sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | samtools 1.9-5 (ppc64el) Mon, 21 Oct 2019 20:41:38 +0000 | +==============================================================================+ Package: samtools Version: 1.9-5 Source Version: 1.9-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-7b24827e-8f69-4647-b3a9-edd7db2a80f0' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-X7FaLb/resolver-ftW2Na' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-21-0816.32.pdiff [6172 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-21-1419.21.pdiff [23.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-21-1419.21.pdiff [23.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-21-0816.32.pdiff [19.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-21-1419.21.pdiff [26.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-21-1419.21.pdiff [26.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8015 kB] Fetched 8285 kB in 2s (4263 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils linux-libc-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5220 kB of archives. After this operation, 249 kB disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.33.1-2 [58.0 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.33.1-2 [1611 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.33.1-2 [469 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.33.1-2 [2087 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev amd64 5.3.7-1 [994 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5220 kB in 0s (53.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14991 files and directories currently installed.) Preparing to unpack .../binutils_2.33.1-2_amd64.deb ... Unpacking binutils (2.33.1-2) over (2.33.1-1) ... Preparing to unpack .../binutils-x86-64-linux-gnu_2.33.1-2_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.33.1-2) over (2.33.1-1) ... Preparing to unpack .../libbinutils_2.33.1-2_amd64.deb ... Unpacking libbinutils:amd64 (2.33.1-2) over (2.33.1-1) ... Preparing to unpack .../binutils-common_2.33.1-2_amd64.deb ... Unpacking binutils-common:amd64 (2.33.1-2) over (2.33.1-1) ... Preparing to unpack .../linux-libc-dev_5.3.7-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.3.7-1) over (5.2.17-1+b1) ... Setting up binutils-common:amd64 (2.33.1-2) ... Setting up linux-libc-dev:amd64 (5.3.7-1) ... Setting up libbinutils:amd64 (2.33.1-2) ... Setting up binutils-x86-64-linux-gnu (2.33.1-2) ... Setting up binutils (2.33.1-2) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4122 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main samtools 1.9-5 (dsc) [2444 B] Get:2 http://debian.oregonstate.edu/debian unstable/main samtools 1.9-5 (tar) [4099 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main samtools 1.9-5 (diff) [20.8 kB] Fetched 4122 kB in 0s (46.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-X7FaLb/samtools-1.9' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-X7FaLb' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.9), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.9), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [488 B] Get:5 copy:/<>/apt_archive ./ Packages [559 B] Fetched 2004 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-powerpc64le-linux-gnu bsdmainutils cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbrotli1:ppc64el libbsd0 libbz2-1.0:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:ppc64el libelf1 libffi6:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc1:ppc64el libgcc1-ppc64el-cross libgcrypt20:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgpg-error0:ppc64el libgssapi-krb5-2:ppc64el libhogweed4:ppc64el libhts-dev:ppc64el libhts2:ppc64el libicu63 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2:ppc64el libldap-common liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libncurses-dev:ppc64el libncurses5-dev:ppc64el libncurses6 libncurses6:ppc64el libncursesw6:ppc64el libnettle6:ppc64el libnghttp2-14:ppc64el libp11-kit0:ppc64el libpipeline1 libpsl5:ppc64el libquadmath0:ppc64el libquadmath0-ppc64el-cross librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libsigsegv2 libssh2-1:ppc64el libssl1.1:ppc64el libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtasn1-6:ppc64el libtinfo6:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db pkg-config po-debconf sensible-utils tabix:ppc64el ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-ppc64el-cross libgcc1-dbg-ppc64el-cross libgomp1-dbg-ppc64el-cross libitm1-dbg-ppc64el-cross libatomic1-dbg-ppc64el-cross libasan5-dbg-ppc64el-cross liblsan0-dbg-ppc64el-cross libtsan0-dbg-ppc64el-cross libubsan1-dbg-ppc64el-cross libquadmath0-dbg-ppc64el-cross manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el manpages-dev:ppc64el rng-tools:ppc64el gnutls-bin:ppc64el krb5-doc:ppc64el krb5-user:ppc64el liblzma-doc:ppc64el ncurses-doc:ppc64el libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:ppc64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:ppc64el krb5-locales:ppc64el libgpm2 libgpm2:ppc64el publicsuffix:ppc64el libsasl2-modules:ppc64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-powerpc64le-linux-gnu bsdmainutils cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbrotli1:ppc64el libbsd0 libbz2-1.0:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:ppc64el libelf1 libffi6:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc1:ppc64el libgcc1-ppc64el-cross libgcrypt20:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgpg-error0:ppc64el libgssapi-krb5-2:ppc64el libhogweed4:ppc64el libhts-dev:ppc64el libhts2:ppc64el libicu63 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2:ppc64el libldap-common liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libncurses-dev:ppc64el libncurses5-dev:ppc64el libncurses6 libncurses6:ppc64el libncursesw6:ppc64el libnettle6:ppc64el libnghttp2-14:ppc64el libp11-kit0:ppc64el libpipeline1 libpsl5:ppc64el libquadmath0:ppc64el libquadmath0-ppc64el-cross librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libsigsegv2 libssh2-1:ppc64el libssl1.1:ppc64el libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtasn1-6:ppc64el libtinfo6:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils tabix:ppc64el ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 81.6 MB of archives. After this operation, 339 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf-archive all 20190106-2 [749 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b5 [18.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.2.1-9 [193 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 bash-completion all 1:2.9-1 [224 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.33.1-2 [2237 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu-base amd64 9.2.1-8cross1 [193 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-powerpc64le-linux-gnu amd64 9.2.1-8cross1 [6739 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.29-1cross7 [1539 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-ppc64el-cross all 1:9.2.1-8cross1 [29.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 9.2.1-8cross1 [90.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 9.2.1-8cross1 [29.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 9.2.1-8cross1 [9760 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-ppc64el-cross all 9.2.1-8cross1 [401 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 9.2.1-8cross1 [147 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 9.2.1-8cross1 [295 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 9.2.1-8cross1 [502 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 9.2.1-8cross1 [139 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 9.2.1-8cross1 [148 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-ppc64el-cross all 9.2.1-8cross1 [1262 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu amd64 9.2.1-8cross1 [7096 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1480 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.2.9-2cross7 [1323 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.29-1cross7 [2671 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-ppc64el-cross all 9.2.1-8cross1 [1725 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-powerpc64le-linux-gnu amd64 9.2.1-8cross1 [7321 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1188 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.1-1 [14.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7 [173 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.1-1 [1317 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7 [995 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc1 ppc64el 1:9.2.1-9 [29.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.29-2 [2817 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.2.1-9 [408 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 9.2.1-9 [9824 B] Get:85 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.7-3 [275 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-2 [50.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.3.7-1 [989 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.29-2 [2678 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.45.4-1 [71.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-4 [250 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main ppc64el libnettle6 ppc64el 3.5.1+really3.4.1-1 [238 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main ppc64el libhogweed4 ppc64el 3.5.1+really3.4.1-1 [144 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main ppc64el libunistring2 ppc64el 0.9.10-2 [381 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main ppc64el libidn2-0 ppc64el 2.2.0-2 [84.8 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi6 ppc64el 3.2.1-9 [21.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main ppc64el libp11-kit0 ppc64el 0.23.18.1-2 [321 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main ppc64el libtasn1-6 ppc64el 4.14-3 [58.7 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main ppc64el libgnutls30 ppc64el 3.6.9-5 [1144 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6-6 [16.2 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.17-6 [68.2 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.17-6 [127 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1d-2 [1523 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.17-6 [399 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.17-6 [170 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.6 [718 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-1 [71.1 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-1 [116 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main ppc64el libldap-2.4-2 ppc64el 2.4.48+dfsg-1+b1 [242 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.39.2-1 [89.4 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main ppc64el libpsl5 ppc64el 0.20.2-2 [55.6 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-1+b1 [94.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2 [60.2 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main ppc64el libgpg-error0 ppc64el 1.36-7 [77.9 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcrypt20 ppc64el 1.8.5-3 [530 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main ppc64el libssh2-1 ppc64el 1.8.0-2.1 [147 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl3-gnutls ppc64el 7.66.0-1 [344 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate0 ppc64el 1.3-3 [98.1 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 9.2.1-9 [92.4 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 9.2.1-9 [29.6 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 9.2.1-9 [147 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 9.2.1-9 [303 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 9.2.1-9 [541 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 9.2.1-9 [139 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 9.2.1-9 [148 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.2.1-9 [1262 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma5 ppc64el 5.2.4-1+b1 [162 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts2 ppc64el 1.9-11 [339 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma-dev ppc64el 5.2.4-1+b1 [221 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-1+b1 [215 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts-dev ppc64el 1.9-11 [4339 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libtinfo6 ppc64el 6.1+20190803-1 [340 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libncurses6 ppc64el 6.1+20190803-1 [114 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libncursesw6 ppc64el 6.1+20190803-1 [147 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libncurses-dev ppc64el 6.1+20190803-1 [376 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libncurses5-dev ppc64el 6.1+20190803-1 [940 B] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.2.1-9 [1744 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el tabix ppc64el 1.9-11 [324 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.6 MB in 1s (62.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14989 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../006-autoconf-archive_20190106-2_all.deb ... Unpacking autoconf-archive (20190106-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../007-liblocale-gettext-perl_1.07-3+b5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b5) ... Selecting previously unselected package gcc-9-base:ppc64el. Preparing to unpack .../008-gcc-9-base_9.2.1-9_ppc64el.deb ... Unpacking gcc-9-base:ppc64el (9.2.1-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package bash-completion. Preparing to unpack .../010-bash-completion_1%3a2.9-1_all.deb ... Unpacking bash-completion (1:2.9-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../012-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../016-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. 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Preparing to unpack .../039-libgcc-9-dev-ppc64el-cross_9.2.1-8cross1_all.deb ... Unpacking libgcc-9-dev-ppc64el-cross (9.2.1-8cross1) ... Selecting previously unselected package gcc-9-powerpc64le-linux-gnu. Preparing to unpack .../040-gcc-9-powerpc64le-linux-gnu_9.2.1-8cross1_amd64.deb ... Unpacking gcc-9-powerpc64le-linux-gnu (9.2.1-8cross1) ... Selecting previously unselected package gcc-powerpc64le-linux-gnu. Preparing to unpack .../041-gcc-powerpc64le-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-ppc64el-cross. Preparing to unpack .../042-linux-libc-dev-ppc64el-cross_5.2.9-2cross7_all.deb ... Unpacking linux-libc-dev-ppc64el-cross (5.2.9-2cross7) ... Selecting previously unselected package libc6-dev-ppc64el-cross. Preparing to unpack .../043-libc6-dev-ppc64el-cross_2.29-1cross7_all.deb ... Unpacking libc6-dev-ppc64el-cross (2.29-1cross7) ... Selecting previously unselected package libstdc++-9-dev-ppc64el-cross. Preparing to unpack .../044-libstdc++-9-dev-ppc64el-cross_9.2.1-8cross1_all.deb ... Unpacking libstdc++-9-dev-ppc64el-cross (9.2.1-8cross1) ... Selecting previously unselected package g++-9-powerpc64le-linux-gnu. Preparing to unpack .../045-g++-9-powerpc64le-linux-gnu_9.2.1-8cross1_amd64.deb ... Unpacking g++-9-powerpc64le-linux-gnu (9.2.1-8cross1) ... Selecting previously unselected package g++-powerpc64le-linux-gnu. Preparing to unpack .../046-g++-powerpc64le-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../047-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../048-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../049-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../050-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../051-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../052-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../053-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../054-libxml-libxml-perl_2.0134+dfsg-1+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../055-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../056-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../057-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../058-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../059-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../060-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../061-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-ppc64el. Preparing to unpack .../062-crossbuild-essential-ppc64el_12.8_all.deb ... Unpacking crossbuild-essential-ppc64el (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../063-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../064-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../065-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. 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Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.1-1) ... No schema files found: doing nothing. Setting up libc6-ppc64el-cross (2.29-1cross7) ... Setting up libdebhelper-perl (12.7) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:ppc64el (5.3.7-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autoconf-archive (20190106-2) ... Setting up file (1:5.37-5) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up gcc-9-powerpc64le-linux-gnu-base:amd64 (9.2.1-8cross1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-9-powerpc64le-linux-gnu (9.2.1-8cross1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up bash-completion (1:2.9-1) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up libitm1-ppc64el-cross (9.2.1-8cross1) ... Setting up libatomic1-ppc64el-cross (9.2.1-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up linux-libc-dev-ppc64el-cross (5.2.9-2cross7) ... Setting up libsub-override-perl (0.09-2) ... Setting up binutils-powerpc64le-linux-gnu (2.33.1-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b5) ... Setting up cpp-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up gcc-9-base:ppc64el (9.2.1-9) ... Setting up libfile-stripnondeterminism-perl (1.6.1-1) ... Setting up libgcc1-ppc64el-cross (1:9.2.1-8cross1) ... Setting up libc6-dev-ppc64el-cross (2.29-1cross7) ... Setting up libtool (2.4.6-11) ... Setting up libquadmath0-ppc64el-cross (9.2.1-8cross1) ... Setting up libasan5-ppc64el-cross (9.2.1-8cross1) ... Setting up m4 (1.4.18-2) ... Setting up libgomp1-ppc64el-cross (9.2.1-8cross1) ... Setting up liblsan0-ppc64el-cross (9.2.1-8cross1) ... Setting up libtsan0-ppc64el-cross (9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-ppc64el-cross (9.2.1-8cross1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-ppc64el-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-ppc64el-cross (9.2.1-8cross1) ... Setting up gcc-9-powerpc64le-linux-gnu (9.2.1-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-ppc64el-cross (9.2.1-8cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-9-powerpc64le-linux-gnu (9.2.1-8cross1) ... Setting up g++-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up dh-autoreconf (19) ... Setting up libc6:ppc64el (2.29-2) ... Setting up libtasn1-6:ppc64el (4.14-3) ... Setting up libc6-dev:ppc64el (2.29-2) ... Setting up libbz2-1.0:ppc64el (1.0.8-2) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg1-0.6) ... Setting up libitm1:ppc64el (9.2.1-9) ... Setting up libtinfo6:ppc64el (6.1+20190803-1) ... Setting up libkeyutils1:ppc64el (1.6-6) ... Setting up liblzma5:ppc64el (5.2.4-1+b1) ... Setting up libgpg-error0:ppc64el (1.36-7) ... Setting up libgcc1:ppc64el (1:9.2.1-9) ... Setting up libssl1.1:ppc64el (1.1.1d-2) ... Setting up libbrotli1:ppc64el (1.0.7-3) ... Setting up libnghttp2-14:ppc64el (1.39.2-1) ... Setting up libunistring2:ppc64el (0.9.10-2) ... Setting up libdeflate0:ppc64el (1.3-3) ... Setting up libgcrypt20:ppc64el (1.8.5-3) ... Setting up debhelper (12.7) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:ppc64el (3.2.1-9) ... Setting up libidn2-0:ppc64el (2.2.0-2) ... Setting up libcom-err2:ppc64el (1.45.4-1) ... Setting up libgomp1:ppc64el (9.2.1-9) ... Setting up libkrb5support0:ppc64el (1.17-6) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-1) ... Setting up libasan5:ppc64el (9.2.1-9) ... Setting up libgmp10:ppc64el (2:6.1.2+dfsg-4) ... Setting up libncurses6:ppc64el (6.1+20190803-1) ... Setting up libquadmath0:ppc64el (9.2.1-9) ... Setting up libp11-kit0:ppc64el (0.23.18.1-2) ... Setting up libatomic1:ppc64el (9.2.1-9) ... Setting up libncursesw6:ppc64el (6.1+20190803-1) ... Setting up libk5crypto3:ppc64el (1.17-6) ... Setting up libnettle6:ppc64el (3.5.1+really3.4.1-1) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-1) ... Setting up liblzma-dev:ppc64el (5.2.4-1+b1) ... Setting up dh-strip-nondeterminism (1.6.1-1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:ppc64el (1.8.0-2.1) ... Setting up libkrb5-3:ppc64el (1.17-6) ... Setting up libstdc++6:ppc64el (9.2.1-9) ... Setting up liblsan0:ppc64el (9.2.1-9) ... Setting up libtsan0:ppc64el (9.2.1-9) ... Setting up libncurses-dev:ppc64el (6.1+20190803-1) ... Setting up libpsl5:ppc64el (0.20.2-2) ... Setting up libhogweed4:ppc64el (3.5.1+really3.4.1-1) ... Setting up libgnutls30:ppc64el (3.6.9-5) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:ppc64el (1.17-6) ... Setting up libubsan1:ppc64el (9.2.1-9) ... Setting up libncurses5-dev:ppc64el (6.1+20190803-1) ... Setting up libldap-2.4-2:ppc64el (2.4.48+dfsg-1+b1) ... Setting up libcurl3-gnutls:ppc64el (7.66.0-1) ... Setting up libgcc-9-dev:ppc64el (9.2.1-9) ... Setting up tabix:ppc64el (1.9-11) ... Setting up libstdc++-9-dev:ppc64el (9.2.1-9) ... Setting up libhts2:ppc64el (1.9-11) ... Setting up libhts-dev:ppc64el (1.9-11) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-9 gcc-8_8.3.0-23 gcc-9_9.2.1-9 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-9 libstdc++-9-dev-ppc64el-cross_9.2.1-8cross1 libstdc++6_9.2.1-9 libstdc++6-ppc64el-cross_9.2.1-8cross1 linux-libc-dev_5.3.7-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 autoconf-archive_20190106-2 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 bash-completion_1:2.9-1 binutils_2.33.1-2 binutils-common_2.33.1-2 binutils-powerpc64le-linux-gnu_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-9 cpp-9-powerpc64le-linux-gnu_9.2.1-8cross1 cpp-powerpc64le-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-ppc64el_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-9 g++-9-powerpc64le-linux-gnu_9.2.1-8cross1 g++-powerpc64le-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-9 gcc-9-base_9.2.1-9 gcc-9-cross-base_9.2.1-8cross1 gcc-9-powerpc64le-linux-gnu_9.2.1-8cross1 gcc-9-powerpc64le-linux-gnu-base_9.2.1-8cross1 gcc-powerpc64le-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-9 libasan5-ppc64el-cross_9.2.1-8cross1 libatomic1_9.2.1-9 libatomic1-ppc64el-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-dev_2.29-2 libc6-dev-ppc64el-cross_2.29-1cross7 libc6-ppc64el-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-9 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.66.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.1-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-9 libgcc-9-dev-ppc64el-cross_9.2.1-8cross1 libgcc1_1:9.2.1-9 libgcc1-ppc64el-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-9 libgomp1-ppc64el-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-9 libitm1-ppc64el-cross_9.2.1-8cross1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b5 liblsan0_9.2.1-9 liblsan0-ppc64el-cross_9.2.1-8cross1 liblz4-1_1.9.1-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses-dev_6.1+20190803-1 libncurses5-dev_6.1+20190803-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-8 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_9.2.1-9 libquadmath0-ppc64el-cross_9.2.1-8cross1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-9 libstdc++-9-dev-ppc64el-cross_9.2.1-8cross1 libstdc++6_9.2.1-9 libstdc++6-ppc64el-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-9 libtsan0-ppc64el-cross_9.2.1-8cross1 libubsan1_9.2.1-9 libubsan1-ppc64el-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.7-1 linux-libc-dev-ppc64el-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-8 perl-base_5.30.0-8 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-8 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tabix_1.9-11 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 all Version: 1.9-5 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://www.htslib.org/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 12), bash-completion, libio-pty-perl , libncurses5-dev, libhts-dev (>= 1.9), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0) Package-List: samtools deb science optional arch=any-amd64,arm64,armel,armhf,mips,mips64el,mipsel,ppc64el,s390x,alpha,hppa,ia64,m68k,powerpc,powerpcspe,ppc64,riscv64,sh4,sparc64,x32 samtools-test deb science optional arch=all Checksums-Sha1: d5e163f7d7b232f99ac36d7749d5786b77af59d9 4098992 samtools_1.9.orig.tar.gz 4d4ffc995a33bf95c3ea877c27b38122443366d2 20776 samtools_1.9-5.debian.tar.xz Checksums-Sha256: 211600bd180d01030b3fe25baa7ae1c105106bed6c3f8d993f41dd278d44c637 4098992 samtools_1.9.orig.tar.gz 6bf2d1fec1ce861bf52e45919f21a872668ca04172e81bfde79992a6f5cb40d0 20776 samtools_1.9-5.debian.tar.xz Files: e2f2e401af7e8309075ba4545118819d 4098992 samtools_1.9.orig.tar.gz 077b5fc0e44e153254a732fec995af50 20776 samtools_1.9-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl1XuPMACgkQPCZ2P2xn 5uLfsxAArfqTkb/3XorXObTV/g8ZUWlyTDtvPEnlQ5rOJJG6HaCLh9WAJqIBnbz4 0v7UBOkHRD+/xrnRKwZvcp+ifNDC5msNrkFtJfj+QPZS2IcI6pRAJFthqjNKIZA/ 8A4KOiUduFcM53f3SRHvoNMHC9N82z81GqMQn1Seyl+1q2U+aDOOAXQPdTTYct+1 RPEXComYFsTvczopiJkfPAVjZoyh/Q4BYPyO8MsX9maJumAPw33X/L4cczi6OclH SxzzvitKCl5siL0CtYMOiRoydWGymw3lPmH/nzGVnl5iam0e59wY1nGRXft9ntP7 vV2flXJh7tVFGwDlTo4otDqBCFw+gmA7X/qjnVEFWuFO23+hFUblItp5nr+5C1Ro 3zSESeQUL3m05REz13SUORDlmpPjH0Cqq/0pNvideqYCK7RtBkupF6ycE8suv213 G1Fk9zuBu4ja31BxAhW8kIrmqtE69WnC//0r1pZct9k7K5Xc/WwK+uClDhpLerlT xm6Ah6dmDFMMmq227VpbQ9eGNZgLiIXYSfdmltwtyCY/8jy0hTZkXQlU3Z8cIqYp 8PrlmqKhXWFzwMz+iJ2Ay8qdwnIrQOmbfseIR3fcwYYDUVvZFajYSTs5Mf+5jwFi DSlaz3jfdqMPlkxhOMUuJW47fSomIVSm2JkwLYoYRbkdBezWwXc= =6d88 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 17 08:21:07 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./samtools_1.9-5.dsc dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.9.orig.tar.gz dpkg-source: info: unpacking samtools_1.9-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying sort-tests-memory-limit.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-7b24827e-8f69-4647-b3a9-edd7db2a80f0 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el dpkg-source: info: using options from samtools-1.9/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level autoconf configure.ac:56: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:56: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=powerpc64le-linux-gnu --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.ppc64el checking for powerpc64le-linux-gnu-gcc... powerpc64le-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether powerpc64le-linux-gnu-gcc accepts -g... yes checking for powerpc64le-linux-gnu-gcc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c echo '#define SAMTOOLS_VERSION "1.9"' > version.h powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_import.o bam_import.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_header.o sam_header.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c ar -csru libbam.a bam_aux.o bam.o bam_import.o sam.o sam_header.o bam_plbuf.o ar: `u' modifier ignored since `D' is the default (see `U') powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c In file included from /usr/powerpc64le-linux-gnu/include/stdio.h:867, from sam_opts.c:27: In function ‘fprintf’, inlined from ‘parse_sam_global_opt’ at sam_opts.c:85:9: /usr/powerpc64le-linux-gnu/include/bits/stdio2.h:100:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c ar -rcs libst.a sam_opts.o sam_utils.o powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_index.o bam_plcmd.o sam_view.o bam_cat.o bam_md.o bam_reheader.o bam_sort.o bedidx.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o bam2bcf_indel.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o ./lz4/lz4.o libbam.a libst.a -lhts -lcurses -lm -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c powerpc64le-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DMAQ_LONGREADS -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c powerpc64le-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c powerpc64le-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c powerpc64le-linux-gnu-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- \ prefix=/usr install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/share/man/man1 install -p samtools /<>/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /<>/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/varfilter.py misc/wgsim_eval.pl misc/zoom2sam.pl /<>/debian/tmp/usr/bin install -p -m 644 samtools.1 misc/wgsim.1 /<>/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/<>' make clean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ install -d debian/.debhelper/generated/samtools install -d debian/.debhelper/generated/samtools-test # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a install -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools chown -R 0:0 debian/samtools/usr/share/doc chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 debian/NEWS debian/samtools/usr/share/doc/samtools/NEWS.Debian install -p -m0644 NEWS debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/<>' dh_installexamples -a install -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples dh_installman -a man -l --recode UTF-8 ./debian/samtools/usr/share/man/man1/samtools.pl.1 > debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 man -l --recode UTF-8 ./debian/samtools/usr/share/man/man1/ace2sam.1 > debian/samtools/usr/share/man/man1/ace2sam.1.dh-new mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 man -l --recode UTF-8 ./debian/samtools/usr/share/man/man1/wgsim.1 > debian/samtools/usr/share/man/man1/wgsim.1.dh-new mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 man -l --recode UTF-8 ./debian/samtools/usr/share/man/man1/samtools.1 > debian/samtools/usr/share/man/man1/samtools.1.dh-new mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 chmod 0644 -- debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/wgsim.1 debian/samtools/usr/share/man/man1/samtools.1 dh_lintian -a install -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a dh_perl: /usr/lib/powerpc64le-linux-gnu/perl/cross-config-5.30.0/Config.pm does not exist (missing build dependency on perl-xs-dev?) (grep -a -s -v perl:Depends debian/samtools.substvars; echo perl:Depends=perl:any) > debian/samtools.substvars.new mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a dh_strip_nondeterminism -a Using 1566030007 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/<>' dh_fixperms -a find debian/samtools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -d debian/samtools/usr/lib/debug/.dwz/powerpc64le-linux-gnu dwz -mdebian/samtools/usr/lib/debug/.dwz/powerpc64le-linux-gnu/samtools.debug -M/usr/lib/debug/.dwz/powerpc64le-linux-gnu/samtools.debug -- debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/samtools debian/samtools/usr/bin/wgsim dwz: debian/samtools/usr/bin/samtools: DWARF compression not beneficial - old size 585352 new size 602729 powerpc64le-linux-gnu-objcopy --compress-debug-sections debian/samtools/usr/lib/debug/.dwz/powerpc64le-linux-gnu/samtools.debug dh_strip -a install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e9 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e9/7fff35cca2d75893466011fc79ed84a03ffe40.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e9/7fff35cca2d75893466011fc79ed84a03ffe40.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e9/7fff35cca2d75893466011fc79ed84a03ffe40.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e9/7fff35cca2d75893466011fc79ed84a03ffe40.debug debian/samtools/usr/bin/wgsim install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/31 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/31/61b7e23b15b86ed9ae42d35f8c4b4ef663a16b.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/31/61b7e23b15b86ed9ae42d35f8c4b4ef663a16b.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/31/61b7e23b15b86ed9ae42d35f8c4b4ef663a16b.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/31/61b7e23b15b86ed9ae42d35f8c4b4ef663a16b.debug debian/samtools/usr/bin/md5sum-lite install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3f powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3f/7996271e2ade77857fa6e4c7df7fa5f0972ace.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3f/7996271e2ade77857fa6e4c7df7fa5f0972ace.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3f/7996271e2ade77857fa6e4c7df7fa5f0972ace.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/3f/7996271e2ade77857fa6e4c7df7fa5f0972ace.debug debian/samtools/usr/bin/md5fa install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/b9 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/b9/31bab4933aa7431b0d813dbe0a2c505b58d3ab.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/b9/31bab4933aa7431b0d813dbe0a2c505b58d3ab.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/b9/31bab4933aa7431b0d813dbe0a2c505b58d3ab.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/b9/31bab4933aa7431b0d813dbe0a2c505b58d3ab.debug debian/samtools/usr/bin/maq2sam-short install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/33 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/33/23a5cd18ebea85f1969c197b4c741deca5e775.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/33/23a5cd18ebea85f1969c197b4c741deca5e775.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/33/23a5cd18ebea85f1969c197b4c741deca5e775.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/33/23a5cd18ebea85f1969c197b4c741deca5e775.debug debian/samtools/usr/bin/maq2sam-long install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/50 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/50/8928efa86a01ea6c33e9a3e18fb5d7ac708932.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/50/8928efa86a01ea6c33e9a3e18fb5d7ac708932.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/50/8928efa86a01ea6c33e9a3e18fb5d7ac708932.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/50/8928efa86a01ea6c33e9a3e18fb5d7ac708932.debug debian/samtools/usr/bin/ace2sam install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f1 powerpc64le-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f1/b192a45a2f4b2459a42877bf207d4b7464f60c.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f1/b192a45a2f4b2459a42877bf207d4b7464f60c.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f1/b192a45a2f4b2459a42877bf207d4b7464f60c.debug powerpc64le-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools powerpc64le-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/f1/b192a45a2f4b2459a42877bf207d4b7464f60c.debug debian/samtools/usr/bin/samtools install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/samtools/usr/lib/debug/.dwz/powerpc64le-linux-gnu debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/samtools/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/samtools/usr/lib/debug install -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars debian/samtools/usr/bin/samtools debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/wgsim dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/samtools.substvars echo misc:Pre-Depends= >> debian/samtools.substvars install -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=samtools-dbgsym "-DDepends=samtools (= \${binary:Version})" "-DDescription=debug symbols for samtools" "-DBuild-Ids=3161b7e23b15b86ed9ae42d35f8c4b4ef663a16b 3323a5cd18ebea85f1969c197b4c741deca5e775 3f7996271e2ade77857fa6e4c7df7fa5f0972ace 508928efa86a01ea6c33e9a3e18fb5d7ac708932 b931bab4933aa7431b0d813dbe0a2c505b58d3ab e97fff35cca2d75893466011fc79ed84a03ffe40 f1b192a45a2f4b2459a42877bf207d4b7464f60c" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/samtools -UMulti-Arch dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/samtools/DEBIAN/control chown 0:0 -- debian/samtools/DEBIAN/control dh_md5sums -a cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums chown 0:0 -- debian/samtools/DEBIAN/md5sums cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.9-5_ppc64el.deb'. dpkg-deb --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.9-5_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../samtools_1.9-5_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from samtools-1.9/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-10-21T20:43:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools_1.9-5_ppc64el.changes: ------------------------------- Format: 1.8 Date: Sat, 17 Aug 2019 10:20:07 +0200 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 1.9-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.9-5) unstable; urgency=medium . [ Andreas Tille ] * Use for libio-pty-perl . [ Michael R. Crusoe ] * Stop building on any-i386 due to htslib dropping i386 * debhelper-compat 12 * Standards-Version: 4.4.0 Checksums-Sha1: 1c50d8d6c2c5f61794e10af748ed87cb0f98ffcc 743168 samtools-dbgsym_1.9-5_ppc64el.deb aa2059377cb8a97973fbe1873becbf51f2ecf574 5630 samtools_1.9-5_ppc64el.buildinfo f3d57166b6240eb7dd0b34186d78a352693f3208 463620 samtools_1.9-5_ppc64el.deb Checksums-Sha256: f8061124e93935b8359b70b610aef79d786ab547a89825703726e8171eb66611 743168 samtools-dbgsym_1.9-5_ppc64el.deb b78bbee0e05ddfc22d7aa3f583718a4a52f01956e948b1b2d744a89e8c02350b 5630 samtools_1.9-5_ppc64el.buildinfo 4cad99305ea4461f2c2a6b80e26e4ca8ae48a0ef7e6765f5da13ca4505e34432 463620 samtools_1.9-5_ppc64el.deb Files: c5138ce6d237724055e2a67940fbebc2 743168 debug optional samtools-dbgsym_1.9-5_ppc64el.deb 839c09406a5a8b6d611271e27cfafcf0 5630 science optional samtools_1.9-5_ppc64el.buildinfo 97861cce822a0cf30804e23aed777813 463620 science optional samtools_1.9-5_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-test Architecture: ppc64el Version: 1.9-5 Checksums-Md5: c5138ce6d237724055e2a67940fbebc2 743168 samtools-dbgsym_1.9-5_ppc64el.deb 97861cce822a0cf30804e23aed777813 463620 samtools_1.9-5_ppc64el.deb Checksums-Sha1: 1c50d8d6c2c5f61794e10af748ed87cb0f98ffcc 743168 samtools-dbgsym_1.9-5_ppc64el.deb f3d57166b6240eb7dd0b34186d78a352693f3208 463620 samtools_1.9-5_ppc64el.deb Checksums-Sha256: f8061124e93935b8359b70b610aef79d786ab547a89825703726e8171eb66611 743168 samtools-dbgsym_1.9-5_ppc64el.deb 4cad99305ea4461f2c2a6b80e26e4ca8ae48a0ef7e6765f5da13ca4505e34432 463620 samtools_1.9-5_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 21 Oct 2019 20:43:26 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), autoconf-archive (= 20190106-2), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), bash-completion (= 1:2.9-1), binutils (= 2.33.1-2), binutils-common (= 2.33.1-2), binutils-x86-64-linux-gnu (= 2.33.1-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-23), cpp-9 (= 9.2.1-9), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-9), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-23), gcc-8-base (= 8.3.0-23), gcc-9 (= 9.2.1-9), gcc-9-base (= 9.2.1-9), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-9), libatomic1 (= 9.2.1-9), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.33.1-2), libblkid1 (= 2.34-0.1), libbrotli1 (= 1.0.7-3), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-2), libc-dev-bin (= 2.29-2), libc6 (= 2.29-2), libc6-dev (= 2.29-2), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-9), libcom-err2 (= 1.45.4-1), libcroco3 (= 0.6.13-1), libcurl3-gnutls (= 7.66.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7), libdeflate0 (= 1.3-3), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.1-1), libgcc-8-dev (= 8.3.0-23), libgcc-9-dev (= 9.2.1-9), libgcc1 (= 1:9.2.1-9), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.1-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-5), libgomp1 (= 9.2.1-9), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhogweed4 (= 3.5.1+really3.4.1-1), libhts-dev (= 1.9-11), libhts2 (= 1.9-11), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-9), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1+b1), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.2.1-9), liblz4-1 (= 1.9.1-2), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-23), libncurses-dev (= 6.1+20190803-1), libncurses5-dev (= 6.1+20190803-1), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnettle6 (= 3.5.1+really3.4.1-1), libnghttp2-14 (= 1.39.2-1), libp11-kit0 (= 0.23.18.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-8), libpipeline1 (= 1.5.1-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.2.1-9), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-9), libstdc++6 (= 9.2.1-9), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-7), libtasn1-6 (= 4.14-3), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-9), libubsan1 (= 9.2.1-9), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.3.7-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.30.0-8), perl-base (= 5.30.0-8), perl-modules-5.30 (= 5.30.0-8), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96-1), tabix (= 1.9-11), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1566030007" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ samtools-dbgsym_1.9-5_ppc64el.deb --------------------------------- new Debian package, version 2.0. size 743168 bytes: control archive=904 bytes. 618 bytes, 12 lines control 832 bytes, 8 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.9-5 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 831 Depends: samtools (= 1.9-5) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 3161b7e23b15b86ed9ae42d35f8c4b4ef663a16b 3323a5cd18ebea85f1969c197b4c741deca5e775 3f7996271e2ade77857fa6e4c7df7fa5f0972ace 508928efa86a01ea6c33e9a3e18fb5d7ac708932 b931bab4933aa7431b0d813dbe0a2c505b58d3ab e97fff35cca2d75893466011fc79ed84a03ffe40 f1b192a45a2f4b2459a42877bf207d4b7464f60c drwxr-xr-x root/root 0 2019-08-17 08:20 ./ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/31/ -rw-r--r-- root/root 8848 2019-08-17 08:20 ./usr/lib/debug/.build-id/31/61b7e23b15b86ed9ae42d35f8c4b4ef663a16b.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/33/ -rw-r--r-- root/root 13192 2019-08-17 08:20 ./usr/lib/debug/.build-id/33/23a5cd18ebea85f1969c197b4c741deca5e775.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 12128 2019-08-17 08:20 ./usr/lib/debug/.build-id/3f/7996271e2ade77857fa6e4c7df7fa5f0972ace.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/50/ -rw-r--r-- root/root 26136 2019-08-17 08:20 ./usr/lib/debug/.build-id/50/8928efa86a01ea6c33e9a3e18fb5d7ac708932.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/b9/ -rw-r--r-- root/root 13200 2019-08-17 08:20 ./usr/lib/debug/.build-id/b9/31bab4933aa7431b0d813dbe0a2c505b58d3ab.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/e9/ -rw-r--r-- root/root 24080 2019-08-17 08:20 ./usr/lib/debug/.build-id/e9/7fff35cca2d75893466011fc79ed84a03ffe40.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.build-id/f1/ -rw-r--r-- root/root 728936 2019-08-17 08:20 ./usr/lib/debug/.build-id/f1/b192a45a2f4b2459a42877bf207d4b7464f60c.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 3720 2019-08-17 08:20 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/samtools.debug drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-08-17 08:20 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.9-5_ppc64el.deb -------------------------- new Debian package, version 2.0. size 463620 bytes: control archive=1976 bytes. 841 bytes, 17 lines control 2701 bytes, 43 lines md5sums Package: samtools Version: 1.9-5 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1481 Depends: libc6 (>= 2.29), libhts2 (>= 1.9), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4) Recommends: python, cwltool Section: science Priority: optional Homepage: http://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. drwxr-xr-x root/root 0 2019-08-17 08:20 ./ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/bin/ -rwxr-xr-x root/root 67744 2019-08-17 08:20 ./usr/bin/ace2sam -rwxr-xr-x root/root 5437 2019-08-17 08:20 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2019-08-17 08:20 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 18028 2019-08-17 08:20 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 6121 2019-08-17 08:20 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 67744 2019-08-17 08:20 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 67744 2019-08-17 08:20 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 67744 2019-08-17 08:20 ./usr/bin/md5fa -rwxr-xr-x root/root 67744 2019-08-17 08:20 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 6769 2019-08-17 08:20 ./usr/bin/novo2sam.pl -rwxr-xr-x root/root 48826 2019-08-17 08:20 ./usr/bin/plot-bamstats -rwxr-xr-x root/root 3204 2019-08-17 08:20 ./usr/bin/psl2sam.pl -rwxr-xr-x root/root 8957 2019-08-17 08:20 ./usr/bin/sam2vcf.pl -rwxr-xr-x root/root 723088 2019-08-17 08:20 ./usr/bin/samtools -rwxr-xr-x root/root 16474 2019-08-17 08:20 ./usr/bin/samtools.pl -rwxr-xr-x root/root 11101 2019-08-17 08:20 ./usr/bin/seq_cache_populate.pl -rwxr-xr-x root/root 3905 2019-08-17 08:20 ./usr/bin/soap2sam.pl -rwxr-xr-x root/root 7888 2018-07-18 08:33 ./usr/bin/varfilter.py -rwxr-xr-x root/root 67880 2019-08-17 08:20 ./usr/bin/wgsim -rwxr-xr-x root/root 12536 2019-08-17 08:20 ./usr/bin/wgsim_eval.pl -rwxr-xr-x root/root 3579 2019-08-17 08:20 ./usr/bin/zoom2sam.pl drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/commonwl/ -rwxr-xr-x root/root 1906 2019-08-17 08:15 ./usr/share/commonwl/samtools-faidx.cwl -rwxr-xr-x root/root 1979 2019-08-17 08:15 ./usr/share/commonwl/samtools-index.cwl -rwxr-xr-x root/root 1627 2019-08-17 08:15 ./usr/share/commonwl/samtools-rmdup.cwl -rwxr-xr-x root/root 2834 2019-08-17 08:15 ./usr/share/commonwl/samtools-sort.cwl -rwxr-xr-x root/root 6224 2019-08-17 08:15 ./usr/share/commonwl/samtools-view.cwl drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/doc/samtools/ -rw-r--r-- root/root 828 2018-07-18 08:33 ./usr/share/doc/samtools/AUTHORS -rw-r--r-- root/root 369 2019-08-17 08:15 ./usr/share/doc/samtools/NEWS.Debian.gz -rw-r--r-- root/root 4025 2018-07-18 08:33 ./usr/share/doc/samtools/README -rw-r--r-- root/root 497 2019-08-17 08:15 ./usr/share/doc/samtools/README.Debian -rw-r--r-- root/root 5178 2019-08-17 08:20 ./usr/share/doc/samtools/changelog.Debian.gz -rw-r--r-- root/root 17663 2018-07-18 08:33 ./usr/share/doc/samtools/changelog.gz -rw-r--r-- root/root 3451 2019-08-17 08:20 ./usr/share/doc/samtools/copyright drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/doc/samtools/examples/ -rw-r--r-- root/root 1315 2018-07-18 08:33 ./usr/share/doc/samtools/examples/00README.txt -rw-r--r-- root/root 3225 2018-07-18 08:33 ./usr/share/doc/samtools/examples/ex1.fa -rw-r--r-- root/root 114565 2019-08-17 08:20 ./usr/share/doc/samtools/examples/ex1.sam.gz -rw-r--r-- root/root 98 2018-07-18 08:33 ./usr/share/doc/samtools/examples/toy.fa -rw-r--r-- root/root 786 2018-07-18 08:33 ./usr/share/doc/samtools/examples/toy.sam drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 220 2019-08-17 08:15 ./usr/share/lintian/overrides/samtools drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/man/ drwxr-xr-x root/root 0 2019-08-17 08:20 ./usr/share/man/man1/ -rw-r--r-- root/root 462 2019-08-17 08:20 ./usr/share/man/man1/ace2sam.1.gz -rw-r--r-- root/root 24645 2019-08-17 08:20 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2019-08-17 08:20 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2019-08-17 08:20 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [624 B] Get:5 copy:/<>/apt_archive ./ Packages [690 B] Fetched 2277 B in 0s (150 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:ppc64el t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.29.0 [1279 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8555 kB in 0s (26.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 23445 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up diffstat (1.62-1+b1) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001003-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-3) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 21612 Build-Time: 69 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 24 Job: samtools_1.9-5 Lintian: pass Machine Architecture: amd64 Package: samtools Package-Time: 108 Source-Version: 1.9-5 Space: 21612 Status: successful Version: 1.9-5 -------------------------------------------------------------------------------- Finished at 2019-10-21T20:43:26Z Build needed 00:01:48, 21612k disk space