sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | segemehl 0.3.4-1 (armhf) Mon, 14 Oct 2019 02:07:21 +0000 | +==============================================================================+ Package: segemehl Version: 0.3.4-1 Source Version: 0.3.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-09b756ef-cccb-49a4-ac67-e0059410dc2d' with '<>' I: NOTICE: Log filtering will replace 'build/segemehl-XmggvO/resolver-q8oKR1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-13-0819.50.pdiff [10.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-13-1412.14.pdiff [12.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-13-2014.06.pdiff [22.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-13-2014.06.pdiff [22.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-13-0819.50.pdiff [10.9 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-13-1412.14.pdiff [18.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-13-2014.06.pdiff [11.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-13-2014.06.pdiff [11.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7969 kB] Fetched 8250 kB in 2s (4176 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'segemehl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/segemehl.git Please use: git clone https://salsa.debian.org/med-team/segemehl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (dsc) [2000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (tar) [244 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main segemehl 0.3.4-1 (diff) [5536 B] Fetched 252 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/segemehl-XmggvO/segemehl-0.3.4' with '<>' I: NOTICE: Log filtering will replace 'build/segemehl-XmggvO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [427 B] Get:5 copy:/<>/apt_archive ./ Packages [516 B] Fetched 1900 B in 0s (94.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbsd0 libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armhf libelf1 libffi6:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libgcrypt20:armhf libglib2.0-0 libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgssapi-krb5-2:armhf libhogweed4:armhf libhts-dev:armhf libhts2:armhf libicu63 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf libldap-common liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses-dev:armhf libncurses6 libncurses6:armhf libncursesw6:armhf libnettle6:armhf libnghttp2-14:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl1.1:armhf libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db pkg-config po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf rng-tools:armhf gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf ncurses-doc:armhf libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armhf krb5-locales:armhf libgpm2 libgpm2:armhf publicsuffix:armhf libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbsd0 libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armhf libelf1 libffi6:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libgcrypt20:armhf libglib2.0-0 libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgssapi-krb5-2:armhf libhogweed4:armhf libhts-dev:armhf libhts2:armhf libicu63 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf libldap-common liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses-dev:armhf libncurses6 libncurses6:armhf libncursesw6:armhf libnettle6:armhf libnghttp2-14:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl1.1:armhf libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 75.1 MB of archives. After this operation, 263 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b5 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-9 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.33-2 [2720 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-8cross1 [193 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [6808 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-1cross7 [1122 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-8cross1 [37.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-8cross1 [73.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-8cross1 [6688 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-8cross1 [362 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-8cross1 [392 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-8cross1 [112 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-8cross1 [665 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [7143 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.2.9-2cross7 [1312 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-1cross7 [2122 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-8cross1 [1717 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [7385 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.1-1 [1317 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.2.1-9 [37.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-2 [2341 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-9 [369 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.2.1-9 [6876 B] Get:79 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli1 armhf 1.0.7-3 [259 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-2 [44.4 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.2.17-1+b1 [1232 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-2 [2141 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.4-1 [70.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.1.2+dfsg-4 [205 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armhf libnettle6 armhf 3.5.1+really3.4.1-1 [228 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed4 armhf 3.5.1+really3.4.1-1 [130 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-2 [371 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.2.0-2 [80.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libffi6 armhf 3.2.1-9 [18.9 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.23.17-2 [300 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.14-3 [49.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.6.9-5 [1107 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.17-6 [61.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.17-6 [114 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1d-2 [1305 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.17-6 [322 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.17-6 [135 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.6 [597 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1 [67.3 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-2 armhf 2.1.27+dfsg-1 [98.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libldap-2.4-2 armhf 2.4.48+dfsg-1+b1 [204 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libnghttp2-14 armhf 1.39.2-1 [72.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1+b1 [85.1 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libgpg-error0 armhf 1.36-7 [63.1 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libgcrypt20 armhf 1.8.5-3 [502 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf libcurl3-gnutls armhf 7.66.0-1 [299 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libdeflate0 armhf 1.3-3 [71.3 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.2.1-9 [75.3 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.2.1-9 [431 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.2.1-9 [113 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-9 [660 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.4-1+b1 [145 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armhf libhts2 armhf 1.9-11 [261 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armhf liblzma-dev armhf 5.2.4-1+b1 [204 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1+b1 [204 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armhf libhts-dev armhf 1.9-11 [4289 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armhf libncurses6 armhf 6.1+20190803-1 [80.2 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armhf libncursesw6 armhf 6.1+20190803-1 [106 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armhf libncurses-dev armhf 6.1+20190803-1 [298 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-9 [1748 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 75.1 MB in 1s (60.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14991 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-3+b5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b5) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../007-gcc-9-base_9.2.1-9_armhf.deb ... Unpacking gcc-9-base:armhf (9.2.1-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../014-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package binutils-arm-linux-gnueabihf. Preparing to unpack .../020-binutils-arm-linux-gnueabihf_2.33-2_amd64.deb ... Unpacking binutils-arm-linux-gnueabihf (2.33-2) ... Selecting previously unselected package gcc-9-arm-linux-gnueabihf-base:amd64. Preparing to unpack .../021-gcc-9-arm-linux-gnueabihf-base_9.2.1-8cross1_amd64.deb ... Unpacking gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-8cross1) ... Selecting previously unselected package cpp-9-arm-linux-gnueabihf. Preparing to unpack .../022-cpp-9-arm-linux-gnueabihf_9.2.1-8cross1_amd64.deb ... Unpacking cpp-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabihf. Preparing to unpack .../023-cpp-arm-linux-gnueabihf_4%3a9.2.1-3.1_amd64.deb ... Unpacking cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../024-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../025-gcc-9-cross-base_9.2.1-8cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-8cross1) ... Selecting previously unselected package libc6-armhf-cross. Preparing to unpack .../026-libc6-armhf-cross_2.29-1cross7_all.deb ... Unpacking libc6-armhf-cross (2.29-1cross7) ... Selecting previously unselected package libgcc1-armhf-cross. Preparing to unpack .../027-libgcc1-armhf-cross_1%3a9.2.1-8cross1_all.deb ... Unpacking libgcc1-armhf-cross (1:9.2.1-8cross1) ... Selecting previously unselected package libgomp1-armhf-cross. Preparing to unpack .../028-libgomp1-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libgomp1-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package libatomic1-armhf-cross. Preparing to unpack .../029-libatomic1-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libatomic1-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package libasan5-armhf-cross. Preparing to unpack .../030-libasan5-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libasan5-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package libstdc++6-armhf-cross. Preparing to unpack .../031-libstdc++6-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libstdc++6-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package libubsan1-armhf-cross. Preparing to unpack .../032-libubsan1-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libubsan1-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package libgcc-9-dev-armhf-cross. Preparing to unpack .../033-libgcc-9-dev-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libgcc-9-dev-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package gcc-9-arm-linux-gnueabihf. Preparing to unpack .../034-gcc-9-arm-linux-gnueabihf_9.2.1-8cross1_amd64.deb ... Unpacking gcc-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabihf. Preparing to unpack .../035-gcc-arm-linux-gnueabihf_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-armhf-cross. Preparing to unpack .../036-linux-libc-dev-armhf-cross_5.2.9-2cross7_all.deb ... Unpacking linux-libc-dev-armhf-cross (5.2.9-2cross7) ... Selecting previously unselected package libc6-dev-armhf-cross. Preparing to unpack .../037-libc6-dev-armhf-cross_2.29-1cross7_all.deb ... Unpacking libc6-dev-armhf-cross (2.29-1cross7) ... Selecting previously unselected package libstdc++-9-dev-armhf-cross. Preparing to unpack .../038-libstdc++-9-dev-armhf-cross_9.2.1-8cross1_all.deb ... Unpacking libstdc++-9-dev-armhf-cross (9.2.1-8cross1) ... Selecting previously unselected package g++-9-arm-linux-gnueabihf. Preparing to unpack .../039-g++-9-arm-linux-gnueabihf_9.2.1-8cross1_amd64.deb ... Unpacking g++-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Selecting previously unselected package g++-arm-linux-gnueabihf. Preparing to unpack .../040-g++-arm-linux-gnueabihf_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../041-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../042-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../043-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../044-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../045-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../046-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../047-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../048-libxml-libxml-perl_2.0134+dfsg-1+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../049-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../050-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../051-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../052-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../053-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../054-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../055-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armhf. Preparing to unpack .../056-crossbuild-essential-armhf_12.8_all.deb ... Unpacking crossbuild-essential-armhf (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../057-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../058-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../059-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../060-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../061-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../062-dh-strip-nondeterminism_1.6.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../063-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../064-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../065-libdebhelper-perl_12.6.1_all.deb ... Unpacking libdebhelper-perl (12.6.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../066-libglib2.0-0_2.62.1-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.62.1-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../067-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../068-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../069-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../070-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../071-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../072-debhelper_12.6.1_all.deb ... Unpacking debhelper (12.6.1) ... Selecting previously unselected package libgcc1:armhf. Preparing to unpack .../073-libgcc1_1%3a9.2.1-9_armhf.deb ... Unpacking libgcc1:armhf (1:9.2.1-9) ... Selecting previously unselected package libc6:armhf. Preparing to unpack .../074-libc6_2.29-2_armhf.deb ... Unpacking libc6:armhf (2.29-2) ... Selecting previously unselected package libasan5:armhf. Preparing to unpack .../075-libasan5_9.2.1-9_armhf.deb ... Unpacking libasan5:armhf (9.2.1-9) ... Selecting previously unselected package libatomic1:armhf. Preparing to unpack .../076-libatomic1_9.2.1-9_armhf.deb ... Unpacking libatomic1:armhf (9.2.1-9) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../077-libbrotli1_1.0.7-3_armhf.deb ... Unpacking libbrotli1:armhf (1.0.7-3) ... Selecting previously unselected package libbz2-1.0:armhf. Preparing to unpack .../078-libbz2-1.0_1.0.8-2_armhf.deb ... Unpacking libbz2-1.0:armhf (1.0.8-2) ... Selecting previously unselected package linux-libc-dev:armhf. Preparing to unpack .../079-linux-libc-dev_5.2.17-1+b1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.2.17-1+b1) ... Selecting previously unselected package libc6-dev:armhf. Preparing to unpack .../080-libc6-dev_2.29-2_armhf.deb ... Unpacking libc6-dev:armhf (2.29-2) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../081-libcom-err2_1.45.4-1_armhf.deb ... Unpacking libcom-err2:armhf (1.45.4-1) ... Selecting previously unselected package libgmp10:armhf. Preparing to unpack .../082-libgmp10_2%3a6.1.2+dfsg-4_armhf.deb ... Unpacking libgmp10:armhf (2:6.1.2+dfsg-4) ... Selecting previously unselected package libnettle6:armhf. Preparing to unpack .../083-libnettle6_3.5.1+really3.4.1-1_armhf.deb ... Unpacking libnettle6:armhf (3.5.1+really3.4.1-1) ... Selecting previously unselected package libhogweed4:armhf. Preparing to unpack .../084-libhogweed4_3.5.1+really3.4.1-1_armhf.deb ... Unpacking libhogweed4:armhf (3.5.1+really3.4.1-1) ... Selecting previously unselected package libunistring2:armhf. Preparing to unpack .../085-libunistring2_0.9.10-2_armhf.deb ... Unpacking libunistring2:armhf (0.9.10-2) ... Selecting previously unselected package libidn2-0:armhf. Preparing to unpack .../086-libidn2-0_2.2.0-2_armhf.deb ... Unpacking libidn2-0:armhf (2.2.0-2) ... Selecting previously unselected package libffi6:armhf. Preparing to unpack .../087-libffi6_3.2.1-9_armhf.deb ... Unpacking libffi6:armhf (3.2.1-9) ... Selecting previously unselected package libp11-kit0:armhf. Preparing to unpack .../088-libp11-kit0_0.23.17-2_armhf.deb ... Unpacking libp11-kit0:armhf (0.23.17-2) ... Selecting previously unselected package libtasn1-6:armhf. Preparing to unpack .../089-libtasn1-6_4.14-3_armhf.deb ... Unpacking libtasn1-6:armhf (4.14-3) ... Selecting previously unselected package libgnutls30:armhf. Preparing to unpack .../090-libgnutls30_3.6.9-5_armhf.deb ... Unpacking libgnutls30:armhf (3.6.9-5) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../091-libkeyutils1_1.6-6_armhf.deb ... Unpacking libkeyutils1:armhf (1.6-6) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../092-libkrb5support0_1.17-6_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-6) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../093-libk5crypto3_1.17-6_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-6) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../094-libssl1.1_1.1.1d-2_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-2) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../095-libkrb5-3_1.17-6_armhf.deb ... Unpacking libkrb5-3:armhf (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../096-libgssapi-krb5-2_1.17-6_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-6) ... Selecting previously unselected package libdb5.3:armhf. Preparing to unpack .../097-libdb5.3_5.3.28+dfsg1-0.6_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../098-libsasl2-modules-db_2.1.27+dfsg-1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../099-libsasl2-2_2.1.27+dfsg-1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../100-libldap-common_2.4.48+dfsg-1_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../101-libldap-2.4-2_2.4.48+dfsg-1+b1_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.48+dfsg-1+b1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../102-libnghttp2-14_1.39.2-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.39.2-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../103-libpsl5_0.20.2-2_armhf.deb ... Unpacking libpsl5:armhf (0.20.2-2) ... Selecting previously unselected package zlib1g:armhf. Preparing to unpack .../104-zlib1g_1%3a1.2.11.dfsg-1+b1_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../105-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libgpg-error0:armhf. Preparing to unpack .../106-libgpg-error0_1.36-7_armhf.deb ... Unpacking libgpg-error0:armhf (1.36-7) ... Selecting previously unselected package libgcrypt20:armhf. Preparing to unpack .../107-libgcrypt20_1.8.5-3_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.5-3) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../108-libssh2-1_1.8.0-2.1_armhf.deb ... Unpacking libssh2-1:armhf (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../109-libcurl3-gnutls_7.66.0-1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.66.0-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../110-libdeflate0_1.3-3_armhf.deb ... Unpacking libdeflate0:armhf (1.3-3) ... Selecting previously unselected package libgomp1:armhf. Preparing to unpack .../111-libgomp1_9.2.1-9_armhf.deb ... Unpacking libgomp1:armhf (9.2.1-9) ... Selecting previously unselected package libstdc++6:armhf. Preparing to unpack .../112-libstdc++6_9.2.1-9_armhf.deb ... Unpacking libstdc++6:armhf (9.2.1-9) ... Selecting previously unselected package libubsan1:armhf. Preparing to unpack .../113-libubsan1_9.2.1-9_armhf.deb ... Unpacking libubsan1:armhf (9.2.1-9) ... Selecting previously unselected package libgcc-9-dev:armhf. Preparing to unpack .../114-libgcc-9-dev_9.2.1-9_armhf.deb ... Unpacking libgcc-9-dev:armhf (9.2.1-9) ... Selecting previously unselected package liblzma5:armhf. Preparing to unpack .../115-liblzma5_5.2.4-1+b1_armhf.deb ... Unpacking liblzma5:armhf (5.2.4-1+b1) ... Selecting previously unselected package libhts2:armhf. Preparing to unpack .../116-libhts2_1.9-11_armhf.deb ... Unpacking libhts2:armhf (1.9-11) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../117-liblzma-dev_5.2.4-1+b1_armhf.deb ... Unpacking liblzma-dev:armhf (5.2.4-1+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../118-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../119-libhts-dev_1.9-11_armhf.deb ... Unpacking libhts-dev:armhf (1.9-11) ... Selecting previously unselected package libtinfo6:armhf. Preparing to unpack .../120-libtinfo6_6.1+20190803-1_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20190803-1) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../121-libncurses6_6.1+20190803-1_armhf.deb ... Unpacking libncurses6:armhf (6.1+20190803-1) ... Selecting previously unselected package libncursesw6:armhf. Preparing to unpack .../122-libncursesw6_6.1+20190803-1_armhf.deb ... Unpacking libncursesw6:armhf (6.1+20190803-1) ... Selecting previously unselected package libncurses-dev:armhf. Preparing to unpack .../123-libncurses-dev_6.1+20190803-1_armhf.deb ... Unpacking libncurses-dev:armhf (6.1+20190803-1) ... Selecting previously unselected package libstdc++-9-dev:armhf. Preparing to unpack .../124-libstdc++-9-dev_9.2.1-9_armhf.deb ... Unpacking libstdc++-9-dev:armhf (9.2.1-9) ... Selecting previously unselected package pkg-config. Preparing to unpack .../125-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. Preparing to unpack .../126-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.29-1cross7) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.6.1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:armhf (5.2.17-1+b1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-5) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-8cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.2.9-2cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.33-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b5) ... Setting up gcc-9-base:armhf (9.2.1-9) ... Setting up libgomp1-armhf-cross (9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libc6-dev-armhf-cross (2.29-1cross7) ... Setting up m4 (1.4.18-2) ... Setting up libatomic1-armhf-cross (9.2.1-8cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-8cross1) ... Setting up libubsan1-armhf-cross (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libc6:armhf (2.29-2) ... Setting up libtasn1-6:armhf (4.14-3) ... Setting up libc6-dev:armhf (2.29-2) ... Setting up libbz2-1.0:armhf (1.0.8-2) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.6) ... Setting up libtinfo6:armhf (6.1+20190803-1) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up liblzma5:armhf (5.2.4-1+b1) ... Setting up libgpg-error0:armhf (1.36-7) ... Setting up libgcc1:armhf (1:9.2.1-9) ... Setting up libssl1.1:armhf (1.1.1d-2) ... Setting up libbrotli1:armhf (1.0.7-3) ... Setting up libnghttp2-14:armhf (1.39.2-1) ... Setting up libunistring2:armhf (0.9.10-2) ... Setting up libdeflate0:armhf (1.3-3) ... Setting up libgcrypt20:armhf (1.8.5-3) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:armhf (3.2.1-9) ... Setting up libidn2-0:armhf (2.2.0-2) ... Setting up libcom-err2:armhf (1.45.4-1) ... Setting up libgomp1:armhf (9.2.1-9) ... Setting up libkrb5support0:armhf (1.17-6) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armhf (9.2.1-9) ... Setting up libgmp10:armhf (2:6.1.2+dfsg-4) ... Setting up libncurses6:armhf (6.1+20190803-1) ... Setting up libp11-kit0:armhf (0.23.17-2) ... Setting up libatomic1:armhf (9.2.1-9) ... Setting up libncursesw6:armhf (6.1+20190803-1) ... Setting up libk5crypto3:armhf (1.17-6) ... Setting up libnettle6:armhf (3.5.1+really3.4.1-1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1) ... Setting up liblzma-dev:armhf (5.2.4-1+b1) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up libkrb5-3:armhf (1.17-6) ... Setting up libstdc++6:armhf (9.2.1-9) ... Setting up libncurses-dev:armhf (6.1+20190803-1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libhogweed4:armhf (3.5.1+really3.4.1-1) ... Setting up debhelper (12.6.1) ... Setting up libgnutls30:armhf (3.6.9-5) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:armhf (1.17-6) ... Setting up libubsan1:armhf (9.2.1-9) ... Setting up libldap-2.4-2:armhf (2.4.48+dfsg-1+b1) ... Setting up libcurl3-gnutls:armhf (7.66.0-1) ... Setting up libgcc-9-dev:armhf (9.2.1-9) ... Setting up libstdc++-9-dev:armhf (9.2.1-9) ... Setting up libhts2:armhf (1.9-11) ... Setting up libhts-dev:armhf (1.9-11) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33-2 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-9 gcc-8_8.3.0-23 gcc-9_9.2.1-9 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-9 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-9 libstdc++6-armhf-cross_9.2.1-8cross1 linux-libc-dev_5.2.17-1+b1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.33-2 binutils-arm-linux-gnueabihf_2.33-2 binutils-common_2.33-2 binutils-x86-64-linux-gnu_2.33-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-9 cpp-9-arm-linux-gnueabihf_9.2.1-8cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-9 g++-9-arm-linux-gnueabihf_9.2.1-8cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-9 gcc-9-arm-linux-gnueabihf_9.2.1-8cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-8cross1 gcc-9-base_9.2.1-9 gcc-9-cross-base_9.2.1-8cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-9 libasan5-armhf-cross_9.2.1-8cross1 libatomic1_9.2.1-9 libatomic1-armhf-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-armhf-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-armhf-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-9 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.66.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-9 libgcc-9-dev-armhf-cross_9.2.1-8cross1 libgcc1_1:9.2.1-9 libgcc1-armhf-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-9 libgomp1-armhf-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-9 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b5 liblsan0_9.2.1-9 liblz4-1_1.9.1-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses-dev_6.1+20190803-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-6 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_9.2.1-9 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-9 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-9 libstdc++6-armhf-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-9 libubsan1_9.2.1-9 libubsan1-armhf-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.17-1+b1 linux-libc-dev-armhf-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-6 perl-base_5.30.0-6 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: segemehl Binary: segemehl Architecture: any Version: 0.3.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/segemehl Vcs-Git: https://salsa.debian.org/med-team/segemehl.git Build-Depends: debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev Package-List: segemehl deb science optional arch=any Checksums-Sha1: 676d5d11382bc053fb1d5ce90bfbac1aeb26a9d9 244092 segemehl_0.3.4.orig.tar.xz d54146ab2200a9276f993ed4af95ae36d10db41a 5536 segemehl_0.3.4-1.debian.tar.xz Checksums-Sha256: e498fb23e36d45a0d0035105812a747ca901af366d07dde431c25a49ee28abbc 244092 segemehl_0.3.4.orig.tar.xz 9d4c7b7e112ea0f4997f03e1690503789c522bb03512f265d3412f53f10ef06a 5536 segemehl_0.3.4-1.debian.tar.xz Files: 7cbc36ce09d0328089db4031663744a5 244092 segemehl_0.3.4.orig.tar.xz 9185df13b13b65722ac4f53263224bd9 5536 segemehl_0.3.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw5EIARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEQNw//faSeYUIXPlW9K94HTwfx8dVxxi0976AM X0QBzM6Uhy/txdM4uwi+IEsFb3PYNekauKs1rfFtr2/KCv8fGZnZOJJzWu0nsvyo ijwNUi9aYiWZ1bTiMZXzg2v6ifDU8ZZ16eSCudWEuplCDYxcnA66wqVoy4AaZpMx iafXO21BL2bqebKa4lGe6A1xK0wCdtJl0/vHJq+fz0l5Dz2vujh8TAesg+f+51P1 CfLutT3efDL4ptcyYAw/Ypu94tldiwSdmv8XIIRI+hlbFlPxhfL9jWssebRSjBHd Nyp0bvHdWkwflYl07P+lHljupY7peEKJ1dV6qFhQH1sUehma42EbAyRhEN4eRKqq 0l6kIZTTJy3hGPHG4a5/Tv6NejVlT5kCq91zCCcrVolRvMojipqEJyarzRKrD5Zn bF61qEkclQ/vbxut5E5W4QqhGmDvdiPWoCzJT8t7KMw/rgBqCxXTCbsjUqpwgmEh qvJJLWxr2jNMkruegCnq7JUWUzn6aeWsn6YfCmUC6RzXl3GVs0aHxmTnZE3c7haU SYWFg7zbqPzid4XSzqelgEaIsBJJuQxxU8dxeKFlau8bmkfY0E2DBJ/7abNwNaMt Pe89QEii9cccGabFXGOauruQqa1ugraJ5ZRKKPV7uoKQyfNEsVeJu/IR1y6Az3OI RxqLG9Rrlj4= =U4Hu -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 21:54:08 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./segemehl_0.3.4-1.dsc dpkg-source: info: extracting segemehl in /<> dpkg-source: info: unpacking segemehl_0.3.4.orig.tar.xz dpkg-source: info: unpacking segemehl_0.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-09b756ef-cccb-49a4-ac67-e0059410dc2d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package segemehl dpkg-buildpackage: info: source version 0.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' Cleaning... rm -f -r build segemehl haarz make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- all make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc all make[2]: Entering directory '/<>' Building... library for source build/matealign.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/matealign.o libs/matealign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: libs/matealign.c: In function ‘bl_matealign’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/matealign.c:313:15: note: in expansion of macro ‘FREEMEMORY’ 313 | if(npos[0]) FREEMEMORY(NULL, spos[0]); | ^~~~~~~~~~ libs/matealign.c:313:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 313 | if(npos[0]) FREEMEMORY(NULL, spos[0]); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/matealign.c:314:15: note: in expansion of macro ‘FREEMEMORY’ 314 | if(npos[1]) FREEMEMORY(NULL, spos[1]); | ^~~~~~~~~~ libs/matealign.c:314:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 314 | if(npos[1]) FREEMEMORY(NULL, spos[1]); | ^~ Building... library for source build/alignment.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/alignment.o libs/alignment.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/alignment.c:38: libs/alignment.c: In function ‘wrapAlignment’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/alignment.c:97:18: note: in expansion of macro ‘FREEMEMORY’ 97 | if(al->rmvseq) FREEMEMORY(NULL, al->v); | ^~~~~~~~~~ libs/alignment.c:97:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 97 | if(al->rmvseq) FREEMEMORY(NULL, al->v); | ^~ In file included from include/mathematics.h:117, from libs/alignment.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/alignment.c:98:18: note: in expansion of macro ‘FREEMEMORY’ 98 | if(al->rmuseq) FREEMEMORY(NULL, al->u); | ^~~~~~~~~~ libs/alignment.c:98:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 98 | if(al->rmuseq) FREEMEMORY(NULL, al->u); | ^~ Building... library for source build/nw.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/nw.o libs/nw.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/mappingqual.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mappingqual.o libs/mappingqual.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/mapfrag.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mapfrag.o libs/mapfrag.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/filebuffer.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/filebuffer.o libs/filebuffer.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/multicharseq.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/multicharseq.o libs/multicharseq.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: libs/multicharseq.c: In function ‘destructMultiCharSeq’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:212:7: note: in expansion of macro ‘FREEMEMORY’ 212 | FREEMEMORY(space, mseq->markpos); | ^~~~~~~~~~ libs/multicharseq.c:211:2: note: some parts of macro expansion are not guarded by this ‘if’ clause 211 | if (mseq->markpos != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:214:7: note: in expansion of macro ‘FREEMEMORY’ 214 | FREEMEMORY(space, mseq->map); | ^~~~~~~~~~ libs/multicharseq.c:213:2: note: some parts of macro expansion are not guarded by this ‘if’ clause 213 | if (mseq->map != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/multicharseq.c:216:7: note: in expansion of macro ‘FREEMEMORY’ 216 | FREEMEMORY(space, mseq->ref); | ^~~~~~~~~~ libs/multicharseq.c:215:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 215 | if (mseq->ref != NULL) | ^~ Building... library for source build/mathematics.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mathematics.o libs/mathematics.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/mathematics.c:38: libs/mathematics.c: In function ‘destructVector’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/mathematics.c:251:23: note: in expansion of macro ‘FREEMEMORY’ 251 | if (v->elements) FREEMEMORY(space, v->elements); | ^~~~~~~~~~ libs/mathematics.c:251:6: note: some parts of macro expansion are not guarded by this ‘if’ clause 251 | if (v->elements) FREEMEMORY(space, v->elements); | ^~ Building... library for source build/manopt.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manopt.o libs/manopt.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/haarz.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/haarz.o libs/haarz.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/intervaltree.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/intervaltree.o libs/intervaltree.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/mathematics.h:117, from libs/intervaltree.c:27: libs/intervaltree.c: In function ‘bl_intervaltreeDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/intervaltree.c:443:19: note: in expansion of macro ‘FREEMEMORY’ 443 | if(root->ncoll) FREEMEMORY(NULL, root->collisions); | ^~~~~~~~~~ libs/intervaltree.c:443:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 443 | if(root->ncoll) FREEMEMORY(NULL, root->collisions); | ^~ Building... library for source build/bitvectoralg.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitvectoralg.o libs/bitvectoralg.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/iupac.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/iupac.o libs/iupac.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/splitalign.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/splitalign.o libs/splitalign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function ‘bl_fixSplitAlignHoffmann’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1323:25: note: in expansion of macro ‘FREEMEMORY’ 1323 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1323:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1323 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1324:25: note: in expansion of macro ‘FREEMEMORY’ 1324 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1324:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1324 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1325:26: note: in expansion of macro ‘FREEMEMORY’ 1325 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1325:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1325 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1326:26: note: in expansion of macro ‘FREEMEMORY’ 1326 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1326:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 1326 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function ‘bl_fixSplitAlignBrendel’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1565:27: note: in expansion of macro ‘FREEMEMORY’ 1565 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1565:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1565 | if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1566:27: note: in expansion of macro ‘FREEMEMORY’ 1566 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1566:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1566 | if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1567:28: note: in expansion of macro ‘FREEMEMORY’ 1567 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~~~~~~~~~ libs/splitalign.c:1567:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1567 | if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); | ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/splitalign.c:1568:28: note: in expansion of macro ‘FREEMEMORY’ 1568 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~~~~~~~~~ libs/splitalign.c:1568:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1568 | if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); | ^~ Building... library for source build/fileBins.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileBins.o libs/fileBins.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from libs/fileBins.c:51: libs/fileBins.c: In function ‘bl_fileBinsSortLine’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/fileBins.c:901:18: note: in expansion of macro ‘FREEMEMORY’ 901 | if(fileSort) FREEMEMORY(space, line); | ^~~~~~~~~~ libs/fileBins.c:901:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 901 | if(fileSort) FREEMEMORY(space, line); | ^~ Building... library for source build/sufarray.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sufarray.o libs/sufarray.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: libs/sufarray.c: In function ‘destructSufArr’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:613:5: note: in expansion of macro ‘FREEMEMORY’ 613 | FREEMEMORY(space, arr->lcpctab); | ^~~~~~~~~~ libs/sufarray.c:612:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 612 | if (arr->lcpctab != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:615:5: note: in expansion of macro ‘FREEMEMORY’ 615 | FREEMEMORY(space, arr->inv_suftab); | ^~~~~~~~~~ libs/sufarray.c:614:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 614 | if (arr->inv_suftab != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:619:5: note: in expansion of macro ‘FREEMEMORY’ 619 | FREEMEMORY(space, arr->idvtab); | ^~~~~~~~~~ libs/sufarray.c:618:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 618 | if (arr->idvtab != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:624:5: note: in expansion of macro ‘FREEMEMORY’ 624 | FREEMEMORY(space, arr->suflink); | ^~~~~~~~~~ libs/sufarray.c:620:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 620 | if (arr->suflink != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:627:5: note: in expansion of macro ‘FREEMEMORY’ 627 | FREEMEMORY(space, arr->chldtab); | ^~~~~~~~~~ libs/sufarray.c:626:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 626 | if (arr->chldtab != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:629:5: note: in expansion of macro ‘FREEMEMORY’ 629 | FREEMEMORY(space, arr->mdfive); | ^~~~~~~~~~ libs/sufarray.c:628:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 628 | if (arr->mdfive) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:631:5: note: in expansion of macro ‘FREEMEMORY’ 631 | FREEMEMORY(space, arr->llvtab); | ^~~~~~~~~~ libs/sufarray.c:630:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 630 | if(arr->llvtab != NULL) | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/sufarray.c:636:5: note: in expansion of macro ‘FREEMEMORY’ 636 | FREEMEMORY(space, arr->id); | ^~~~~~~~~~ libs/sufarray.c:632:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 632 | if(arr->id != NULL) | ^~ Building... library for source build/gzip.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzip.o libs/gzip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found libs/gzip.c: In function ‘readCommonHeader’: libs/gzip.c:41:56: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 41 | fprintf(stderr, "common header has a length of %ld instead of %ld - not good.\n", bytesRead, sizeof(u_CommonHeader)); | ~~^ ~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d libs/gzip.c:41:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘unsigned int’ [-Wformat=] 41 | fprintf(stderr, "common header has a length of %ld instead of %ld - not good.\n", bytesRead, sizeof(u_CommonHeader)); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long int unsigned int | %d Building... library for source build/info.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/info.o libs/info.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found libs/info.c: In function ‘timestr_r’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: ‘sprintf’ output between 16 and 67 bytes into a destination of size 26 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | timeptr->tm_sec, 1900 + timeptr->tm_year); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c: In function ‘infomsg’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: ‘sprintf’ output between 16 and 67 bytes into a destination of size 26 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | timeptr->tm_sec, 1900 + timeptr->tm_year); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c: In function ‘nfolevel’: libs/info.c:64:50: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: ‘sprintf’ output between 16 and 67 bytes into a destination of size 26 64 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | timeptr->tm_sec, 1900 + timeptr->tm_year); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/brendel.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/brendel.o libs/brendel.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/manout.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manout.o libs/manout.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/samio.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samio.o libs/samio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function ‘bl_samDestructTag’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:102:15: note: in expansion of macro ‘FREEMEMORY’ 102 | if(kv->tag) FREEMEMORY(NULL, kv->tag); | ^~~~~~~~~~ libs/samio.c:102:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 102 | if(kv->tag) FREEMEMORY(NULL, kv->tag); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:103:15: note: in expansion of macro ‘FREEMEMORY’ 103 | if(kv->val) FREEMEMORY(NULL, kv->val); | ^~~~~~~~~~ libs/samio.c:103:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 103 | if(kv->val) FREEMEMORY(NULL, kv->val); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:104:16: note: in expansion of macro ‘FREEMEMORY’ 104 | if(kv->type) FREEMEMORY(NULL, kv->type); | ^~~~~~~~~~ libs/samio.c:104:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 104 | if(kv->type) FREEMEMORY(NULL, kv->type); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:105:15: note: in expansion of macro ‘FREEMEMORY’ 105 | if(kv->key) FREEMEMORY(NULL, kv->key); | ^~~~~~~~~~ libs/samio.c:105:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 105 | if(kv->key) FREEMEMORY(NULL, kv->key); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function ‘bl_samDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:112:21: note: in expansion of macro ‘FREEMEMORY’ 112 | if(samrec->qname) FREEMEMORY(NULL, samrec->qname); | ^~~~~~~~~~ libs/samio.c:112:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 112 | if(samrec->qname) FREEMEMORY(NULL, samrec->qname); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:113:21: note: in expansion of macro ‘FREEMEMORY’ 113 | if(samrec->rname) FREEMEMORY(NULL, samrec->rname); | ^~~~~~~~~~ libs/samio.c:113:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 113 | if(samrec->rname) FREEMEMORY(NULL, samrec->rname); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:114:21: note: in expansion of macro ‘FREEMEMORY’ 114 | if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); | ^~~~~~~~~~ libs/samio.c:114:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 114 | if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:115:21: note: in expansion of macro ‘FREEMEMORY’ 115 | if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); | ^~~~~~~~~~ libs/samio.c:115:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 115 | if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:116:21: note: in expansion of macro ‘FREEMEMORY’ 116 | if(samrec->seq) FREEMEMORY(NULL, samrec->seq); | ^~~~~~~~~~ libs/samio.c:116:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 116 | if(samrec->seq) FREEMEMORY(NULL, samrec->seq); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:117:21: note: in expansion of macro ‘FREEMEMORY’ 117 | if(samrec->qual) FREEMEMORY(NULL, samrec->qual); | ^~~~~~~~~~ libs/samio.c:117:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 117 | if(samrec->qual) FREEMEMORY(NULL, samrec->qual); | ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/samio.c:121:20: note: in expansion of macro ‘FREEMEMORY’ 121 | if(samrec->tags) FREEMEMORY(NULL, samrec->tags); | ^~~~~~~~~~ libs/samio.c:121:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 121 | if(samrec->tags) FREEMEMORY(NULL, samrec->tags); | ^~ libs/samio.c: In function ‘bl_samgetNextSplitRefIdx’: libs/samio.c:369:3: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 369 | fprintf(stderr, "ref: '%s'\n", ref); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/stringutils.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stringutils.o libs/stringutils.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/stringutils.c:39: libs/stringutils.c: In function ‘destructStringset’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/stringutils.c:274:9: note: in expansion of macro ‘FREEMEMORY’ 274 | FREEMEMORY(space, s->strings[i].str); | ^~~~~~~~~~ libs/stringutils.c:273:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 273 | if(s->strings[i].str != NULL) | ^~ Building... library for source build/charsequence.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/charsequence.o libs/charsequence.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from libs/charsequence.c:26: libs/charsequence.c: In function ‘destructSequence’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:467:4: note: in expansion of macro ‘FREEMEMORY’ 467 | FREEMEMORY(space, sequence->sequence); | ^~~~~~~~~~ libs/charsequence.c:466:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 466 | if (sequence->sequence != NULL) | ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:470:5: note: in expansion of macro ‘FREEMEMORY’ 470 | FREEMEMORY(space, sequence->alphabetname); | ^~~~~~~~~~ libs/charsequence.c:469:2: note: some parts of macro expansion are not guarded by this ‘if’ clause 469 | if (sequence->alphabetname != NULL) | ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:472:2: note: in expansion of macro ‘FREEMEMORY’ 472 | FREEMEMORY(space, sequence->url); | ^~~~~~~~~~ libs/charsequence.c:471:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 471 | if (sequence->url != NULL) | ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/charsequence.c:474:2: note: in expansion of macro ‘FREEMEMORY’ 474 | FREEMEMORY(space, sequence->info); | ^~~~~~~~~~ libs/charsequence.c:473:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 473 | if (sequence->info != NULL) | ^~ Building... library for source build/match.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/match.o libs/match.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/sort.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sort.o libs/sort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/radixsort.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/radixsort.o libs/radixsort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/pigeon.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/pigeon.o libs/pigeon.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/segemehl.h:44, from libs/pigeon.c:35: libs/pigeon.c: In function ‘pigeon’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/pigeon.c:352:13: note: in expansion of macro ‘FREEMEMORY’ 352 | if(check) FREEMEMORY(space, check); | ^~~~~~~~~~ libs/pigeon.c:352:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 352 | if(check) FREEMEMORY(space, check); | ^~ Building... library for source build/junctions.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/junctions.o libs/junctions.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/memory.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/memory.o libs/memory.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/segemehl.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl.o libs/segemehl.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bedfiles.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bedfiles.o libs/bedfiles.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/container.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/container.o libs/container.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/portable_endian.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/portable_endian.o libs/portable_endian.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/gzidx.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzidx.o libs/gzidx.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bgzip.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bgzip.o libs/bgzip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/karlin.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/karlin.o libs/karlin.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vtprogressbar.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vtprogressbar.o libs/vtprogressbar.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/kdchain.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdchain.o libs/kdchain.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/fileio.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileio.o libs/fileio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/sw.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sw.o libs/sw.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/samheader.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samheader.o libs/samheader.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bitArray.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitArray.o libs/bitArray.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/segemehl_helper.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl_helper.o libs/segemehl_helper.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/aluruSort.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/aluruSort.o libs/aluruSort.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vqueue.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vqueue.o libs/vqueue.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bamio.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bamio.o libs/bamio.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from include/bamio.h:21, from libs/bamio.c:32: libs/bamio.c: In function ‘bl_bamCrossSectionDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/bamio.c:468:20: note: in expansion of macro ‘FREEMEMORY’ 468 | if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); | ^~~~~~~~~~ libs/bamio.c:468:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 468 | if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); | ^~ Building... library for source build/stack.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stack.o libs/stack.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/kdseed.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdseed.o libs/kdseed.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/merge.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/merge.o libs/merge.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/merge.c:34: libs/merge.c: In function ‘se_mergeWorker’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/merge.c:1096:20: note: in expansion of macro ‘FREEMEMORY’ 1096 | if(curkey) FREEMEMORY(NULL, curkey); | ^~~~~~~~~~ libs/merge.c:1096:9: note: some parts of macro expansion are not guarded by this ‘if’ clause 1096 | if(curkey) FREEMEMORY(NULL, curkey); | ^~ In file included from include/stringutils.h:27, from libs/merge.c:34: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/merge.c:1216:26: note: in expansion of macro ‘FREEMEMORY’ 1216 | if(!reads && curkey) FREEMEMORY(NULL, curkey); | ^~~~~~~~~~ libs/merge.c:1216:5: note: some parts of macro expansion are not guarded by this ‘if’ clause 1216 | if(!reads && curkey) FREEMEMORY(NULL, curkey); | ^~ Building... library for source build/debug.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/debug.o libs/debug.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/seqclip.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/seqclip.o libs/seqclip.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/sw.h:38, from libs/seqclip.c:44: libs/seqclip.c: In function ‘bl_Find3PrimeGreedy’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/seqclip.c:529:9: note: in expansion of macro ‘FREEMEMORY’ 529 | FREEMEMORY(space, adapter); | ^~~~~~~~~~ libs/seqclip.c:528:7: note: some parts of macro expansion are not guarded by this ‘if’ clause 528 | if(adapter) | ^~ Building... library for source build/locus.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/locus.o libs/locus.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/bitVector.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitVector.o libs/bitVector.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/biofiles.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/biofiles.o libs/biofiles.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/annotation.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/annotation.o libs/annotation.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function ‘bl_annotationitemDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:149:23: note: in expansion of macro ‘FREEMEMORY’ 149 | if(item->chromname) FREEMEMORY(space, item->chromname); | ^~~~~~~~~~ libs/annotation.c:149:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 149 | if(item->chromname) FREEMEMORY(space, item->chromname); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:150:18: note: in expansion of macro ‘FREEMEMORY’ 150 | if(item->name) FREEMEMORY(space, item->name); | ^~~~~~~~~~ libs/annotation.c:150:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 150 | if(item->name) FREEMEMORY(space, item->name); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:151:21: note: in expansion of macro ‘FREEMEMORY’ 151 | if(item->itemRgb) FREEMEMORY(space, item->itemRgb); | ^~~~~~~~~~ libs/annotation.c:151:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 151 | if(item->itemRgb) FREEMEMORY(space, item->itemRgb); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:152:24: note: in expansion of macro ‘FREEMEMORY’ 152 | if(item->blockSizes) FREEMEMORY(space, item->blockSizes); | ^~~~~~~~~~ libs/annotation.c:152:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 152 | if(item->blockSizes) FREEMEMORY(space, item->blockSizes); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:153:25: note: in expansion of macro ‘FREEMEMORY’ 153 | if(item->blockStarts) FREEMEMORY(space, item->blockStarts); | ^~~~~~~~~~ libs/annotation.c:153:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 153 | if(item->blockStarts) FREEMEMORY(space, item->blockStarts); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:154:26: note: in expansion of macro ‘FREEMEMORY’ 154 | if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); | ^~~~~~~~~~ libs/annotation.c:154:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 154 | if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:155:26: note: in expansion of macro ‘FREEMEMORY’ 155 | if(item->blockStrands) FREEMEMORY(space, item->blockStrands); | ^~~~~~~~~~ libs/annotation.c:155:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 155 | if(item->blockStrands) FREEMEMORY(space, item->blockStrands); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:156:20: note: in expansion of macro ‘FREEMEMORY’ 156 | if(item->source) FREEMEMORY(space, item->source); | ^~~~~~~~~~ libs/annotation.c:156:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 156 | if(item->source) FREEMEMORY(space, item->source); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function ‘bl_annotationtrackDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:409:24: note: in expansion of macro ‘FREEMEMORY’ 409 | if(track->trackname) FREEMEMORY(space, track->trackname); | ^~~~~~~~~~ libs/annotation.c:409:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 409 | if(track->trackname) FREEMEMORY(space, track->trackname); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:410:23: note: in expansion of macro ‘FREEMEMORY’ 410 | if(track->filename) FREEMEMORY(space, track->filename); | ^~~~~~~~~~ libs/annotation.c:410:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 410 | if(track->filename) FREEMEMORY(space, track->filename); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:411:26: note: in expansion of macro ‘FREEMEMORY’ 411 | if(track->description) FREEMEMORY(space, track->description); | ^~~~~~~~~~ libs/annotation.c:411:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 411 | if(track->description) FREEMEMORY(space, track->description); | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:418:20: note: in expansion of macro ‘FREEMEMORY’ 418 | if(track->items) FREEMEMORY(space, track->items) ; | ^~~~~~~~~~ libs/annotation.c:418:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 418 | if(track->items) FREEMEMORY(space, track->items) ; | ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function ‘bl_annotationmultitrackDestruct’: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] 32 | #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL | ^~~~ libs/annotation.c:455:20: note: in expansion of macro ‘FREEMEMORY’ 455 | if(track->items) FREEMEMORY(space, track->items) ; | ^~~~~~~~~~ libs/annotation.c:455:3: note: some parts of macro expansion are not guarded by this ‘if’ clause 455 | if(track->items) FREEMEMORY(space, track->items) ; | ^~ Building... library for source build/queryalign.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/queryalign.o libs/queryalign.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/vstack.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vstack.o libs/vstack.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Building... library for source build/md5.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/md5.o libs/md5.c Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found Linking segemehl arm-linux-gnueabihf-gcc build/matealign.o build/alignment.o build/nw.o build/mappingqual.o build/mapfrag.o build/filebuffer.o build/multicharseq.o build/mathematics.o build/manopt.o build/intervaltree.o build/bitvectoralg.o build/iupac.o build/splitalign.o build/fileBins.o build/sufarray.o build/gzip.o build/info.o build/brendel.o build/manout.o build/samio.o build/stringutils.o build/charsequence.o build/match.o build/sort.o build/radixsort.o build/pigeon.o build/junctions.o build/memory.o build/bedfiles.o build/container.o build/portable_endian.o build/gzidx.o build/bgzip.o build/karlin.o build/vtprogressbar.o build/kdchain.o build/fileio.o build/sw.o build/samheader.o build/bitArray.o build/segemehl_helper.o build/aluruSort.o build/vqueue.o build/bamio.o build/stack.o build/kdseed.o build/merge.o build/debug.o build/seqclip.o build/locus.o build/bitVector.o build/biofiles.o build/annotation.o build/queryalign.o build/vstack.o build/md5.o build/segemehl.o -o ./segemehl.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable No package 'htslib' found /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/manout.o: in function `se_openOutputDevices': ./libs/manout.c:701: undefined reference to `sam_hdr_write' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/manout.c:709: undefined reference to `sam_hdr_write' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/manout.o: in function `se_closeOutputDevices': ./libs/manout.c:841: undefined reference to `hts_close' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/manout.c:847: undefined reference to `bam_hdr_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionGetContext2': ./libs/bamio.c:224: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamGetContextCode': ./libs/bamio.c:235: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionMethylSimple': ./libs/bamio.c:384: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionPrint': ./libs/bamio.c:485: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionAddRef': ./libs/bamio.c:501: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionDumpRef': ./libs/bamio.c:511: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamGetQuerySeqString': ./libs/bamio.c:596: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_sam_itr_next_buffered': ./libs/bamio.c:620: undefined reference to `hts_itr_next' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamMethylStringWrite': ./libs/bamio.c:643: undefined reference to `sam_format1' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamMethylStringProcess': ./libs/bamio.c:703: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:708: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:727: undefined reference to `bam_cigar2rlen' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:813: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:813: undefined reference to `seq_nt16_str' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectionProcess': ./libs/bamio.c:835: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:836: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:840: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:841: undefined reference to `bam_aux_get' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:844: undefined reference to `bam_aux2i' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:849: undefined reference to `bam_aux2Z' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamCrossSectioMethylWorker': ./libs/bamio.c:1017: undefined reference to `sam_itr_queryi' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1027: undefined reference to `faidx_fetch_seq' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1047: undefined reference to `hts_itr_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1054: undefined reference to `seq_nt16_table' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamMethylStringWorker': ./libs/bamio.c:1078: undefined reference to `sam_itr_queryi' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1083: undefined reference to `faidx_fetch_seq' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1091: undefined reference to `hts_itr_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamLoadInfo': ./libs/bamio.c:1104: undefined reference to `hts_open' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1110: undefined reference to `sam_hdr_read' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1114: undefined reference to `sam_index_load' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1120: undefined reference to `fai_load' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamDestructInfo': ./libs/bamio.c:1132: undefined reference to `fai_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1133: undefined reference to `bam_hdr_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1134: undefined reference to `hts_idx_destroy' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamGetHeader': ./libs/bamio.c:1157: undefined reference to `sam_hdr_parse' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamSamrec2Bamrec': ./libs/bamio.c:1180: undefined reference to `bam_init1' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1183: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1187: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1192: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1196: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1200: undefined reference to `sam_parse1' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1197: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1189: undefined reference to `ksprintf' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamPrintBamrec': ./libs/bamio.c:1229: undefined reference to `sam_write1' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamOpenFile': ./libs/bamio.c:1254: undefined reference to `hts_open' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: ./libs/bamio.c:1258: undefined reference to `hts_set_cache_size' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamDestructInfo': ./libs/bamio.c:1135: undefined reference to `hts_close' /usr/lib/gcc-cross/arm-linux-gnueabihf/9/../../../../arm-linux-gnueabihf/bin/ld: build/bamio.o: in function `bl_bamPrintBamrec': ./libs/bamio.c:1237: undefined reference to `bam_destroy1' collect2: error: ld returned 1 exit status make[2]: *** [Makefile:32: segemehl] Error 1 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc all returned exit code 2 make[1]: *** [debian/rules:9: override_dh_auto_build] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:6: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-10-14T02:08:30Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 5328 Build-Time: 36 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 20 Job: segemehl_0.3.4-1 Machine Architecture: amd64 Package: segemehl Package-Time: 69 Source-Version: 0.3.4-1 Space: 5328 Status: attempted Version: 0.3.4-1 -------------------------------------------------------------------------------- Finished at 2019-10-14T02:08:30Z Build needed 00:01:09, 5328k disk space