 libldap-dev arm64 2.6.14+dfsg-2 [298 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:118 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:119 http://localhost:3142/debian unstable/main arm64 pkgconf arm64 2.5.1-4 [33.6 kB] Get:120 http://localhost:3142/debian unstable/main arm64 libnghttp2-dev arm64 1.70.0-1 [128 kB] Get:121 http://localhost:3142/debian unstable/main arm64 libnghttp3-dev arm64 1.17.0-1 [92.5 kB] Get:122 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.24.0-1 [23.4 kB] Get:123 http://localhost:3142/debian unstable/main arm64 libngtcp2-dev arm64 1.24.0-1 [194 kB] Get:124 http://localhost:3142/debian unstable/main arm64 libunistring-dev arm64 1.4.2-1 [622 kB] Get:125 http://localhost:3142/debian unstable/main arm64 libpsl-dev arm64 0.23.3-1 [30.1 kB] Get:126 http://localhost:3142/debian unstable/main arm64 librtmp1 arm64 2.6-1 [57.4 kB] Get:127 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.2-3 [916 kB] Get:128 http://localhost:3142/debian unstable/main arm64 librtmp-dev arm64 2.6-1 [174 kB] Get:129 http://localhost:3142/debian unstable/main arm64 libssl-dev arm64 3.6.4-1 [3439 kB] Get:130 http://localhost:3142/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-6 [387 kB] Get:131 http://localhost:3142/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-4 [327 kB] Get:132 http://localhost:3142/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.23.0~rc1-2 [536 kB] Get:133 http://localhost:3142/debian unstable/main arm64 libdeflate0 arm64 1.25-1 [41.4 kB] Get:134 http://localhost:3142/debian unstable/main arm64 libdeflate-dev arm64 1.25-1 [50.3 kB] Get:135 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 16.2.0-3 [132 kB] Get:136 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 16.2.0-3 [24.2 kB] Get:137 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 16.2.0-3 [1212 kB] Get:138 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 16.2.0-3 [2449 kB] Get:139 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 16.2.0-3 [1079 kB] Get:140 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 16.2.0-3 [1505 kB] Get:141 http://localhost:3142/debian unstable/main arm64 libgcc-16-dev arm64 16.2.0-3 [2390 kB] Get:142 http://localhost:3142/debian unstable/main arm64 libhtscodecs2 arm64 1.6.7-1 [75.7 kB] Get:143 http://localhost:3142/debian unstable/main arm64 liblzma5 arm64 5.8.4-1 [342 kB] Get:144 http://localhost:3142/debian unstable/main arm64 libhts3t64 arm64 1.24-3 [433 kB] Get:145 http://localhost:3142/debian unstable/main arm64 liblzma-dev arm64 5.8.4-1 [380 kB] Get:146 http://localhost:3142/debian unstable/main arm64 libhts-dev arm64 1.24-3 [1751 kB] Get:147 http://localhost:3142/debian unstable/main arm64 libtinfo6 arm64 6.6+20260608-2 [345 kB] Get:148 http://localhost:3142/debian unstable/main arm64 libncurses6 arm64 6.6+20260608-2 [97.2 kB] Get:149 http://localhost:3142/debian unstable/main arm64 libncursesw6 arm64 6.6+20260608-2 [125 kB] Get:150 http://localhost:3142/debian unstable/main arm64 libncurses-dev arm64 6.6+20260608-2 [344 kB] Get:151 http://localhost:3142/debian unstable/main arm64 libstdc++-16-dev arm64 16.2.0-3 [2580 kB] Get:152 http://localhost:3142/debian unstable/main arm64 tabix arm64 1.24-3 [462 kB] Preconfiguring packages ... Fetched 126 MB in 1s (126 MB/s) Selecting previously unselected package autoconf-archive. (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20241016-3_all.deb ... Unpacking autoconf-archive (20241016-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package bash-completion. Preparing to unpack .../002-bash-completion_1%3a2.16.0-8_all.deb ... Unpacking bash-completion (1:2.16.0-8) ... Replaced by files in installed package dpkg (1.23.11) ... Replaced by files in installed package dpkg-dev (1.23.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. 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Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../105-libidn2-dev_2.3.8-5_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.8-5) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../106-libp11-kit-dev_0.26.5-1_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.26.5-1) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../107-libtasn1-6-dev_4.21.0-2+b1_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.21.0-2+b1) ... Selecting previously unselected package libstdc++6:arm64. Preparing to unpack .../108-libstdc++6_16.2.0-3_arm64.deb ... Unpacking libstdc++6:arm64 (16.2.0-3) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../109-libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5+b2) ... Selecting previously unselected package libgmp-dev:arm64. 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Unpacking libngtcp2-dev:arm64 (1.24.0-1) ... Selecting previously unselected package libunistring-dev:arm64. Preparing to unpack .../122-libunistring-dev_1.4.2-1_arm64.deb ... Unpacking libunistring-dev:arm64 (1.4.2-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../123-libpsl-dev_0.23.3-1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.23.3-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../124-librtmp1_2.6-1_arm64.deb ... Unpacking librtmp1:arm64 (2.6-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../125-zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../126-librtmp-dev_2.6-1_arm64.deb ... Unpacking librtmp-dev:arm64 (2.6-1) ... Selecting previously unselected package libssl-dev:arm64. 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Setting up file (1:5.47-4) ... Setting up cpp-16-aarch64-linux-gnu (16.2.0-3cross1) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up cpp-aarch64-linux-gnu (4:16.1.0-3) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up bash-completion (1:2.16.0-8) ... Setting up libc6-arm64-cross (2.43-3cross8) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up libitm1-arm64-cross (16.2.0-3cross1) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up linux-libc-dev-arm64-cross (7.2.7-1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libgcc-s1-arm64-cross (16.2.0-3cross1) ... Setting up libatomic1-arm64-cross (16.2.0-3cross1) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up liblsan0-arm64-cross (16.2.0-3cross1) ... Setting up libgomp1-arm64-cross (16.2.0-3cross1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libhwasan0-arm64-cross (16.2.0-3cross1) ... Setting up libc6-dev-arm64-cross (2.43-3cross8) ... Setting up pkgconf:arm64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (16.2.0-3cross1) ... Setting up dh-autoreconf (23) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up libasan8-arm64-cross (16.2.0-3cross1) ... Setting up libtsan2-arm64-cross (16.2.0-3cross1) ... Setting up libubsan1-arm64-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-arm64-cross (16.2.0-3cross1) ... Setting up libstdc++-16-dev-arm64-cross (16.2.0-3cross1) ... Setting up gcc-16-aarch64-linux-gnu (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up gcc-aarch64-linux-gnu (4:16.1.0-3) ... Setting up g++-16-aarch64-linux-gnu (16.2.0-3cross1) ... Setting up g++-aarch64-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-arm64 (12.12) ... Setting up libgcc-s1:arm64 (16.2.0-3) ... Setting up libc6:arm64 (2.43-6) ... Setting up libnghttp3-9:arm64 (1.17.0-1) ... Setting up libnghttp3-dev:arm64 (1.17.0-1) ... Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-11+b1) ... Setting up libffi8:arm64 (3.8.0-2) ... Setting up libhwasan0:arm64 (16.2.0-3) ... Setting up libasan8:arm64 (16.2.0-3) ... Setting up libtasn1-6:arm64 (4.21.0-2+b1) ... Setting up libc6-dev:arm64 (2.43-6) ... Setting up libngtcp2-16:arm64 (1.24.0-1) ... Setting up libtsan2:arm64 (16.2.0-3) ... Setting up libbz2-1.0:arm64 (1.0.8-6+b2) ... Setting up libtasn1-6-dev:arm64 (4.21.0-2+b1) ... Setting up libstdc++6:arm64 (16.2.0-3) ... Setting up liblsan0:arm64 (16.2.0-3) ... Setting up libitm1:arm64 (16.2.0-3) ... Setting up libtinfo6:arm64 (6.6+20260608-2) ... Setting up libbz2-dev:arm64 (1.0.8-6+b2) ... Setting up libhtscodecs2:arm64 (1.6.7-1) ... Setting up libzstd1:arm64 (1.5.7+dfsg-4) ... Setting up libkeyutils1:arm64 (1.6.3-6+b2) ... Setting up libzstd-dev:arm64 (1.5.7+dfsg-4) ... Setting up liblzma5:arm64 (5.8.4-1) ... Setting up libbrotli1:arm64 (1.2.0-4+b1) ... Setting up libnghttp2-14:arm64 (1.70.0-1) ... Setting up libdeflate0:arm64 (1.25-1) ... Setting up libevent-2.1-7t64:arm64 (2.1.13-stable-1) ... Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libcom-err2:arm64 (1.47.4-1+b1) ... Setting up libngtcp2-dev:arm64 (1.24.0-1) ... Setting up libgomp1:arm64 (16.2.0-3) ... Setting up libkrb5support0:arm64 (1.22.1-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-11) ... Setting up libnettle8t64:arm64 (3.10.2-1+b1) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-5+b2) ... Setting up libncurses6:arm64 (6.6+20260608-2) ... Setting up libp11-kit0:arm64 (0.26.5-1) ... Setting up comerr-dev:arm64 (2.1-1.47.4-1+b1) ... Setting up libunistring5:arm64 (1.4.2-1) ... Setting up libatomic1:arm64 (16.2.0-3) ... Setting up libncursesw6:arm64 (6.6+20260608-2) ... Setting up libk5crypto3:arm64 (1.22.1-3) ... Setting up liblzma-dev:arm64 (5.8.4-1) ... Setting up libubsan1:arm64 (16.2.0-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:arm64 (3.10.2-1+b1) ... Setting up libdeflate-dev:arm64 (1.25-1) ... Setting up tabix:arm64 (1.24-3) ... Setting up libbrotli-dev:arm64 (1.2.0-4+b1) ... Setting up libp11-kit-dev:arm64 (0.26.5-1) ... Setting up libunistring-dev:arm64 (1.4.2-1) ... Setting up libnghttp2-dev:arm64 (1.70.0-1) ... Setting up libncurses-dev:arm64 (6.6+20260608-2) ... Setting up libgcc-16-dev:arm64 (16.2.0-3) ... Setting up libssl3t64:arm64 (3.6.4-1) ... Setting up libidn2-0:arm64 (2.3.8-5) ... Setting up libunbound8:arm64 (1.26.1-1) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:arm64 (16.2.0-3) ... Setting up libssl-dev:arm64 (3.6.4-1) ... Setting up libidn2-dev:arm64 (2.3.8-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-11) ... Setting up libkrb5-3:arm64 (1.22.1-3) ... Setting up libssh2-1t64:arm64 (1.11.1-6) ... Setting up libldap2:arm64 (2.6.14+dfsg-2) ... Setting up libgnutls30t64:arm64 (3.8.13-1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:arm64 (3.10.2-1+b1) ... Setting up libpsl5t64:arm64 (0.23.3-1) ... Setting up libpsl-dev:arm64 (0.23.3-1) ... Setting up libgnutls-dane0t64:arm64 (3.8.13-1) ... Setting up librtmp1:arm64 (2.6-1) ... Setting up libldap-dev:arm64 (2.6.14+dfsg-2) ... Setting up libgssapi-krb5-2:arm64 (1.22.1-3) ... Setting up libssh2-1-dev:arm64 (1.11.1-6) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.24.0-1) ... Setting up libgnutls28-dev:arm64 (3.8.13-1) ... Setting up libcurl4-gnutls:arm64 (8.23.0~rc1-2) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.24.0-1) ... Setting up libgssrpc4t64:arm64 (1.22.1-3) ... Setting up librtmp-dev:arm64 (2.6-1) ... Setting up libhts3t64:arm64 (1.24-3) ... Setting up libkadm5clnt-mit12:arm64 (1.22.1-3) ... Setting up libkdb5-10t64:arm64 (1.22.1-3) ... Setting up libkadm5srv-mit12:arm64 (1.22.1-3) ... Setting up krb5-multidev:arm64 (1.22.1-3) ... Setting up libkrb5-dev:arm64 (1.22.1-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.23.0~rc1-2) ... Setting up libhts-dev:arm64 (1.24-3) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... +------------------------------------------------------------------------------+ | Check architectures Fri, 25 Sep 2026 23:29:19 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 25 Sep 2026 23:29:19 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-arm64-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-arm64-cross_16.2.0-3cross1 linux-libc-dev_7.2.7-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 autoconf-archive_20241016-3 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 bash-completion_1:2.16.0-8 binutils_2.47-6 binutils-aarch64-linux-gnu_2.47-6 binutils-common_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b1 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-aarch64-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-aarch64-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-arm64_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-aarch64-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-3 g++-aarch64-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 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libxxhash0_0.8.3-2+b2 libzstd-dev_1.5.7+dfsg-4 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.7-1 linux-libc-dev-arm64-cross_7.2.7-1 login_1:4.16.0-2+really2.42.3-1 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tabix_1.24-3 tar_1.35+dfsg-6 util-linux_2.42.3-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 25 Sep 2026 23:29:19 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.24-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 14), bash-completion, libio-pty-perl , libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 25ed9a511412660b4a3921b23f1f716fa71b7b2a 5776293 samtools_1.24.orig.tar.gz 31c88260b87917b1ee5ab12572ee3dbb0904f4e3 22712 samtools_1.24-2.debian.tar.xz Checksums-Sha256: 8a3dab0eddb4dc4bf795ad84c12e5bd82f31d831b24ce54c1a576c3151343805 5776293 samtools_1.24.orig.tar.gz 69c24f12c3af0a8cb0bf0d5d644735800870349d4df28f0667f8ef8584d664eb 22712 samtools_1.24-2.debian.tar.xz Files: f9f160a7a343441b19dcf859d3cba656 5776293 samtools_1.24.orig.tar.gz 0dbdf0731eefeb5fd96d437269d3e061 22712 samtools_1.24-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmqxAskRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGucQ/+OdaU6aE5DEtmE2V2e0bLD+Ww3Pfufmkm 2Jm9aTIiC8MFehebVT72TI8RVimKLW+jb7UFonMhz4X1DVdmxfSfpHkohV9tHghT VwEf2IPQXfJQpfmMLfvScWRMj1uiwfVTG3iozghGQV2IGauC5CgaaGLXlk9O5Hfe 5MclJDErNPVOVA3bRWw1XuNbj40YfZrnldrQE6fnBSr/Pwcfi/tzhjYtIK0TXGZH mByxkM45W//NCvvKHO2z0TZbBjZkyQExEX4X2YStSytLam9shHE9lUav0WMFQ/Ew W75Ol6pkJIselsIvH2zLfZCneSmLPj0ypPkwpLDeVfZ//eJlR1yaxqQg5jG5qRNU hlEdmFPggnKgCMlEVhJTD/IlJrPM4wU62j83XQwK/FfWEZyvzxzqms6yFJFNbtYr dE14V5QTzoy/mFLAwIDIS0bUJUVxuV86R+78h1T4zD0XBPEFRGXjEtLARm3nj2iW 9OoaFQz2H9+nTXJ/6gNKYvcOZPXNiGxJtWk/SvQCcmP19DnX6IULeVg+MAKyqxG8 WrM0f1WPC0iw8cNXY1S99X0bvuuYjAdu9DFYZ1p2dFxR3Hagst6O1QSeZF1CvGTv 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---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.PJSKNt6DWz/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.24-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from /build/reproducible-path/samtools-1.24/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/consensus && rm -f *.bam *.bam.csi cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* *.fa.fai anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai cd test/stat && rm -f *.fa.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i -v autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: subdirectory $HTSDIR not present autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force configure.ac:71: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:71: the top level autoreconf: running: /usr/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/samtools-1.24' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:71: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:71: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --with-htslib=system checking for gawk... no checking for mawk... mawk checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C23 features... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for aarch64-linux-gnu-gcc options to detect undeclared functions... none needed checking for aarch64-linux-gnu-gcc options to ignore future-version functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking for aarch64-linux-gnu-gcc option to support large files... none needed checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" CPPFLAGS="\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/samtools-1.24' aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.24"' > version.h echo '#define SAMTOOLS_CC "aarch64-linux-gnu-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/build/reproducible-path/samtools-1.24@«BUILDPATH»@g' version.h aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C bam_split.c: In function ‘prep_sam_file’: bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ bam_split.c: In function ‘init’: bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_ampliconclip.o bam_ampliconclip.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o amplicon_stats.o amplicon_stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_samples.o bam_samples.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_consensus.o bam_consensus.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_pileup.o consensus_pileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reference.o reference.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reset.o reset.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram_size.o cram_size.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_checksum.o bam_checksum.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C sam_utils.c: In function ‘auto_index’: sam_utils.c:122:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 122 | char *delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o bam_checksum.o ./lz4/lz4.o libst.a -lhts -lcurses -lm -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lhts -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMAQ_LONGREADS -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_count_rg.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_expand_format_string.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_parse_args.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C aarch64-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_auto_install -- \ prefix=/usr install -m0755 -d /build/reproducible-path/samtools-1.24/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/samtools-1.24/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/build/reproducible-path/samtools-1.24' mkdir -p -m 755 /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin /build/reproducible-path/samtools-1.24/debian/tmp/usr/share/man/man1 install -p samtools /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/seq_cache_populate.py misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /build/reproducible-path/samtools-1.24/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' chmod -R u\+rwX /build/reproducible-path/samtools-1.24/debian/tmp make clean make[2]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/consensus && rm -f *.bam *.bam.csi cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* *.fa.fai anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai cd test/stat && rm -f *.fa.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_install install -m0755 -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -m0755 -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -m0755 -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// install -m0755 -d debian/samtools/usr/share/man/man1 cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done # Disable the executable bit on a dataset. if [ -d debian/samtools-test ] \ ; then chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed \ ; fi make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installdocs -a install -m0755 -d debian/samtools/usr/share/doc/samtools install -m0755 -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./debian/README.test debian/samtools/usr/share/doc/samtools chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_installchangelogs NEWS.md install -m0755 -d debian/samtools/usr/share/doc/samtools install -p -m0644 debian/.debhelper/generated/samtools/dh_installchangelogs.dch.trimmed debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 NEWS.md debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installexamples -a install -m0755 -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples rm -f debian/samtools.debhelper.log debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/samtools-1.24' # Fix whatis entries for subcommands; "samtools subcommand \- desc." # will confuse the lexer, but "samtools-subcommand \- desc." will work. sed -i '/^\.SH NAME/{n;s/^\([^ ]\+\) \([^ ]\+\) \\- /\1-\2 \\- /}' \ debian/*/usr/share/man/man*/*.* # .EX expects a indentation width. sed -i 's/^.EX$/.EX 8/' debian/*/usr/share/man/man*/*.* make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-checksum.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconclip.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-checksum.1.dh-new debian/samtools/usr/share/man/man1/samtools-checksum.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-consensus.1.dh-new debian/samtools/usr/share/man/man1/samtools-consensus.1 mv debian/samtools/usr/share/man/man1/samtools-coverage.1.dh-new debian/samtools/usr/share/man/man1/samtools-coverage.1 mv debian/samtools/usr/share/man/man1/samtools-cram-size.1.dh-new debian/samtools/usr/share/man/man1/samtools-cram-size.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-head.1.dh-new debian/samtools/usr/share/man/man1/samtools-head.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-import.1.dh-new debian/samtools/usr/share/man/man1/samtools-import.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reference.1.dh-new debian/samtools/usr/share/man/man1/samtools-reference.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-reset.1.dh-new debian/samtools/usr/share/man/man1/samtools-reset.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-samples.1.dh-new debian/samtools/usr/share/man/man1/samtools-samples.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-checksum.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -m0755 -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_missing -a dh_strip -a install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/5d aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/5d/2ff0ef05e76846ded05882bb2bbcc10b8a2a1e.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/5d/2ff0ef05e76846ded05882bb2bbcc10b8a2a1e.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/5d/2ff0ef05e76846ded05882bb2bbcc10b8a2a1e.debug debian/samtools/usr/bin/wgsim install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/be aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/be/6640f69ea1aaf13ad848f28f3888e64ad58c93.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/be/6640f69ea1aaf13ad848f28f3888e64ad58c93.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/be/6640f69ea1aaf13ad848f28f3888e64ad58c93.debug debian/samtools/usr/bin/md5sum-lite install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/05 aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/05/ea898d017cb42491bdffd0b47926fdd1622957.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/05/ea898d017cb42491bdffd0b47926fdd1622957.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/05/ea898d017cb42491bdffd0b47926fdd1622957.debug debian/samtools/usr/bin/md5fa install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/0e aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/0e/f28894e7c0fcddef89c10e123b3f92a71bdc20.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/0e/f28894e7c0fcddef89c10e123b3f92a71bdc20.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/0e/f28894e7c0fcddef89c10e123b3f92a71bdc20.debug debian/samtools/usr/bin/maq2sam-short install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a2 aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a2/bb73ed11390b0f7f692b61602106b4256bcf1f.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a2/bb73ed11390b0f7f692b61602106b4256bcf1f.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a2/bb73ed11390b0f7f692b61602106b4256bcf1f.debug debian/samtools/usr/bin/maq2sam-long install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a4 aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a4/958a7fa7f5387680c1da2fb53658afb115bfb1.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a4/958a7fa7f5387680c1da2fb53658afb115bfb1.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/a4/958a7fa7f5387680c1da2fb53658afb115bfb1.debug debian/samtools/usr/bin/ace2sam install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/1c aarch64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/1c/e4f7fc896a153836b3e6a2379251fdd4e06872.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/1c/e4f7fc896a153836b3e6a2379251fdd4e06872.debug aarch64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools aarch64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/1c/e4f7fc896a153836b3e6a2379251fdd4e06872.debug debian/samtools/usr/bin/samtools install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym install -m0755 -d debian/.debhelper/samtools dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars --package=samtools debian/samtools/usr/bin/wgsim debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/samtools dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_fixperms -a find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_strip_nondeterminism -a Using 1789984707 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-checksum.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-checksum.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/build/reproducible-path/samtools-1.24' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_installdeb -a install -m0755 -d debian/samtools/DEBIAN dh_computeautosubstvars -a mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars dh_gencontrol -a install -m0755 -d debian/samtools/DEBIAN install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools-dbgsym -ldebian/changelog -T/dev/null -cdebian/.debhelper/generated/samtools/rewritten-dctrl -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=samtools-dbgsym -DDepends="samtools (= \${binary:Version})" -DDescription="debug symbols for samtools" -DBuild-Ids="05ea898d017cb42491bdffd0b47926fdd1622957 0ef28894e7c0fcddef89c10e123b3f92a71bdc20 1ce4f7fc896a153836b3e6a2379251fdd4e06872 5d2ff0ef05e76846ded05882bb2bbcc10b8a2a1e a2bb73ed11390b0f7f692b61602106b4256bcf1f a4958a7fa7f5387680c1da2fb53658afb115bfb1 be6640f69ea1aaf13ad848f28f3888e64ad58c93" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -cdebian/.debhelper/generated/samtools/rewritten-dctrl -Pdebian/samtools dpkg-gencontrol: warning: Depends field of package samtools: substitution variable ${misc:Depends} used, but is not defined chmod 0644 -- debian/samtools/DEBIAN/control dh_md5sums -a install -m0755 -d debian/samtools/DEBIAN cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.24-2_arm64.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.24-2_arm64.deb'. dpkg-genbuildinfo --build=any -O../samtools_1.24-2_arm64.buildinfo dpkg-genchanges --build=any -O../samtools_1.24-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/samtools-1.24/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-25T23:30:15Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Fri, 25 Sep 2026 23:30:15 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/samtools-1.24/ ---------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/samtools-1.24/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 25 Sep 2026 23:30:15 +0000 | +------------------------------------------------------------------------------+ samtools_1.24-2_arm64.changes: ------------------------------ Format: 1.8 Date: Mon, 21 Sep 2026 11:58:27 +0200 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.24-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.24-2) unstable; urgency=medium . * Upload to unstable Checksums-Sha1: 932296503a27df23777faefabff3c38fb2946390 1197780 samtools-dbgsym_1.24-2_arm64.deb bfc0a6336042218b085894c798a611b3c9b49045 6828 samtools_1.24-2_arm64.buildinfo 4e33242c574052197935f25d1ba625607d775bbd 677996 samtools_1.24-2_arm64.deb Checksums-Sha256: e28b68ea00c5b9c8bb1d10d70630eda5abb73a278dc91ff3a2e1d8bebf1b4066 1197780 samtools-dbgsym_1.24-2_arm64.deb 585db32b31eecb27f84a6bb4a0a22a45d14522073dafb22460f74c836079d5af 6828 samtools_1.24-2_arm64.buildinfo 72dbbe074d7748981d0d3199aaeda5018c490717e04f78f50e2f759f75d22e5d 677996 samtools_1.24-2_arm64.deb Files: 5be72395a3c0ad18d4998d7c48fefd07 1197780 debug optional samtools-dbgsym_1.24-2_arm64.deb ccb370d5e73e6fd4787ed8b7e98e40bd 6828 science optional samtools_1.24-2_arm64.buildinfo 1e42923b81504e6ab424aa5a87c0180a 677996 science optional samtools_1.24-2_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 25 Sep 2026 23:30:15 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-dbgsym Architecture: arm64 Version: 1.24-2 Checksums-Md5: 5be72395a3c0ad18d4998d7c48fefd07 1197780 samtools-dbgsym_1.24-2_arm64.deb 1e42923b81504e6ab424aa5a87c0180a 677996 samtools_1.24-2_arm64.deb Checksums-Sha1: 932296503a27df23777faefabff3c38fb2946390 1197780 samtools-dbgsym_1.24-2_arm64.deb 4e33242c574052197935f25d1ba625607d775bbd 677996 samtools_1.24-2_arm64.deb Checksums-Sha256: e28b68ea00c5b9c8bb1d10d70630eda5abb73a278dc91ff3a2e1d8bebf1b4066 1197780 samtools-dbgsym_1.24-2_arm64.deb 72dbbe074d7748981d0d3199aaeda5018c490717e04f78f50e2f759f75d22e5d 677996 samtools_1.24-2_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 25 Sep 2026 23:30:14 +0000 Build-Path: /build/reproducible-path/samtools-1.24 Installed-Build-Depends: autoconf (= 2.73-2), autoconf-archive (= 20241016-3), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), bash-completion (= 1:2.16.0-8), binutils (= 2.47-6), binutils-common (= 2.47-6), binutils-x86-64-linux-gnu (= 2.47-6), bsdextrautils (= 2.42.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), comerr-dev (= 2.1-1.47.4-1+b1), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47-6), libblkid1 (= 2.42.3-1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-6), libc-dev-bin (= 2.43-6), libc-gconv-modules-extra (= 2.43-6), libc6 (= 2.43-6), libc6-dev (= 2.43-6), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcurl4-gnutls (= 8.23.0~rc1-2), libcurl4-gnutls-dev (= 8.23.0~rc1-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libhogweed6t64 (= 3.10.2-1+b1), libhts-dev (= 1.24-3), libhts3t64 (= 1.24-3), libhtscodecs2 (= 1.6.7-1), libhwasan0 (= 16.2.0-3), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-3), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.3-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncurses-dev (= 6.6+20260608-2), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls-dev (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libquadmath0 (= 16.2.0-3), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsmartcols1 (= 2.42.3-1), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.4-1), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262-1), libunbound8 (= 1.26.1-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.3-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.7-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tabix (= 1.24-3), tar (= 1.35+dfsg-6), util-linux (= 2.42.3-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1789984707" +------------------------------------------------------------------------------+ | Package contents Fri, 25 Sep 2026 23:30:15 +0000 | +------------------------------------------------------------------------------+ samtools-dbgsym_1.24-2_arm64.deb -------------------------------- new Debian package, version 2.0. size 1197780 bytes: control archive=856 bytes. 619 bytes, 12 lines control 742 bytes, 7 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.24-2 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2090 Depends: samtools (= 1.24-2) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 05ea898d017cb42491bdffd0b47926fdd1622957 0ef28894e7c0fcddef89c10e123b3f92a71bdc20 1ce4f7fc896a153836b3e6a2379251fdd4e06872 5d2ff0ef05e76846ded05882bb2bbcc10b8a2a1e a2bb73ed11390b0f7f692b61602106b4256bcf1f a4958a7fa7f5387680c1da2fb53658afb115bfb1 be6640f69ea1aaf13ad848f28f3888e64ad58c93 drwxr-xr-x root/root 0 2026-09-21 09:58 ./ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/05/ -rw-r--r-- root/root 21648 2026-09-21 09:58 ./usr/lib/debug/.build-id/05/ea898d017cb42491bdffd0b47926fdd1622957.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/0e/ -rw-r--r-- root/root 25296 2026-09-21 09:58 ./usr/lib/debug/.build-id/0e/f28894e7c0fcddef89c10e123b3f92a71bdc20.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/1c/ -rw-r--r-- root/root 1931624 2026-09-21 09:58 ./usr/lib/debug/.build-id/1c/e4f7fc896a153836b3e6a2379251fdd4e06872.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 52784 2026-09-21 09:58 ./usr/lib/debug/.build-id/5d/2ff0ef05e76846ded05882bb2bbcc10b8a2a1e.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/a2/ -rw-r--r-- root/root 25288 2026-09-21 09:58 ./usr/lib/debug/.build-id/a2/bb73ed11390b0f7f692b61602106b4256bcf1f.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 49704 2026-09-21 09:58 ./usr/lib/debug/.build-id/a4/958a7fa7f5387680c1da2fb53658afb115bfb1.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/be/ -rw-r--r-- root/root 14224 2026-09-21 09:58 ./usr/lib/debug/.build-id/be/6640f69ea1aaf13ad848f28f3888e64ad58c93.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.24-2_arm64.deb ------------------------- new Debian package, version 2.0. size 677996 bytes: control archive=3072 bytes. 1193 bytes, 18 lines control 5815 bytes, 85 lines md5sums Package: samtools Version: 1.24-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1769 Depends: python3, libc6 (>= 2.38), libhts3t64 (>= 1.24), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4), perl:any Suggests: cwltool Section: science Priority: optional Homepage: https://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. Commands: ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, novo2sam.pl, plot-ampliconstats, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, seq_cache_populate.py, soap2sam.pl, wgsim, wgsim_eval.pl, zoom2sam.pl drwxr-xr-x root/root 0 2026-09-21 09:58 ./ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/bin/ -rwxr-xr-x root/root 67712 2026-09-21 09:58 ./usr/bin/ace2sam -rwxr-xr-x root/root 5443 2026-09-21 09:58 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2026-09-21 09:58 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2026-09-21 09:58 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 3300 2026-09-21 09:58 ./usr/bin/fasta-sanitize.pl -rwxr-xr-x root/root 6121 2026-09-21 09:58 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 67712 2026-09-21 09:58 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 67712 2026-09-21 09:58 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 67712 2026-09-21 09:58 ./usr/bin/md5fa -rwxr-xr-x root/root 67712 2026-09-21 09:58 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2026-09-21 09:58 ./usr/bin/novo2sam.pl -rwxr-xr-x root/root 44331 2026-09-21 09:58 ./usr/bin/plot-ampliconstats -rwxr-xr-x root/root 58988 2026-09-21 09:58 ./usr/bin/plot-bamstats -rwxr-xr-x root/root 3204 2026-09-21 09:58 ./usr/bin/psl2sam.pl -rwxr-xr-x root/root 8957 2026-09-21 09:58 ./usr/bin/sam2vcf.pl -rwxr-xr-x root/root 796472 2026-09-21 09:58 ./usr/bin/samtools -rwxr-xr-x root/root 16474 2026-09-21 09:58 ./usr/bin/samtools.pl -rwxr-xr-x root/root 11337 2026-09-21 09:58 ./usr/bin/seq_cache_populate.pl -rwxr-xr-x root/root 12306 2026-07-09 09:41 ./usr/bin/seq_cache_populate.py -rwxr-xr-x root/root 3905 2026-09-21 09:58 ./usr/bin/soap2sam.pl -rwxr-xr-x root/root 67752 2026-09-21 09:58 ./usr/bin/wgsim -rwxr-xr-x root/root 12542 2026-09-21 09:58 ./usr/bin/wgsim_eval.pl -rwxr-xr-x root/root 3579 2026-09-21 09:58 ./usr/bin/zoom2sam.pl drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/commonwl/ -rwxr-xr-x root/root 1906 2026-09-21 09:58 ./usr/share/commonwl/samtools-faidx.cwl -rwxr-xr-x root/root 1979 2026-09-21 09:58 ./usr/share/commonwl/samtools-index.cwl -rwxr-xr-x root/root 1627 2026-09-21 09:58 ./usr/share/commonwl/samtools-rmdup.cwl -rwxr-xr-x root/root 2834 2026-09-21 09:58 ./usr/share/commonwl/samtools-sort.cwl -rwxr-xr-x root/root 6224 2026-09-21 09:58 ./usr/share/commonwl/samtools-view.cwl drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools/ -rw-r--r-- root/root 828 2026-07-09 09:41 ./usr/share/doc/samtools/AUTHORS -rw-r--r-- root/root 497 2026-09-21 09:58 ./usr/share/doc/samtools/README.Debian -rw-r--r-- root/root 2479 2026-07-09 09:41 ./usr/share/doc/samtools/README.gz -rw-r--r-- root/root 313 2026-09-21 09:58 ./usr/share/doc/samtools/README.test -rw-r--r-- root/root 1479 2026-09-21 09:58 ./usr/share/doc/samtools/changelog.Debian.gz -rw-r--r-- root/root 42937 2026-07-09 09:41 ./usr/share/doc/samtools/changelog.gz -rw-r--r-- root/root 3591 2026-09-21 09:58 ./usr/share/doc/samtools/copyright drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools/examples/ -rw-r--r-- root/root 1315 2026-07-09 09:41 ./usr/share/doc/samtools/examples/00README.txt -rw-r--r-- root/root 3225 2026-07-09 09:41 ./usr/share/doc/samtools/examples/ex1.fa -rw-r--r-- root/root 114565 2026-09-21 09:58 ./usr/share/doc/samtools/examples/ex1.sam.gz -rw-r--r-- root/root 98 2026-07-09 09:41 ./usr/share/doc/samtools/examples/toy.fa -rw-r--r-- root/root 786 2026-07-09 09:41 ./usr/share/doc/samtools/examples/toy.sam drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 241 2026-09-21 09:58 ./usr/share/lintian/overrides/samtools drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/man/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/man/man1/ -rw-r--r-- root/root 462 2026-09-21 09:58 ./usr/share/man/man1/ace2sam.1.gz -rw-r--r-- root/root 1637 2026-09-21 09:58 ./usr/share/man/man1/samtools-addreplacerg.1.gz -rw-r--r-- root/root 2486 2026-09-21 09:58 ./usr/share/man/man1/samtools-ampliconclip.1.gz -rw-r--r-- root/root 5835 2026-09-21 09:58 ./usr/share/man/man1/samtools-ampliconstats.1.gz -rw-r--r-- root/root 2394 2026-09-21 09:58 ./usr/share/man/man1/samtools-bedcov.1.gz -rw-r--r-- root/root 2299 2026-09-21 09:58 ./usr/share/man/man1/samtools-calmd.1.gz -rw-r--r-- root/root 2667 2026-09-21 09:58 ./usr/share/man/man1/samtools-cat.1.gz -rw-r--r-- root/root 5919 2026-09-21 09:58 ./usr/share/man/man1/samtools-checksum.1.gz -rw-r--r-- root/root 2473 2026-09-21 09:58 ./usr/share/man/man1/samtools-collate.1.gz -rw-r--r-- root/root 6648 2026-09-21 09:58 ./usr/share/man/man1/samtools-consensus.1.gz -rw-r--r-- root/root 2722 2026-09-21 09:58 ./usr/share/man/man1/samtools-coverage.1.gz -rw-r--r-- root/root 3176 2026-09-21 09:58 ./usr/share/man/man1/samtools-cram-size.1.gz -rw-r--r-- root/root 1752 2026-09-21 09:58 ./usr/share/man/man1/samtools-depad.1.gz -rw-r--r-- root/root 3187 2026-09-21 09:58 ./usr/share/man/man1/samtools-depth.1.gz -rw-r--r-- root/root 1683 2026-09-21 09:58 ./usr/share/man/man1/samtools-dict.1.gz -rw-r--r-- root/root 2350 2026-09-21 09:58 ./usr/share/man/man1/samtools-faidx.1.gz -rw-r--r-- root/root 4725 2026-09-21 09:58 ./usr/share/man/man1/samtools-fasta.1.gz lrwxrwxrwx root/root 0 2026-09-21 09:58 ./usr/share/man/man1/samtools-fastq.1.gz -> samtools-fasta.1.gz -rw-r--r-- root/root 1944 2026-09-21 09:58 ./usr/share/man/man1/samtools-fixmate.1.gz -rw-r--r-- root/root 1495 2026-09-21 09:58 ./usr/share/man/man1/samtools-flags.1.gz -rw-r--r-- root/root 2679 2026-09-21 09:58 ./usr/share/man/man1/samtools-flagstat.1.gz -rw-r--r-- root/root 2393 2026-09-21 09:58 ./usr/share/man/man1/samtools-fqidx.1.gz -rw-r--r-- root/root 1332 2026-09-21 09:58 ./usr/share/man/man1/samtools-head.1.gz -rw-r--r-- root/root 1512 2026-09-21 09:58 ./usr/share/man/man1/samtools-idxstats.1.gz -rw-r--r-- root/root 3658 2026-09-21 09:58 ./usr/share/man/man1/samtools-import.1.gz -rw-r--r-- root/root 1948 2026-09-21 09:58 ./usr/share/man/man1/samtools-index.1.gz -rw-r--r-- root/root 4379 2026-09-21 09:58 ./usr/share/man/man1/samtools-markdup.1.gz -rw-r--r-- root/root 3715 2026-09-21 09:58 ./usr/share/man/man1/samtools-merge.1.gz -rw-r--r-- root/root 8317 2026-09-21 09:58 ./usr/share/man/man1/samtools-mpileup.1.gz -rw-r--r-- root/root 1435 2026-09-21 09:58 ./usr/share/man/man1/samtools-phase.1.gz -rw-r--r-- root/root 1677 2026-09-21 09:58 ./usr/share/man/man1/samtools-quickcheck.1.gz -rw-r--r-- root/root 1877 2026-09-21 09:58 ./usr/share/man/man1/samtools-reference.1.gz -rw-r--r-- root/root 1963 2026-09-21 09:58 ./usr/share/man/man1/samtools-reheader.1.gz -rw-r--r-- root/root 2503 2026-09-21 09:58 ./usr/share/man/man1/samtools-reset.1.gz -rw-r--r-- root/root 1469 2026-09-21 09:58 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 2278 2026-09-21 09:58 ./usr/share/man/man1/samtools-samples.1.gz -rw-r--r-- root/root 4929 2026-09-21 09:58 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 2796 2026-09-21 09:58 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 6955 2026-09-21 09:58 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1426 2026-09-21 09:58 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 2044 2026-09-21 09:58 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 7924 2026-09-21 09:58 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 17386 2026-09-21 09:58 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2026-09-21 09:58 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2026-09-21 09:58 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-vRvitX/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Sources [1451 B] Get:5 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ Packages [1503 B] Fetched 3569 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:arm64 shared-mime-info t1utils ucf unzip 0 upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 25.0 MB of archives. After this operation, 95.0 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-vRvitX/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [832 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260816 [134 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.0-1 [1618 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libcurl4-gnutls amd64 8.23.0~rc1-2 [460 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.1.1-1 [138 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.29-1 [63.8 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.2.0-2 [261 kB] Get:40 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.2.0-2 [624 kB] Get:41 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.69-1 [34.9 kB] Get:42 http://localhost:3142/debian unstable/main amd64 distro-info-data all 2026.08.20-1 [6292 B] Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b2 [60.7 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.12.3-2 [934 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.9-7+b1 [130 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.8.1-1 [147 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-4 [23.1 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.9-7+b1 [665 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43+b1 [68.3 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b5 [10.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-3+b1 [15.7 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b7 [22.7 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.65-1 [45.4 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2+b2 [122 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.37-1 [113 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-2+b2 [99.6 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.72-1 [217 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b7 [36.7 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.50-1+b2 [21.6 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-someutil-perl amd64 1.11-1 [24.5 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b2 [24.7 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1.1 [49.5 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:83 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.51-1 [144 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3+b1 [32.1 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b6 [98.3 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.87-1+b1 [24.1 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libdistro-info-perl all 1.17 [5192 B] Get:99 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b5 [29.5 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:104 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:105 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b3 [31.3 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:114 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:121 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:122 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.96-2 [335 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:125 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.83-1 [186 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:135 http://localhost:3142/debian unstable/main amd64 liblist-someutils-xs-perl amd64 0.59-1+b1 [35.6 kB] Get:136 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:137 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16-2 [40.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b2 [36.5 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:141 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:146 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.2-1+b1 [144 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4+b1 [11.3 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b3 [12.6 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b5 [17.6 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b4 [11.4 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b4 [41.9 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.006+ds-1+b1 [101 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.006+ds-1+b1 [104 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:159 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1+b1 [66.2 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1+b1 [27.2 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b5 [24.7 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b5 [8780 B] Get:163 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1+b1 [13.2 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b3 [175 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1+b1 [78.4 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.75-1+b1 [28.8 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b1 [314 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:174 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.910.0+ds-1+b1 [48.2 kB] Get:175 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13-2 [72.8 kB] Get:176 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:177 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.5-1 [85.7 kB] Get:178 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:179 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-31 [176 kB] Get:180 http://localhost:3142/debian unstable/main amd64 lintian all 2.141.0 [1038 kB] Preconfiguring packages ... Fetched 25.0 MB in 0s (110 MB/s) Selecting previously unselected package netbase. (Reading database ... 22086 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.4-1_amd64.deb ... Unpacking openssl (3.6.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20260816_all.deb ... Unpacking ca-certificates (20260816) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../010-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libglib2.0-0t64:amd64. 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Preparing to unpack .../017-libp11-kit0_0.26.5-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.5-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../018-libtasn1-6_4.21.0-2+b1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../019-libgnutls30t64_3.8.13-1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.13-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../020-libkrb5support0_1.22.1-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../021-libcom-err2_1.47.4-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../022-libk5crypto3_1.22.1-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-3) ... 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Selecting previously unselected package libfyaml0:amd64. Preparing to unpack .../034-libfyaml0_0.9.4-1_amd64.deb ... Unpacking libfyaml0:amd64 (0.9.4-1) ... Selecting previously unselected package libstemmer0d:amd64. Preparing to unpack .../035-libstemmer0d_3.1.1-1_amd64.deb ... Unpacking libstemmer0d:amd64 (3.1.1-1) ... Selecting previously unselected package libxmlb2:amd64. Preparing to unpack .../036-libxmlb2_0.3.29-1_amd64.deb ... Unpacking libxmlb2:amd64 (0.3.29-1) ... Selecting previously unselected package libappstream5:amd64. Preparing to unpack .../037-libappstream5_1.2.0-2_amd64.deb ... Unpacking libappstream5:amd64 (1.2.0-2) ... Selecting previously unselected package appstream. Preparing to unpack .../038-appstream_1.2.0-2_amd64.deb ... Unpacking appstream (1.2.0-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../039-diffstat_1.69-1_amd64.deb ... Unpacking diffstat (1.69-1) ... Selecting previously unselected package distro-info-data. Preparing to unpack .../040-distro-info-data_2026.08.20-1_all.deb ... Unpacking distro-info-data (2026.08.20-1) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../041-libgpg-error0_1.61-5_amd64.deb ... Unpacking libgpg-error0:amd64 (1.61-5) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../042-libassuan9_3.0.2-2+b2_amd64.deb ... Unpacking libassuan9:amd64 (3.0.2-2+b2) ... Selecting previously unselected package libgcrypt20:amd64. Preparing to unpack .../043-libgcrypt20_1.12.3-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.12.3-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../044-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.9-7+b1_amd64.deb ... Unpacking gpgconf (2.4.9-7+b1) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../046-libksba8_1.8.1-1_amd64.deb ... Unpacking libksba8:amd64 (1.8.1-1) ... Selecting previously unselected package libnpth0t64:amd64. 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Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libnpth0t64:amd64 (1.8-4) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b1) ... Setting up libmouse-perl:amd64 (2.6.2-1+b1) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up libdata-messagepack-perl (1.02-3+b1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.50-1+b2) ... 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Setting up libdistro-info-perl (1.17) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-3+b1) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.90.0-1) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1+b1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhtml-parser-perl:amd64 (3.83-2+b2) ... Setting up gpgconf (2.4.9-7+b1) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up gpg (2.4.9-7+b1) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.29-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b7) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0~rc1-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.2.0-2) ... Setting up liblist-someutils-xs-perl:amd64 (0.59-1+b1) ... Setting up appstream (1.2.0-2) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.141.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Fri, 25 Sep 2026 23:30:31 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 25 Sep 2026 23:30:31 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 25 Sep 2026 23:30:32 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 54 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 15 Job: samtools_1.24-2 Lintian: pass Machine Architecture: amd64 Package: samtools Package-Time: 81 Source-Version: 1.24-2 Space: n/a Status: successful Version: 1.24-2 -------------------------------------------------------------------------------- Finished at 2026-09-25T23:30:15Z Build needed 00:01:21, no disk space