sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | seer 1.1.4-4 (arm64) Wed, 14 Oct 2020 01:39:00 +0000 | +==============================================================================+ Package: seer Version: 1.1.4-4 Source Version: 1.1.4-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-d560392d-db64-41b4-94fe-dd5dc6a7d4ff' with '<>' I: NOTICE: Log filtering will replace 'build/seer-HBkbPT/resolver-VPm0pe' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-13-0809.57.pdiff [7050 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-13-1411.45.pdiff [20.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-13-2013.49.pdiff [13.0 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-13-0809.57.pdiff [7132 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-13-1411.45.pdiff [48.6 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-13-2013.49.pdiff [12.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-13-2013.49.pdiff [13.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-13-2013.49.pdiff [12.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8247 kB] Fetched 8557 kB in 2s (5414 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'seer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seer.git Please use: git clone https://salsa.debian.org/med-team/seer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 982 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main seer 1.1.4-4 (dsc) [2041 B] Get:2 http://debian.oregonstate.edu/debian unstable/main seer 1.1.4-4 (tar) [972 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main seer 1.1.4-4 (diff) [8232 B] Fetched 982 kB in 0s (20.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/seer-HBkbPT/seer-1.1.4' with '<>' I: NOTICE: Log filtering will replace 'build/seer-HBkbPT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libarmadillo-dev (>= 1:6.700.6+dfsg-1~), libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), libarmadillo-dev (>= 1:6.700.6+dfsg-1~), libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [462 B] Get:5 copy:/<>/apt_archive ./ Packages [551 B] Fetched 1970 B in 0s (79.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarmadillo-dev:arm64 libarmadillo9:arm64 libarpack2:arm64 libarpack2-dev:arm64 libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-dev:arm64 libboost-program-options-dev:arm64 libboost-program-options1.71-dev:arm64 libboost-program-options1.71.0:arm64 libboost1.71-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdlib-data libdlib-dev:arm64 libdlib19:arm64 libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 liblapack-dev:arm64 liblapack3:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev libnsl-dev:arm64 libnsl2 libnsl2:arm64 libnss-nis:arm64 libnss-nisplus:arm64 libperl5.30 libpipeline1 libpng16-16:arm64 libsigsegv2 libsqlite3-0:arm64 libssl1.1 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsuperlu-dev:arm64 libsuperlu5:arm64 libsz2:arm64 libtirpc-common libtirpc-dev libtirpc-dev:arm64 libtirpc3 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libitpp-dev:arm64 liblapack-doc:arm64 libboost-doc:arm64 libboost1.71-doc:arm64 libboost-atomic1.71-dev:arm64 libboost-chrono1.71-dev:arm64 libboost-container1.71-dev:arm64 libboost-context1.71-dev:arm64 libboost-contract1.71-dev:arm64 libboost-coroutine1.71-dev:arm64 libboost-date-time1.71-dev:arm64 libboost-exception1.71-dev:arm64 libboost-fiber1.71-dev:arm64 libboost-filesystem1.71-dev:arm64 libboost-graph1.71-dev:arm64 libboost-graph-parallel1.71-dev:arm64 libboost-iostreams1.71-dev:arm64 libboost-locale1.71-dev:arm64 libboost-log1.71-dev:arm64 libboost-math1.71-dev:arm64 libboost-mpi1.71-dev:arm64 libboost-mpi-python1.71-dev:arm64 libboost-numpy1.71-dev:arm64 libboost-python1.71-dev:arm64 libboost-random1.71-dev:arm64 libboost-regex1.71-dev:arm64 libboost-serialization1.71-dev:arm64 libboost-stacktrace1.71-dev:arm64 libboost-system1.71-dev:arm64 libboost-test1.71-dev:arm64 libboost-thread1.71-dev:arm64 libboost-timer1.71-dev:arm64 libboost-type-erasure1.71-dev:arm64 libboost-wave1.71-dev:arm64 libboost1.71-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 gnupg git bzr krb5-doc krb5-user krb5-doc:arm64 krb5-user:arm64 libhdf5-doc:arm64 libstdc++-10-doc libstdc++-9-doc:arm64 libsuperlu-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:arm64 libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarmadillo-dev:arm64 libarmadillo9:arm64 libarpack2:arm64 libarpack2-dev:arm64 libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-dev:arm64 libboost-program-options-dev:arm64 libboost-program-options1.71-dev:arm64 libboost-program-options1.71.0:arm64 libboost1.71-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdlib-data libdlib-dev:arm64 libdlib19:arm64 libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 liblapack-dev:arm64 liblapack3:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev libnsl-dev:arm64 libnsl2 libnsl2:arm64 libnss-nis:arm64 libnss-nisplus:arm64 libperl5.30 libpipeline1 libpng16-16:arm64 libsigsegv2 libsqlite3-0:arm64 libssl1.1 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsuperlu-dev:arm64 libsuperlu5:arm64 libsz2:arm64 libtirpc-common libtirpc-dev libtirpc-dev:arm64 libtirpc3 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. Need to get 193 MB of archives. After this operation, 760 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.2.0-15 [199 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-18 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.35.1-2 [2809 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-10 [64.6 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-10 [115 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-10 [366 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-10 [156 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-15 [1738 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-15 [8669 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu-base amd64 10.2.0-9cross1 [199 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-aarch64-linux-gnu amd64 10.2.0-9cross1 [7820 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-9cross1 [195 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-1cross2 [1260 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10.2.0-9cross1 [34.5 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10.2.0-9cross1 [89.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10.2.0-9cross1 [23.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10.2.0-9cross1 [9240 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 10.2.0-9cross1 [298 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10.2.0-9cross1 [125 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10.2.0-9cross1 [285 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10.2.0-9cross1 [411 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10.2.0-9cross1 [122 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-arm64-cross all 10.2.0-9cross1 [880 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu amd64 10.2.0-9cross1 [15.6 MB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.7.6-1cross2 [1208 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-1cross2 [2067 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-arm64-cross all 10.2.0-9cross1 [1678 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-aarch64-linux-gnu amd64 10.2.0-9cross1 [8478 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:10.2.0-1 [1176 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.1-1 [1362 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 hdf5-helpers arm64 1.10.6+repack-2 [40.0 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.2.0-15 [34.5 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.17-1 [89.3 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 libnss-nis arm64 3.1-3 [23.9 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libnss-nisplus arm64 1.3-3 [20.5 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-4 [2454 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libsz2 arm64 1.0.4-1 [6736 B] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libaec-dev arm64 1.0.4-1 [18.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 10.2.0-15 [333 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libarpack2 arm64 3.7.0-3 [82.5 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.2.0-15 [450 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 libsuperlu5 arm64 5.2.1+dfsg1-4 [127 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libarmadillo9 arm64 1:9.900.1+dfsg-1 [97.8 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libarpack2-dev arm64 3.7.0-3 [99.5 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-103-1 arm64 1.10.6+repack-2 [1029 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-fortran-102 arm64 1.10.6+repack-2 [101 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-100 arm64 1.10.6+repack-2 [78.3 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-fortran-100 arm64 1.10.6+repack-2 [53.7 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-cpp-103-1 arm64 1.10.6+repack-2 [134 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-cpp-100 arm64 1.10.6+repack-2 [37.2 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.8.14-1 [1168 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.17-1 [109 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.6-1 [71.6 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-10 [64.1 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-10 [116 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1h-1 [1384 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-10 [349 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-10 [149 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.2.6-3 [79.7 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.2.6-3 [193 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-4 [2022 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.0.5-1.1 [132 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.0.5-1.1 [253 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-dev arm64 1.10.6+repack-2 [2543 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libsuperlu-dev arm64 5.2.1+dfsg1-4 [18.4 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libarmadillo-dev arm64 1:9.900.1+dfsg-1 [386 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-18 [354 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.2.0-15 [9440 B] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.2.0-15 [91.6 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.2.0-15 [23.8 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.2.0-15 [126 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.2.0-15 [293 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.2.0-15 [123 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-18 [884 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-18 [1661 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.71-dev arm64 1.71.0-7 [9098 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.71.0.3 [4340 B] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.71.0 arm64 1.71.0-7 [350 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.71-dev arm64 1.71.0-7 [401 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options-dev arm64 1.71.0.3 [4132 B] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libdlib-data all 19.10-3 [63.4 MB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libsqlite3-0 arm64 3.33.0-1 [745 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libdlib19 arm64 19.10-3 [3724 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libdlib-dev arm64 19.10-3 [1701 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libgzstream0 arm64 1.5+dfsg-5 [6664 B] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libgzstream-dev arm64 1.5+dfsg-5 [7008 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 193 MB in 2s (121 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10416 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../006-libperl5.30_5.30.3-4_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.3-4) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.30.3-4_amd64.deb ... Unpacking perl (5.30.3-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:arm64. Preparing to unpack .../009-gcc-10-base_10.2.0-15_arm64.deb ... Unpacking gcc-10-base:arm64 (10.2.0-15) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../010-gcc-9-base_9.3.0-18_arm64.deb ... Unpacking gcc-9-base:arm64 (9.3.0-18) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.2-4_all.deb ... Unpacking automake (1:1.16.2-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../023-binutils-aarch64-linux-gnu_2.35.1-2_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.35.1-2) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../025-libkrb5support0_1.17-10_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-10) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../026-libk5crypto3_1.17-10_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-10) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../027-libkeyutils1_1.6.1-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../028-libssl1.1_1.1.1h-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1h-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../029-libkrb5-3_1.17-10_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-10) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../030-libgssapi-krb5-2_1.17-10_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-10) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../031-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../032-libtirpc3_1.2.6-3_amd64.deb ... Unpacking libtirpc3:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../033-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../034-libtirpc-dev_1.2.6-3_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../035-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../036-libc6-dev_2.31-4_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-4) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../037-libstdc++-10-dev_10.2.0-15_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package g++-10. Preparing to unpack .../038-g++-10_10.2.0-15_amd64.deb ... Unpacking g++-10 (10.2.0-15) ... Selecting previously unselected package g++. Preparing to unpack .../039-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../040-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../041-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../042-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-aarch64-linux-gnu-base:amd64. Preparing to unpack .../043-gcc-10-aarch64-linux-gnu-base_10.2.0-9cross1_amd64.deb ... Unpacking gcc-10-aarch64-linux-gnu-base:amd64 (10.2.0-9cross1) ... Selecting previously unselected package cpp-10-aarch64-linux-gnu. Preparing to unpack .../044-cpp-10-aarch64-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking cpp-10-aarch64-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../045-cpp-aarch64-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../046-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../047-gcc-10-cross-base_10.2.0-9cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.0-9cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../048-libc6-arm64-cross_2.31-1cross2_all.deb ... Unpacking libc6-arm64-cross (2.31-1cross2) ... Selecting previously unselected package libgcc-s1-arm64-cross. Preparing to unpack .../049-libgcc-s1-arm64-cross_10.2.0-9cross1_all.deb ... Unpacking libgcc-s1-arm64-cross (10.2.0-9cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../050-libgomp1-arm64-cross_10.2.0-9cross1_all.deb ... Unpacking libgomp1-arm64-cross (10.2.0-9cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../051-libitm1-arm64-cross_10.2.0-9cross1_all.deb ... Unpacking libitm1-arm64-cross (10.2.0-9cross1) ... Selecting previously unselected package libatomic1-arm64-cross. 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Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../159-libsqlite3-0_3.33.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.33.0-1) ... Selecting previously unselected package libdlib19:arm64. Preparing to unpack .../160-libdlib19_19.10-3_arm64.deb ... Unpacking libdlib19:arm64 (19.10-3) ... Selecting previously unselected package libdlib-dev:arm64. Preparing to unpack .../161-libdlib-dev_19.10-3_arm64.deb ... Unpacking libdlib-dev:arm64 (19.10-3) ... Selecting previously unselected package libgzstream0:arm64. Preparing to unpack .../162-libgzstream0_1.5+dfsg-5_arm64.deb ... Unpacking libgzstream0:arm64 (1.5+dfsg-5) ... Selecting previously unselected package libgzstream-dev:arm64. Preparing to unpack .../163-libgzstream-dev_1.5+dfsg-5_arm64.deb ... Unpacking libgzstream-dev:arm64 (1.5+dfsg-5) ... Selecting previously unselected package sbuild-build-depends-main-dummy:arm64. Preparing to unpack .../164-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.36-3+b1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers:arm64 (1.10.6+repack-2) ... Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.66.1-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1h-1) ... Setting up libtirpc-common (1.2.6-3) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:arm64 (5.8.14-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up binutils-aarch64-linux-gnu (2.35.1-2) ... Setting up file (1:5.38-5) ... Setting up libkrb5support0:amd64 (1.17-10) ... Setting up gcc-10-base:arm64 (10.2.0-15) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.31-1cross2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.17-10) ... Setting up gcc-10-cross-base (10.2.0-9cross1) ... Setting up linux-libc-dev-arm64-cross (5.7.6-1cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libkrb5-3:amd64 (1.17-10) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6) ... Setting up libdlib-data (19.10-3) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.3.0-18) ... Setting up libgcc-s1-arm64-cross (10.2.0-9cross1) ... Setting up gcc-10-aarch64-linux-gnu-base:amd64 (10.2.0-9cross1) ... Setting up libatomic1-arm64-cross (10.2.0-9cross1) ... Setting up liblsan0-arm64-cross (10.2.0-9cross1) ... Setting up libgomp1-arm64-cross (10.2.0-9cross1) ... Setting up libasan6-arm64-cross (10.2.0-9cross1) ... Setting up libtsan0-arm64-cross (10.2.0-9cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.31-1cross2) ... Setting up libstdc++6-arm64-cross (10.2.0-9cross1) ... Setting up perl (5.30.3-4) ... Setting up libgssapi-krb5-2:amd64 (1.17-10) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-aarch64-linux-gnu (10.2.0-9cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-10-dev-arm64-cross (10.2.0-9cross1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:10.2.0-1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libstdc++-10-dev-arm64-cross (10.2.0-9cross1) ... Setting up gcc-10-aarch64-linux-gnu (10.2.0-9cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-10-aarch64-linux-gnu (10.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-4) ... Setting up gcc-aarch64-linux-gnu (4:10.2.0-1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-15) ... Setting up g++-10 (10.2.0-15) ... Setting up libtool (2.4.6-14) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up g++-aarch64-linux-gnu (4:10.2.0-1) ... Setting up build-essential (12.8) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libnss-nis:arm64 (3.1-3) ... Setting up libcrypt1:arm64 (1:4.4.17-1) ... Setting up libgcc-s1:arm64 (10.2.0-15) ... Setting up libnss-nisplus:arm64 (1.3-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.31-4) ... Setting up libcrypt-dev:arm64 (1:4.4.17-1) ... Setting up libstdc++6:arm64 (10.2.0-15) ... Setting up liblsan0:arm64 (10.2.0-15) ... Setting up libitm1:arm64 (10.2.0-15) ... Setting up libtsan0:arm64 (10.2.0-15) ... Setting up libboost-program-options1.71.0:arm64 (1.71.0-7) ... Setting up libkeyutils1:arm64 (1.6.1-2) ... Setting up libssl1.1:arm64 (1.1.1h-1) ... Setting up libsqlite3-0:arm64 (3.33.0-1) ... Setting up debhelper (13.2.1) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-2) ... Setting up libcom-err2:arm64 (1.45.6-1) ... Setting up libgomp1:arm64 (10.2.0-15) ... Setting up libaec0:arm64 (1.0.4-1) ... Setting up libkrb5support0:arm64 (1.17-10) ... Setting up libasan5:arm64 (9.3.0-18) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.0.5-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libatomic1:arm64 (10.2.0-15) ... Setting up libk5crypto3:arm64 (1.17-10) ... Setting up libgfortran5:arm64 (10.2.0-15) ... Setting up libgzstream0:arm64 (1.5+dfsg-5) ... Setting up libubsan1:arm64 (10.2.0-15) ... Setting up libkrb5-3:arm64 (1.17-10) ... Setting up libblas-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.0.4-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up libarpack2:arm64 (3.7.0-3) ... Setting up libsuperlu5:arm64 (5.2.1+dfsg1-4) ... Setting up libgzstream-dev:arm64 (1.5+dfsg-5) ... Setting up libgcc-9-dev:arm64 (9.3.0-18) ... Setting up libdlib19:arm64 (19.10-3) ... Setting up liblapack-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-10) ... Setting up libhdf5-103-1:arm64 (1.10.6+repack-2) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.6+repack-2) ... Setting up libarmadillo9:arm64 (1:9.900.1+dfsg-1) ... Setting up libsuperlu-dev:arm64 (5.2.1+dfsg1-4) ... Setting up libhdf5-hl-100:arm64 (1.10.6+repack-2) ... Setting up libtirpc3:arm64 (1.2.6-3) ... Setting up libarpack2-dev:arm64 (3.7.0-3) ... Setting up libdlib-dev:arm64 (19.10-3) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.6+repack-2) ... Setting up libtirpc-dev:arm64 (1.2.6-3) ... Setting up libhdf5-fortran-102:arm64 (1.10.6+repack-2) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.6+repack-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.31-4) ... Setting up libstdc++-9-dev:arm64 (9.3.0-18) ... Setting up libboost1.71-dev:arm64 (1.71.0-7) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.0.5-1.1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libboost-dev:arm64 (1.71.0.3) ... Setting up libboost-program-options1.71-dev:arm64 (1.71.0-7) ... Setting up libboost-program-options-dev:arm64 (1.71.0.3) ... Setting up libhdf5-dev:arm64 (1.10.6+repack-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libarmadillo-dev:arm64 (1:9.900.1+dfsg-1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-11-amd64 #1 SMP Debian 4.19.146-1 (2020-09-17) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++-10-dev-arm64-cross_10.2.0-9cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-15 libstdc++6-arm64-cross_10.2.0-9cross1 linux-libc-dev_5.8.14-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.0-7 binutils_2.35.1-2 binutils-aarch64-linux-gnu_2.35.1-2 binutils-common_2.35.1-2 binutils-x86-64-linux-gnu_2.35.1-2 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-15 cpp-10-aarch64-linux-gnu_10.2.0-9cross1 cpp-8_8.4.0-4 cpp-aarch64-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-arm64_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3+b1 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.2.0-1 g++-10_10.2.0-15 g++-10-aarch64-linux-gnu_10.2.0-9cross1 g++-aarch64-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.0-15 gcc-10-aarch64-linux-gnu_10.2.0-9cross1 gcc-10-aarch64-linux-gnu-base_10.2.0-9cross1 gcc-10-base_10.2.0-15 gcc-10-cross-base_10.2.0-9cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-18 gcc-aarch64-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libarmadillo-dev_1:9.900.1+dfsg-1 libarmadillo9_1:9.900.1+dfsg-1 libarpack2_3.7.0-3 libarpack2-dev_3.7.0-3 libasan5_9.3.0-18 libasan6_10.2.0-15 libasan6-arm64-cross_10.2.0-9cross1 libatomic1_10.2.0-15 libatomic1-arm64-cross_10.2.0-9cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35.1-2 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3+b1 libboost-dev_1.71.0.3 libboost-program-options-dev_1.71.0.3 libboost-program-options1.71-dev_1.71.0-7 libboost-program-options1.71.0_1.71.0-7 libboost1.71-dev_1.71.0-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-arm64-cross_2.31-1cross2 libc6-dev_2.31-4 libc6-dev-arm64-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-15 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2 libctf0_2.35.1-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdlib-data_19.10-3 libdlib-dev_19.10-3 libdlib19_19.10-3 libdpkg-perl_1.20.5 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3+b1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-15 libgcc-10-dev-arm64-cross_10.2.0-9cross1 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-15 libgcc-s1-arm64-cross_10.2.0-9cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-15 libglib2.0-0_2.66.1-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-15 libgomp1-arm64-cross_10.2.0-9cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libgzstream-dev_1.5+dfsg-5 libgzstream0_1.5+dfsg-5 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-15 libitm1-arm64-cross_10.2.0-9cross1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-15 liblsan0-arm64-cross_10.2.0-9cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 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libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-15 libtsan0-arm64-cross_10.2.0-9cross1 libubsan1_10.2.0-15 libubsan1-arm64-cross_10.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_246.6-1 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.14-1 linux-libc-dev-arm64-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020b-1 ucf_3.0043 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: seer Binary: seer Architecture: any Version: 1.1.4-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/johnlees/seer Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/seer Vcs-Git: https://salsa.debian.org/med-team/seer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libarmadillo-dev (>= 1:6.700.6+dfsg-1~), libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev Package-List: seer deb science optional arch=any Checksums-Sha1: 01aa93df82b6e563f5e06ae47592ae0d98dce2da 972155 seer_1.1.4.orig.tar.gz 969af13a9c9ec27da7a5c2b1a61461d3413ba8d0 8232 seer_1.1.4-4.debian.tar.xz Checksums-Sha256: 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 972155 seer_1.1.4.orig.tar.gz e592aaf14f6a519716444f438ff7d528ee11138e7a9ad13030525ad5172ed2da 8232 seer_1.1.4-4.debian.tar.xz Files: e4b331eaf17819aabc545b032148d8c2 972155 seer_1.1.4.orig.tar.gz ea50e29b4646c7b2f9d5655ddad46104 8232 seer_1.1.4-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9iCzoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFYdA//eplZtCrumPIbT0AUPKxQQUOcPLRvFwhd RbBeygNRRlwkGOuB5OTCQE10RRj/If+zhQ7X+PGFzJKFVXzHvxGBEUNPaBk5Zz6h 3vEcPI2fcy3kApr7pS52O6K7OsJvLGA2YX+STgKqU7UlP1CmJJzRwd+nhq6tvI5p KnmwrC6gbgbLk/KiDVn7/NLBkNMedNbXteg+bSIcttH4c04SD7569K4sRYH18f+Z UFVOVJ7uINQ/1Wvx7jAM9+jIEpHgnUVv5NSJwwBr0zroC+wVBoNyDWd4Zsxd+Snj haOOAeQmokXfoi/VIwEPeHLZEyejiNNK8AlI4UutACIWzfyHX89TTgibX5yTTmJ3 +Pu6pot1Bt8VJgWoTZa4879jk1SfLOZJQADK2QJ4cbtIYuCwjKrYtND6NNOjNa/r K5h4UOFquRJdRmMJso+8D4ySgt9QmfGTT8DCmuzwilsiO9mCgbyBU1jpxjjj5Vfg WRtmmduL1jIg+o3v6QK8YLZzmwZcxOL8TCYe1xoPRDWZvSBUfGuDP4g2OJ4Fl+W8 M7noukp3EYXhkFDbPwCSOeeYNGGZRCP8AaJ9IMqojkMHtpIshD9neadAIbMzPOxD +cFcYlQWBIEN6izVoBaHWRe4UPQBGlXqAcZy+v863y6BGkB7TDQXMEpwsrgKX+Bm YVeGUknNYaM= =uXsW -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.YKNRlAZU/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 16 12:55:22 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seer_1.1.4-4.dsc dpkg-source: info: extracting seer in /<> dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-d560392d-db64-41b4-94fe-dd5dc6a7d4ff SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' cd src && make clean make[2]: Entering directory '/<>/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/<>/src' cd test && make clean make[2]: Entering directory '/<>/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/<>/test' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- LDFLAGS+=-L/usr/lib/aarch64-linux-gnu/hdf5/serial make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc LDFLAGS\+=-L/usr/lib/aarch64-linux-gnu/hdf5/serial make[2]: Entering directory '/<>' cd src && make all make[3]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o seer aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o kmds aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o map_back aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o combineKmers aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o filter_seer make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=/<>/debian/seer/usr make -j1 install DESTDIR=/<>/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/<>/debian/seer/usr make[2]: Entering directory '/<>' cd src && make all make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src' cd src && make install make[3]: Entering directory '/<>/src' install -d /<>/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /<>/debian/seer/usr/bin make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /<>/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /<>/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'seer' in '../seer_1.1.4-4_arm64.deb'. dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-4_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../seer_1.1.4-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-14T01:43:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ seer_1.1.4-4_arm64.changes: --------------------------- Format: 1.8 Date: Tue, 15 Sep 2020 06:05:45 +0200 Source: seer Binary: seer seer-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.1.4-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: seer - genomic sequence element (kmer) enrichment analysis Closes: 970414 Changes: seer (1.1.4-4) unstable; urgency=medium . * Team upload * Fix FTCBFS: Pass hdf5 libdir via LDFLAGS. (Closes: #970414) Checksums-Sha1: 960134c9b7f36ce177dc9809610c499038ebe440 8780236 seer-dbgsym_1.1.4-4_arm64.deb d56b561b64aa07f300cb87f8d9404ebad5e9e8de 6213 seer_1.1.4-4_arm64.buildinfo f8020b830295338099e5b7b6c0bdee1f33c103f5 1152872 seer_1.1.4-4_arm64.deb Checksums-Sha256: 974bd8543047ac7e4dd72608775c0c99bf98ea10fe4d62da49ba84ac56b1573f 8780236 seer-dbgsym_1.1.4-4_arm64.deb 8a886f6af58535f2005672b5141207d9835991c63d6b124d93570e19a4bfe443 6213 seer_1.1.4-4_arm64.buildinfo 29a89a1ba06c10004e1b646c9aab572002f2a4788fdc1dfa22cb41e277deac8d 1152872 seer_1.1.4-4_arm64.deb Files: 16df6956031e511488a66cdba963296a 8780236 debug optional seer-dbgsym_1.1.4-4_arm64.deb 40de90c3f2c859ed14551382122604ed 6213 science optional seer_1.1.4-4_arm64.buildinfo 18e32d053c494274ec0ab506f41c383f 1152872 science optional seer_1.1.4-4_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: seer Binary: seer seer-dbgsym Architecture: arm64 Version: 1.1.4-4 Checksums-Md5: 16df6956031e511488a66cdba963296a 8780236 seer-dbgsym_1.1.4-4_arm64.deb 18e32d053c494274ec0ab506f41c383f 1152872 seer_1.1.4-4_arm64.deb Checksums-Sha1: 960134c9b7f36ce177dc9809610c499038ebe440 8780236 seer-dbgsym_1.1.4-4_arm64.deb f8020b830295338099e5b7b6c0bdee1f33c103f5 1152872 seer_1.1.4-4_arm64.deb Checksums-Sha256: 974bd8543047ac7e4dd72608775c0c99bf98ea10fe4d62da49ba84ac56b1573f 8780236 seer-dbgsym_1.1.4-4_arm64.deb 29a89a1ba06c10004e1b646c9aab572002f2a4788fdc1dfa22cb41e277deac8d 1152872 seer_1.1.4-4_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 14 Oct 2020 01:43:59 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.0-7), binutils (= 2.35.1-2), binutils-common (= 2.35.1-2), binutils-x86-64-linux-gnu (= 2.35.1-2), bsdextrautils (= 2.36-3+b1), bsdutils (= 1:2.36-3+b1), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-15), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-15), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-15), gcc-10-base (= 10.2.0-15), gcc-9-base (= 9.3.0-18), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.68-1), libarmadillo-dev (= 1:9.900.1+dfsg-1), libarmadillo9 (= 1:9.900.1+dfsg-1), libarpack2 (= 3.7.0-3), libarpack2-dev (= 3.7.0-3), libasan5 (= 9.3.0-18), libasan6 (= 10.2.0-15), libatomic1 (= 10.2.0-15), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35.1-2), libblas-dev (= 3.9.0-3), libblas3 (= 3.9.0-3), libblkid1 (= 2.36-3+b1), libboost-dev (= 1.71.0.3), libboost-program-options-dev (= 1.71.0.3), libboost-program-options1.71-dev (= 1.71.0-7), libboost-program-options1.71.0 (= 1.71.0-7), libboost1.71-dev (= 1.71.0-7), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-4), libc-dev-bin (= 2.31-4), libc6 (= 2.31-4), libc6-dev (= 2.31-4), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-15), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-2), libctf0 (= 2.35.1-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.254), libdebhelper-perl (= 13.2.1), libdlib-data (= 19.10-3), libdlib-dev (= 19.10-3), libdlib19 (= 19.10-3), libdpkg-perl (= 1.20.5), libelf1 (= 0.181-1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-15), libgcc-9-dev (= 9.3.0-18), libgcc-s1 (= 10.2.0-15), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.0-15), libglib2.0-0 (= 2.66.1-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-15), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libgzstream-dev (= 1.5+dfsg-5), libgzstream0 (= 1.5+dfsg-5), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-15), libjpeg62-turbo (= 1:2.0.5-1.1), libjpeg62-turbo-dev (= 1:2.0.5-1.1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblapack-dev (= 3.9.0-3), liblapack3 (= 3.9.0-3), liblsan0 (= 10.2.0-15), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3+b1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnss-nis (= 3.1-3), libnss-nisplus (= 1.3-3), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpng16-16 (= 1.6.37-3), libquadmath0 (= 10.2.0-15), libseccomp2 (= 2.4.4-1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36-3+b1), libsqlite3-0 (= 3.33.0-1), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.0-15), libstdc++-9-dev (= 9.3.0-18), libstdc++6 (= 10.2.0-15), libsub-override-perl (= 0.09-2), libsuperlu-dev (= 5.2.1+dfsg1-4), libsuperlu5 (= 5.2.1+dfsg1-4), libsystemd0 (= 246.6-1), libsz2 (= 1.0.4-1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-15), libubsan1 (= 10.2.0-15), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3+b1), libxml2 (= 2.9.10+dfsg-6), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.14-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.30+dfsg-7), util-linux (= 2.36-3+b1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1600142745" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ seer-dbgsym_1.1.4-4_arm64.deb ----------------------------- new Debian package, version 2.0. size 8780236 bytes: control archive=804 bytes. 523 bytes, 12 lines control 612 bytes, 6 lines md5sums Package: seer-dbgsym Source: seer Version: 1.1.4-4 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 9223 Depends: seer (= 1.1.4-4) Section: debug Priority: optional Description: debug symbols for seer Build-Ids: 15ccbe6120bede4ddcad15d15b3598143d3b02df 393f29d63cff01fd637b13d538e713fd24ee92fb 7edf997c8768914039058fdd1634fd4c6e77c390 a7c16bef0a5ddab65da3746908835ca39f1c5a34 dbda04ae44b15f07c58603d9ee08a3726f61e42a drwxr-xr-x root/root 0 2020-09-15 04:05 ./ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/15/ -rw-r--r-- root/root 3492904 2020-09-15 04:05 ./usr/lib/debug/.build-id/15/ccbe6120bede4ddcad15d15b3598143d3b02df.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 558608 2020-09-15 04:05 ./usr/lib/debug/.build-id/39/3f29d63cff01fd637b13d538e713fd24ee92fb.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 2866080 2020-09-15 04:05 ./usr/lib/debug/.build-id/7e/df997c8768914039058fdd1634fd4c6e77c390.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/a7/ -rw-r--r-- root/root 1038672 2020-09-15 04:05 ./usr/lib/debug/.build-id/a7/c16bef0a5ddab65da3746908835ca39f1c5a34.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.build-id/db/ -rw-r--r-- root/root 384184 2020-09-15 04:05 ./usr/lib/debug/.build-id/db/da04ae44b15f07c58603d9ee08a3726f61e42a.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 1083736 2020-09-15 04:05 ./usr/lib/debug/.dwz/aarch64-linux-gnu/seer.debug drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-09-15 04:05 ./usr/share/doc/seer-dbgsym -> seer seer_1.1.4-4_arm64.deb ---------------------- new Debian package, version 2.0. size 1152872 bytes: control archive=2632 bytes. 1420 bytes, 24 lines control 4173 bytes, 60 lines md5sums Package: seer Version: 1.1.4-4 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 4817 Depends: libarmadillo9 (>= 1:9.900.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.71.0, libc6 (>= 2.29), libgcc-s1 (>= 4.5), libgzstream0 (>= 1.5+dfsg), libhdf5-103-1, libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), libtext-csv-perl Suggests: fsm-lite Section: science Priority: optional Homepage: https://github.com/johnlees/seer Description: genomic sequence element (kmer) enrichment analysis Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics. drwxr-xr-x root/root 0 2020-09-15 04:05 ./ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/bin/ -rwxr-xr-x root/root 4597 2020-09-15 04:05 ./usr/bin/R_mds -rwxr-xr-x root/root 3794 2020-09-15 04:05 ./usr/bin/blast_top_hits -rwxr-xr-x root/root 2152 2020-09-15 04:05 ./usr/bin/blastn_to_phandango -rwxr-xr-x root/root 137480 2020-09-15 04:05 ./usr/bin/combineKmers -rwxr-xr-x root/root 88328 2020-09-15 04:05 ./usr/bin/filter_seer -rwxr-xr-x root/root 1869 2020-09-15 04:05 ./usr/bin/hits_to_fastq -rwxr-xr-x root/root 511272 2020-09-15 04:05 ./usr/bin/kmds -rwxr-xr-x root/root 207128 2020-09-15 04:05 ./usr/bin/map_back -rwxr-xr-x root/root 3200 2020-09-15 04:05 ./usr/bin/mapping_to_phandango -rwxr-xr-x root/root 1208 2020-09-15 04:05 ./usr/bin/mash2matrix -rwxr-xr-x root/root 2295 2020-09-15 04:05 ./usr/bin/reformat_output -rwxr-xr-x root/root 757088 2020-09-15 04:05 ./usr/bin/seer drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/doc/seer/ -rw-r--r-- root/root 684 2020-09-15 04:05 ./usr/share/doc/seer/README.Debian -rw-r--r-- root/root 328 2020-09-15 04:05 ./usr/share/doc/seer/README.source -rw-r--r-- root/root 278 2020-09-15 04:05 ./usr/share/doc/seer/README.test -rw-r--r-- root/root 1013 2020-09-15 04:05 ./usr/share/doc/seer/changelog.Debian.gz -rw-r--r-- root/root 1009 2020-09-15 04:05 ./usr/share/doc/seer/copyright drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/doc/seer/examples/ -rw-r--r-- root/root 2168438 2017-06-20 09:43 ./usr/share/doc/seer/examples/6259_5_16.fa -rw-r--r-- root/root 121 2017-06-20 09:43 ./usr/share/doc/seer/examples/Makefile -rw-r--r-- root/root 196442 2017-06-20 09:43 ./usr/share/doc/seer/examples/all_structure_new -rw-r--r-- root/root 29617 2017-06-20 09:43 ./usr/share/doc/seer/examples/all_structure_new.samples -rw-r--r-- root/root 23 2017-06-20 09:43 ./usr/share/doc/seer/examples/assembly_locations.txt -rw-r--r-- root/root 3011 2017-06-20 09:43 ./usr/share/doc/seer/examples/covariates.txt -rw-r--r-- root/root 65372 2017-06-20 09:43 ./usr/share/doc/seer/examples/example.pheno -rw-r--r-- root/root 63448 2020-09-15 04:05 ./usr/share/doc/seer/examples/example_kmers.gz -rwxr-xr-x root/root 6542 2017-06-20 09:43 ./usr/share/doc/seer/examples/example_wrapper.py -rw-r--r-- root/root 18732 2017-06-20 09:43 ./usr/share/doc/seer/examples/filter_in.txt -rwxr-xr-x root/root 1115 2017-06-20 09:43 ./usr/share/doc/seer/examples/generate_test.pl -rw-r--r-- root/root 233 2017-06-20 09:43 ./usr/share/doc/seer/examples/map_in.txt -rwxr-xr-x root/root 2031 2017-06-20 09:43 ./usr/share/doc/seer/examples/run_test.pl -rw-r--r-- root/root 4530 2017-06-20 09:43 ./usr/share/doc/seer/examples/subset.cont.pheno -rw-r--r-- root/root 4238 2017-06-20 09:43 ./usr/share/doc/seer/examples/subset.pheno -rw-r--r-- root/root 168 2017-06-20 09:43 ./usr/share/doc/seer/examples/test1.e.txt -rw-r--r-- root/root 63 2017-06-20 09:43 ./usr/share/doc/seer/examples/test1.o.txt -rw-r--r-- root/root 171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test2.e.txt -rw-r--r-- root/root 18732 2017-06-20 09:43 ./usr/share/doc/seer/examples/test2.o.txt -rw-r--r-- root/root 170 2017-06-20 09:43 ./usr/share/doc/seer/examples/test3.e.txt -rw-r--r-- root/root 496392 2017-06-20 09:43 ./usr/share/doc/seer/examples/test3.o.txt -rw-r--r-- root/root 174 2017-06-20 09:43 ./usr/share/doc/seer/examples/test4.e.txt -rw-r--r-- root/root 9798 2017-06-20 09:43 ./usr/share/doc/seer/examples/test4.o.txt -rw-r--r-- root/root 171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test5.e.txt -rw-r--r-- root/root 24941 2017-06-20 09:43 ./usr/share/doc/seer/examples/test5.o.txt -rw-r--r-- root/root 171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test6.e.txt -rw-r--r-- root/root 24672 2017-06-20 09:43 ./usr/share/doc/seer/examples/test6.o.txt -rw-r--r-- root/root 55 2017-06-20 09:43 ./usr/share/doc/seer/examples/test7.e.txt -rw-r--r-- root/root 15565 2017-06-20 09:43 ./usr/share/doc/seer/examples/test7.o.txt -rw-r--r-- root/root 121 2017-06-20 09:43 ./usr/share/doc/seer/examples/test8.e.txt -rw-r--r-- root/root 62 2017-06-20 09:43 ./usr/share/doc/seer/examples/test8.o.txt -rw-r--r-- root/root 1803 2020-09-15 04:05 ./usr/share/doc/seer/run-unit-test drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/man/ drwxr-xr-x root/root 0 2020-09-15 04:05 ./usr/share/man/man1/ -rw-r--r-- root/root 506 2020-09-15 04:05 ./usr/share/man/man1/R_mds.1.gz -rw-r--r-- root/root 501 2020-09-15 04:05 ./usr/share/man/man1/blast_top_hits.1.gz -rw-r--r-- root/root 461 2020-09-15 04:05 ./usr/share/man/man1/combineKmers.1.gz -rw-r--r-- root/root 543 2020-09-15 04:05 ./usr/share/man/man1/filter_seer.1.gz -rw-r--r-- root/root 408 2020-09-15 04:05 ./usr/share/man/man1/hits_to_fastq.1.gz -rw-r--r-- root/root 906 2020-09-15 04:05 ./usr/share/man/man1/kmds.1.gz -rw-r--r-- root/root 458 2020-09-15 04:05 ./usr/share/man/man1/map_back.1.gz -rw-r--r-- root/root 432 2020-09-15 04:05 ./usr/share/man/man1/mapping_to_phandango.1.gz -rw-r--r-- root/root 466 2020-09-15 04:05 ./usr/share/man/man1/mash2matrix.1.gz -rw-r--r-- root/root 422 2020-09-15 04:05 ./usr/share/man/man1/reformat_output.1.gz -rw-r--r-- root/root 995 2020-09-15 04:05 ./usr/share/man/man1/seer.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [593 B] Get:5 copy:/<>/apt_archive ./ Packages [680 B] Fetched 2236 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 7513 kB of archives. After this operation, 21.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b5 [38.4 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.24-1 [128 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.07-3+b5 [22.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:38 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unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1 [173 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b6 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2 [45.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1 [98.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b7 [8696 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1 [12.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010006-1 [339 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.97.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7513 kB in 0s (27.0 MB/s) Selecting previously unselected package readline-common. (Reading database ... 38847 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package gpg. 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Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.97.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 158240 Build-Time: 258 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 32 Job: seer_1.1.4-4 Lintian: pass Machine Architecture: amd64 Package: seer Package-Time: 299 Source-Version: 1.1.4-4 Space: 158240 Status: successful Version: 1.1.4-4 -------------------------------------------------------------------------------- Finished at 2020-10-14T01:43:59Z Build needed 00:04:59, 158240k disk space