sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | samtools 1.24-2 (s390x) Thu, 08 Oct 2026 14:09:53 +0000 | +==============================================================================+ Package: samtools Version: 1.24-2 Source Version: 1.24-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.opUYJH_i7z... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 08 Oct 2026 14:09:57 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.0 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main s390x Packages [10.2 MB] Fetched 33.2 MB in 3s (12.9 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Thu, 08 Oct 2026 14:10:02 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5801 kB of source archives. Get:1 http://localhost:3142/debian unstable/main samtools 1.24-2 (dsc) [2267 B] Get:2 http://localhost:3142/debian unstable/main samtools 1.24-2 (tar) [5776 kB] Get:3 http://localhost:3142/debian unstable/main samtools 1.24-2 (diff) [22.7 kB] Fetched 5801 kB in 0s (174 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 08 Oct 2026 14:10:03 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), bash-completion, libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 14), bash-completion, libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-wxkr1B/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Sources [869 B] Get:5 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Packages [885 B] Fetched 2363 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcurl4-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libdeflate-dev:s390x libdeflate0:s390x libelf1t64 libevent-2.1-7t64:s390x libffi8:s390x libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhts-dev:s390x libhts3t64:s390x libhtscodecs2:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblsan0:s390x liblsan0-s390x-cross liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libncurses-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf7 libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring-dev:s390x libunistring5 libunistring5:s390x libxml2-16 libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sensible-utils tabix:s390x zlib1g:s390x zlib1g-dev:s390x Suggested packages: gnu-standards autoconf-doc binutils-doc doc-base:s390x gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x manpages-dev:s390x libcurl4-doc:s390x libidn-dev:s390x gmp-doc:s390x libgmp10-doc:s390x libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x krb5-user:s390x liblzma-doc:s390x ncurses-doc:s390x libnghttp2-doc:s390x p11-kit-doc:s390x libssl-doc:s390x libstdc++-16-doc:s390x libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests bzip2-doc:s390x ca-certificates:s390x libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x libgpm2:s390x publicsuffix:s390x libsasl2-modules:s390x libtasn1-doc:s390x libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcurl4-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libdeflate-dev:s390x libdeflate0:s390x libelf1t64 libevent-2.1-7t64:s390x libffi8:s390x libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhts-dev:s390x libhts3t64:s390x libhtscodecs2:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblsan0:s390x liblsan0-s390x-cross liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libncurses-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf7 libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring-dev:s390x libunistring5 libunistring5:s390x libxml2-16 libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils tabix:s390x zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 118 MB of archives. After this operation, 468 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://localhost:3142/debian unstable/main amd64 autoconf-archive all 20241016-3 [797 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 bash-completion all 1:2.16.0-8 [319 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:7 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:10 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:11 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:13 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:14 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:19 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.47-6 [1435 kB] Get:20 http://localhost:3142/debian unstable/main s390x gcc-16-base s390x 16.2.0-3 [38.7 kB] Get:21 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 16.2.0-3 [52.2 kB] Get:22 http://localhost:3142/debian unstable/main s390x libc-gconv-modules-extra s390x 2.43-7 [1077 kB] Get:23 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.43-7 [1475 kB] Get:24 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.43-7 [1621 kB] Get:25 http://localhost:3142/debian unstable/main s390x libcom-err2 s390x 1.47.4-1+b2 [19.3 kB] Get:26 http://localhost:3142/debian unstable/main s390x comerr-dev s390x 2.1-1.47.4-1+b2 [51.1 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-16-s390x-linux-gnu amd64 16.2.0-3cross1 [11.1 MB] Get:29 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:16.1.0-3 [4468 B] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.43-3cross8 [1222 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 16.2.0-3cross1 [52.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 16.2.0-3cross1 [140 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 16.2.0-3cross1 [26.9 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 16.2.0-3cross1 [9056 B] Get:36 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 16.2.0-3cross1 [2657 kB] Get:37 http://localhost:3142/debian unstable/main amd64 liblsan0-s390x-cross all 16.2.0-3cross1 [1233 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libtsan2-s390x-cross all 16.2.0-3cross1 [2396 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 16.2.0-3cross1 [810 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 16.2.0-3cross1 [1097 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-s390x-cross all 16.2.0-3cross1 [1181 kB] Get:42 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu amd64 16.2.0-3cross1 [21.1 MB] Get:43 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:16.1.0-3 [1440 B] Get:44 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 7.2.9-1 [12.3 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.43-3cross8 [1614 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-s390x-cross all 16.2.0-3cross1 [2711 kB] Get:47 http://localhost:3142/debian unstable/main amd64 g++-16-s390x-linux-gnu amd64 16.2.0-3cross1 [12.3 MB] Get:48 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:16.1.0-3 [1200 B] Get:49 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:50 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:52 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:56 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:60 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:61 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:62 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:63 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:64 http://localhost:3142/debian unstable/main s390x libkrb5support0 s390x 1.22.1-3 [30.8 kB] Get:65 http://localhost:3142/debian unstable/main s390x libk5crypto3 s390x 1.22.1-3 [80.9 kB] Get:66 http://localhost:3142/debian unstable/main s390x libkeyutils1 s390x 1.6.3-6+b2 [9280 B] Get:67 http://localhost:3142/debian unstable/main s390x libzstd1 s390x 1.5.7+dfsg-4 [322 kB] Get:68 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.2-3 [88.0 kB] Get:69 http://localhost:3142/debian unstable/main s390x libssl3t64 s390x 3.6.5-1 [2073 kB] Get:70 http://localhost:3142/debian unstable/main s390x libkrb5-3 s390x 1.22.1-3 [330 kB] Get:71 http://localhost:3142/debian unstable/main s390x libgssapi-krb5-2 s390x 1.22.1-3 [130 kB] Get:72 http://localhost:3142/debian unstable/main s390x libgssrpc4t64 s390x 1.22.1-3 [56.3 kB] Get:73 http://localhost:3142/debian unstable/main s390x libkadm5clnt-mit12 s390x 1.22.1-3 [39.0 kB] Get:74 http://localhost:3142/debian unstable/main s390x libkdb5-10t64 s390x 1.22.1-3 [40.7 kB] Get:75 http://localhost:3142/debian unstable/main s390x libkadm5srv-mit12 s390x 1.22.1-3 [52.5 kB] Get:76 http://localhost:3142/debian unstable/main s390x krb5-multidev s390x 1.22.1-3 [125 kB] Get:77 http://localhost:3142/debian unstable/main s390x libasan8 s390x 16.2.0-3 [2664 kB] Get:78 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 16.2.0-3 [8968 B] Get:79 http://localhost:3142/debian unstable/main s390x libbrotli1 s390x 1.2.0-4+b1 [323 kB] Get:80 http://localhost:3142/debian unstable/main s390x libbrotli-dev s390x 1.2.0-4+b1 [339 kB] Get:81 http://localhost:3142/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-6+b2 [41.9 kB] Get:82 http://localhost:3142/debian unstable/main s390x libbz2-dev s390x 1.0.8-6+b2 [35.7 kB] Get:83 http://localhost:3142/debian unstable/main s390x libnghttp3-9 s390x 1.17.0-1 [65.1 kB] Get:84 http://localhost:3142/debian unstable/main s390x libngtcp2-16 s390x 1.24.0-1 [135 kB] Get:85 http://localhost:3142/debian unstable/main s390x libgmp10 s390x 2:6.3.0+dfsg-5+b2 [604 kB] Get:86 http://localhost:3142/debian unstable/main s390x libnettle8t64 s390x 3.10.2-1+b1 [318 kB] Get:87 http://localhost:3142/debian unstable/main s390x libhogweed6t64 s390x 3.10.2-1+b1 [336 kB] Get:88 http://localhost:3142/debian unstable/main s390x libunistring5 s390x 1.4.2-1 [475 kB] Get:89 http://localhost:3142/debian unstable/main s390x libidn2-0 s390x 2.3.8-5 [107 kB] Get:90 http://localhost:3142/debian unstable/main s390x libffi8 s390x 3.8.0-2 [26.0 kB] Get:91 http://localhost:3142/debian unstable/main s390x libp11-kit0 s390x 0.26.5-1 [459 kB] Get:92 http://localhost:3142/debian unstable/main s390x libtasn1-6 s390x 4.21.0-2+b1 [47.8 kB] Get:93 http://localhost:3142/debian unstable/main s390x libgnutls30t64 s390x 3.8.13-1 [1451 kB] Get:94 http://localhost:3142/debian unstable/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-11+b1 [670 kB] Get:95 http://localhost:3142/debian unstable/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-11 [16.7 kB] Get:96 http://localhost:3142/debian unstable/main s390x libsasl2-2 s390x 2.1.28+dfsg1-11 [54.1 kB] Get:97 http://localhost:3142/debian unstable/main s390x libldap2 s390x 2.6.14+dfsg-2 [181 kB] Get:98 http://localhost:3142/debian unstable/main s390x libnghttp2-14 s390x 1.70.0-1 [90.6 kB] Get:99 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls8 s390x 1.24.0-1 [22.2 kB] Get:100 http://localhost:3142/debian unstable/main s390x libpsl5t64 s390x 0.23.3-1 [61.3 kB] Get:101 http://localhost:3142/debian unstable/main s390x libssh2-1t64 s390x 1.11.1-6 [237 kB] Get:102 http://localhost:3142/debian unstable/main s390x libcurl4-gnutls s390x 8.23.0~rc2-1 [406 kB] Get:103 http://localhost:3142/debian unstable/main s390x libevent-2.1-7t64 s390x 2.1.13-stable-1 [176 kB] Get:104 http://localhost:3142/debian unstable/main s390x libunbound8 s390x 1.26.1-1 [606 kB] Get:105 http://localhost:3142/debian unstable/main s390x libgnutls-dane0t64 s390x 3.8.13-1 [496 kB] Get:106 http://localhost:3142/debian unstable/main s390x libidn2-dev s390x 2.3.8-5 [101 kB] Get:107 http://localhost:3142/debian unstable/main s390x libp11-kit-dev s390x 0.26.5-1 [226 kB] Get:108 http://localhost:3142/debian unstable/main s390x libtasn1-6-dev s390x 4.21.0-2+b1 [97.7 kB] Get:109 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 16.2.0-3 [833 kB] Get:110 http://localhost:3142/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.3.0+dfsg-5+b2 [328 kB] Get:111 http://localhost:3142/debian unstable/main s390x libgmp-dev s390x 2:6.3.0+dfsg-5+b2 [685 kB] Get:112 http://localhost:3142/debian unstable/main s390x nettle-dev s390x 3.10.2-1+b1 [1332 kB] Get:113 http://localhost:3142/debian unstable/main s390x libgnutls28-dev s390x 3.8.13-1 [1383 kB] Get:114 http://localhost:3142/debian unstable/main s390x libkrb5-dev s390x 1.22.1-3 [14.0 kB] Get:115 http://localhost:3142/debian unstable/main s390x libldap-dev s390x 2.6.14+dfsg-2 [299 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:117 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:118 http://localhost:3142/debian unstable/main s390x pkgconf s390x 2.5.1-4 [33.6 kB] Get:119 http://localhost:3142/debian unstable/main s390x libnghttp2-dev s390x 1.70.0-1 [130 kB] Get:120 http://localhost:3142/debian unstable/main s390x libnghttp3-dev s390x 1.17.0-1 [92.9 kB] Get:121 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls-dev s390x 1.24.0-1 [22.2 kB] Get:122 http://localhost:3142/debian unstable/main s390x libngtcp2-dev s390x 1.24.0-1 [195 kB] Get:123 http://localhost:3142/debian unstable/main s390x libunistring-dev s390x 1.4.2-1 [633 kB] Get:124 http://localhost:3142/debian unstable/main s390x libpsl-dev s390x 0.23.3-1 [30.1 kB] Get:125 http://localhost:3142/debian unstable/main s390x librtmp1 s390x 2.6-1 [56.4 kB] Get:126 http://localhost:3142/debian unstable/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.2-3 [916 kB] Get:127 http://localhost:3142/debian unstable/main s390x librtmp-dev s390x 2.6-1 [66.9 kB] Get:128 http://localhost:3142/debian unstable/main s390x libssl-dev s390x 3.6.5-1 [2631 kB] Get:129 http://localhost:3142/debian unstable/main s390x libssh2-1-dev s390x 1.11.1-6 [387 kB] Get:130 http://localhost:3142/debian unstable/main s390x libzstd-dev s390x 1.5.7+dfsg-4 [388 kB] Get:131 http://localhost:3142/debian unstable/main s390x libcurl4-gnutls-dev s390x 8.23.0~rc2-1 [545 kB] Get:132 http://localhost:3142/debian unstable/main s390x libdeflate0 s390x 1.25-1 [40.7 kB] Get:133 http://localhost:3142/debian unstable/main s390x libdeflate-dev s390x 1.25-1 [48.4 kB] Get:134 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 16.2.0-3 [140 kB] Get:135 http://localhost:3142/debian unstable/main s390x libitm1 s390x 16.2.0-3 [26.9 kB] Get:136 http://localhost:3142/debian unstable/main s390x liblsan0 s390x 16.2.0-3 [1233 kB] Get:137 http://localhost:3142/debian unstable/main s390x libtsan2 s390x 16.2.0-3 [2409 kB] Get:138 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 16.2.0-3 [1098 kB] Get:139 http://localhost:3142/debian unstable/main s390x libgcc-16-dev s390x 16.2.0-3 [1189 kB] Get:140 http://localhost:3142/debian unstable/main s390x libhtscodecs2 s390x 1.6.7-1 [83.2 kB] Get:141 http://localhost:3142/debian unstable/main s390x liblzma5 s390x 5.8.4-1 [350 kB] Get:142 http://localhost:3142/debian unstable/main s390x libhts3t64 s390x 1.24-3 [479 kB] Get:143 http://localhost:3142/debian unstable/main s390x liblzma-dev s390x 5.8.4-1 [386 kB] Get:144 http://localhost:3142/debian unstable/main s390x libhts-dev s390x 1.24-3 [1798 kB] Get:145 http://localhost:3142/debian unstable/main s390x libtinfo6 s390x 6.6+20260608-2 [353 kB] Get:146 http://localhost:3142/debian unstable/main s390x libncurses6 s390x 6.6+20260608-2 [107 kB] Get:147 http://localhost:3142/debian unstable/main s390x libncursesw6 s390x 6.6+20260608-2 [136 kB] Get:148 http://localhost:3142/debian unstable/main s390x libncurses-dev s390x 6.6+20260608-2 [358 kB] Get:149 http://localhost:3142/debian unstable/main s390x libstdc++-16-dev s390x 16.2.0-3 [2737 kB] Get:150 http://localhost:3142/debian unstable/main s390x tabix s390x 1.24-3 [495 kB] Preconfiguring packages ... Fetched 118 MB in 1s (111 MB/s) Selecting previously unselected package autoconf-archive. (Reading database ... 12033 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20241016-3_all.deb ... Unpacking autoconf-archive (20241016-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package bash-completion. Preparing to unpack .../002-bash-completion_1%3a2.16.0-8_all.deb ... Unpacking bash-completion (1:2.16.0-8) ... Replaced by files in installed package dpkg (1.23.11) ... Replaced by files in installed package dpkg-dev (1.23.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. 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Selecting previously unselected package libgnutls28-dev:s390x. Preparing to unpack .../111-libgnutls28-dev_3.8.13-1_s390x.deb ... Unpacking libgnutls28-dev:s390x (3.8.13-1) ... Selecting previously unselected package libkrb5-dev:s390x. Preparing to unpack .../112-libkrb5-dev_1.22.1-3_s390x.deb ... Unpacking libkrb5-dev:s390x (1.22.1-3) ... Selecting previously unselected package libldap-dev:s390x. Preparing to unpack .../113-libldap-dev_2.6.14+dfsg-2_s390x.deb ... Unpacking libldap-dev:s390x (2.6.14+dfsg-2) ... Selecting previously unselected package libpkgconf7:amd64. Preparing to unpack .../114-libpkgconf7_2.5.1-4_amd64.deb ... Unpacking libpkgconf7:amd64 (2.5.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../115-pkgconf-bin_2.5.1-4_amd64.deb ... Unpacking pkgconf-bin (2.5.1-4) ... Selecting previously unselected package pkgconf:s390x. Preparing to unpack .../116-pkgconf_2.5.1-4_s390x.deb ... Unpacking pkgconf:s390x (2.5.1-4) ... Selecting previously unselected package libnghttp2-dev:s390x. Preparing to unpack .../117-libnghttp2-dev_1.70.0-1_s390x.deb ... Unpacking libnghttp2-dev:s390x (1.70.0-1) ... Selecting previously unselected package libnghttp3-dev:s390x. Preparing to unpack .../118-libnghttp3-dev_1.17.0-1_s390x.deb ... Unpacking libnghttp3-dev:s390x (1.17.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:s390x. Preparing to unpack .../119-libngtcp2-crypto-gnutls-dev_1.24.0-1_s390x.deb ... Unpacking libngtcp2-crypto-gnutls-dev:s390x (1.24.0-1) ... Selecting previously unselected package libngtcp2-dev:s390x. Preparing to unpack .../120-libngtcp2-dev_1.24.0-1_s390x.deb ... Unpacking libngtcp2-dev:s390x (1.24.0-1) ... Selecting previously unselected package libunistring-dev:s390x. Preparing to unpack .../121-libunistring-dev_1.4.2-1_s390x.deb ... Unpacking libunistring-dev:s390x (1.4.2-1) ... Selecting previously unselected package libpsl-dev:s390x. 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Unpacking libncursesw6:s390x (6.6+20260608-2) ... Selecting previously unselected package libncurses-dev:s390x. Preparing to unpack .../146-libncurses-dev_6.6+20260608-2_s390x.deb ... Unpacking libncurses-dev:s390x (6.6+20260608-2) ... Selecting previously unselected package libstdc++-16-dev:s390x. Preparing to unpack .../147-libstdc++-16-dev_16.2.0-3_s390x.deb ... Unpacking libstdc++-16-dev:s390x (16.2.0-3) ... Selecting previously unselected package tabix:s390x. Preparing to unpack .../148-tabix_1.24-3_s390x.deb ... Unpacking tabix:s390x (1.24-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../149-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libc-gconv-modules-extra:s390x (2.43-7) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up binutils-s390x-linux-gnu (2.47-6) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libdebhelper-perl (14.5) ... Setting up libc6-s390x-cross (2.43-3cross8) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up gcc-16-s390x-linux-gnu-base:amd64 (16.2.0-3cross1) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up autoconf-archive (20241016-3) ... Setting up gcc-16-base:s390x (16.2.0-3) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (7.2.9-1) ... Setting up bash-completion (1:2.16.0-8) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up libgcc-s1-s390x-cross (16.2.0-3cross1) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up libitm1-s390x-cross (16.2.0-3cross1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libc6-dev-s390x-cross (2.43-3cross8) ... Setting up liblsan0-s390x-cross (16.2.0-3cross1) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libgomp1-s390x-cross (16.2.0-3cross1) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libstdc++6-s390x-cross (16.2.0-3cross1) ... Setting up cpp-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up libatomic1-s390x-cross (16.2.0-3cross1) ... Setting up libasan8-s390x-cross (16.2.0-3cross1) ... Setting up pkgconf:s390x (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libtsan2-s390x-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up libubsan1-s390x-cross (16.2.0-3cross1) ... Setting up cpp-s390x-linux-gnu (4:16.1.0-3) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up gcc-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up gcc-s390x-linux-gnu (4:16.1.0-3) ... Setting up libstdc++-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up g++-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up g++-s390x-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-s390x (12.12) ... Setting up libgcc-s1:s390x (16.2.0-3) ... Setting up libc6:s390x (2.43-7) ... Setting up libnghttp3-9:s390x (1.17.0-1) ... Setting up libnghttp3-dev:s390x (1.17.0-1) ... Setting up libdb5.3t64:s390x (5.3.28+dfsg2-11+b1) ... Setting up libffi8:s390x (3.8.0-2) ... Setting up libasan8:s390x (16.2.0-3) ... Setting up libtasn1-6:s390x (4.21.0-2+b1) ... Setting up libc6-dev:s390x (2.43-7) ... Setting up libngtcp2-16:s390x (1.24.0-1) ... Setting up libtsan2:s390x (16.2.0-3) ... Setting up libbz2-1.0:s390x (1.0.8-6+b2) ... Setting up libtasn1-6-dev:s390x (4.21.0-2+b1) ... Setting up libstdc++6:s390x (16.2.0-3) ... Setting up liblsan0:s390x (16.2.0-3) ... Setting up libitm1:s390x (16.2.0-3) ... Setting up libtinfo6:s390x (6.6+20260608-2) ... Setting up libbz2-dev:s390x (1.0.8-6+b2) ... Setting up libhtscodecs2:s390x (1.6.7-1) ... Setting up libzstd1:s390x (1.5.7+dfsg-4) ... Setting up libkeyutils1:s390x (1.6.3-6+b2) ... Setting up libzstd-dev:s390x (1.5.7+dfsg-4) ... Setting up liblzma5:s390x (5.8.4-1) ... Setting up libbrotli1:s390x (1.2.0-4+b1) ... Setting up libnghttp2-14:s390x (1.70.0-1) ... Setting up libdeflate0:s390x (1.25-1) ... Setting up libevent-2.1-7t64:s390x (2.1.13-stable-1) ... Setting up zlib1g:s390x (1:1.3.dfsg+really1.3.2-3) ... Setting up libcom-err2:s390x (1.47.4-1+b2) ... Setting up libngtcp2-dev:s390x (1.24.0-1) ... Setting up libgomp1:s390x (16.2.0-3) ... Setting up libkrb5support0:s390x (1.22.1-3) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-11) ... Setting up libnettle8t64:s390x (3.10.2-1+b1) ... Setting up libgmp10:s390x (2:6.3.0+dfsg-5+b2) ... Setting up libncurses6:s390x (6.6+20260608-2) ... Setting up libp11-kit0:s390x (0.26.5-1) ... Setting up comerr-dev:s390x (2.1-1.47.4-1+b2) ... Setting up libunistring5:s390x (1.4.2-1) ... Setting up libatomic1:s390x (16.2.0-3) ... Setting up libncursesw6:s390x (6.6+20260608-2) ... Setting up libk5crypto3:s390x (1.22.1-3) ... Setting up liblzma-dev:s390x (5.8.4-1) ... Setting up libubsan1:s390x (16.2.0-3) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:s390x (3.10.2-1+b1) ... Setting up libdeflate-dev:s390x (1.25-1) ... Setting up tabix:s390x (1.24-3) ... Setting up libbrotli-dev:s390x (1.2.0-4+b1) ... Setting up libp11-kit-dev:s390x (0.26.5-1) ... Setting up libunistring-dev:s390x (1.4.2-1) ... Setting up libnghttp2-dev:s390x (1.70.0-1) ... Setting up libncurses-dev:s390x (6.6+20260608-2) ... Setting up libgcc-16-dev:s390x (16.2.0-3) ... Setting up libssl3t64:s390x (3.6.5-1) ... Setting up libidn2-0:s390x (2.3.8-5) ... Setting up libunbound8:s390x (1.26.1-1) ... Setting up libgmpxx4ldbl:s390x (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:s390x (16.2.0-3) ... Setting up libssl-dev:s390x (3.6.5-1) ... Setting up libidn2-dev:s390x (2.3.8-5) ... Setting up libsasl2-2:s390x (2.1.28+dfsg1-11) ... Setting up libkrb5-3:s390x (1.22.1-3) ... Setting up libssh2-1t64:s390x (1.11.1-6) ... Setting up libldap2:s390x (2.6.14+dfsg-2) ... Setting up libgnutls30t64:s390x (3.8.13-1) ... Setting up libgmp-dev:s390x (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:s390x (3.10.2-1+b1) ... Setting up libpsl5t64:s390x (0.23.3-1) ... Setting up libpsl-dev:s390x (0.23.3-1) ... Setting up libgnutls-dane0t64:s390x (3.8.13-1) ... Setting up librtmp1:s390x (2.6-1) ... Setting up libldap-dev:s390x (2.6.14+dfsg-2) ... Setting up libgssapi-krb5-2:s390x (1.22.1-3) ... Setting up libssh2-1-dev:s390x (1.11.1-6) ... Setting up libngtcp2-crypto-gnutls8:s390x (1.24.0-1) ... Setting up libgnutls28-dev:s390x (3.8.13-1) ... Setting up libcurl4-gnutls:s390x (8.23.0~rc2-1) ... Setting up libngtcp2-crypto-gnutls-dev:s390x (1.24.0-1) ... Setting up libgssrpc4t64:s390x (1.22.1-3) ... Setting up librtmp-dev:s390x (2.6-1) ... Setting up libhts3t64:s390x (1.24-3) ... Setting up libkadm5clnt-mit12:s390x (1.22.1-3) ... Setting up libkdb5-10t64:s390x (1.22.1-3) ... Setting up libkadm5srv-mit12:s390x (1.22.1-3) ... Setting up krb5-multidev:s390x (1.22.1-3) ... Setting up libkrb5-dev:s390x (1.22.1-3) ... Setting up libcurl4-gnutls-dev:s390x (8.23.0~rc2-1) ... Setting up libhts-dev:s390x (1.24-3) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 08 Oct 2026 14:10:18 +0000 | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment Thu, 08 Oct 2026 14:10:18 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-s390x-cross_16.2.0-3cross1 linux-libc-dev_7.2.9-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 autoconf-archive_20241016-3 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 bash-completion_1:2.16.0-8 binutils_2.47-6 binutils-common_2.47-6 binutils-s390x-linux-gnu_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-s390x-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-s390x-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-s390x-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-3 g++-s390x-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-cross-base_16.2.0-3cross1 gcc-16-s390x-linux-gnu_16.2.0-3cross1 gcc-16-s390x-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-s390x-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libasan8-s390x-cross_16.2.0-3cross1 libatomic1_16.2.0-3 libatomic1-s390x-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblkid1_2.42.4-1 libbrotli-dev_1.2.0-4+b1 libbrotli1_1.2.0-4+b1 libbz2-1.0_1.0.8-6+b2 libbz2-dev_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libc6-dev-s390x-cross_2.43-3cross8 libc6-s390x-cross_2.43-3cross8 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcom-err2_1.47.4-1+b2 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libcurl4-gnutls_8.23.0~rc2-1 libcurl4-gnutls-dev_8.23.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libevent-2.1-7t64_2.1.13-stable-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 libgcc-16-dev-s390x-cross_16.2.0-3cross1 libgcc-s1_16.2.0-3 libgcc-s1-s390x-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls-dane0t64_3.8.13-1 libgnutls28-dev_3.8.13-1 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-3 libgomp1-s390x-cross_16.2.0-3cross1 libgprofng0_2.47-6 libgssapi-krb5-2_1.22.1-3 libgssrpc4t64_1.22.1-3 libhogweed6t64_3.10.2-1+b1 libhts-dev_1.24-3 libhts3t64_1.24-3 libhtscodecs2_1.6.7-1 libhwasan0_16.2.0-3 libidn2-0_2.3.8-5 libidn2-dev_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-3 libitm1-s390x-cross_16.2.0-3cross1 libjansson4_2.15.1-1 libk5crypto3_1.22.1-3 libkadm5clnt-mit12_1.22.1-3 libkadm5srv-mit12_1.22.1-3 libkdb5-10t64_1.22.1-3 libkeyutils1_1.6.3-6+b2 libkrb5-3_1.22.1-3 libkrb5-dev_1.22.1-3 libkrb5support0_1.22.1-3 libldap-dev_2.6.14+dfsg-2 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-3 liblsan0-s390x-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma-dev_5.8.4-1 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncurses-dev_6.6+20260608-2 libncurses6_6.6+20260608-2 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.70.0-1 libnghttp2-dev_1.70.0-1 libnghttp3-9_1.17.0-1 libnghttp3-dev_1.17.0-1 libngtcp2-16_1.24.0-1 libngtcp2-crypto-gnutls-dev_1.24.0-1 libngtcp2-crypto-gnutls8_1.24.0-1 libngtcp2-dev_1.24.0-1 libp11-kit-dev_0.26.5-1 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libpsl-dev_0.23.3-1 libpsl5t64_0.23.3-1 libquadmath0_16.2.0-3 librtmp-dev_2.6-1 librtmp1_2.6-1 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47-6 libsmartcols1_2.42.4-1 libssh2-1-dev_1.11.1-6 libssh2-1t64_1.11.1-6 libssl-dev_3.6.5-1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-s390x-cross_16.2.0-3cross1 libsystemd0_262-1 libtasn1-6_4.21.0-2+b1 libtasn1-6-dev_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-3 libtsan2-s390x-cross_16.2.0-3cross1 libubsan1_16.2.0-3 libubsan1-s390x-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262-1 libunbound8_1.26.1-1 libunistring-dev_1.4.2-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd-dev_1.5.7+dfsg-4 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.9-1 linux-libc-dev-s390x-cross_7.2.9-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.5-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tabix_1.24-3 tar_1.35+dfsg-6 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 08 Oct 2026 14:10:18 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.24-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 14), bash-completion, libio-pty-perl , libncurses-dev, libhts-dev (>= 1.24~), zlib1g-dev, autoconf-archive, pkgconf, tabix, liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 25ed9a511412660b4a3921b23f1f716fa71b7b2a 5776293 samtools_1.24.orig.tar.gz 31c88260b87917b1ee5ab12572ee3dbb0904f4e3 22712 samtools_1.24-2.debian.tar.xz Checksums-Sha256: 8a3dab0eddb4dc4bf795ad84c12e5bd82f31d831b24ce54c1a576c3151343805 5776293 samtools_1.24.orig.tar.gz 69c24f12c3af0a8cb0bf0d5d644735800870349d4df28f0667f8ef8584d664eb 22712 samtools_1.24-2.debian.tar.xz Files: f9f160a7a343441b19dcf859d3cba656 5776293 samtools_1.24.orig.tar.gz 0dbdf0731eefeb5fd96d437269d3e061 22712 samtools_1.24-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmqxAskRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGucQ/+OdaU6aE5DEtmE2V2e0bLD+Ww3Pfufmkm 2Jm9aTIiC8MFehebVT72TI8RVimKLW+jb7UFonMhz4X1DVdmxfSfpHkohV9tHghT VwEf2IPQXfJQpfmMLfvScWRMj1uiwfVTG3iozghGQV2IGauC5CgaaGLXlk9O5Hfe 5MclJDErNPVOVA3bRWw1XuNbj40YfZrnldrQE6fnBSr/Pwcfi/tzhjYtIK0TXGZH mByxkM45W//NCvvKHO2z0TZbBjZkyQExEX4X2YStSytLam9shHE9lUav0WMFQ/Ew W75Ol6pkJIselsIvH2zLfZCneSmLPj0ypPkwpLDeVfZ//eJlR1yaxqQg5jG5qRNU hlEdmFPggnKgCMlEVhJTD/IlJrPM4wU62j83XQwK/FfWEZyvzxzqms6yFJFNbtYr dE14V5QTzoy/mFLAwIDIS0bUJUVxuV86R+78h1T4zD0XBPEFRGXjEtLARm3nj2iW 9OoaFQz2H9+nTXJ/6gNKYvcOZPXNiGxJtWk/SvQCcmP19DnX6IULeVg+MAKyqxG8 WrM0f1WPC0iw8cNXY1S99X0bvuuYjAdu9DFYZ1p2dFxR3Hagst6O1QSeZF1CvGTv bEN0hts13oK9KKVlTP7WY9MNhCtAQKYC8yHy9UbUsekhgS94e4nbvl6mpULArSUI wnl+C7XDYWE= =rZ5G -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./samtools_1.24-2.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./samtools_1.24-2.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting samtools in /build/reproducible-path/samtools-1.24 dpkg-source: info: unpacking samtools_1.24.orig.tar.gz dpkg-source: info: unpacking samtools_1.24-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.wlce11pgHv/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.24-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from /build/reproducible-path/samtools-1.24/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/consensus && rm -f *.bam *.bam.csi cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* *.fa.fai anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai cd test/stat && rm -f *.fa.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i -v autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: subdirectory $HTSDIR not present autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force configure.ac:71: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:71: the top level autoreconf: running: /usr/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/samtools-1.24' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:71: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:71: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --with-htslib=system checking for gawk... no checking for mawk... mawk checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C23 features... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for s390x-linux-gnu-gcc options to detect undeclared functions... none needed checking for s390x-linux-gnu-gcc options to ignore future-version functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking for s390x-linux-gnu-gcc option to support large files... none needed checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/samtools-1.24' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.24"' > version.h echo '#define SAMTOOLS_CC "s390x-linux-gnu-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/build/reproducible-path/samtools-1.24@«BUILDPATH»@g' version.h s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C bam_split.c: In function ‘prep_sam_file’: bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ bam_split.c: In function ‘init’: bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_ampliconclip.o bam_ampliconclip.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o amplicon_stats.o amplicon_stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_samples.o bam_samples.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_consensus.o bam_consensus.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_pileup.o consensus_pileup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reference.o reference.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reset.o reset.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram_size.o cram_size.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_checksum.o bam_checksum.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C sam_utils.c: In function ‘auto_index’: sam_utils.c:122:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 122 | char *delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o bam_checksum.o ./lz4/lz4.o libst.a -lhts -lcurses -lm -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -DMAQ_LONGREADS -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_count_rg.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_expand_format_string.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C In file included from test/split/test_parse_args.c:27: test/split/../../bam_split.c: In function ‘prep_sam_file’: test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 379 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ test/split/../../bam_split.c: In function ‘init’: test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 641 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/samtools-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C s390x-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_auto_install -- \ prefix=/usr install -m0755 -d /build/reproducible-path/samtools-1.24/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/samtools-1.24/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/build/reproducible-path/samtools-1.24' mkdir -p -m 755 /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin /build/reproducible-path/samtools-1.24/debian/tmp/usr/share/man/man1 install -p samtools /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/seq_cache_populate.py misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /build/reproducible-path/samtools-1.24/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /build/reproducible-path/samtools-1.24/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' chmod -R u\+rwX /build/reproducible-path/samtools-1.24/debian/tmp make clean make[2]: Entering directory '/build/reproducible-path/samtools-1.24' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/consensus && rm -f *.bam *.bam.csi cd test/dat && rm -f test_input_*.bam.bai view.*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* *.fa.fai anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* cd test/reference && rm -f mpileup.*.fai cd test/stat && rm -f *.fa.fai rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/build/reproducible-path/samtools-1.24' make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_install install -m0755 -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -m0755 -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -m0755 -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// install -m0755 -d debian/samtools/usr/share/man/man1 cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done # Disable the executable bit on a dataset. if [ -d debian/samtools-test ] \ ; then chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed \ ; fi make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installdocs -a install -m0755 -d debian/samtools/usr/share/doc/samtools install -m0755 -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./debian/README.test debian/samtools/usr/share/doc/samtools chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/samtools-1.24' dh_installchangelogs NEWS.md install -m0755 -d debian/samtools/usr/share/doc/samtools install -p -m0644 debian/.debhelper/generated/samtools/dh_installchangelogs.dch.trimmed debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 NEWS.md debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installexamples -a install -m0755 -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples rm -f debian/samtools.debhelper.log debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/samtools-1.24' # Fix whatis entries for subcommands; "samtools subcommand \- desc." # will confuse the lexer, but "samtools-subcommand \- desc." will work. sed -i '/^\.SH NAME/{n;s/^\([^ ]\+\) \([^ ]\+\) \\- /\1-\2 \\- /}' \ debian/*/usr/share/man/man*/*.* # .EX expects a indentation width. sed -i 's/^.EX$/.EX 8/' debian/*/usr/share/man/man*/*.* make[1]: Leaving directory '/build/reproducible-path/samtools-1.24' dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-checksum.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconclip.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 mv debian/samtools/usr/share/man/man1/samtools-ampliconstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-checksum.1.dh-new debian/samtools/usr/share/man/man1/samtools-checksum.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-consensus.1.dh-new debian/samtools/usr/share/man/man1/samtools-consensus.1 mv debian/samtools/usr/share/man/man1/samtools-coverage.1.dh-new debian/samtools/usr/share/man/man1/samtools-coverage.1 mv debian/samtools/usr/share/man/man1/samtools-cram-size.1.dh-new debian/samtools/usr/share/man/man1/samtools-cram-size.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-head.1.dh-new debian/samtools/usr/share/man/man1/samtools-head.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-import.1.dh-new debian/samtools/usr/share/man/man1/samtools-import.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reference.1.dh-new debian/samtools/usr/share/man/man1/samtools-reference.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-reset.1.dh-new debian/samtools/usr/share/man/man1/samtools-reset.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-samples.1.dh-new debian/samtools/usr/share/man/man1/samtools-samples.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-ampliconclip.1 debian/samtools/usr/share/man/man1/samtools-ampliconstats.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-checksum.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-consensus.1 debian/samtools/usr/share/man/man1/samtools-coverage.1 debian/samtools/usr/share/man/man1/samtools-cram-size.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-head.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-import.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reference.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-reset.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-samples.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -m0755 -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_missing -a dh_strip -a install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/080fbe91b705c57d480542eadb86984356d7c7.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/080fbe91b705c57d480542eadb86984356d7c7.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8e/080fbe91b705c57d480542eadb86984356d7c7.debug debian/samtools/usr/bin/wgsim install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ba s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ba/226d83152ad9d332bdff5a3e02d871763e9044.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ba/226d83152ad9d332bdff5a3e02d871763e9044.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ba/226d83152ad9d332bdff5a3e02d871763e9044.debug debian/samtools/usr/bin/md5sum-lite install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6e s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6e/b44eab663bc46c93fb1a9be91698d4f21b0042.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6e/b44eab663bc46c93fb1a9be91698d4f21b0042.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6e/b44eab663bc46c93fb1a9be91698d4f21b0042.debug debian/samtools/usr/bin/md5fa install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6a s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6a/7dee1b48c0be0c7d209bda64a72d7c8622e1c3.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6a/7dee1b48c0be0c7d209bda64a72d7c8622e1c3.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/6a/7dee1b48c0be0c7d209bda64a72d7c8622e1c3.debug debian/samtools/usr/bin/maq2sam-short install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/79 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/79/cd08d8830999727ee0a79d269831abab0d646e.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/79/cd08d8830999727ee0a79d269831abab0d646e.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/79/cd08d8830999727ee0a79d269831abab0d646e.debug debian/samtools/usr/bin/maq2sam-long install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/72 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/72/6c446e160c7d59b2d9e34deb661295a4e479a6.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/72/6c446e160c7d59b2d9e34deb661295a4e479a6.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/72/6c446e160c7d59b2d9e34deb661295a4e479a6.debug debian/samtools/usr/bin/ace2sam install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/94 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/94/3189079cd7af81b923218fad1ebf345ce01689.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/94/3189079cd7af81b923218fad1ebf345ce01689.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/94/3189079cd7af81b923218fad1ebf345ce01689.debug debian/samtools/usr/bin/samtools install -m0755 -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym install -m0755 -d debian/.debhelper/samtools dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars --package=samtools debian/samtools/usr/bin/wgsim debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/samtools dh_fixperms -a find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_strip_nondeterminism -a Using 1789984707 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-checksum.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/README usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-ampliconclip.1 usr/share/man/man1/samtools-ampliconstats.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-checksum.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-consensus.1 usr/share/man/man1/samtools-coverage.1 usr/share/man/man1/samtools-cram-size.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-head.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-import.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reference.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-reset.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-samples.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/build/reproducible-path/samtools-1.24' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_installdeb -a install -m0755 -d debian/samtools/DEBIAN dh_computeautosubstvars -a mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars mv debian/samtools.substvars.new debian/samtools.substvars dh_gencontrol -a install -m0755 -d debian/samtools/DEBIAN install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools-dbgsym -ldebian/changelog -T/dev/null -cdebian/.debhelper/generated/samtools/rewritten-dctrl -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=samtools-dbgsym -DDepends="samtools (= \${binary:Version})" -DDescription="debug symbols for samtools" -DBuild-Ids="6a7dee1b48c0be0c7d209bda64a72d7c8622e1c3 6eb44eab663bc46c93fb1a9be91698d4f21b0042 726c446e160c7d59b2d9e34deb661295a4e479a6 79cd08d8830999727ee0a79d269831abab0d646e 8e080fbe91b705c57d480542eadb86984356d7c7 943189079cd7af81b923218fad1ebf345ce01689 ba226d83152ad9d332bdff5a3e02d871763e9044" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -cdebian/.debhelper/generated/samtools/rewritten-dctrl -Pdebian/samtools dpkg-gencontrol: warning: Depends field of package samtools: substitution variable ${misc:Depends} used, but is not defined chmod 0644 -- debian/samtools/DEBIAN/control dh_md5sums -a install -m0755 -d debian/samtools/DEBIAN cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/samtools/dbgsym-root/DEBIAN cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.24-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.24-2_s390x.deb'. dpkg-genbuildinfo --build=any -O../samtools_1.24-2_s390x.buildinfo dpkg-genchanges --build=any -O../samtools_1.24-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/samtools-1.24/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-08T14:11:13Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Thu, 08 Oct 2026 14:11:13 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/samtools-1.24/ ---------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/samtools-1.24/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 08 Oct 2026 14:11:13 +0000 | +------------------------------------------------------------------------------+ samtools_1.24-2_s390x.changes: ------------------------------ Format: 1.8 Date: Mon, 21 Sep 2026 11:58:27 +0200 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.24-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.24-2) unstable; urgency=medium . * Upload to unstable Checksums-Sha1: 4edcd53236a0a91deb359e266453f07d8447c0ef 1247284 samtools-dbgsym_1.24-2_s390x.deb a59d328e8564569d4a5fd1350794d68783f665be 6830 samtools_1.24-2_s390x.buildinfo 014908cc537675c1a3df2306fcf9fd20f4284dce 716776 samtools_1.24-2_s390x.deb Checksums-Sha256: 924301171ac4b8215104bbd03e1987af0ae8ef0ef2b14ae83b15afd93019cffb 1247284 samtools-dbgsym_1.24-2_s390x.deb de830189f9277ee67d94d25f423e6bca2d025bfd4ee25300a5d5d3aa1a1d3094 6830 samtools_1.24-2_s390x.buildinfo 01e650fde40fcb21b8a16bcbbbdeac2dfd7b3419e55d42cf393773eaee553893 716776 samtools_1.24-2_s390x.deb Files: ec98c8fcbb881a6cc7b00517083d3d9a 1247284 debug optional samtools-dbgsym_1.24-2_s390x.deb 5e10720d26cfb13bed75061a9da74c25 6830 science optional samtools_1.24-2_s390x.buildinfo c728e9c3653168c1e85e75e7910aaf89 716776 science optional samtools_1.24-2_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 08 Oct 2026 14:11:14 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-dbgsym Architecture: s390x Version: 1.24-2 Checksums-Md5: ec98c8fcbb881a6cc7b00517083d3d9a 1247284 samtools-dbgsym_1.24-2_s390x.deb c728e9c3653168c1e85e75e7910aaf89 716776 samtools_1.24-2_s390x.deb Checksums-Sha1: 4edcd53236a0a91deb359e266453f07d8447c0ef 1247284 samtools-dbgsym_1.24-2_s390x.deb 014908cc537675c1a3df2306fcf9fd20f4284dce 716776 samtools_1.24-2_s390x.deb Checksums-Sha256: 924301171ac4b8215104bbd03e1987af0ae8ef0ef2b14ae83b15afd93019cffb 1247284 samtools-dbgsym_1.24-2_s390x.deb 01e650fde40fcb21b8a16bcbbbdeac2dfd7b3419e55d42cf393773eaee553893 716776 samtools_1.24-2_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 08 Oct 2026 14:11:13 +0000 Build-Path: /build/reproducible-path/samtools-1.24 Installed-Build-Depends: autoconf (= 2.73-2), autoconf-archive (= 20241016-3), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), bash-completion (= 1:2.16.0-8), binutils (= 2.47-6), binutils-common (= 2.47-6), binutils-x86-64-linux-gnu (= 2.47-6), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), comerr-dev (= 2.1-1.47.4-1+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.24.2-2), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47-6), libblkid1 (= 2.42.4-1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcom-err2 (= 1.47.4-1+b2), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcurl4-gnutls (= 8.23.0~rc2-1), libcurl4-gnutls-dev (= 8.23.0~rc2-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libhogweed6t64 (= 3.10.2-1+b1), libhts-dev (= 1.24-3), libhts3t64 (= 1.24-3), libhtscodecs2 (= 1.6.7-1), libhwasan0 (= 16.2.0-3), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-3), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncurses-dev (= 6.6+20260608-2), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls-dev (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libquadmath0 (= 16.2.0-3), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsmartcols1 (= 2.42.4-1), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.5-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262-1), libunbound8 (= 1.26.1-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.9-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tabix (= 1.24-3), tar (= 1.35+dfsg-6), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1789984707" +------------------------------------------------------------------------------+ | Package contents Thu, 08 Oct 2026 14:11:14 +0000 | +------------------------------------------------------------------------------+ samtools-dbgsym_1.24-2_s390x.deb -------------------------------- new Debian package, version 2.0. size 1247284 bytes: control archive=864 bytes. 619 bytes, 12 lines control 742 bytes, 7 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.24-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2254 Depends: samtools (= 1.24-2) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 6a7dee1b48c0be0c7d209bda64a72d7c8622e1c3 6eb44eab663bc46c93fb1a9be91698d4f21b0042 726c446e160c7d59b2d9e34deb661295a4e479a6 79cd08d8830999727ee0a79d269831abab0d646e 8e080fbe91b705c57d480542eadb86984356d7c7 943189079cd7af81b923218fad1ebf345ce01689 ba226d83152ad9d332bdff5a3e02d871763e9044 drwxr-xr-x root/root 0 2026-09-21 09:58 ./ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 19512 2026-09-21 09:58 ./usr/lib/debug/.build-id/6a/7dee1b48c0be0c7d209bda64a72d7c8622e1c3.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 21216 2026-09-21 09:58 ./usr/lib/debug/.build-id/6e/b44eab663bc46c93fb1a9be91698d4f21b0042.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/72/ -rw-r--r-- root/root 52840 2026-09-21 09:58 ./usr/lib/debug/.build-id/72/6c446e160c7d59b2d9e34deb661295a4e479a6.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/79/ -rw-r--r-- root/root 19512 2026-09-21 09:58 ./usr/lib/debug/.build-id/79/cd08d8830999727ee0a79d269831abab0d646e.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/8e/ -rw-r--r-- root/root 43520 2026-09-21 09:58 ./usr/lib/debug/.build-id/8e/080fbe91b705c57d480542eadb86984356d7c7.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/94/ -rw-r--r-- root/root 2117664 2026-09-21 09:58 ./usr/lib/debug/.build-id/94/3189079cd7af81b923218fad1ebf345ce01689.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 12992 2026-09-21 09:58 ./usr/lib/debug/.build-id/ba/226d83152ad9d332bdff5a3e02d871763e9044.debug drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.24-2_s390x.deb ------------------------- new Debian package, version 2.0. size 716776 bytes: control archive=3068 bytes. 1193 bytes, 18 lines control 5815 bytes, 85 lines md5sums Package: samtools Version: 1.24-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1601 Depends: python3, libc6 (>= 2.38), libhts3t64 (>= 1.24), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4), perl:any Suggests: cwltool Section: science Priority: optional Homepage: https://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. Commands: ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, novo2sam.pl, plot-ampliconstats, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, seq_cache_populate.py, soap2sam.pl, wgsim, wgsim_eval.pl, zoom2sam.pl drwxr-xr-x root/root 0 2026-09-21 09:58 ./ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/bin/ -rwxr-xr-x root/root 22536 2026-09-21 09:58 ./usr/bin/ace2sam -rwxr-xr-x root/root 5443 2026-09-21 09:58 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2026-09-21 09:58 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2026-09-21 09:58 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 3300 2026-09-21 09:58 ./usr/bin/fasta-sanitize.pl -rwxr-xr-x root/root 6121 2026-09-21 09:58 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 10248 2026-09-21 09:58 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 10248 2026-09-21 09:58 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 14344 2026-09-21 09:58 ./usr/bin/md5fa -rwxr-xr-x root/root 10248 2026-09-21 09:58 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2026-09-21 09:58 ./usr/bin/novo2sam.pl -rwxr-xr-x root/root 44331 2026-09-21 09:58 ./usr/bin/plot-ampliconstats -rwxr-xr-x root/root 58988 2026-09-21 09:58 ./usr/bin/plot-bamstats -rwxr-xr-x root/root 3204 2026-09-21 09:58 ./usr/bin/psl2sam.pl -rwxr-xr-x root/root 8957 2026-09-21 09:58 ./usr/bin/sam2vcf.pl -rwxr-xr-x root/root 939704 2026-09-21 09:58 ./usr/bin/samtools -rwxr-xr-x root/root 16474 2026-09-21 09:58 ./usr/bin/samtools.pl -rwxr-xr-x root/root 11337 2026-09-21 09:58 ./usr/bin/seq_cache_populate.pl -rwxr-xr-x root/root 12306 2026-07-09 09:41 ./usr/bin/seq_cache_populate.py -rwxr-xr-x root/root 3905 2026-09-21 09:58 ./usr/bin/soap2sam.pl -rwxr-xr-x root/root 22576 2026-09-21 09:58 ./usr/bin/wgsim -rwxr-xr-x root/root 12542 2026-09-21 09:58 ./usr/bin/wgsim_eval.pl -rwxr-xr-x root/root 3579 2026-09-21 09:58 ./usr/bin/zoom2sam.pl drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/commonwl/ -rwxr-xr-x root/root 1906 2026-09-21 09:58 ./usr/share/commonwl/samtools-faidx.cwl -rwxr-xr-x root/root 1979 2026-09-21 09:58 ./usr/share/commonwl/samtools-index.cwl -rwxr-xr-x root/root 1627 2026-09-21 09:58 ./usr/share/commonwl/samtools-rmdup.cwl -rwxr-xr-x root/root 2834 2026-09-21 09:58 ./usr/share/commonwl/samtools-sort.cwl -rwxr-xr-x root/root 6224 2026-09-21 09:58 ./usr/share/commonwl/samtools-view.cwl drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools/ -rw-r--r-- root/root 828 2026-07-09 09:41 ./usr/share/doc/samtools/AUTHORS -rw-r--r-- root/root 497 2026-09-21 09:58 ./usr/share/doc/samtools/README.Debian -rw-r--r-- root/root 2479 2026-07-09 09:41 ./usr/share/doc/samtools/README.gz -rw-r--r-- root/root 313 2026-09-21 09:58 ./usr/share/doc/samtools/README.test -rw-r--r-- root/root 1479 2026-09-21 09:58 ./usr/share/doc/samtools/changelog.Debian.gz -rw-r--r-- root/root 42937 2026-07-09 09:41 ./usr/share/doc/samtools/changelog.gz -rw-r--r-- root/root 3591 2026-09-21 09:58 ./usr/share/doc/samtools/copyright drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/doc/samtools/examples/ -rw-r--r-- root/root 1315 2026-07-09 09:41 ./usr/share/doc/samtools/examples/00README.txt -rw-r--r-- root/root 3225 2026-07-09 09:41 ./usr/share/doc/samtools/examples/ex1.fa -rw-r--r-- root/root 114565 2026-09-21 09:58 ./usr/share/doc/samtools/examples/ex1.sam.gz -rw-r--r-- root/root 98 2026-07-09 09:41 ./usr/share/doc/samtools/examples/toy.fa -rw-r--r-- root/root 786 2026-07-09 09:41 ./usr/share/doc/samtools/examples/toy.sam drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 241 2026-09-21 09:58 ./usr/share/lintian/overrides/samtools drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/man/ drwxr-xr-x root/root 0 2026-09-21 09:58 ./usr/share/man/man1/ -rw-r--r-- root/root 462 2026-09-21 09:58 ./usr/share/man/man1/ace2sam.1.gz -rw-r--r-- root/root 1637 2026-09-21 09:58 ./usr/share/man/man1/samtools-addreplacerg.1.gz -rw-r--r-- root/root 2486 2026-09-21 09:58 ./usr/share/man/man1/samtools-ampliconclip.1.gz -rw-r--r-- root/root 5835 2026-09-21 09:58 ./usr/share/man/man1/samtools-ampliconstats.1.gz -rw-r--r-- root/root 2394 2026-09-21 09:58 ./usr/share/man/man1/samtools-bedcov.1.gz -rw-r--r-- root/root 2299 2026-09-21 09:58 ./usr/share/man/man1/samtools-calmd.1.gz -rw-r--r-- root/root 2667 2026-09-21 09:58 ./usr/share/man/man1/samtools-cat.1.gz -rw-r--r-- root/root 5919 2026-09-21 09:58 ./usr/share/man/man1/samtools-checksum.1.gz -rw-r--r-- root/root 2473 2026-09-21 09:58 ./usr/share/man/man1/samtools-collate.1.gz -rw-r--r-- root/root 6648 2026-09-21 09:58 ./usr/share/man/man1/samtools-consensus.1.gz -rw-r--r-- root/root 2722 2026-09-21 09:58 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./usr/share/man/man1/samtools-reset.1.gz -rw-r--r-- root/root 1469 2026-09-21 09:58 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 2278 2026-09-21 09:58 ./usr/share/man/man1/samtools-samples.1.gz -rw-r--r-- root/root 4929 2026-09-21 09:58 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 2796 2026-09-21 09:58 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 6955 2026-09-21 09:58 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1426 2026-09-21 09:58 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 2044 2026-09-21 09:58 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 7924 2026-09-21 09:58 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 17386 2026-09-21 09:58 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2026-09-21 09:58 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2026-09-21 09:58 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-wxkr1B/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Sources [1451 B] Get:5 copy:/build/reproducible-path/resolver-wxkr1B/apt_archive ./ Packages [1503 B] Fetched 3569 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libappstream5 : Depends: libcurl4-gnutls (>= 8.20.0-3~) but it is not going to be installed E: Broken packages apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build Thu, 08 Oct 2026 14:11:20 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 08 Oct 2026 14:11:20 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 08 Oct 2026 14:11:21 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 54 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 15 Job: samtools_1.24-2 Lintian: error Machine Architecture: amd64 Package: samtools Package-Time: 80 Source-Version: 1.24-2 Space: n/a Status: successful Version: 1.24-2 -------------------------------------------------------------------------------- Finished at 2026-10-08T14:11:13Z Build needed 00:01:20, no disk space