sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | segemehl 0.3.4-1 (arm64) Mon, 08 Jul 2019 06:02:57 +0000 | +==============================================================================+ Package: segemehl Version: 0.3.4-1 Source Version: 0.3.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-6b2ad224-be92-4d1e-9abd-520711725876' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-07-1410.27.pdiff [75.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-07-2020.35.pdiff [25.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-08-0217.07.pdiff [21.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-07-1410.27.pdiff [72.8 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-07-2020.35.pdiff [41.4 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-08-0217.07.pdiff [43.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-08-0217.07.pdiff [21.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-08-0217.07.pdiff [43.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8123 kB] Fetched 8608 kB in 2s (3885 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpcre2-8-0 The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libgnutls30 libselinux1 libsemanage-common libsemanage1 libsepol1 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 6276 kB of archives. After this operation, 705 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgnutls30 amd64 3.6.8-2 [1135 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-8-0 amd64 10.32-5 [213 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 2.9-2 [87.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libsepol1 amd64 2.9-2 [265 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsemanage-common all 2.9-2 [20.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libsemanage1 amd64 2.9-2 [96.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.32.51.20190707-1 [57.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.32.51.20190707-1 [1866 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.32.51.20190707-1 [467 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.32.51.20190707-1 [2068 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6276 kB in 0s (49.9 MB/s) (Reading database ... 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Unpacking libbinutils:amd64 (2.32.51.20190707-1) over (2.31.1-16) ... Preparing to unpack .../binutils-common_2.32.51.20190707-1_amd64.deb ... Unpacking binutils-common:amd64 (2.32.51.20190707-1) over (2.31.1-16) ... Setting up binutils-common:amd64 (2.32.51.20190707-1) ... Setting up libbinutils:amd64 (2.32.51.20190707-1) ... Setting up binutils-x86-64-linux-gnu (2.32.51.20190707-1) ... Setting up binutils (2.32.51.20190707-1) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'segemehl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/segemehl.git Please use: git clone https://salsa.debian.org/med-team/segemehl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (dsc) [2000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (tar) [244 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (diff) [5536 B] Fetched 252 kB in 0s (5179 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/segemehl-YOf8iU/segemehl-0.3.4' with '<>' I: NOTICE: Log filtering will replace 'build/segemehl-YOf8iU' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-hzNXKr/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-hzNXKr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hzNXKr/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-hzNXKr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hzNXKr/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-hzNXKr/apt_archive ./ Packages [451 B] Fetched 1770 B in 0s (95.3 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 41.9 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hzNXKr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190707-1 [2960 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6241 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross2 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-7cross1 [34.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-7cross1 [66.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-7cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-7cross1 [8624 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-7cross1 [325 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-7cross1 [322 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-7cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-7cross1 [255 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-7cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-7cross1 [835 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6677 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.28-2cross2 [1225 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross2 [2323 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-7cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6813 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.9 MB in 1s (57.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11961 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../06-binutils-aarch64-linux-gnu_2.32.51.20190707-1_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.32.51.20190707-1) ... Selecting previously unselected package gcc-8-aarch64-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-aarch64-linux-gnu-base_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-7cross1) ... Selecting previously unselected package cpp-8-aarch64-linux-gnu. Preparing to unpack .../08-cpp-8-aarch64-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking cpp-8-aarch64-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.3.0-7cross1_all.deb ... Unpacking gcc-8-cross-base (8.3.0-7cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../12-libc6-arm64-cross_2.28-10cross2_all.deb ... Unpacking libc6-arm64-cross (2.28-10cross2) ... Selecting previously unselected package libgcc1-arm64-cross. Preparing to unpack .../13-libgcc1-arm64-cross_1%3a8.3.0-7cross1_all.deb ... Unpacking libgcc1-arm64-cross (1:8.3.0-7cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../14-libgomp1-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libgomp1-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../15-libitm1-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libitm1-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libatomic1-arm64-cross. Preparing to unpack .../16-libatomic1-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libatomic1-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libstdc++6-arm64-cross. Preparing to unpack .../17-libstdc++6-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++6-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libasan5-arm64-cross. Preparing to unpack .../18-libasan5-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libasan5-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package liblsan0-arm64-cross. Preparing to unpack .../19-liblsan0-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking liblsan0-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libtsan0-arm64-cross. Preparing to unpack .../20-libtsan0-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libtsan0-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libubsan1-arm64-cross. Preparing to unpack .../21-libubsan1-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libubsan1-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package libgcc-8-dev-arm64-cross. Preparing to unpack .../22-libgcc-8-dev-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libgcc-8-dev-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package gcc-8-aarch64-linux-gnu. Preparing to unpack .../23-gcc-8-aarch64-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-aarch64-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../25-linux-libc-dev-arm64-cross_4.19.28-2cross2_all.deb ... Unpacking linux-libc-dev-arm64-cross (4.19.28-2cross2) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../26-libc6-dev-arm64-cross_2.28-10cross2_all.deb ... Unpacking libc6-dev-arm64-cross (2.28-10cross2) ... Selecting previously unselected package libstdc++-8-dev-arm64-cross. Preparing to unpack .../27-libstdc++-8-dev-arm64-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++-8-dev-arm64-cross (8.3.0-7cross1) ... Selecting previously unselected package g++-8-aarch64-linux-gnu. Preparing to unpack .../28-g++-8-aarch64-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking g++-8-aarch64-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../30-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../31-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../32-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../33-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../34-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../35-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../36-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../37-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../38-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../39-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../40-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../41-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../42-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../43-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../44-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../45-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../46-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190707-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross2) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libitm1-arm64-cross (8.3.0-7cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-7cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-7cross1) ... Setting up libgomp1-arm64-cross (8.3.0-7cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross2) ... Setting up libstdc++6-arm64-cross (8.3.0-7cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-7cross1) ... Setting up libubsan1-arm64-cross (8.3.0-7cross1) ... Setting up libtsan0-arm64-cross (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-7cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-7cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-hzNXKr/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-hzNXKr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hzNXKr/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hzNXKr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hzNXKr/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-hzNXKr/apt_archive ./ Packages [570 B] Fetched 2017 B in 0s (100 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-hzNXKr/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15244 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-segemehl-dummy' in '/<>/resolver-hzNXKr/apt_archive/sbuild-build-depends-segemehl-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-segemehl-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-hzNXKr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hzNXKr/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hzNXKr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hzNXKr/apt_archive ./ Sources [664 B] Get:5 copy:/<>/resolver-hzNXKr/apt_archive ./ Packages [745 B] Fetched 2372 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install segemehl build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libbz2-1.0:arm64 libc6:arm64 libc6-dev:arm64 libcom-err2:arm64 libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdeflate0:arm64 libelf1 libffi6:arm64 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libidn2-0:arm64 libitm1:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblsan0:arm64 liblzma-dev:arm64 liblzma5:arm64 libmonkey-patch-perl libncurses-dev:arm64 libncurses6 libncurses6:arm64 libncursesw6:arm64 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-delete-perl libsub-identify-perl libsuper-perl libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libunistring2:arm64 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 rng-tools:arm64 gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 ncurses-doc:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:arm64 krb5-locales:arm64 libgpm2 libgpm2:arm64 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libbz2-1.0:arm64 libc6:arm64 libc6-dev:arm64 libcom-err2:arm64 libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdeflate0:arm64 libelf1 libffi6:arm64 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libidn2-0:arm64 libitm1:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblsan0:arm64 liblzma-dev:arm64 liblzma5:arm64 libmonkey-patch-perl libncurses-dev:arm64 libncurses6 libncurses6:arm64 libncursesw6:arm64 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-delete-perl libsub-identify-perl libsuper-perl libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libunistring2:arm64 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf sbuild-build-depends-segemehl-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After this operation, 123 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hzNXKr/apt_archive ./ sbuild-build-depends-segemehl-dummy 0.invalid.0 [904 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-delete-perl all 1.00002-2 [7516 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b1 [12.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsuper-perl all 1.20141117-1 [10.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libmonkey-patch-perl all 0.03-2 [11.4 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.2.0-1 [20.6 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.2.0-1 [13.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190706-1 [80.2 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-2 [1259 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-7 [191 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-7 [34.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-7 [363 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-7 [327 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-7 [8804 B] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.6-9.1 [45.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.37-5 [1165 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.2-1 [69.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.1.2+dfsg-4 [226 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle6 arm64 3.4.1-1 [225 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed4 arm64 3.4.1-1 [138 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-1 [363 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.0.5-1 [75.4 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main arm64 libffi6 arm64 3.2.1-9 [19.3 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.15-2 [302 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.13-3 [47.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.6.8-2 [1072 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1c-1 [1376 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.6 [622 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1 [69.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1 [105 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3 [216 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.37.0-1 [80.1 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1 [89.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.35-1 [68.4 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.4-5 [487 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.64.0-4 [310 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-7 [67.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-7 [24.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-7 [118 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-7 [262 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-7 [111 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-7 [829 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1 [149 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libhts2 arm64 1.9-11 [277 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.4-1 [209 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.9-11 [4338 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libtinfo6 arm64 6.1+20181013-2 [320 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libncurses6 arm64 6.1+20181013-2 [92.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 libncursesw6 arm64 6.1+20181013-2 [120 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libncurses-dev arm64 6.1+20181013-2 [324 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-7 [1501 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.7 MB in 1s (51.1 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up libsub-delete-perl (1.00002-2) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libsuper-perl (1.20141117-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190706-1) ... Setting up groff-base (1.22.4-3) ... Setting up libmonkey-patch-perl (0.03-2) ... 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Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190707-1 dpkg-dev_1.19.7 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-arm64-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-arm64-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-5 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190707-1 binutils-aarch64-linux-gnu_2.32.51.20190707-1 binutils-common_2.32.51.20190707-1 binutils-x86-64-linux-gnu_2.32.51.20190707-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 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libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-5 linux-libc-dev-arm64-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-4 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-segemehl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 21:54:08 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./segemehl_0.3.4-1.dsc dpkg-source: info: extracting segemehl in /<> dpkg-source: info: unpacking segemehl_0.3.4.orig.tar.xz dpkg-source: info: unpacking segemehl_0.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-6b2ad224-be92-4d1e-9abd-520711725876 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package segemehl dpkg-buildpackage: info: source version 0.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' Cleaning... rm -f -r build segemehl haarz make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- all make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc all make[2]: Entering directory '/<>' Building... library for source build/matealign.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/matealign.o libs/matealign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: libs/matealign.c: In function 'bl_matealign': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/matealign.c:313:15: note: in expansion of macro 'FREEMEMORY' if(npos[0]) FREEMEMORY(NULL, spos[0]); ^~~~~~~~~~ libs/matealign.c:313:3: note: some parts of macro expansion are not guarded by this 'if' clause if(npos[0]) FREEMEMORY(NULL, spos[0]); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/matealign.c:314:15: note: in expansion of macro 'FREEMEMORY' if(npos[1]) FREEMEMORY(NULL, spos[1]); ^~~~~~~~~~ libs/matealign.c:314:3: note: some parts of macro expansion are not guarded by this 'if' clause if(npos[1]) FREEMEMORY(NULL, spos[1]); ^~ Building... library for source build/alignment.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/alignment.o libs/alignment.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/alignment.c:38: libs/alignment.c: In function 'wrapAlignment': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/alignment.c:97:18: note: in expansion of macro 'FREEMEMORY' if(al->rmvseq) FREEMEMORY(NULL, al->v); ^~~~~~~~~~ libs/alignment.c:97:3: note: some parts of macro expansion are not guarded by this 'if' clause if(al->rmvseq) FREEMEMORY(NULL, al->v); ^~ In file included from include/mathematics.h:117, from libs/alignment.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/alignment.c:98:18: note: in expansion of macro 'FREEMEMORY' if(al->rmuseq) FREEMEMORY(NULL, al->u); ^~~~~~~~~~ libs/alignment.c:98:3: note: some parts of macro expansion are not guarded by this 'if' clause if(al->rmuseq) FREEMEMORY(NULL, al->u); ^~ Building... library for source build/nw.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/nw.o libs/nw.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/mappingqual.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mappingqual.o libs/mappingqual.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/mapfrag.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mapfrag.o libs/mapfrag.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/filebuffer.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/filebuffer.o libs/filebuffer.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/multicharseq.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/multicharseq.o libs/multicharseq.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: libs/multicharseq.c: In function 'destructMultiCharSeq': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:212:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->markpos); ^~~~~~~~~~ libs/multicharseq.c:211:2: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->markpos != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:214:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->map); ^~~~~~~~~~ libs/multicharseq.c:213:2: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->map != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:216:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->ref); ^~~~~~~~~~ libs/multicharseq.c:215:5: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->ref != NULL) ^~ Building... library for source build/mathematics.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mathematics.o libs/mathematics.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/mathematics.c:38: libs/mathematics.c: In function 'destructVector': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/mathematics.c:251:23: note: in expansion of macro 'FREEMEMORY' if (v->elements) FREEMEMORY(space, v->elements); ^~~~~~~~~~ libs/mathematics.c:251:6: note: some parts of macro expansion are not guarded by this 'if' clause if (v->elements) FREEMEMORY(space, v->elements); ^~ Building... library for source build/manopt.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manopt.o libs/manopt.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/haarz.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/haarz.o libs/haarz.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/intervaltree.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/intervaltree.o libs/intervaltree.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/intervaltree.c:27: libs/intervaltree.c: In function 'bl_intervaltreeDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/intervaltree.c:443:19: note: in expansion of macro 'FREEMEMORY' if(root->ncoll) FREEMEMORY(NULL, root->collisions); ^~~~~~~~~~ libs/intervaltree.c:443:3: note: some parts of macro expansion are not guarded by this 'if' clause if(root->ncoll) FREEMEMORY(NULL, root->collisions); ^~ Building... library for source build/bitvectoralg.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitvectoralg.o libs/bitvectoralg.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/iupac.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/iupac.o libs/iupac.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/splitalign.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/splitalign.o libs/splitalign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function 'bl_fixSplitAlignHoffmann': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1323:25: note: in expansion of macro 'FREEMEMORY' if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1323:7: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1324:25: note: in expansion of macro 'FREEMEMORY' if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1324:7: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1325:26: note: in expansion of macro 'FREEMEMORY' if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1325:7: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1326:26: note: in expansion of macro 'FREEMEMORY' if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1326:7: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function 'bl_fixSplitAlignBrendel': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1565:27: note: in expansion of macro 'FREEMEMORY' if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1565:9: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1566:27: note: in expansion of macro 'FREEMEMORY' if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1566:9: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1567:28: note: in expansion of macro 'FREEMEMORY' if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1567:9: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1568:28: note: in expansion of macro 'FREEMEMORY' if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1568:9: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~ Building... library for source build/fileBins.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileBins.o libs/fileBins.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from libs/fileBins.c:51: libs/fileBins.c: In function 'bl_fileBinsSortLine': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/fileBins.c:901:18: note: in expansion of macro 'FREEMEMORY' if(fileSort) FREEMEMORY(space, line); ^~~~~~~~~~ libs/fileBins.c:901:5: note: some parts of macro expansion are not guarded by this 'if' clause if(fileSort) FREEMEMORY(space, line); ^~ Building... library for source build/sufarray.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sufarray.o libs/sufarray.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: libs/sufarray.c: In function 'destructSufArr': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:613:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->lcpctab); ^~~~~~~~~~ libs/sufarray.c:612:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->lcpctab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:615:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->inv_suftab); ^~~~~~~~~~ libs/sufarray.c:614:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->inv_suftab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:619:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->idvtab); ^~~~~~~~~~ libs/sufarray.c:618:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->idvtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:624:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->suflink); ^~~~~~~~~~ libs/sufarray.c:620:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->suflink != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:627:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->chldtab); ^~~~~~~~~~ libs/sufarray.c:626:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->chldtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:629:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->mdfive); ^~~~~~~~~~ libs/sufarray.c:628:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->mdfive) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:631:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->llvtab); ^~~~~~~~~~ libs/sufarray.c:630:3: note: some parts of macro expansion are not guarded by this 'if' clause if(arr->llvtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:636:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->id); ^~~~~~~~~~ libs/sufarray.c:632:3: note: some parts of macro expansion are not guarded by this 'if' clause if(arr->id != NULL) ^~ Building... library for source build/gzip.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzip.o libs/gzip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/info.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/info.o libs/info.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found libs/info.c: In function 'timestr_r': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c: In function 'infomsg': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c: In function 'nfolevel': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/brendel.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/brendel.o libs/brendel.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/manout.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manout.o libs/manout.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/samio.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samio.o libs/samio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function 'bl_samDestructTag': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:102:15: note: in expansion of macro 'FREEMEMORY' if(kv->tag) FREEMEMORY(NULL, kv->tag); ^~~~~~~~~~ libs/samio.c:102:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->tag) FREEMEMORY(NULL, kv->tag); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:103:15: note: in expansion of macro 'FREEMEMORY' if(kv->val) FREEMEMORY(NULL, kv->val); ^~~~~~~~~~ libs/samio.c:103:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->val) FREEMEMORY(NULL, kv->val); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:104:16: note: in expansion of macro 'FREEMEMORY' if(kv->type) FREEMEMORY(NULL, kv->type); ^~~~~~~~~~ libs/samio.c:104:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->type) FREEMEMORY(NULL, kv->type); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:105:15: note: in expansion of macro 'FREEMEMORY' if(kv->key) FREEMEMORY(NULL, kv->key); ^~~~~~~~~~ libs/samio.c:105:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->key) FREEMEMORY(NULL, kv->key); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function 'bl_samDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:112:21: note: in expansion of macro 'FREEMEMORY' if(samrec->qname) FREEMEMORY(NULL, samrec->qname); ^~~~~~~~~~ libs/samio.c:112:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->qname) FREEMEMORY(NULL, samrec->qname); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:113:21: note: in expansion of macro 'FREEMEMORY' if(samrec->rname) FREEMEMORY(NULL, samrec->rname); ^~~~~~~~~~ libs/samio.c:113:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->rname) FREEMEMORY(NULL, samrec->rname); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:114:21: note: in expansion of macro 'FREEMEMORY' if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); ^~~~~~~~~~ libs/samio.c:114:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:115:21: note: in expansion of macro 'FREEMEMORY' if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); ^~~~~~~~~~ libs/samio.c:115:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:116:21: note: in expansion of macro 'FREEMEMORY' if(samrec->seq) FREEMEMORY(NULL, samrec->seq); ^~~~~~~~~~ libs/samio.c:116:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->seq) FREEMEMORY(NULL, samrec->seq); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:117:21: note: in expansion of macro 'FREEMEMORY' if(samrec->qual) FREEMEMORY(NULL, samrec->qual); ^~~~~~~~~~ libs/samio.c:117:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->qual) FREEMEMORY(NULL, samrec->qual); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:121:20: note: in expansion of macro 'FREEMEMORY' if(samrec->tags) FREEMEMORY(NULL, samrec->tags); ^~~~~~~~~~ libs/samio.c:121:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->tags) FREEMEMORY(NULL, samrec->tags); ^~ Building... library for source build/stringutils.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stringutils.o libs/stringutils.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/stringutils.c:39: libs/stringutils.c: In function 'destructStringset': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/stringutils.c:274:9: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, s->strings[i].str); ^~~~~~~~~~ libs/stringutils.c:273:7: note: some parts of macro expansion are not guarded by this 'if' clause if(s->strings[i].str != NULL) ^~ Building... library for source build/charsequence.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/charsequence.o libs/charsequence.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from libs/charsequence.c:26: libs/charsequence.c: In function 'destructSequence': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:467:4: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->sequence); ^~~~~~~~~~ libs/charsequence.c:466:3: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->sequence != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:470:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->alphabetname); ^~~~~~~~~~ libs/charsequence.c:469:2: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->alphabetname != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:472:2: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->url); ^~~~~~~~~~ libs/charsequence.c:471:5: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->url != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:474:2: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->info); ^~~~~~~~~~ libs/charsequence.c:473:5: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->info != NULL) ^~ Building... library for source build/match.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/match.o libs/match.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/sort.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sort.o libs/sort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/radixsort.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/radixsort.o libs/radixsort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/pigeon.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/pigeon.o libs/pigeon.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/segemehl.h:44, from libs/pigeon.c:35: libs/pigeon.c: In function 'pigeon': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/pigeon.c:352:13: note: in expansion of macro 'FREEMEMORY' if(check) FREEMEMORY(space, check); ^~~~~~~~~~ libs/pigeon.c:352:3: note: some parts of macro expansion are not guarded by this 'if' clause if(check) FREEMEMORY(space, check); ^~ Building... library for source build/junctions.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/junctions.o libs/junctions.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/memory.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/memory.o libs/memory.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/segemehl.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl.o libs/segemehl.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bedfiles.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bedfiles.o libs/bedfiles.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/container.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/container.o libs/container.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/portable_endian.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/portable_endian.o libs/portable_endian.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/gzidx.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzidx.o libs/gzidx.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bgzip.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bgzip.o libs/bgzip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/karlin.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/karlin.o libs/karlin.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vtprogressbar.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vtprogressbar.o libs/vtprogressbar.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/kdchain.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdchain.o libs/kdchain.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/fileio.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileio.o libs/fileio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/sw.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sw.o libs/sw.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/samheader.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samheader.o libs/samheader.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bitArray.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitArray.o libs/bitArray.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/segemehl_helper.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl_helper.o libs/segemehl_helper.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/aluruSort.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/aluruSort.o libs/aluruSort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vqueue.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vqueue.o libs/vqueue.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bamio.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bamio.o libs/bamio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from include/bamio.h:21, from libs/bamio.c:32: libs/bamio.c: In function 'bl_bamCrossSectionDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/bamio.c:468:20: note: in expansion of macro 'FREEMEMORY' if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); ^~~~~~~~~~ libs/bamio.c:468:5: note: some parts of macro expansion are not guarded by this 'if' clause if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); ^~ Building... library for source build/stack.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stack.o libs/stack.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/kdseed.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdseed.o libs/kdseed.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/merge.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/merge.o libs/merge.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/merge.c:34: libs/merge.c: In function 'se_mergeWorker': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/merge.c:1096:20: note: in expansion of macro 'FREEMEMORY' if(curkey) FREEMEMORY(NULL, curkey); ^~~~~~~~~~ libs/merge.c:1096:9: note: some parts of macro expansion are not guarded by this 'if' clause if(curkey) FREEMEMORY(NULL, curkey); ^~ In file included from include/stringutils.h:27, from libs/merge.c:34: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/merge.c:1216:26: note: in expansion of macro 'FREEMEMORY' if(!reads && curkey) FREEMEMORY(NULL, curkey); ^~~~~~~~~~ libs/merge.c:1216:5: note: some parts of macro expansion are not guarded by this 'if' clause if(!reads && curkey) FREEMEMORY(NULL, curkey); ^~ Building... library for source build/debug.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/debug.o libs/debug.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/seqclip.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/seqclip.o libs/seqclip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/sw.h:38, from libs/seqclip.c:44: libs/seqclip.c: In function 'bl_Find3PrimeGreedy': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/seqclip.c:529:9: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, adapter); ^~~~~~~~~~ libs/seqclip.c:528:7: note: some parts of macro expansion are not guarded by this 'if' clause if(adapter) ^~ Building... library for source build/locus.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/locus.o libs/locus.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bitVector.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitVector.o libs/bitVector.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/biofiles.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/biofiles.o libs/biofiles.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/annotation.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/annotation.o libs/annotation.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationitemDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:149:23: note: in expansion of macro 'FREEMEMORY' if(item->chromname) FREEMEMORY(space, item->chromname); ^~~~~~~~~~ libs/annotation.c:149:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->chromname) FREEMEMORY(space, item->chromname); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:150:18: note: in expansion of macro 'FREEMEMORY' if(item->name) FREEMEMORY(space, item->name); ^~~~~~~~~~ libs/annotation.c:150:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->name) FREEMEMORY(space, item->name); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:151:21: note: in expansion of macro 'FREEMEMORY' if(item->itemRgb) FREEMEMORY(space, item->itemRgb); ^~~~~~~~~~ libs/annotation.c:151:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->itemRgb) FREEMEMORY(space, item->itemRgb); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:152:24: note: in expansion of macro 'FREEMEMORY' if(item->blockSizes) FREEMEMORY(space, item->blockSizes); ^~~~~~~~~~ libs/annotation.c:152:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockSizes) FREEMEMORY(space, item->blockSizes); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:153:25: note: in expansion of macro 'FREEMEMORY' if(item->blockStarts) FREEMEMORY(space, item->blockStarts); ^~~~~~~~~~ libs/annotation.c:153:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockStarts) FREEMEMORY(space, item->blockStarts); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:154:26: note: in expansion of macro 'FREEMEMORY' if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); ^~~~~~~~~~ libs/annotation.c:154:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:155:26: note: in expansion of macro 'FREEMEMORY' if(item->blockStrands) FREEMEMORY(space, item->blockStrands); ^~~~~~~~~~ libs/annotation.c:155:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockStrands) FREEMEMORY(space, item->blockStrands); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:156:20: note: in expansion of macro 'FREEMEMORY' if(item->source) FREEMEMORY(space, item->source); ^~~~~~~~~~ libs/annotation.c:156:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->source) FREEMEMORY(space, item->source); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationtrackDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:409:24: note: in expansion of macro 'FREEMEMORY' if(track->trackname) FREEMEMORY(space, track->trackname); ^~~~~~~~~~ libs/annotation.c:409:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->trackname) FREEMEMORY(space, track->trackname); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:410:23: note: in expansion of macro 'FREEMEMORY' if(track->filename) FREEMEMORY(space, track->filename); ^~~~~~~~~~ libs/annotation.c:410:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->filename) FREEMEMORY(space, track->filename); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:411:26: note: in expansion of macro 'FREEMEMORY' if(track->description) FREEMEMORY(space, track->description); ^~~~~~~~~~ libs/annotation.c:411:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->description) FREEMEMORY(space, track->description); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:418:20: note: in expansion of macro 'FREEMEMORY' if(track->items) FREEMEMORY(space, track->items) ; ^~~~~~~~~~ libs/annotation.c:418:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->items) FREEMEMORY(space, track->items) ; ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationmultitrackDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:455:20: note: in expansion of macro 'FREEMEMORY' if(track->items) FREEMEMORY(space, track->items) ; ^~~~~~~~~~ libs/annotation.c:455:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->items) FREEMEMORY(space, track->items) ; ^~ Building... library for source build/queryalign.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/queryalign.o libs/queryalign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vstack.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vstack.o libs/vstack.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/md5.o aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/md5.o libs/md5.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Linking segemehl aarch64-linux-gnu-gcc build/matealign.o build/alignment.o build/nw.o build/mappingqual.o build/mapfrag.o build/filebuffer.o build/multicharseq.o build/mathematics.o build/manopt.o build/intervaltree.o build/bitvectoralg.o build/iupac.o build/splitalign.o build/fileBins.o build/sufarray.o build/gzip.o build/info.o build/brendel.o build/manout.o build/samio.o build/stringutils.o build/charsequence.o build/match.o build/sort.o build/radixsort.o build/pigeon.o build/junctions.o build/memory.o build/bedfiles.o build/container.o build/portable_endian.o build/gzidx.o build/bgzip.o build/karlin.o build/vtprogressbar.o build/kdchain.o build/fileio.o build/sw.o build/samheader.o build/bitArray.o build/segemehl_helper.o build/aluruSort.o build/vqueue.o build/bamio.o build/stack.o build/kdseed.o build/merge.o build/debug.o build/seqclip.o build/locus.o build/bitVector.o build/biofiles.o build/annotation.o build/queryalign.o build/vstack.o build/md5.o build/segemehl.o -o ./segemehl.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/manout.o: in function `se_openOutputDevices': ./libs/manout.c:701: undefined reference to `sam_hdr_write' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/manout.c:709: undefined reference to `sam_hdr_write' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/manout.o: in function `se_closeOutputDevices': ./libs/manout.c:841: undefined reference to `hts_close' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/manout.c:847: undefined reference to `bam_hdr_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionGetContext2': ./libs/bamio.c:208: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:208: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamGetContextCode': ./libs/bamio.c:241: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:241: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionMethylSimple': ./libs/bamio.c:369: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:369: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:369: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:369: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionPrint': ./libs/bamio.c:475: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o:./libs/bamio.c:478: more undefined references to `seq_nt16_str' follow /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionAddRef': ./libs/bamio.c:494: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:494: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:496: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:496: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:498: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o:./libs/bamio.c:499: more undefined references to `seq_nt16_table' follow /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionDumpRef': ./libs/bamio.c:507: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:509: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamGetQuerySeqString': ./libs/bamio.c:590: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:591: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_sam_itr_next_buffered': ./libs/bamio.c:620: undefined reference to `hts_itr_next' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamMethylStringWrite': ./libs/bamio.c:643: undefined reference to `sam_format1' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamMethylStringProcess': ./libs/bamio.c:703: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:708: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:727: undefined reference to `bam_cigar2rlen' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamGetContextCode': ./libs/bamio.c:241: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamMethylStringProcess': ./libs/bamio.c:750: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:703: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:708: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:727: undefined reference to `bam_cigar2rlen' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamGetContextCode': ./libs/bamio.c:241: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamMethylStringProcess': ./libs/bamio.c:750: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:752: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionProcess': ./libs/bamio.c:835: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:836: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:840: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:841: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:844: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:849: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectioMethylWorker': ./libs/bamio.c:1017: undefined reference to `sam_itr_queryi' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1027: undefined reference to `faidx_fetch_seq' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionAddRef': ./libs/bamio.c:494: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:494: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:496: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:496: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:498: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o:./libs/bamio.c:499: more undefined references to `seq_nt16_table' follow /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectioMethylWorker': ./libs/bamio.c:1047: undefined reference to `hts_itr_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1047: undefined reference to `hts_itr_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamCrossSectionProcess': ./libs/bamio.c:835: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:836: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:840: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:841: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:844: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:849: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamMethylStringWorker': ./libs/bamio.c:1078: undefined reference to `sam_itr_queryi' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1083: undefined reference to `faidx_fetch_seq' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1091: undefined reference to `hts_itr_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamLoadInfo': ./libs/bamio.c:1104: undefined reference to `hts_open' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1110: undefined reference to `sam_hdr_read' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1114: undefined reference to `sam_index_load' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1120: undefined reference to `fai_load' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamDestructInfo': ./libs/bamio.c:1132: undefined reference to `fai_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1133: undefined reference to `bam_hdr_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1134: undefined reference to `hts_idx_destroy' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1135: undefined reference to `hts_close' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamGetHeader': ./libs/bamio.c:1157: undefined reference to `sam_hdr_parse' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamSamrec2Bamrec': ./libs/bamio.c:1180: undefined reference to `bam_init1' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1183: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1187: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1192: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1196: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1200: undefined reference to `sam_parse1' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1197: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1189: undefined reference to `ksprintf' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamPrintBamrec': ./libs/bamio.c:1229: undefined reference to `sam_write1' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1237: undefined reference to `bam_destroy1' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: build/bamio.o: in function `bl_bamOpenFile': ./libs/bamio.c:1254: undefined reference to `hts_open' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1258: undefined reference to `hts_set_cache_size' /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: ./libs/bamio.c:1258: undefined reference to `hts_set_cache_size' collect2: error: ld returned 1 exit status make[2]: *** [Makefile:32: segemehl] Error 1 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc all returned exit code 2 make[1]: *** [debian/rules:9: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:6: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-07-08T06:04:18Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 8248 Build-Time: 39 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 28 Job: segemehl_0.3.4-1 Machine Architecture: amd64 Package: segemehl Package-Time: 81 Source-Version: 0.3.4-1 Space: 8248 Status: attempted Version: 0.3.4-1 -------------------------------------------------------------------------------- Finished at 2019-07-08T06:04:18Z Build needed 00:01:21, 8248k disk space