sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley

+==============================================================================+
| sga 0.10.15-7 (armel)                        Mon, 28 Nov 2022 22:19:19 +0000 |
+==============================================================================+

Package: sga
Version: 0.10.15-7
Source Version: 0.10.15-7
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-69c68e85-1591-4a08-9c43-e17018c4b14b' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/sga-iQGQJs/resolver-yUtb9w' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian sid InRelease [161 kB]
Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2022-11-28-2014.30-F-2022-11-28-0208.23.pdiff [67.1 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2022-11-28-2014.30-F-2022-11-28-0208.23.pdiff [67.1 kB]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-11-28-2014.30-F-2022-11-28-0208.23.pdiff [68.7 kB]
Get:6 http://localhost:3142/debian sid/main armel Packages [8988 kB]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-11-28-2014.30-F-2022-11-28-0208.23.pdiff [68.7 kB]
Fetched 9412 kB in 3s (3587 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  debconf
1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 121 kB of archives.
After this operation, 21.5 kB disk space will be freed.
Get:1 http://localhost:3142/debian sid/main amd64 debconf all 1.5.80 [121 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 121 kB in 0s (0 B/s)
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 15673 files and directories currently installed.)
Preparing to unpack .../debconf_1.5.80_all.deb ...
Unpacking debconf (1.5.80) over (1.5.79) ...
Setting up debconf (1.5.80) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'sga' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/sga.git
Please use:
git clone https://salsa.debian.org/med-team/sga.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6786 kB of source archives.
Get:1 http://localhost:3142/debian sid/main sga 0.10.15-7 (dsc) [2084 B]
Get:2 http://localhost:3142/debian sid/main sga 0.10.15-7 (tar) [6570 kB]
Get:3 http://localhost:3142/debian sid/main sga 0.10.15-7 (diff) [214 kB]
Fetched 6786 kB in 0s (165 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/sga-iQGQJs/sga-0.10.15' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/sga-iQGQJs' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev | libz-dev, libbamtools-dev, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev, libbamtools-dev, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [476 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [527 B]
Fetched 1960 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi
  g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi
  gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base
  gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross
  libatomic1:armel libatomic1-armel-cross libbamtools-dev:armel
  libbamtools2.5.2:armel libc6:armel libc6-armel-cross libc6-dev:armel
  libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl
  libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel
  libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross
  libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72
  libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
  libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1
  libmpdec3 libncursesw6 libnsl-dev:armel libnsl2:armel libpipeline1
  libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8
  libsparsehash-dev libsqlite3-0 libssl3:armel libstdc++-11-dev:armel
  libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross
  libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool
  libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel
  linux-libc-dev-armel-cross m4 man-db media-types po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.10
  python3.10-minimal readline-common sensible-utils ucf zlib1g:armel
  zlib1g-dev:armel
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
  cpp-12-doc cpp-doc dh-make flit python3-build python3-tomli
  python3-installer binutils-multiarch gcc-12-doc manpages-dev flex bison
  gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  groff libbamtools-doc:armel glibc-doc:armel libc-l10n:armel locales:armel
  libnss-nis:armel libnss-nisplus:armel manpages-dev:armel krb5-doc:armel
  krb5-user:armel libstdc++-11-doc:armel libtool-doc gfortran
  | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv
  python3.10-venv python3.10-doc binfmt-support readline-doc
Recommended packages:
  curl | wget | lynx libidn2-0:armel libarchive-cpio-perl krb5-locales:armel
  libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl
  | libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi
  g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi
  gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base
  gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross
  libatomic1:armel libatomic1-armel-cross libbamtools-dev:armel
  libbamtools2.5.2:armel libc6:armel libc6-armel-cross libc6-dev:armel
  libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl
  libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel
  libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross
  libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72
  libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
  libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1
  libmpdec3 libncursesw6 libnsl-dev:armel libnsl2:armel libpipeline1
  libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8
  libsparsehash-dev libsqlite3-0 libssl3:armel libstdc++-11-dev:armel
  libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross
  libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool
  libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel
  linux-libc-dev-armel-cross m4 man-db media-types po-debconf python3
  python3-distutils python3-lib2to3 python3-minimal python3.10
  python3.10-minimal readline-common sbuild-build-depends-main-dummy:armel
  sensible-utils ucf zlib1g:armel zlib1g-dev:armel
0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded.
Need to get 91.1 MB of archives.
After this operation, 365 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB]
Get:3 http://localhost:3142/debian sid/main amd64 libpython3.10-minimal amd64 3.10.8-3 [784 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get:5 http://localhost:3142/debian sid/main amd64 python3.10-minimal amd64 3.10.8-3 [1951 kB]
Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.10.6-3 [25.5 kB]
Get:7 http://localhost:3142/debian sid/main amd64 media-types all 8.0.0 [33.4 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB]
Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB]
Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.2 [68.5 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.2 [165 kB]
Get:12 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB]
Get:13 http://localhost:3142/debian sid/main amd64 libpython3.10-stdlib amd64 3.10.8-3 [1685 kB]
Get:14 http://localhost:3142/debian sid/main amd64 python3.10 amd64 3.10.8-3 [506 kB]
Get:15 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-3 [8588 B]
Get:16 http://localhost:3142/debian sid/main amd64 python3 amd64 3.10.6-3 [25.2 kB]
Get:17 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB]
Get:18 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB]
Get:19 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB]
Get:20 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB]
Get:21 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB]
Get:22 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:23 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB]
Get:24 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get:26 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.1-1 [1384 kB]
Get:27 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB]
Get:28 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB]
Get:29 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB]
Get:30 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB]
Get:33 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.39-8 [3232 kB]
Get:34 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi-base amd64 12.2.0-9cross2 [37.3 kB]
Get:35 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [8663 kB]
Get:36 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:12.2.0-1 [17.2 kB]
Get:37 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.19 [16.3 kB]
Get:38 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-9cross2 [32.8 kB]
Get:39 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.36-3cross1 [885 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 12.2.0-9cross2 [38.4 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 12.2.0-9cross2 [96.8 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 12.2.0-9cross2 [8912 B]
Get:43 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 12.2.0-9cross2 [2092 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 12.2.0-9cross2 [464 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 12.2.0-9cross2 [862 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armel-cross all 12.2.0-9cross2 [732 kB]
Get:47 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [17.0 MB]
Get:48 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:12.2.0-1 [1452 B]
Get:49 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.0.6-2cross1 [1763 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.36-3cross1 [1284 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armel-cross all 12.2.0-9cross2 [2033 kB]
Get:52 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [9594 kB]
Get:53 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:12.2.0-1 [1176 B]
Get:54 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:55 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:56 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB]
Get:58 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get:62 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:63 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB]
Get:64 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:65 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:66 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.19 [15.3 kB]
Get:68 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.19 [25.6 kB]
Get:69 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.9 [6704 B]
Get:70 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.1 [80.8 kB]
Get:71 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB]
Get:72 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:73 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:74 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get:75 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:76 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:77 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-1 [172 kB]
Get:78 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB]
Get:79 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB]
Get:80 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:81 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:82 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.1 [941 kB]
Get:83 http://localhost:3142/debian sid/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:84 http://localhost:3142/debian sid/main amd64 python3-distutils all 3.10.8-1 [139 kB]
Get:85 http://localhost:3142/debian sid/main amd64 dh-python all 5.20221122 [108 kB]
Get:86 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.3.0-8 [209 kB]
Get:87 http://localhost:3142/debian sid/main armel gcc-12-base armel 12.2.0-9 [37.1 kB]
Get:88 http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.2 [202 kB]
Get:89 http://localhost:3142/debian sid/main armel libgcc-s1 armel 12.2.0-9 [38.4 kB]
Get:90 http://localhost:3142/debian sid/main armel libc6 armel 2.36-5 [2190 kB]
Get:91 http://localhost:3142/debian sid/main armel libasan6 armel 11.3.0-8 [1945 kB]
Get:92 http://localhost:3142/debian sid/main armel libatomic1 armel 12.2.0-9 [9152 B]
Get:93 http://localhost:3142/debian sid/main armel libstdc++6 armel 12.2.0-9 [506 kB]
Get:94 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.2.13.dfsg-1 [73.6 kB]
Get:95 http://localhost:3142/debian sid/main armel libbamtools2.5.2 armel 2.5.2+dfsg-2 [127 kB]
Get:96 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.0.10-1 [1650 kB]
Get:97 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.33-1 [96.0 kB]
Get:98 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.33-1 [125 kB]
Get:99 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.46.6~rc1-1+b1 [14.2 kB]
Get:100 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-1 [29.2 kB]
Get:101 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-1 [74.0 kB]
Get:102 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-1 [14.8 kB]
Get:103 http://localhost:3142/debian sid/main armel libssl3 armel 3.0.7-1 [1621 kB]
Get:104 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-1 [284 kB]
Get:105 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-1 [110 kB]
Get:106 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.3+ds-1 [72.0 kB]
Get:107 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-2 [33.0 kB]
Get:108 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.3+ds-1 [182 kB]
Get:109 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-2 [61.7 kB]
Get:110 http://localhost:3142/debian sid/main armel libc6-dev armel 2.36-5 [1287 kB]
Get:111 http://localhost:3142/debian sid/main armel zlib1g-dev armel 1:1.2.13.dfsg-1 [902 kB]
Get:112 http://localhost:3142/debian sid/main armel libbamtools-dev armel 2.5.2+dfsg-2 [195 kB]
Get:113 http://localhost:3142/debian sid/main armel libgomp1 armel 12.2.0-9 [99.6 kB]
Get:114 http://localhost:3142/debian sid/main armel libubsan1 armel 12.2.0-9 [863 kB]
Get:115 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.3.0-8 [702 kB]
Get:116 http://localhost:3142/debian sid/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB]
Get:117 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.3.0-8 [1974 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 91.1 MB in 0s (184 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 15673 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-4+b3_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b3) ...
Selecting previously unselected package libpython3.10-minimal:amd64.
Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ...
Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.5.0-1) ...
Selecting previously unselected package python3.10-minimal.
Preparing to unpack .../python3.10-minimal_3.10.8-3_amd64.deb ...
Unpacking python3.10-minimal (3.10.8-3) ...
Setting up libpython3.10-minimal:amd64 (3.10.8-3) ...
Setting up libexpat1:amd64 (2.5.0-1) ...
Setting up python3.10-minimal (3.10.8-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 15993 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.10.6-3_amd64.deb ...
Unpacking python3-minimal (3.10.6-3) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_8.0.0_all.deb ...
Unpacking media-types (8.0.0) ...
Selecting previously unselected package libmpdec3:amd64.
Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ...
Unpacking libmpdec3:amd64 (2.5.1-2) ...
Selecting previously unselected package libncursesw6:amd64.
Preparing to unpack .../3-libncursesw6_6.3+20220423-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.3+20220423-2) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.2-1.2_all.deb ...
Unpacking readline-common (8.2-1.2) ...
Selecting previously unselected package libreadline8:amd64.
Preparing to unpack .../5-libreadline8_8.2-1.2_amd64.deb ...
Unpacking libreadline8:amd64 (8.2-1.2) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../6-libsqlite3-0_3.40.0-1_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.40.0-1) ...
Selecting previously unselected package libpython3.10-stdlib:amd64.
Preparing to unpack .../7-libpython3.10-stdlib_3.10.8-3_amd64.deb ...
Unpacking libpython3.10-stdlib:amd64 (3.10.8-3) ...
Selecting previously unselected package python3.10.
Preparing to unpack .../8-python3.10_3.10.8-3_amd64.deb ...
Unpacking python3.10 (3.10.8-3) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../9-libpython3-stdlib_3.10.6-3_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.10.6-3) ...
Setting up python3-minimal (3.10.6-3) ...
Selecting previously unselected package python3.
(Reading database ... 16436 files and directories currently installed.)
Preparing to unpack .../000-python3_3.10.6-3_amd64.deb ...
Unpacking python3 (3.10.6-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ...
Unpacking libmagic-mgc (1:5.41-4) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.41-4) ...
Selecting previously unselected package file.
Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ...
Unpacking file (1:5.41-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../005-gettext-base_0.21-10_amd64.deb ...
Unpacking gettext-base (0.21-10) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../007-groff-base_1.22.4-9_amd64.deb ...
Unpacking groff-base (1.22.4-9) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../008-bsdextrautils_2.38.1-4_amd64.deb ...
Unpacking bsdextrautils (2.38.1-4) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../009-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../010-man-db_2.11.1-1_amd64.deb ...
Unpacking man-db (2.11.1-1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../011-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package m4.
Preparing to unpack .../012-m4_1.4.19-1_amd64.deb ...
Unpacking m4 (1.4.19-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../013-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.21-10_all.deb ...
Unpacking autopoint (0.21-10) ...
Selecting previously unselected package binutils-arm-linux-gnueabi.
Preparing to unpack .../017-binutils-arm-linux-gnueabi_2.39-8_amd64.deb ...
Unpacking binutils-arm-linux-gnueabi (2.39-8) ...
Selecting previously unselected package gcc-12-arm-linux-gnueabi-base:amd64.
Preparing to unpack .../018-gcc-12-arm-linux-gnueabi-base_12.2.0-9cross2_amd64.deb ...
Unpacking gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-9cross2) ...
Selecting previously unselected package cpp-12-arm-linux-gnueabi.
Preparing to unpack .../019-cpp-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ...
Unpacking cpp-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Selecting previously unselected package cpp-arm-linux-gnueabi.
Preparing to unpack .../020-cpp-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ...
Unpacking cpp-arm-linux-gnueabi (4:12.2.0-1) ...
Selecting previously unselected package cross-config.
Preparing to unpack .../021-cross-config_2.6.19_all.deb ...
Unpacking cross-config (2.6.19) ...
Selecting previously unselected package gcc-12-cross-base.
Preparing to unpack .../022-gcc-12-cross-base_12.2.0-9cross2_all.deb ...
Unpacking gcc-12-cross-base (12.2.0-9cross2) ...
Selecting previously unselected package libc6-armel-cross.
Preparing to unpack .../023-libc6-armel-cross_2.36-3cross1_all.deb ...
Unpacking libc6-armel-cross (2.36-3cross1) ...
Selecting previously unselected package libgcc-s1-armel-cross.
Preparing to unpack .../024-libgcc-s1-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libgcc-s1-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libgomp1-armel-cross.
Preparing to unpack .../025-libgomp1-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libgomp1-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libatomic1-armel-cross.
Preparing to unpack .../026-libatomic1-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libatomic1-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libasan8-armel-cross.
Preparing to unpack .../027-libasan8-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libasan8-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libstdc++6-armel-cross.
Preparing to unpack .../028-libstdc++6-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libstdc++6-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libubsan1-armel-cross.
Preparing to unpack .../029-libubsan1-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libubsan1-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package libgcc-12-dev-armel-cross.
Preparing to unpack .../030-libgcc-12-dev-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libgcc-12-dev-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package gcc-12-arm-linux-gnueabi.
Preparing to unpack .../031-gcc-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ...
Unpacking gcc-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Selecting previously unselected package gcc-arm-linux-gnueabi.
Preparing to unpack .../032-gcc-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ...
Unpacking gcc-arm-linux-gnueabi (4:12.2.0-1) ...
Selecting previously unselected package linux-libc-dev-armel-cross.
Preparing to unpack .../033-linux-libc-dev-armel-cross_6.0.6-2cross1_all.deb ...
Unpacking linux-libc-dev-armel-cross (6.0.6-2cross1) ...
Selecting previously unselected package libc6-dev-armel-cross.
Preparing to unpack .../034-libc6-dev-armel-cross_2.36-3cross1_all.deb ...
Unpacking libc6-dev-armel-cross (2.36-3cross1) ...
Selecting previously unselected package libstdc++-12-dev-armel-cross.
Preparing to unpack .../035-libstdc++-12-dev-armel-cross_12.2.0-9cross2_all.deb ...
Unpacking libstdc++-12-dev-armel-cross (12.2.0-9cross2) ...
Selecting previously unselected package g++-12-arm-linux-gnueabi.
Preparing to unpack .../036-g++-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ...
Unpacking g++-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Selecting previously unselected package g++-arm-linux-gnueabi.
Preparing to unpack .../037-g++-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ...
Unpacking g++-arm-linux-gnueabi (4:12.2.0-1) ...
Selecting previously unselected package libconfig-inifiles-perl.
Preparing to unpack .../038-libconfig-inifiles-perl_3.000003-1_all.deb ...
Unpacking libconfig-inifiles-perl (3.000003-1) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../039-libio-string-perl_1.08-3.1_all.deb ...
Unpacking libio-string-perl (1.08-3.1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../040-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../041-libxml2_2.9.14+dfsg-1.1+b2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../042-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../043-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../044-libxml-sax-perl_1.02+dfsg-3_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-3) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../045-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1_amd64.deb ...
Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
Selecting previously unselected package libxml-simple-perl.
Preparing to unpack .../046-libxml-simple-perl_2.25-1_all.deb ...
Unpacking libxml-simple-perl (2.25-1) ...
Selecting previously unselected package libyaml-perl.
Preparing to unpack .../047-libyaml-perl_1.30-2_all.deb ...
Unpacking libyaml-perl (1.30-2) ...
Selecting previously unselected package libconfig-auto-perl.
Preparing to unpack .../048-libconfig-auto-perl_0.44-2_all.deb ...
Unpacking libconfig-auto-perl (0.44-2) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../049-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libfile-homedir-perl.
Preparing to unpack .../050-libfile-homedir-perl_1.006-1_all.deb ...
Unpacking libfile-homedir-perl (1.006-1) ...
Selecting previously unselected package libdebian-dpkgcross-perl.
Preparing to unpack .../051-libdebian-dpkgcross-perl_2.6.19_all.deb ...
Unpacking libdebian-dpkgcross-perl (2.6.19) ...
Selecting previously unselected package dpkg-cross.
Preparing to unpack .../052-dpkg-cross_2.6.19_all.deb ...
Unpacking dpkg-cross (2.6.19) ...
Selecting previously unselected package crossbuild-essential-armel.
Preparing to unpack .../053-crossbuild-essential-armel_12.9_all.deb ...
Unpacking crossbuild-essential-armel (12.9) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../054-libdebhelper-perl_13.11.1_all.deb ...
Unpacking libdebhelper-perl (13.11.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../055-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../056-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../057-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../058-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../059-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../060-dh-strip-nondeterminism_1.13.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.0-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../061-libelf1_0.188-1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../062-dwz_0.14+20220924-2_amd64.deb ...
Unpacking dwz (0.14+20220924-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../063-gettext_0.21-10_amd64.deb ...
Unpacking gettext (0.21-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../064-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../065-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../066-debhelper_13.11.1_all.deb ...
Unpacking debhelper (13.11.1) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../067-python3-lib2to3_3.10.8-1_all.deb ...
Unpacking python3-lib2to3 (3.10.8-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../068-python3-distutils_3.10.8-1_all.deb ...
Unpacking python3-distutils (3.10.8-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../069-dh-python_5.20221122_all.deb ...
Unpacking dh-python (5.20221122) ...
Selecting previously unselected package gcc-11-base:armel.
Preparing to unpack .../070-gcc-11-base_11.3.0-8_armel.deb ...
Unpacking gcc-11-base:armel (11.3.0-8) ...
Selecting previously unselected package gcc-12-base:armel.
Preparing to unpack .../071-gcc-12-base_12.2.0-9_armel.deb ...
Unpacking gcc-12-base:armel (12.2.0-9) ...
Selecting previously unselected package help2man.
Preparing to unpack .../072-help2man_1.49.2_amd64.deb ...
Unpacking help2man (1.49.2) ...
Selecting previously unselected package libgcc-s1:armel.
Preparing to unpack .../073-libgcc-s1_12.2.0-9_armel.deb ...
Unpacking libgcc-s1:armel (12.2.0-9) ...
Selecting previously unselected package libc6:armel.
Preparing to unpack .../074-libc6_2.36-5_armel.deb ...
Unpacking libc6:armel (2.36-5) ...
Selecting previously unselected package libasan6:armel.
Preparing to unpack .../075-libasan6_11.3.0-8_armel.deb ...
Unpacking libasan6:armel (11.3.0-8) ...
Selecting previously unselected package libatomic1:armel.
Preparing to unpack .../076-libatomic1_12.2.0-9_armel.deb ...
Unpacking libatomic1:armel (12.2.0-9) ...
Selecting previously unselected package libstdc++6:armel.
Preparing to unpack .../077-libstdc++6_12.2.0-9_armel.deb ...
Unpacking libstdc++6:armel (12.2.0-9) ...
Selecting previously unselected package zlib1g:armel.
Preparing to unpack .../078-zlib1g_1%3a1.2.13.dfsg-1_armel.deb ...
Unpacking zlib1g:armel (1:1.2.13.dfsg-1) ...
Selecting previously unselected package libbamtools2.5.2:armel.
Preparing to unpack .../079-libbamtools2.5.2_2.5.2+dfsg-2_armel.deb ...
Unpacking libbamtools2.5.2:armel (2.5.2+dfsg-2) ...
Selecting previously unselected package linux-libc-dev:armel.
Preparing to unpack .../080-linux-libc-dev_6.0.10-1_armel.deb ...
Unpacking linux-libc-dev:armel (6.0.10-1) ...
Selecting previously unselected package libcrypt1:armel.
Preparing to unpack .../081-libcrypt1_1%3a4.4.33-1_armel.deb ...
Unpacking libcrypt1:armel (1:4.4.33-1) ...
Selecting previously unselected package libcrypt-dev:armel.
Preparing to unpack .../082-libcrypt-dev_1%3a4.4.33-1_armel.deb ...
Unpacking libcrypt-dev:armel (1:4.4.33-1) ...
Selecting previously unselected package libcom-err2:armel.
Preparing to unpack .../083-libcom-err2_1.46.6~rc1-1+b1_armel.deb ...
Unpacking libcom-err2:armel (1.46.6~rc1-1+b1) ...
Selecting previously unselected package libkrb5support0:armel.
Preparing to unpack .../084-libkrb5support0_1.20.1-1_armel.deb ...
Unpacking libkrb5support0:armel (1.20.1-1) ...
Selecting previously unselected package libk5crypto3:armel.
Preparing to unpack .../085-libk5crypto3_1.20.1-1_armel.deb ...
Unpacking libk5crypto3:armel (1.20.1-1) ...
Selecting previously unselected package libkeyutils1:armel.
Preparing to unpack .../086-libkeyutils1_1.6.3-1_armel.deb ...
Unpacking libkeyutils1:armel (1.6.3-1) ...
Selecting previously unselected package libssl3:armel.
Preparing to unpack .../087-libssl3_3.0.7-1_armel.deb ...
Unpacking libssl3:armel (3.0.7-1) ...
Selecting previously unselected package libkrb5-3:armel.
Preparing to unpack .../088-libkrb5-3_1.20.1-1_armel.deb ...
Unpacking libkrb5-3:armel (1.20.1-1) ...
Selecting previously unselected package libgssapi-krb5-2:armel.
Preparing to unpack .../089-libgssapi-krb5-2_1.20.1-1_armel.deb ...
Unpacking libgssapi-krb5-2:armel (1.20.1-1) ...
Selecting previously unselected package libtirpc3:armel.
Preparing to unpack .../090-libtirpc3_1.3.3+ds-1_armel.deb ...
Unpacking libtirpc3:armel (1.3.3+ds-1) ...
Selecting previously unselected package libnsl2:armel.
Preparing to unpack .../091-libnsl2_1.3.0-2_armel.deb ...
Unpacking libnsl2:armel (1.3.0-2) ...
Selecting previously unselected package libtirpc-dev:armel.
Preparing to unpack .../092-libtirpc-dev_1.3.3+ds-1_armel.deb ...
Unpacking libtirpc-dev:armel (1.3.3+ds-1) ...
Selecting previously unselected package libnsl-dev:armel.
Preparing to unpack .../093-libnsl-dev_1.3.0-2_armel.deb ...
Unpacking libnsl-dev:armel (1.3.0-2) ...
Selecting previously unselected package libc6-dev:armel.
Preparing to unpack .../094-libc6-dev_2.36-5_armel.deb ...
Unpacking libc6-dev:armel (2.36-5) ...
Selecting previously unselected package zlib1g-dev:armel.
Preparing to unpack .../095-zlib1g-dev_1%3a1.2.13.dfsg-1_armel.deb ...
Unpacking zlib1g-dev:armel (1:1.2.13.dfsg-1) ...
Selecting previously unselected package libbamtools-dev:armel.
Preparing to unpack .../096-libbamtools-dev_2.5.2+dfsg-2_armel.deb ...
Unpacking libbamtools-dev:armel (2.5.2+dfsg-2) ...
Selecting previously unselected package libgomp1:armel.
Preparing to unpack .../097-libgomp1_12.2.0-9_armel.deb ...
Unpacking libgomp1:armel (12.2.0-9) ...
Selecting previously unselected package libubsan1:armel.
Preparing to unpack .../098-libubsan1_12.2.0-9_armel.deb ...
Unpacking libubsan1:armel (12.2.0-9) ...
Selecting previously unselected package libgcc-11-dev:armel.
Preparing to unpack .../099-libgcc-11-dev_11.3.0-8_armel.deb ...
Unpacking libgcc-11-dev:armel (11.3.0-8) ...
Selecting previously unselected package libsparsehash-dev.
Preparing to unpack .../100-libsparsehash-dev_2.0.3-2_all.deb ...
Unpacking libsparsehash-dev (2.0.3-2) ...
Selecting previously unselected package libstdc++-11-dev:armel.
Preparing to unpack .../101-libstdc++-11-dev_11.3.0-8_armel.deb ...
Unpacking libstdc++-11-dev:armel (11.3.0-8) ...
Selecting previously unselected package sbuild-build-depends-main-dummy:armel.
Preparing to unpack .../102-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ...
Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ...
Setting up libconfig-inifiles-perl (3.000003-1) ...
Setting up media-types (8.0.0) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up gcc-11-base:armel (11.3.0-8) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up binutils-arm-linux-gnueabi (2.39-8) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up gcc-12-cross-base (12.2.0-9cross2) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.1) ...
Setting up libsqlite3-0:amd64 (3.40.0-1) ...
Setting up libmagic1:amd64 (1:5.41-4) ...
Setting up linux-libc-dev:armel (6.0.10-1) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up libyaml-perl (1.30-2) ...
Setting up libsparsehash-dev (2.0.3-2) ...
Setting up linux-libc-dev-armel-cross (6.0.6-2cross1) ...
Setting up gcc-12-base:armel (12.2.0-9) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-3.1) ...
Setting up autotools-dev (20220109.1) ...
Setting up cross-config (2.6.19) ...
Setting up autopoint (0.21-10) ...
Setting up libncursesw6:amd64 (6.3+20220423-2) ...
Setting up autoconf (2.71-2) ...
Setting up libc6-armel-cross (2.36-3cross1) ...
Setting up sensible-utils (0.0.17) ...
Setting up gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-9cross2) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libmpdec3:amd64 (2.5.1-2) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libc6-dev-armel-cross (2.36-3cross1) ...
Setting up libfile-homedir-perl (1.006-1) ...
Setting up libelf1:amd64 (0.188-1) ...
Setting up cpp-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Setting up readline-common (8.2-1.2) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ...
Setting up liblocale-gettext-perl (1.07-4+b3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-10) ...
Setting up libgomp1-armel-cross (12.2.0-9cross2) ...
Setting up libtool (2.4.7-5) ...
Setting up libreadline8:amd64 (8.2-1.2) ...
Setting up libgcc-s1-armel-cross (12.2.0-9cross2) ...
Setting up libstdc++6-armel-cross (12.2.0-9cross2) ...
Setting up libatomic1-armel-cross (12.2.0-9cross2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.2) ...
Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ...
Setting up dh-autoreconf (20) ...
Setting up cpp-arm-linux-gnueabi (4:12.2.0-1) ...
Setting up libubsan1-armel-cross (12.2.0-9cross2) ...
Setting up ucf (3.0043) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up libpython3-stdlib:amd64 (3.10.6-3) ...
Setting up libasan8-armel-cross (12.2.0-9cross2) ...
Setting up python3.10 (3.10.8-3) ...
Setting up libgcc-12-dev-armel-cross (12.2.0-9cross2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.10.6-3) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gcc-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gcc-arm-linux-gnueabi (4:12.2.0-1) ...
Setting up libstdc++-12-dev-armel-cross (12.2.0-9cross2) ...
Setting up python3-lib2to3 (3.10.8-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20221122) ...
Setting up debhelper (13.11.1) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up g++-12-arm-linux-gnueabi (12.2.0-9cross2) ...
Setting up libconfig-auto-perl (0.44-2) ...
Setting up g++-arm-linux-gnueabi (4:12.2.0-1) ...
Setting up libdebian-dpkgcross-perl (2.6.19) ...
Setting up dpkg-cross (2.6.19) ...
Setting up crossbuild-essential-armel (12.9) ...
Setting up libgcc-s1:armel (12.2.0-9) ...
Setting up libc6:armel (2.36-5) ...
Setting up libstdc++6:armel (12.2.0-9) ...
Setting up libkeyutils1:armel (1.6.3-1) ...
Setting up zlib1g:armel (1:1.2.13.dfsg-1) ...
Setting up libcrypt1:armel (1:4.4.33-1) ...
Setting up libcom-err2:armel (1.46.6~rc1-1+b1) ...
Setting up libgomp1:armel (12.2.0-9) ...
Setting up libasan6:armel (11.3.0-8) ...
Setting up libkrb5support0:armel (1.20.1-1) ...
Setting up libatomic1:armel (12.2.0-9) ...
Setting up libk5crypto3:armel (1.20.1-1) ...
Setting up libbamtools2.5.2:armel (2.5.2+dfsg-2) ...
Setting up libubsan1:armel (12.2.0-9) ...
Setting up libgcc-11-dev:armel (11.3.0-8) ...
Setting up libcrypt-dev:armel (1:4.4.33-1) ...
Setting up libssl3:armel (3.0.7-1) ...
Setting up libkrb5-3:armel (1.20.1-1) ...
Setting up libgssapi-krb5-2:armel (1.20.1-1) ...
Setting up libtirpc3:armel (1.3.3+ds-1) ...
Setting up libtirpc-dev:armel (1.3.3+ds-1) ...
Setting up libnsl2:armel (1.3.0-2) ...
Setting up libnsl-dev:armel (1.3.0-2) ...
Setting up libc6-dev:armel (2.36-5) ...
Setting up libstdc++-11-dev:armel (11.3.0-8) ...
Setting up zlib1g-dev:armel (1:1.2.13.dfsg-1) ...
Setting up libbamtools-dev:armel (2.5.2+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.36-5) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armel included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64)
Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.9 g++-11_11.3.0-8 g++-12_12.2.0-9 gcc-11_11.3.0-8 gcc-12_12.2.0-9 libc6-dev_2.36-5 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 linux-libc-dev_6.0.10-1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-2+b1 binutils_2.39-8 binutils-arm-linux-gnueabi_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-9 cpp-12-arm-linux-gnueabi_12.2.0-9cross2 cpp-arm-linux-gnueabi_4:12.2.0-1 cross-config_2.6.19 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20221122 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9+b1 dpkg-cross_2.6.19 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.30.1-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-9 g++-12-arm-linux-gnueabi_12.2.0-9cross2 g++-arm-linux-gnueabi_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-9 gcc-12-arm-linux-gnueabi_12.2.0-9cross2 gcc-12-arm-linux-gnueabi-base_12.2.0-9cross2 gcc-12-base_12.2.0-9 gcc-12-cross-base_12.2.0-9cross2 gcc-9-base_9.5.0-2+b2 gcc-arm-linux-gnueabi_4:12.2.0-1 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-9 libasan8-armel-cross_12.2.0-9cross2 libatomic1_12.2.0-9 libatomic1-armel-cross_12.2.0-9cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.39-8 libblkid1_2.38.1-4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-5 libc-dev-bin_2.36-5 libc6_2.36-5 libc6-armel-cross_2.36-3cross1 libc6-dev_2.36-5 libc6-dev-armel-cross_2.36-3cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.44-1 libcc1-0_12.2.0-9 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39-8 libctf0_2.39-8 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.1 libdebian-dpkgcross-perl_2.6.19 libdpkg-perl_1.21.9 libelf1_0.188-1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.30.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-9 libgcc-12-dev-armel-cross_12.2.0-9cross2 libgcc-s1_12.2.0-9 libgcc-s1-armel-cross_12.2.0-9cross2 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-9 libgomp1-armel-cross_12.2.0-9cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-9 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-9 liblz4-1_1.9.4-1 liblzma5_5.2.8-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpython3-stdlib_3.10.6-3 libpython3.10-minimal_3.10.8-3 libpython3.10-stdlib_3.10.8-3 libquadmath0_12.2.0-9 libreadline8_8.2-1.2 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b3 libsemanage-common_3.4-1 libsemanage2_3.4-1+b3 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsparsehash-dev_2.0.3-2 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1+b1 libssl3_3.0.7-1 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 libsub-override-perl_0.09-4 libsystemd0_252.1-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-8 libtsan2_12.2.0-9 libubsan1_12.2.0-9 libubsan1-armel-cross_12.2.0-9cross2 libuchardet0_0.0.7-1 libudev1_252.1-1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.10-1 linux-libc-dev-armel-cross_6.0.6-2cross1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 po-debconf_1.0.21+nmu1 python3_3.10.6-3 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.10.6-3 python3.10_3.10.8-3 python3.10-minimal_3.10.8-3 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-7 tar_1.34+dfsg-1.1 tzdata_2022f-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.2.8-0.0 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: sga
Binary: sga
Architecture: any
Version: 0.10.15-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/jts/sga
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/sga
Vcs-Git: https://salsa.debian.org/med-team/sga.git
Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev | libz-dev, libbamtools-dev, help2man, samtools <!nocheck>, python3 <!nocheck>, python3-ruffus <!nocheck>, python3-pysam <!nocheck>
Package-List:
 sga deb science optional arch=any
Checksums-Sha1:
 55b540d2f1cae3a44de8da6db8f413826bdb5f14 6569986 sga_0.10.15.orig.tar.gz
 4598b0bf58446b932f202a8bfa7e9d9d3bc018de 214356 sga_0.10.15-7.debian.tar.xz
Checksums-Sha256:
 1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b 6569986 sga_0.10.15.orig.tar.gz
 708c923249099329004802eb6fe1b549b6421e5d3cf10d81c624db65e381117f 214356 sga_0.10.15-7.debian.tar.xz
Files:
 990aed1593f8072650c6366e5cf32519 6569986 sga_0.10.15.orig.tar.gz
 420c1f46b48f89950ac7e500402215e8 214356 sga_0.10.15-7.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=KU9x
-----END PGP SIGNATURE-----

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0TDfFax8/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 17 14:05:16 2021 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./sga_0.10.15-7.dsc
dpkg-source: info: extracting sga in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking sga_0.10.15.orig.tar.gz
dpkg-source: info: unpacking sga_0.10.15-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0002-no-rpath.patch
dpkg-source: info: applying 0003-do-not-dist-unsup-script.patch
dpkg-source: info: applying 0004-Add-help-to-sga-bam2de.pl.patch
dpkg-source: info: applying 0005-Remove-extensions-on-scripts-we-ship.patch
dpkg-source: info: applying 0006-remove-google-addsense.patch
dpkg-source: info: applying gcc-7.patch
dpkg-source: info: applying no_privacy_breach_url.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying no_enforcing_c++98.patch
dpkg-source: info: applying gcc9.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-69c68e85-1591-4a08-9c43-e17018c4b14b
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package sga
dpkg-buildpackage: info: source version 0.10.15-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
 debian/rules clean
dh clean --with python3 --sourcedirectory=src
   dh_auto_clean -O--sourcedirectory=src
   dh_autoreconf_clean -O--sourcedirectory=src
   dh_clean -O--sourcedirectory=src
 debian/rules binary-arch
dh binary-arch --with python3 --sourcedirectory=src
   dh_update_autotools_config -a -O--sourcedirectory=src
   dh_autoreconf -a -O--sourcedirectory=src
configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete.
configure.ac:7: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:7: the top level
configure.ac:24: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:24: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
m4/m4_ax_openmp.m4:70: AX_OPENMP is expanded from...
configure.ac:24: the top level
configure.ac:12: installing './compile'
configure.ac:5: installing './install-sh'
configure.ac:5: installing './missing'
Algorithm/Makefile.am: installing './depcomp'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-bamtools=/usr/
	cd src && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-bamtools=/usr/
configure: loading site script /etc/dpkg-cross/cross-config.armel
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether arm-linux-gnueabi-g++ accepts -g... yes
checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of arm-linux-gnueabi-g++... none
checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc
checking whether the compiler supports GNU C... yes
checking whether arm-linux-gnueabi-gcc accepts -g... yes
checking for arm-linux-gnueabi-gcc option to enable C11 features... none needed
checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes
checking dependency style of arm-linux-gnueabi-gcc... none
checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for zlib.h... yes
checking for library containing gzopen... -lz
checking for library containing clock_gettime... none required
checking for OpenMP flag of C++ compiler... -fopenmp
checking for host type... you are not using osx so multi-threading should work.
checking for google/sparse_hash_set... yes
checking for google/sparse_hash_set... (cached) yes
checking for google/sparse_hash_map... yes
checking for unordered_map... yes
checking for tr1/unordered_map... yes
checking for ext/hash_map... yes
checking for unordered_set... yes
checking for tr1/unordered_set... yes
checking for ext/hash_set... yes
checking for api/BamReader.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bin/Makefile
config.status: creating Thirdparty/Makefile
config.status: creating Util/Makefile
config.status: creating SQG/Makefile
config.status: creating Bigraph/Makefile
config.status: creating Algorithm/Makefile
config.status: creating StringGraph/Makefile
config.status: creating Concurrency/Makefile
config.status: creating SuffixTools/Makefile
config.status: creating GraphDiff/Makefile
config.status: creating Scaffold/Makefile
config.status: creating SGA/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--sourcedirectory=src
	cd src && make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make  all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
Making all in bin
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/bin'
cp -n sga-bam2de.pl sga-bam2de
cp -n sga-mergeDriver.pl sga-mergeDriver
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/bin'
Making all in Thirdparty
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Thirdparty'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gzstream.o gzstream.C
arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools  -std=gnu99 -O3 -c -o stdaln.o stdaln.c
stdaln.c: In function ‘aln_local_core’:
stdaln.c:756:17: warning: ‘free’ called on pointer ‘*(int **)((char *)(void *) ivtmp.728_209)’ with nonzero offset 4 [-Wfree-nonheap-object]
  756 |                 free(s_array[i]);
      |                 ^~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o overlapper.o overlapper.cpp
overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s1_start’ [-Wmissing-field-initializers]
   37 | OverlapperParams default_params = { 2, -6, -3, -2, ALT_OVERLAP };
      |                                                                ^
overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s1_end’ [-Wmissing-field-initializers]
overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s2_start’ [-Wmissing-field-initializers]
overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s2_end’ [-Wmissing-field-initializers]
overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::use_m_ops’ [-Wmissing-field-initializers]
overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s1_start’ [-Wmissing-field-initializers]
   38 | OverlapperParams ungapped_params = { 2, -10000, -3, -2, ALT_OVERLAP };
      |                                                                     ^
overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s1_end’ [-Wmissing-field-initializers]
overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s2_start’ [-Wmissing-field-initializers]
overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s2_end’ [-Wmissing-field-initializers]
overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::use_m_ops’ [-Wmissing-field-initializers]
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o multiple_alignment.o multiple_alignment.cpp
arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools  -std=gnu99 -O3 -c -o bcr.o bcr.c
bcr.c: In function ‘ld_restore’:
bcr.c:183:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |         fread(&ld->max, sizeof(int), 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bcr.c:186:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |                 fread(&x, sizeof(int), 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bcr.c:189:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |                         fread(ld->a[i], 8, x, fp);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MurmurHash3.o MurmurHash3.cpp
MurmurHash3.cpp: In function ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’:
MurmurHash3.cpp:132:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
  132 |   case 3: k1 ^= tail[2] << 16;
      |           ~~~^~~~~~~~~~~~~~~~
MurmurHash3.cpp:133:3: note: here
  133 |   case 2: k1 ^= tail[1] << 8;
      |   ^~~~
MurmurHash3.cpp:133:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
  133 |   case 2: k1 ^= tail[1] << 8;
      |           ~~~^~~~~~~~~~~~~~~
MurmurHash3.cpp:134:3: note: here
  134 |   case 1: k1 ^= tail[0];
      |   ^~~~
MurmurHash3.cpp: In function ‘void MurmurHash3_x86_128(const void*, int, uint32_t, void*)’:
MurmurHash3.cpp:207:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  207 |   case 15: k4 ^= tail[14] << 16;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:208:3: note: here
  208 |   case 14: k4 ^= tail[13] << 8;
      |   ^~~~
MurmurHash3.cpp:208:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  208 |   case 14: k4 ^= tail[13] << 8;
      |            ~~~^~~~~~~~~~~~~~~~
MurmurHash3.cpp:209:3: note: here
  209 |   case 13: k4 ^= tail[12] << 0;
      |   ^~~~
MurmurHash3.cpp:210:56: warning: this statement may fall through [-Wimplicit-fallthrough=]
  210 |            k4 *= c4; k4  = ROTL32(k4,18); k4 *= c1; h4 ^= k4;
      |                                                     ~~~^~~~~
MurmurHash3.cpp:212:3: note: here
  212 |   case 12: k3 ^= tail[11] << 24;
      |   ^~~~
MurmurHash3.cpp:212:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  212 |   case 12: k3 ^= tail[11] << 24;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:213:3: note: here
  213 |   case 11: k3 ^= tail[10] << 16;
      |   ^~~~
MurmurHash3.cpp:213:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  213 |   case 11: k3 ^= tail[10] << 16;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:214:3: note: here
  214 |   case 10: k3 ^= tail[ 9] << 8;
      |   ^~~~
MurmurHash3.cpp:214:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  214 |   case 10: k3 ^= tail[ 9] << 8;
      |            ~~~^~~~~~~~~~~~~~~~
MurmurHash3.cpp:215:3: note: here
  215 |   case  9: k3 ^= tail[ 8] << 0;
      |   ^~~~
MurmurHash3.cpp:216:56: warning: this statement may fall through [-Wimplicit-fallthrough=]
  216 |            k3 *= c3; k3  = ROTL32(k3,17); k3 *= c4; h3 ^= k3;
      |                                                     ~~~^~~~~
MurmurHash3.cpp:218:3: note: here
  218 |   case  8: k2 ^= tail[ 7] << 24;
      |   ^~~~
MurmurHash3.cpp:218:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  218 |   case  8: k2 ^= tail[ 7] << 24;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:219:3: note: here
  219 |   case  7: k2 ^= tail[ 6] << 16;
      |   ^~~~
MurmurHash3.cpp:219:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  219 |   case  7: k2 ^= tail[ 6] << 16;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:220:3: note: here
  220 |   case  6: k2 ^= tail[ 5] << 8;
      |   ^~~~
MurmurHash3.cpp:220:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  220 |   case  6: k2 ^= tail[ 5] << 8;
      |            ~~~^~~~~~~~~~~~~~~~
MurmurHash3.cpp:221:3: note: here
  221 |   case  5: k2 ^= tail[ 4] << 0;
      |   ^~~~
MurmurHash3.cpp:222:56: warning: this statement may fall through [-Wimplicit-fallthrough=]
  222 |            k2 *= c2; k2  = ROTL32(k2,16); k2 *= c3; h2 ^= k2;
      |                                                     ~~~^~~~~
MurmurHash3.cpp:224:3: note: here
  224 |   case  4: k1 ^= tail[ 3] << 24;
      |   ^~~~
MurmurHash3.cpp:224:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  224 |   case  4: k1 ^= tail[ 3] << 24;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:225:3: note: here
  225 |   case  3: k1 ^= tail[ 2] << 16;
      |   ^~~~
MurmurHash3.cpp:225:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  225 |   case  3: k1 ^= tail[ 2] << 16;
      |            ~~~^~~~~~~~~~~~~~~~~
MurmurHash3.cpp:226:3: note: here
  226 |   case  2: k1 ^= tail[ 1] << 8;
      |   ^~~~
MurmurHash3.cpp:226:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  226 |   case  2: k1 ^= tail[ 1] << 8;
      |            ~~~^~~~~~~~~~~~~~~~
MurmurHash3.cpp:227:3: note: here
  227 |   case  1: k1 ^= tail[ 0] << 0;
      |   ^~~~
MurmurHash3.cpp: In function ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’:
MurmurHash3.cpp:296:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  296 |   case 15: k2 ^= uint64_t(tail[14]) << 48;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:297:3: note: here
  297 |   case 14: k2 ^= uint64_t(tail[13]) << 40;
      |   ^~~~
MurmurHash3.cpp:297:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  297 |   case 14: k2 ^= uint64_t(tail[13]) << 40;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:298:3: note: here
  298 |   case 13: k2 ^= uint64_t(tail[12]) << 32;
      |   ^~~~
MurmurHash3.cpp:298:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  298 |   case 13: k2 ^= uint64_t(tail[12]) << 32;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:299:3: note: here
  299 |   case 12: k2 ^= uint64_t(tail[11]) << 24;
      |   ^~~~
MurmurHash3.cpp:299:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  299 |   case 12: k2 ^= uint64_t(tail[11]) << 24;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:300:3: note: here
  300 |   case 11: k2 ^= uint64_t(tail[10]) << 16;
      |   ^~~~
MurmurHash3.cpp:300:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  300 |   case 11: k2 ^= uint64_t(tail[10]) << 16;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:301:3: note: here
  301 |   case 10: k2 ^= uint64_t(tail[ 9]) << 8;
      |   ^~~~
MurmurHash3.cpp:301:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  301 |   case 10: k2 ^= uint64_t(tail[ 9]) << 8;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:302:3: note: here
  302 |   case  9: k2 ^= uint64_t(tail[ 8]) << 0;
      |   ^~~~
MurmurHash3.cpp:303:56: warning: this statement may fall through [-Wimplicit-fallthrough=]
  303 |            k2 *= c2; k2  = ROTL64(k2,33); k2 *= c1; h2 ^= k2;
      |                                                     ~~~^~~~~
MurmurHash3.cpp:305:3: note: here
  305 |   case  8: k1 ^= uint64_t(tail[ 7]) << 56;
      |   ^~~~
MurmurHash3.cpp:305:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  305 |   case  8: k1 ^= uint64_t(tail[ 7]) << 56;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:306:3: note: here
  306 |   case  7: k1 ^= uint64_t(tail[ 6]) << 48;
      |   ^~~~
MurmurHash3.cpp:306:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  306 |   case  7: k1 ^= uint64_t(tail[ 6]) << 48;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:307:3: note: here
  307 |   case  6: k1 ^= uint64_t(tail[ 5]) << 40;
      |   ^~~~
MurmurHash3.cpp:307:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  307 |   case  6: k1 ^= uint64_t(tail[ 5]) << 40;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:308:3: note: here
  308 |   case  5: k1 ^= uint64_t(tail[ 4]) << 32;
      |   ^~~~
MurmurHash3.cpp:308:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  308 |   case  5: k1 ^= uint64_t(tail[ 4]) << 32;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:309:3: note: here
  309 |   case  4: k1 ^= uint64_t(tail[ 3]) << 24;
      |   ^~~~
MurmurHash3.cpp:309:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  309 |   case  4: k1 ^= uint64_t(tail[ 3]) << 24;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:310:3: note: here
  310 |   case  3: k1 ^= uint64_t(tail[ 2]) << 16;
      |   ^~~~
MurmurHash3.cpp:310:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |   case  3: k1 ^= uint64_t(tail[ 2]) << 16;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:311:3: note: here
  311 |   case  2: k1 ^= uint64_t(tail[ 1]) << 8;
      |   ^~~~
MurmurHash3.cpp:311:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  311 |   case  2: k1 ^= uint64_t(tail[ 1]) << 8;
      |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
MurmurHash3.cpp:312:3: note: here
  312 |   case  1: k1 ^= uint64_t(tail[ 0]) << 0;
      |   ^~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o count_min_sketch.o count_min_sketch.cpp
rm -f libthirdparty.a
ar cru libthirdparty.a gzstream.o stdaln.o overlapper.o multiple_alignment.o bcr.o MurmurHash3.o count_min_sketch.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libthirdparty.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Thirdparty'
Making all in Util
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Util.o `test -f 'Util.cpp' || echo './'`Util.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Alphabet.o `test -f 'Alphabet.cpp' || echo './'`Alphabet.cpp
Alphabet.cpp:101:84: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow]
  101 | template<> const size_t AlphaCount64::maxValue = std::numeric_limits<uint64_t>::max();
      |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Contig.o `test -f 'Contig.cpp' || echo './'`Contig.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ReadTable.o `test -f 'ReadTable.cpp' || echo './'`ReadTable.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ReadInfoTable.o `test -f 'ReadInfoTable.cpp' || echo './'`ReadInfoTable.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SeqReader.o `test -f 'SeqReader.cpp' || echo './'`SeqReader.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-DNAString.o `test -f 'DNAString.cpp' || echo './'`DNAString.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Match.o `test -f 'Match.cpp' || echo './'`Match.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Pileup.o `test -f 'Pileup.cpp' || echo './'`Pileup.cpp
In file included from Pileup.h:12,
                 from Pileup.cpp:10:
Pileup.cpp: In member function ‘DNADouble Pileup::calculateSimpleAlphaProb() const’:
Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \
      |                                                     ^~
Pileup.cpp:46:5: note: in expansion of macro ‘WARN_ONCE’
   46 |     WARN_ONCE("Fix Pileup::calculateSimpleDNADouble numerical stability");
      |     ^~~~~~~~~
Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   33 |                      printf("WARNING: [%s]\n", (x)); _warn_once = false;
      |                                                      ^~~~~~~~~~
Pileup.cpp:46:5: note: in expansion of macro ‘WARN_ONCE’
   46 |     WARN_ONCE("Fix Pileup::calculateSimpleDNADouble numerical stability");
      |     ^~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BitChar.o `test -f 'BitChar.cpp' || echo './'`BitChar.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Interval.o `test -f 'Interval.cpp' || echo './'`Interval.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SeqCoord.o `test -f 'SeqCoord.cpp' || echo './'`SeqCoord.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-MultiOverlap.o `test -f 'MultiOverlap.cpp' || echo './'`MultiOverlap.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from Util.h:12,
                 from Match.h:13,
                 from MultiOverlap.h:13,
                 from MultiOverlap.cpp:13:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MultiOverlap::MOData&}; _Tp = MultiOverlap::MOData; _Alloc = std::allocator<MultiOverlap::MOData>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<MultiOverlap::MOData>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MultiOverlap::MOData; _Alloc = std::allocator<MultiOverlap::MOData>]’,
    inlined from ‘void MultiOverlap::add(const std::string&, const Overlap&)’ at MultiOverlap.cpp:46:25:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MultiOverlap::MOData; _Alloc = std::allocator<MultiOverlap::MOData>]’,
    inlined from ‘void MultiOverlap::add(const MOData&)’ at MultiOverlap.cpp:53:25:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const AlphaCount<long long unsigned int>&}; _Tp = AlphaCount<long long unsigned int>; _Alloc = std::allocator<AlphaCount<long long unsigned int> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<AlphaCount<long long unsigned int> >::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {PUElem}; _Tp = PUElem; _Alloc = std::allocator<PUElem>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<PUElem>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {PUElem}; _Tp = PUElem; _Alloc = std::allocator<PUElem>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PUElem*, std::vector<PUElem> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from MultiOverlap.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Distance = int; _Tp = MultiOverlap::MOData; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
  340 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’,
    inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1900:25,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1916:27:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1629 |       std::__make_heap(__first, __middle, __comp);
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘void MultiOverlap::print(int, int)’ at MultiOverlap.cpp:591:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<MultiOverlap::MOData*, vector<MultiOverlap::MOData> >; _Compare = bool (*)(const MultiOverlap::MOData&, const MultiOverlap::MOData&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘void MultiOverlap::print(int, int)’ at MultiOverlap.cpp:591:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MultiOverlap::MOData*, std::vector<MultiOverlap::MOData> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = AlphaCount<long long unsigned int>; _Alloc = std::allocator<AlphaCount<long long unsigned int> >]’,
    inlined from ‘std::string MultiOverlap::consensusConflict(double, int)’ at MultiOverlap.cpp:181:24:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlphaCount<long long unsigned int>*, std::vector<AlphaCount<long long unsigned int> > >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-QualityVector.o `test -f 'QualityVector.cpp' || echo './'`QualityVector.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from QualityVector.h:13,
                 from QualityVector.cpp:13:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const DNADouble&}; _Tp = DNADouble; _Alloc = std::allocator<DNADouble>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DNADouble>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DNADouble; _Alloc = std::allocator<DNADouble>]’,
    inlined from ‘void QualityVector::add(DNADouble)’ at QualityVector.cpp:33:21:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DNADouble*, std::vector<DNADouble> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SGAStats.o `test -f 'SGAStats.cpp' || echo './'`SGAStats.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Quality.o `test -f 'Quality.cpp' || echo './'`Quality.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from Quality.h:13,
                 from Quality.cpp:9:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘DoubleVector Quality::uniformLogProbVector(double, size_t)’ at Quality.cpp:18:21:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-PrimerScreen.o `test -f 'PrimerScreen.cpp' || echo './'`PrimerScreen.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BitVector.o `test -f 'BitVector.cpp' || echo './'`BitVector.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-CorrectionThresholds.o `test -f 'CorrectionThresholds.cpp' || echo './'`CorrectionThresholds.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-KmerDistribution.o `test -f 'KmerDistribution.cpp' || echo './'`KmerDistribution.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ClusterReader.o `test -f 'ClusterReader.cpp' || echo './'`ClusterReader.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-MultiAlignment.o `test -f 'MultiAlignment.cpp' || echo './'`MultiAlignment.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-StdAlnTools.o `test -f 'StdAlnTools.cpp' || echo './'`StdAlnTools.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-VCFUtil.o `test -f 'VCFUtil.cpp' || echo './'`VCFUtil.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:63,
                 from VCFUtil.h:14,
                 from VCFUtil.cpp:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, vector<VCFRecord> >; _ForwardIterator = VCFRecord*]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const VCFRecord&}; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<VCFRecord>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’,
    inlined from ‘VCFReturnCode VCFUtil::generateVCFFromCancerVariant(const std::string&, const std::string&, const std::string&, const std::string&, size_t, const std::string&, int, double, int, VCFVector&)’ at VCFUtil.cpp:385:38:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _ForwardIterator = VCFRecord*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, vector<VCFRecord> >; _ForwardIterator = VCFRecord*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, vector<VCFRecord> >; _ForwardIterator = VCFRecord*; _Tp = VCFRecord]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:769:34,
    inlined from ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:19,
    inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; <template-parameter-2-2> = void; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1481:22,
    inlined from ‘VCFReturnCode VCFUtil::generateVCFFromCancerVariant(const std::string&, const std::string&, const std::string&, const std::string&, size_t, const std::string&, int, double, int, VCFVector&)’ at VCFUtil.cpp:398:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _ForwardIterator = VCFRecord*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, vector<VCFRecord> >; _ForwardIterator = VCFRecord*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, vector<VCFRecord> >; _ForwardIterator = VCFRecord*; _Tp = VCFRecord]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:796:38,
    inlined from ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:19,
    inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >; <template-parameter-2-2> = void; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1481:22,
    inlined from ‘VCFReturnCode VCFUtil::generateVCFFromCancerVariant(const std::string&, const std::string&, const std::string&, const std::string&, size_t, const std::string&, int, double, int, VCFVector&)’ at VCFUtil.cpp:398:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-QualityTable.o `test -f 'QualityTable.cpp' || echo './'`QualityTable.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BloomFilter.o `test -f 'BloomFilter.cpp' || echo './'`BloomFilter.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-VariantIndex.o `test -f 'VariantIndex.cpp' || echo './'`VariantIndex.cpp
rm -f libutil.a
ar cru libutil.a libutil_a-Util.o libutil_a-Alphabet.o libutil_a-Contig.o libutil_a-ReadTable.o libutil_a-ReadInfoTable.o libutil_a-SeqReader.o libutil_a-DNAString.o libutil_a-Match.o libutil_a-Pileup.o libutil_a-BitChar.o libutil_a-Interval.o libutil_a-SeqCoord.o libutil_a-MultiOverlap.o libutil_a-QualityVector.o libutil_a-SGAStats.o libutil_a-Quality.o libutil_a-PrimerScreen.o libutil_a-BitVector.o libutil_a-CorrectionThresholds.o libutil_a-KmerDistribution.o libutil_a-ClusterReader.o libutil_a-MultiAlignment.o libutil_a-StdAlnTools.o libutil_a-VCFUtil.o libutil_a-QualityTable.o libutil_a-BloomFilter.o libutil_a-VariantIndex.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libutil.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
Making all in SQG
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SQG'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -I../Util -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsqg_a-SQG.o `test -f 'SQG.cpp' || echo './'`SQG.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Thirdparty -I../Util -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsqg_a-ASQG.o `test -f 'ASQG.cpp' || echo './'`ASQG.cpp
rm -f libsqg.a
ar cru libsqg.a libsqg_a-SQG.o libsqg_a-ASQG.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libsqg.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SQG'
Making all in Bigraph
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Bigraph'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Bigraph.o `test -f 'Bigraph.cpp' || echo './'`Bigraph.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Vertex.o `test -f 'Vertex.cpp' || echo './'`Vertex.cpp
In file included from ../Util/EncodedString.h:22,
                 from Vertex.h:23,
                 from Vertex.cpp:9:
../Util/EncodedString.h: In instantiation of ‘void EncodedString<Codec>::_copy(const EncodedString<Codec>&) [with Codec = DNACodec]’:
../Util/EncodedString.h:43:18:   required from ‘EncodedString<Codec>::EncodedString(const EncodedString<Codec>&) [with Codec = DNACodec]’
/usr/arm-linux-gnueabi/include/c++/12/bits/move.h:204:11:   required from ‘std::_Require<std::__not_<std::__is_tuple_like<_Tp> >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = EncodedString<DNACodec>; _Require<__not_<__is_tuple_like<_Tp> >, is_move_constructible<_Tp>, is_move_assignable<_Tp> > = void]’
Vertex.cpp:46:18:   required from here
../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  236 |             assert(m_capacity = other.m_capacity);
      |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Edge.o `test -f 'Edge.cpp' || echo './'`Edge.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-EdgeDesc.o `test -f 'EdgeDesc.cpp' || echo './'`EdgeDesc.cpp
rm -f libbigraph.a
ar cru libbigraph.a libbigraph_a-Bigraph.o libbigraph_a-Vertex.o libbigraph_a-Edge.o libbigraph_a-EdgeDesc.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libbigraph.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Bigraph'
Making all in Algorithm
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Algorithm'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapAlgorithm.o `test -f 'OverlapAlgorithm.cpp' || echo './'`OverlapAlgorithm.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/list:64,
                 from ../Util/Util.h:13,
                 from ../Util/Alphabet.h:29,
                 from ../SuffixTools/STGlobals.h:19,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from OverlapAlgorithm.h:13,
                 from OverlapAlgorithm.cpp:6:
/usr/arm-linux-gnueabi/include/c++/12/bits/list.tcc: In member function ‘std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = std::_List_iterator<OverlapBlock>; <template-parameter-2-2> = void; _Tp = OverlapBlock; _Alloc = std::allocator<OverlapBlock>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/list.tcc:133:7: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::const_iterator’ changed in GCC 7.1
  133 |       list<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/list.tcc:133:7: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/list.tcc:133:7: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
OverlapAlgorithm.cpp: In member function ‘OverlapResult OverlapAlgorithm::overlapReadExact(const SeqRecord&, int, OverlapBlockList*) const’:
OverlapAlgorithm.cpp:150:24: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::const_iterator’ changed in GCC 7.1
  150 |     oblSuffixFwd.insert(oblSuffixFwd.end(), oblFwdContain.begin(), oblFwdContain.end());
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OverlapAlgorithm.cpp:150:24: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
OverlapAlgorithm.cpp:151:24: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::const_iterator’ changed in GCC 7.1
  151 |     oblPrefixFwd.insert(oblPrefixFwd.end(), oblFwdContain.begin(), oblFwdContain.end());
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OverlapAlgorithm.cpp:151:24: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
OverlapAlgorithm.cpp:152:24: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::const_iterator’ changed in GCC 7.1
  152 |     oblSuffixRev.insert(oblSuffixRev.end(), oblRevContain.begin(), oblRevContain.end());
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OverlapAlgorithm.cpp:152:24: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
OverlapAlgorithm.cpp:153:24: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::const_iterator’ changed in GCC 7.1
  153 |     oblPrefixRev.insert(oblPrefixRev.end(), oblRevContain.begin(), oblRevContain.end());
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OverlapAlgorithm.cpp:153:24: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Distance = int; _Tp = SearchSeed; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../SuffixTools/STGlobals.h:13:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SearchSeed&}; _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<SearchSeed>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘int OverlapAlgorithm::createSearchSeeds(const std::string&, const BWT*, const BWT*, int, int, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:522:30,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:324:22:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedsExactRight(const std::string&, const BWT*, const BWT*, ExtendDirection, const SearchSeedVector*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:584:34,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:325:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedInexactRight(SearchSeed&, const std::string&, const BWT*, const BWT*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:597:30,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:384:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedInexactRight(SearchSeed&, const std::string&, const BWT*, const BWT*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:608:34,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:384:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedInexactRight(SearchSeed&, const std::string&, const BWT*, const BWT*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:630:38,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:384:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedInexactLeft(SearchSeed&, const std::string&, const BWT*, const BWT*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:651:38,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:386:38:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SearchSeed; _Alloc = std::allocator<SearchSeed>]’,
    inlined from ‘void OverlapAlgorithm::extendSeedInexactLeft(SearchSeed&, const std::string&, const BWT*, const BWT*, SearchSeedVector*) const’ at OverlapAlgorithm.cpp:677:42,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:386:38:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = bool (*)(const SearchSeed&, const SearchSeed&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:398:22:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const SearchSeed&, const SearchSeed&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<SearchSeed*, vector<SearchSeed> >; _Compare = bool (*)(const SearchSeed&, const SearchSeed&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘bool OverlapAlgorithm::findOverlapBlocksInexact(const std::string&, const BWT*, const BWT*, const AlignFlags&, int, OverlapBlockList*, OverlapBlockList*, OverlapResult&) const’ at OverlapAlgorithm.cpp:398:22:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SearchSeed*, std::vector<SearchSeed> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-SearchSeed.o `test -f 'SearchSeed.cpp' || echo './'`SearchSeed.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapBlock.o `test -f 'OverlapBlock.cpp' || echo './'`OverlapBlock.cpp
In file included from SearchHistory.h:12,
                 from OverlapBlock.h:15,
                 from OverlapBlock.cpp:11:
OverlapBlock.cpp: In member function ‘std::string OverlapBlock::getFullString(const std::string&) const’:
../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \
      |                                                     ^~
OverlapBlock.cpp:88:9: note: in expansion of macro ‘WARN_ONCE’
   88 |         WARN_ONCE("getFullString() called on block with no history")
      |         ^~~~~~~~~
../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   33 |                      printf("WARNING: [%s]\n", (x)); _warn_once = false;
      |                                                      ^~~~~~~~~~
OverlapBlock.cpp:88:9: note: in expansion of macro ‘WARN_ONCE’
   88 |         WARN_ONCE("getFullString() called on block with no history")
      |         ^~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/list:63,
                 from ../SuffixTools/BWTInterval.h:13,
                 from OverlapBlock.h:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_list.h: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {const OverlapBlock&}; _Tp = OverlapBlock; _Alloc = std::allocator<OverlapBlock>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_list.h:2003:8: note: parameter passing for argument of type ‘std::__cxx11::list<OverlapBlock>::iterator’ changed in GCC 7.1
 2003 |        _M_insert(iterator __position, _Args&&... __args)
      |        ^~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60,
                 from ../SuffixTools/STGlobals.h:15,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from OverlapBlock.h:17:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, long long int>; _KeyOfValue = std::_Select1st<std::pair<const long long int, long long int> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long int> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, long long int>, std::_Select1st<std::pair<const long long int, long long int> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long int> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OverlapBlock; _Alloc = std::allocator<OverlapBlock>]’,
    inlined from ‘OverlapBlockList resolveOverlap(const OverlapBlock&, const OverlapBlock&, const BWT*, const BWT*)’ at OverlapBlock.cpp:243:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<OverlapBlock>’ changed in GCC 7.1
 1306 |       { this->_M_insert(end(), __x); }
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = long long int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long int> >]’,
    inlined from ‘OverlapBlockList resolveOverlap(const OverlapBlock&, const OverlapBlock&, const BWT*, const BWT*)’ at OverlapBlock.cpp:367:57:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, long long int>, std::_Select1st<std::pair<const long long int, long long int> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long int> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = long long int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long int> >]’,
    inlined from ‘OverlapBlockList resolveOverlap(const OverlapBlock&, const OverlapBlock&, const BWT*, const BWT*)’ at OverlapBlock.cpp:370:36:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, long long int>, std::_Select1st<std::pair<const long long int, long long int> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long int> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = long long int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long int> >]’,
    inlined from ‘OverlapBlockList resolveOverlap(const OverlapBlock&, const OverlapBlock&, const BWT*, const BWT*)’ at OverlapBlock.cpp:376:36:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, long long int>, std::_Select1st<std::pair<const long long int, long long int> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long int> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-SearchHistory.o `test -f 'SearchHistory.cpp' || echo './'`SearchHistory.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ErrorCorrectProcess.o `test -f 'ErrorCorrectProcess.cpp' || echo './'`ErrorCorrectProcess.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60,
                 from ../SuffixTools/STGlobals.h:15,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from OverlapAlgorithm.h:13,
                 from ErrorCorrectProcess.h:14,
                 from ErrorCorrectProcess.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, ErrorCount>; _KeyOfValue = std::_Select1st<std::pair<const long long int, ErrorCount> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, ErrorCount> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, ErrorCount>, std::_Select1st<std::pair<const long long int, ErrorCount> >, std::less<long long int>, std::allocator<std::pair<const long long int, ErrorCount> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const char&>, std::tuple<>}; _Key = char; _Val = std::pair<const char, ErrorCount>; _KeyOfValue = std::_Select1st<std::pair<const char, ErrorCount> >; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, ErrorCount> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<char, std::pair<const char, ErrorCount>, std::_Select1st<std::pair<const char, ErrorCount> >, std::less<char>, std::allocator<std::pair<const char, ErrorCount> > >::const_iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ErrorCount>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ErrorCount>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> > >::const_iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = ErrorCount; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementSample(const Key&) [with Key = long long int]’ at ../Util/Metrics.h:32:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:583:42:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, ErrorCount>, std::_Select1st<std::pair<const long long int, ErrorCount> >, std::less<long long int>, std::allocator<std::pair<const long long int, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = ErrorCount; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementSample(const Key&) [with Key = char]’ at ../Util/Metrics.h:32:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:586:45:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<char, std::pair<const char, ErrorCount>, std::_Select1st<std::pair<const char, ErrorCount> >, std::less<char>, std::allocator<std::pair<const char, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = ErrorCount; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementSample(const Key&) [with Key = char]’ at ../Util/Metrics.h:32:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:588:46:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<char, std::pair<const char, ErrorCount>, std::_Select1st<std::pair<const char, ErrorCount> >, std::less<char>, std::allocator<std::pair<const char, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ErrorCount; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementSample(const Key&) [with Key = std::__cxx11::basic_string<char>]’ at ../Util/Metrics.h:32:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:594:50:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ErrorCount>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = ErrorCount; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementError(const Key&) [with Key = long long int]’ at ../Util/Metrics.h:38:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:599:45:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, ErrorCount>, std::_Select1st<std::pair<const long long int, ErrorCount> >, std::less<long long int>, std::allocator<std::pair<const long long int, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = ErrorCount; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementError(const Key&) [with Key = char]’ at ../Util/Metrics.h:38:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:601:48:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<char, std::pair<const char, ErrorCount>, std::_Select1st<std::pair<const char, ErrorCount> >, std::less<char>, std::allocator<std::pair<const char, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = ErrorCount; _Compare = std::less<char>; _Alloc = std::allocator<std::pair<const char, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementError(const Key&) [with Key = char]’ at ../Util/Metrics.h:38:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:602:49:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<char, std::pair<const char, ErrorCount>, std::_Select1st<std::pair<const char, ErrorCount> >, std::less<char>, std::allocator<std::pair<const char, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ErrorCount; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >]’,
    inlined from ‘void ErrorCountMap<Key>::incrementError(const Key&) [with Key = std::__cxx11::basic_string<char>]’ at ../Util/Metrics.h:38:21,
    inlined from ‘void ErrorCorrectPostProcess::collectMetrics(const std::string&, const std::string&, const std::string&)’ at ErrorCorrectProcess.cpp:606:53:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ErrorCount>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ErrorCount> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-QCProcess.o `test -f 'QCProcess.cpp' || echo './'`QCProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapTools.o `test -f 'OverlapTools.cpp' || echo './'`OverlapTools.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-DPAlignment.o `test -f 'DPAlignment.cpp' || echo './'`DPAlignment.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ConnectProcess.o `test -f 'ConnectProcess.cpp' || echo './'`ConnectProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StringGraphGenerator.o `test -f 'StringGraphGenerator.cpp' || echo './'`StringGraphGenerator.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-FMMergeProcess.o `test -f 'FMMergeProcess.cpp' || echo './'`FMMergeProcess.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from FMMergeProcess.h:12,
                 from FMMergeProcess.cpp:9:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BWTInterval&}; _Tp = BWTInterval; _Alloc = std::allocator<BWTInterval>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<BWTInterval>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from OverlapAlgorithm.h:13,
                 from FMMergeProcess.h:13:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Distance = int; _Tp = BWTInterval; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BWTInterval; _Alloc = std::allocator<BWTInterval>]’,
    inlined from ‘FMMergeResult FMMergeProcess::process(const SequenceWorkItem&)’ at FMMergeProcess.cpp:70:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BWTInterval; _Alloc = std::allocator<BWTInterval>]’,
    inlined from ‘FMMergeResult FMMergeProcess::process(const SequenceWorkItem&)’ at FMMergeProcess.cpp:107:47:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = bool (*)(const BWTInterval&, const BWTInterval&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘FMMergeResult FMMergeProcess::process(const SequenceWorkItem&)’ at FMMergeProcess.cpp:148:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const BWTInterval&, const BWTInterval&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<BWTInterval*, vector<BWTInterval> >; _Compare = bool (*)(const BWTInterval&, const BWTInterval&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘FMMergeResult FMMergeProcess::process(const SequenceWorkItem&)’ at FMMergeProcess.cpp:148:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StatsProcess.o `test -f 'StatsProcess.cpp' || echo './'`StatsProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ClusterProcess.o `test -f 'ClusterProcess.cpp' || echo './'`ClusterProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ReadCluster.o `test -f 'ReadCluster.cpp' || echo './'`ReadCluster.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from ReadCluster.h:13,
                 from ReadCluster.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ClusterNode&}; _Tp = ClusterNode; _Alloc = std::allocator<ClusterNode>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ClusterNode>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In constructor ‘ClusterNode::ClusterNode(ClusterNode&&)’,
    inlined from ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’ at ReadCluster.cpp:60:20:
ReadCluster.h:17:8: warning: ‘emptyNode.ClusterNode::fwdCanonicalID’ may be used uninitialized [-Wmaybe-uninitialized]
   17 | struct ClusterNode
      |        ^~~~~~~~~~~
ReadCluster.cpp: In member function ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’:
ReadCluster.cpp:55:25: note: ‘emptyNode.ClusterNode::fwdCanonicalID’ was declared here
   55 |             ClusterNode emptyNode;
      |                         ^~~~~~~~~
In constructor ‘ClusterNode::ClusterNode(ClusterNode&&)’,
    inlined from ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’ at ReadCluster.cpp:60:20:
ReadCluster.h:17:8: warning: ‘emptyNode.ClusterNode::isReverseInterval’ may be used uninitialized [-Wmaybe-uninitialized]
   17 | struct ClusterNode
      |        ^~~~~~~~~~~
ReadCluster.cpp: In member function ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’:
ReadCluster.cpp:55:25: note: ‘emptyNode.ClusterNode::isReverseInterval’ was declared here
   55 |             ClusterNode emptyNode;
      |                         ^~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from OverlapAlgorithm.h:13,
                 from ReadCluster.h:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Distance = int; _Tp = ClusterNode; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = bool (*)(const ClusterNode&, const ClusterNode&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘ClusterNodeVector ReadCluster::getOutput() const’ at ReadCluster.cpp:200:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ClusterNode&, const ClusterNode&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ClusterNode*, vector<ClusterNode> >; _Compare = bool (*)(const ClusterNode&, const ClusterNode&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘ClusterNodeVector ReadCluster::getOutput() const’ at ReadCluster.cpp:200:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ClusterNode; _Alloc = std::allocator<ClusterNode>]’,
    inlined from ‘void ReadCluster::run(size_t, int)’ at ReadCluster.cpp:117:35:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ClusterNode*, std::vector<ClusterNode> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-LRAlignment.o `test -f 'LRAlignment.cpp' || echo './'`LRAlignment.cpp
LRAlignment.cpp: In function ‘void LRAlignment::removeDuplicateCells(LRStackEntry*, LRHash&)’:
LRAlignment.cpp:560:34: warning: left shift count >= width of type [-Wshift-count-overflow]
  560 |                 iter->second = i << 32 | p->G;
      |                                ~~^~~~~
LRAlignment.cpp:566:27: warning: left shift count >= width of type [-Wshift-count-overflow]
  566 |             hash[key] = i << 32 | p->G;
      |                         ~~^~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../SuffixTools/STGlobals.h:13,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from LRAlignment.h:13,
                 from LRAlignment.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector<LRAlignment::LRHit>::iterator’ changed in GCC 7.1
  739 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const LRAlignment::LRCell&}; _Tp = LRAlignment::LRCell; _Alloc = std::allocator<LRAlignment::LRCell>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<LRAlignment::LRCell>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const LRAlignment::LRHit&}; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<LRAlignment::LRHit>::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’,
    inlined from ‘void LRAlignment::saveTerminalHits(const SuffixArray*, const SampledSuffixArray*, const BWT*, LRStackEntry*, int, LRHitVector&)’ at LRAlignment.cpp:468:31:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’,
    inlined from ‘void LRAlignment::saveAllHits(const SuffixArray*, const SampledSuffixArray*, const BWT*, LRStackEntry*, int, LRHitVector&)’ at LRAlignment.cpp:430:27:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Distance = int; _Tp = LRAlignment::LRHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHits(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:760:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHits(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:760:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRCell; _Alloc = std::allocator<LRAlignment::LRCell>]’,
    inlined from ‘void LRAlignment::bwaswAlignment(const std::string&, const BWT*, const SampledSuffixArray*, const LRParams&, LRHitVector&)’ at LRAlignment.cpp:100:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRCell*, std::vector<LRAlignment::LRCell> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRCell; _Alloc = std::allocator<LRAlignment::LRCell>]’,
    inlined from ‘void LRAlignment::bwaswAlignment(const std::string&, const BWT*, const SampledSuffixArray*, const LRParams&, LRHitVector&)’ at LRAlignment.cpp:195:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRCell*, std::vector<LRAlignment::LRCell> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRCell; _Alloc = std::allocator<LRAlignment::LRCell>]’,
    inlined from ‘void LRAlignment::bwaswAlignment(const std::string&, const BWT*, const SampledSuffixArray*, const LRParams&, LRHitVector&)’ at LRAlignment.cpp:231:47:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRCell*, std::vector<LRAlignment::LRCell> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’,
    inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >; <template-parameter-2-2> = void; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1481:22,
    inlined from ‘void LRAlignment::bwaswAlignment(const std::string&, const BWT*, const SampledSuffixArray*, const LRParams&, LRHitVector&)’ at LRAlignment.cpp:259:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<LRAlignment::LRHit>::iterator’ changed in GCC 7.1
 1779 |           _M_range_insert(__pos, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 1780 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’,
    inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >; <template-parameter-2-2> = void; _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1481:22,
    inlined from ‘void LRAlignment::bwaswAlignment(const std::string&, const BWT*, const SampledSuffixArray*, const LRParams&, LRHitVector&)’ at LRAlignment.cpp:264:19:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<LRAlignment::LRHit>::iterator’ changed in GCC 7.1
 1779 |           _M_range_insert(__pos, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 1780 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LRAlignment::LRHit; _Alloc = std::allocator<LRAlignment::LRHit>]’,
    inlined from ‘int LRAlignment::resolveDuplicateHitsByID(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:656:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHitsByID(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:664:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHitsByID(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:664:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHitsByID(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:679:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<LRAlignment::LRHit*, vector<LRAlignment::LRHit> >; _Compare = bool (*)(const LRAlignment::LRHit&, const LRAlignment::LRHit&)]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LRAlignment::resolveDuplicateHitsByID(const BWT*, const SampledSuffixArray*, LRHitVector&, int)’ at LRAlignment.cpp:679:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LRAlignment::LRHit*, std::vector<LRAlignment::LRHit> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StringThreader.o `test -f 'StringThreader.cpp' || echo './'`StringThreader.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ExtensionDP.o `test -f 'ExtensionDP.cpp' || echo './'`ExtensionDP.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-HaplotypeBuilder.o `test -f 'HaplotypeBuilder.cpp' || echo './'`HaplotypeBuilder.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-GapFillProcess.o `test -f 'GapFillProcess.cpp' || echo './'`GapFillProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-VariationBuilderCommon.o `test -f 'VariationBuilderCommon.cpp' || echo './'`VariationBuilderCommon.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-KmerOverlaps.o `test -f 'KmerOverlaps.cpp' || echo './'`KmerOverlaps.cpp
KmerOverlaps.cpp:60:12: warning: width of ‘KmerMatch::index’ exceeds its type
   60 |     size_t index:47;
      |            ^~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Thirdparty/multiple_alignment.h:30,
                 from KmerOverlaps.h:13,
                 from KmerOverlaps.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ApproxSeed&}; _Tp = ApproxSeed; _Alloc = std::allocator<ApproxSeed>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ApproxSeed>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ApproxSeed; _Alloc = std::allocator<ApproxSeed>]’,
    inlined from ‘void _approximateSeededMatch(const std::string&, int, double, int, int, bool, const BWTIndexSet&, SequenceOverlapPairVector&)’ at KmerOverlaps.cpp:371:53:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ApproxSeed*, std::vector<ApproxSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ApproxSeed; _Alloc = std::allocator<ApproxSeed>]’,
    inlined from ‘void _approximateSeededMatch(const std::string&, int, double, int, int, bool, const BWTIndexSet&, SequenceOverlapPairVector&)’ at KmerOverlaps.cpp:384:41:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ApproxSeed*, std::vector<ApproxSeed> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
rm -f libalgorithm.a
ar cru libalgorithm.a libalgorithm_a-OverlapAlgorithm.o libalgorithm_a-SearchSeed.o libalgorithm_a-OverlapBlock.o libalgorithm_a-SearchHistory.o libalgorithm_a-ErrorCorrectProcess.o libalgorithm_a-QCProcess.o libalgorithm_a-OverlapTools.o libalgorithm_a-DPAlignment.o libalgorithm_a-ConnectProcess.o libalgorithm_a-StringGraphGenerator.o libalgorithm_a-FMMergeProcess.o libalgorithm_a-StatsProcess.o libalgorithm_a-ClusterProcess.o libalgorithm_a-ReadCluster.o libalgorithm_a-LRAlignment.o libalgorithm_a-StringThreader.o libalgorithm_a-ExtensionDP.o libalgorithm_a-HaplotypeBuilder.o libalgorithm_a-GapFillProcess.o libalgorithm_a-VariationBuilderCommon.o libalgorithm_a-KmerOverlaps.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libalgorithm.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Algorithm'
Making all in StringGraph
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/StringGraph'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGUtil.o `test -f 'SGUtil.cpp' || echo './'`SGUtil.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGAlgorithms.o `test -f 'SGAlgorithms.cpp' || echo './'`SGAlgorithms.cpp
In file included from ../Bigraph/GraphCommon.h:14,
                 from ../Bigraph/Bigraph.h:16,
                 from SGAlgorithms.h:13,
                 from SGAlgorithms.cpp:9:
SGAlgorithms.cpp: In function ‘Edge* SGAlgorithms::createEdgesFromOverlap(StringGraph*, const Overlap&, bool, size_t)’:
../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \
      |                                                     ^~
SGAlgorithms.cpp:60:9: note: in expansion of macro ‘WARN_ONCE’
   60 |         WARN_ONCE("Edge limit reached for vertex when loading graph");
      |         ^~~~~~~~~
../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   33 |                      printf("WARNING: [%s]\n", (x)); _warn_once = false;
      |                                                      ^~~~~~~~~~
SGAlgorithms.cpp:60:9: note: in expansion of macro ‘WARN_ONCE’
   60 |         WARN_ONCE("Edge limit reached for vertex when loading graph");
      |         ^~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGVisitors.o `test -f 'SGVisitors.cpp' || echo './'`SGVisitors.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-CompleteOverlapSet.o `test -f 'CompleteOverlapSet.cpp' || echo './'`CompleteOverlapSet.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-RemovalAlgorithm.o `test -f 'RemovalAlgorithm.cpp' || echo './'`RemovalAlgorithm.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGSearch.o `test -f 'SGSearch.cpp' || echo './'`SGSearch.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGWalk.o `test -f 'SGWalk.cpp' || echo './'`SGWalk.cpp
rm -f libstringgraph.a
ar cru libstringgraph.a libstringgraph_a-SGUtil.o libstringgraph_a-SGAlgorithms.o libstringgraph_a-SGVisitors.o libstringgraph_a-CompleteOverlapSet.o libstringgraph_a-RemovalAlgorithm.o libstringgraph_a-SGSearch.o libstringgraph_a-SGWalk.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libstringgraph.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/StringGraph'
Making all in Concurrency
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Concurrency'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../SuffixTools -I../Thirdparty -I../Algorithm -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libconcurrency_a-OverlapProcess.o `test -f 'OverlapProcess.cpp' || echo './'`OverlapProcess.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../SuffixTools -I../Thirdparty -I../Algorithm -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libconcurrency_a-RmdupProcess.o `test -f 'RmdupProcess.cpp' || echo './'`RmdupProcess.cpp
rm -f libconcurrency.a
ar cru libconcurrency.a libconcurrency_a-OverlapProcess.o libconcurrency_a-RmdupProcess.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libconcurrency.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Concurrency'
Making all in SuffixTools
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SuffixTools'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-STCommon.o `test -f 'STCommon.cpp' || echo './'`STCommon.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-Occurrence.o `test -f 'Occurrence.cpp' || echo './'`Occurrence.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SuffixArray.o `test -f 'SuffixArray.cpp' || echo './'`SuffixArray.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from STGlobals.h:13,
                 from STCommon.h:11,
                 from SuffixArray.h:11,
                 from SuffixArray.cpp:9:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SAElem&}; _Tp = SAElem; _Alloc = std::allocator<SAElem>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<SAElem>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SAElem; _Alloc = std::allocator<SAElem>]’,
    inlined from ‘void SuffixArray::removeReads(const NumericIDSet&)’ at SuffixArray.cpp:125:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SAElem*, std::vector<SAElem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SuffixCompare.o `test -f 'SuffixCompare.cpp' || echo './'`SuffixCompare.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-InverseSuffixArray.o `test -f 'InverseSuffixArray.cpp' || echo './'`InverseSuffixArray.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from STGlobals.h:14,
                 from STCommon.h:11,
                 from InverseSuffixArray.h:12,
                 from InverseSuffixArray.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from STGlobals.h:13:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void InverseSuffixArray::validate() const’ at InverseSuffixArray.cpp:57:31:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘void InverseSuffixArray::validate() const’ at InverseSuffixArray.cpp:61:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘void InverseSuffixArray::validate() const’ at InverseSuffixArray.cpp:61:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SACAInducedCopying.o `test -f 'SACAInducedCopying.cpp' || echo './'`SACAInducedCopying.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTAlgorithms.o `test -f 'BWTAlgorithms.cpp' || echo './'`BWTAlgorithms.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTDiskConstruction.o `test -f 'BWTDiskConstruction.cpp' || echo './'`BWTDiskConstruction.cpp
In file included from ../Util/EncodedString.h:22,
                 from Occurrence.h:13,
                 from RLBWT.h:13,
                 from BWT.h:18,
                 from BWTDiskConstruction.h:19,
                 from BWTDiskConstruction.cpp:12:
../Util/EncodedString.h: In instantiation of ‘void EncodedString<Codec>::_copy(const EncodedString<Codec>&) [with Codec = DNACodec]’:
../Util/EncodedString.h:43:18:   required from ‘EncodedString<Codec>::EncodedString(const EncodedString<Codec>&) [with Codec = DNACodec]’
/usr/arm-linux-gnueabi/include/c++/12/bits/new_allocator.h:175:4:   required from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = EncodedString<DNACodec>; _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>]’
/usr/arm-linux-gnueabi/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = EncodedString<DNACodec>; _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>; allocator_type = std::allocator<EncodedString<DNACodec> >]’
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:117:30:   required from ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>; _Alloc = std::allocator<EncodedString<DNACodec> >; reference = EncodedString<DNACodec>&]’
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21:   required from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = EncodedString<DNACodec>; _Alloc = std::allocator<EncodedString<DNACodec> >; value_type = EncodedString<DNACodec>]’
BWTDiskConstruction.cpp:252:36:   required from here
../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  236 |             assert(m_capacity = other.m_capacity);
      |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from STGlobals.h:13,
                 from STCommon.h:11,
                 from SuffixArray.h:11,
                 from BWTDiskConstruction.h:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MergeItem&}; _Tp = MergeItem; _Alloc = std::allocator<MergeItem>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<MergeItem>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MergeItem; _Alloc = std::allocator<MergeItem>]’,
    inlined from ‘MergeVector computeInitialSAIS(const BWTDiskParameters&)’ at BWTDiskConstruction.cpp:210:34:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MergeItem*, std::vector<MergeItem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MergeItem; _Alloc = std::allocator<MergeItem>]’,
    inlined from ‘MergeVector computeInitialBCR(const BWTDiskParameters&)’ at BWTDiskConstruction.cpp:267:34:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MergeItem*, std::vector<MergeItem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MergeItem; _Alloc = std::allocator<MergeItem>]’,
    inlined from ‘void buildBWTDisk(const BWTDiskParameters&)’ at BWTDiskConstruction.cpp:128:41:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MergeItem*, std::vector<MergeItem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MergeItem; _Alloc = std::allocator<MergeItem>]’,
    inlined from ‘void buildBWTDisk(const BWTDiskParameters&)’ at BWTDiskConstruction.cpp:141:41:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MergeItem*, std::vector<MergeItem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReader.o `test -f 'BWTReader.cpp' || echo './'`BWTReader.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriter.o `test -f 'BWTWriter.cpp' || echo './'`BWTWriter.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SAReader.o `test -f 'SAReader.cpp' || echo './'`SAReader.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from SAReader.h:12,
                 from SAReader.cpp:9:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SAElem&}; _Tp = SAElem; _Alloc = std::allocator<SAElem>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<SAElem>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SAElem; _Alloc = std::allocator<SAElem>]’,
    inlined from ‘void SAReader::readElems(SAElemVector&)’ at SAReader.cpp:65:29:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SAElem*, std::vector<SAElem> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SAWriter.o `test -f 'SAWriter.cpp' || echo './'`SAWriter.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-GapArray.o `test -f 'GapArray.cpp' || echo './'`GapArray.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-RankProcess.o `test -f 'RankProcess.cpp' || echo './'`RankProcess.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from RankProcess.h:13,
                 from RankProcess.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
    inlined from ‘RankResult RankProcess::process(const SequenceWorkItem&)’ at RankProcess.cpp:62:34:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
    inlined from ‘RankResult RankProcess::process(const SequenceWorkItem&)’ at RankProcess.cpp:78:34:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
    inlined from ‘RankResult RankProcess::process(const SequenceWorkItem&)’ at RankProcess.cpp:89:38:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SBWT.o `test -f 'SBWT.cpp' || echo './'`SBWT.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-RLBWT.o `test -f 'RLBWT.cpp' || echo './'`RLBWT.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriterBinary.o `test -f 'BWTWriterBinary.cpp' || echo './'`BWTWriterBinary.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReaderBinary.o `test -f 'BWTReaderBinary.cpp' || echo './'`BWTReaderBinary.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriterAscii.o `test -f 'BWTWriterAscii.cpp' || echo './'`BWTWriterAscii.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReaderAscii.o `test -f 'BWTReaderAscii.cpp' || echo './'`BWTReaderAscii.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTIntervalCache.o `test -f 'BWTIntervalCache.cpp' || echo './'`BWTIntervalCache.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-QuickBWT.o `test -f 'QuickBWT.cpp' || echo './'`QuickBWT.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SampledSuffixArray.o `test -f 'SampledSuffixArray.cpp' || echo './'`SampledSuffixArray.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTCABauerCoxRosone.o `test -f 'BWTCABauerCoxRosone.cpp' || echo './'`BWTCABauerCoxRosone.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from STGlobals.h:14,
                 from STCommon.h:11,
                 from SAWriter.h:13,
                 from BWTCABauerCoxRosone.h:12,
                 from BWTCABauerCoxRosone.cpp:9:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Distance = int; _Tp = BWTCA::BCRElem; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1844 |     __final_insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘void BWTCA::runBauerCoxRosone(const DNAEncodedStringVector*, const std::string&, const std::string&)’ at BWTCABauerCoxRosone.cpp:59:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<BWTCA::BCRElem*, vector<BWTCA::BCRElem> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘void BWTCA::runBauerCoxRosone(const DNAEncodedStringVector*, const std::string&, const std::string&)’ at BWTCABauerCoxRosone.cpp:79:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTCA::BCRElem*, std::vector<BWTCA::BCRElem> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTCARopebwt.o `test -f 'BWTCARopebwt.cpp' || echo './'`BWTCARopebwt.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-PopulationIndex.o `test -f 'PopulationIndex.cpp' || echo './'`PopulationIndex.cpp
rm -f libsuffixtools.a
ar cru libsuffixtools.a libsuffixtools_a-STCommon.o libsuffixtools_a-Occurrence.o libsuffixtools_a-SuffixArray.o libsuffixtools_a-SuffixCompare.o libsuffixtools_a-InverseSuffixArray.o libsuffixtools_a-SACAInducedCopying.o libsuffixtools_a-BWTAlgorithms.o libsuffixtools_a-BWTDiskConstruction.o libsuffixtools_a-BWTReader.o libsuffixtools_a-BWTWriter.o libsuffixtools_a-SAReader.o libsuffixtools_a-SAWriter.o libsuffixtools_a-GapArray.o libsuffixtools_a-RankProcess.o libsuffixtools_a-SBWT.o libsuffixtools_a-RLBWT.o libsuffixtools_a-BWTReader.o libsuffixtools_a-BWTWriter.o libsuffixtools_a-BWTWriterBinary.o libsuffixtools_a-BWTReaderBinary.o libsuffixtools_a-BWTWriterAscii.o libsuffixtools_a-BWTReaderAscii.o libsuffixtools_a-BWTIntervalCache.o libsuffixtools_a-QuickBWT.o libsuffixtools_a-SampledSuffixArray.o libsuffixtools_a-BWTCABauerCoxRosone.o libsuffixtools_a-BWTCARopebwt.o libsuffixtools_a-PopulationIndex.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libsuffixtools.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SuffixTools'
Making all in Scaffold
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Scaffold'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldVertex.o `test -f 'ScaffoldVertex.cpp' || echo './'`ScaffoldVertex.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldEdge.o `test -f 'ScaffoldEdge.cpp' || echo './'`ScaffoldEdge.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldGraph.o `test -f 'ScaffoldGraph.cpp' || echo './'`ScaffoldGraph.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldVisitors.o `test -f 'ScaffoldVisitors.cpp' || echo './'`ScaffoldVisitors.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldLink.o `test -f 'ScaffoldLink.cpp' || echo './'`ScaffoldLink.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldRecord.o `test -f 'ScaffoldRecord.cpp' || echo './'`ScaffoldRecord.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Bigraph/GraphCommon.h:13,
                 from ScaffoldLink.h:14,
                 from ScaffoldRecord.h:14,
                 from ScaffoldRecord.cpp:11:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ScaffoldLink&}; _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ScaffoldLink>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’,
    inlined from ‘void ScaffoldRecord::addLink(const ScaffoldLink&)’ at ScaffoldRecord.cpp:32:22:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ScaffoldLink*, std::vector<ScaffoldLink> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’,
    inlined from ‘void ScaffoldRecord::parse(const std::string&)’ at ScaffoldRecord.cpp:340:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ScaffoldLink*, std::vector<ScaffoldLink> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldGroup.o `test -f 'ScaffoldGroup.cpp' || echo './'`ScaffoldGroup.cpp
In file included from ../Bigraph/GraphCommon.h:14,
                 from ../Bigraph/Bigraph.h:16,
                 from ScaffoldVertex.h:12,
                 from ScaffoldGroup.h:13,
                 from ScaffoldGroup.cpp:10:
ScaffoldGroup.cpp: In member function ‘void ScaffoldGroup::getSecondaryLinks()’:
../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \
      |                                                     ^~
ScaffoldGroup.cpp:279:13: note: in expansion of macro ‘WARN_ONCE’
  279 |             WARN_ONCE("Recalculate xzDir");
      |             ^~~~~~~~~
../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   33 |                      printf("WARNING: [%s]\n", (x)); _warn_once = false;
      |                                                      ^~~~~~~~~~
ScaffoldGroup.cpp:279:13: note: in expansion of macro ‘WARN_ONCE’
  279 |             WARN_ONCE("Recalculate xzDir");
      |             ^~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Bigraph/Bigraph.h:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const LinkVertexPair&}; _Tp = LinkVertexPair; _Alloc = std::allocator<LinkVertexPair>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<LinkVertexPair>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LinkVertexPair; _Alloc = std::allocator<LinkVertexPair>]’,
    inlined from ‘void ScaffoldGroup::addLink(const ScaffoldLink&, ScaffoldVertex*)’ at ScaffoldGroup.cpp:26:22:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LinkVertexPair*, std::vector<LinkVertexPair> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LinkVertexPair; _Alloc = std::allocator<LinkVertexPair>]’,
    inlined from ‘void ScaffoldGroup::computeBestOrdering()’ at ScaffoldGroup.cpp:171:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LinkVertexPair*, std::vector<LinkVertexPair> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ScaffoldLink&}; _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ScaffoldLink>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’,
    inlined from ‘void ScaffoldGroup::getLinearLinks(LinkVector&)’ at ScaffoldGroup.cpp:205:23:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ScaffoldLink*, std::vector<ScaffoldLink> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ScaffoldLink; _Alloc = std::allocator<ScaffoldLink>]’,
    inlined from ‘void ScaffoldGroup::getLinearLinks(LinkVector&)’ at ScaffoldGroup.cpp:223:27:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ScaffoldLink*, std::vector<ScaffoldLink> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldSearch.o `test -f 'ScaffoldSearch.cpp' || echo './'`ScaffoldSearch.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldWalk.o `test -f 'ScaffoldWalk.cpp' || echo './'`ScaffoldWalk.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldAlgorithms.o `test -f 'ScaffoldAlgorithms.cpp' || echo './'`ScaffoldAlgorithms.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldSequenceCollection.o `test -f 'ScaffoldSequenceCollection.cpp' || echo './'`ScaffoldSequenceCollection.cpp
rm -f libscaffold.a
ar cru libscaffold.a libscaffold_a-ScaffoldVertex.o libscaffold_a-ScaffoldEdge.o libscaffold_a-ScaffoldGraph.o libscaffold_a-ScaffoldVisitors.o libscaffold_a-ScaffoldLink.o libscaffold_a-ScaffoldRecord.o libscaffold_a-ScaffoldGroup.o libscaffold_a-ScaffoldSearch.o libscaffold_a-ScaffoldWalk.o libscaffold_a-ScaffoldAlgorithms.o libscaffold_a-ScaffoldSequenceCollection.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libscaffold.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Scaffold'
Making all in GraphDiff
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/GraphDiff'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelUtil.o `test -f 'DindelUtil.cpp' || echo './'`DindelUtil.cpp
DindelUtil.cpp: In function ‘DindelReturnCode DindelUtil::runDindelPairMatePair(const std::string&, const StringVector&, const StringVector&, const GraphCompareParameters&, std::ostream&, std::ostream&, std::ostream&, DindelReadReferenceAlignmentVector*)’:
DindelUtil.cpp:65:10: warning: variable ‘has_complex_variant’ set but not used [-Wunused-but-set-variable]
   65 |     bool has_complex_variant = false;
      |          ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64,
                 from /usr/arm-linux-gnueabi/include/c++/12/queue:61,
                 from GraphCompare.h:19,
                 from DindelUtil.h:14,
                 from DindelUtil.cpp:11:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = std::_Rb_tree_const_iterator<DindelReferenceMapping>; <template-parameter-2-2> = void; _Tp = DindelReferenceMapping; _Alloc = std::allocator<DindelReferenceMapping>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:702:9: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<DindelReferenceMapping>’ changed in GCC 7.1
  702 |         vector(_InputIterator __first, _InputIterator __last,
      |         ^~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:702:9: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<DindelReferenceMapping>’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {DindelRead}; _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DindelRead>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {DindelRead}; _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelRead*, std::vector<DindelRead> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DindelUtil.cpp: In function ‘DindelReturnCode DindelUtil::runDindelPairMatePair(const std::string&, const StringVector&, const StringVector&, const GraphCompareParameters&, std::ostream&, std::ostream&, std::ostream&, DindelReadReferenceAlignmentVector*)’:
DindelUtil.cpp:247:91: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator<DindelReferenceMapping>’ changed in GCC 7.1
  247 |     std::vector<DindelReferenceMapping> dRefMappings(refMappings.begin(),refMappings.end());
      |                                                                                           ^
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelRealignWindow.o `test -f 'DindelRealignWindow.cpp' || echo './'`DindelRealignWindow.cpp
DindelRealignWindow.cpp: In member function ‘void DindelHaplotype::write(std::ostream&) const’:
DindelRealignWindow.cpp:762:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  762 |     for (size_t x=0; x<m_seq.size(); x++)
      |     ^~~
DindelRealignWindow.cpp:763:26: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  763 |         out << m_seq[x]; out << std::endl;
      |                          ^~~
DindelRealignWindow.cpp:764:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  764 |     for (size_t x=0; x<m_refPos.size(); x++)
      |     ^~~
DindelRealignWindow.cpp:765:48: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  765 |         out << " " << m_refPos[x]-m_refPos[0]; out << std::endl;
      |                                                ^~~
DindelRealignWindow.cpp: In member function ‘void DindelSequenceHash::print() const’:
DindelRealignWindow.cpp:1037:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1037 |         for (std::list<int>::const_iterator i=it->second.begin();i!=it->second.end();i++) std::cout << " " << *i; std::cout << std::endl;
      |         ^~~
DindelRealignWindow.cpp:1037:115: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1037 |         for (std::list<int>::const_iterator i=it->second.begin();i!=it->second.end();i++) std::cout << " " << *i; std::cout << std::endl;
      |                                                                                                                   ^~~
DindelRealignWindow.cpp: In member function ‘void DindelRealignWindow::computeHaplotypePairLikelihoods(std::vector<double>&, std::unordered_map<std::__cxx11::basic_string<char>, std::__cxx11::list<int> >&, const std::vector<std::vector<double> >&)’:
DindelRealignWindow.cpp:2589:12: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2589 |            for (int h1=0;h1<numAH;h1++)
      |            ^~~
DindelRealignWindow.cpp:2600:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2600 |                if (DEBUG_CALLINDEL) {
      |                ^~
DindelRealignWindow.cpp: In member function ‘void DindelRealignWindow::addCalledHaplotypeMatePairs(int, DindelRealignWindowResult&, const std::vector<DindelMultiHaplotype>&, const std::vector<std::unordered_map<int, double> >&, double, int)’:
DindelRealignWindow.cpp:2743:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2743 |                 for (size_t x=0;x<vars.size();x++) std::cout << " " << vars[x].getID(); std::cout << std::endl;
      |                 ^~~
DindelRealignWindow.cpp:2743:89: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2743 |                 for (size_t x=0;x<vars.size();x++) std::cout << " " << vars[x].getID(); std::cout << std::endl;
      |                                                                                         ^~~
DindelRealignWindow.cpp: In member function ‘void DindelRealignWindow::addCalledHaplotypeSingleRead(int, DindelRealignWindowResult&, const std::vector<DindelMultiHaplotype>&, const std::vector<std::unordered_map<int, double> >&, double, int)’:
DindelRealignWindow.cpp:2906:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2906 |             for (size_t x=0;x<vars.size();x++) std::cout << " " << vars[x].getID(); std::cout << std::endl;
      |             ^~~
DindelRealignWindow.cpp:2906:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2906 |             for (size_t x=0;x<vars.size();x++) std::cout << " " << vars[x].getID(); std::cout << std::endl;
      |                                                                                     ^~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/StdAlnTools.h:13,
                 from DindelRealignWindow.cpp:28:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const DindelVariant&}; _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DindelVariant>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {DindelRealignWindowResult::HaplotypeProperties}; _Tp = DindelRealignWindowResult::HaplotypeProperties; _Alloc = std::allocator<DindelRealignWindowResult::HaplotypeProperties>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DindelRealignWindowResult::HaplotypeProperties>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {DindelRealignWindowResult::HaplotypeProperties}; _Tp = DindelRealignWindowResult::HaplotypeProperties; _Alloc = std::allocator<DindelRealignWindowResult::HaplotypeProperties>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelRealignWindowResult::HaplotypeProperties*, std::vector<DindelRealignWindowResult::HaplotypeProperties> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60,
                 from DindelRealignWindow.cpp:24:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const DindelVariant&>, std::tuple<>}; _Key = DindelVariant; _Val = std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>; _KeyOfValue = std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = DindelVariant; _Tp = DindelRealignWindowResult::GenotypeCall; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’,
    inlined from ‘void DindelRealignWindow::addDiploidGenotypes(DindelRealignWindowResult&, const std::vector<int>&, const std::vector<std::vector<double> >&)’ at DindelRealignWindow.cpp:2462:24:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = DindelVariant; _Tp = DindelRealignWindowResult::GenotypeCall; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’,
    inlined from ‘void DindelRealignWindow::addDiploidGenotypes(DindelRealignWindowResult&, const std::vector<int>&, const std::vector<std::vector<double> >&)’ at DindelRealignWindow.cpp:2485:53:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = DindelVariant; _Tp = DindelRealignWindowResult::GenotypeCall; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’,
    inlined from ‘void DindelRealignWindow::addDiploidGenotypes(DindelRealignWindowResult&, const std::vector<int>&, const std::vector<std::vector<double> >&)’ at DindelRealignWindow.cpp:2486:53:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = DindelVariant; _Tp = DindelRealignWindowResult::GenotypeCall; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’,
    inlined from ‘void DindelRealignWindow::addDiploidGenotypes(DindelRealignWindowResult&, const std::vector<int>&, const std::vector<std::vector<double> >&)’ at DindelRealignWindow.cpp:2504:69:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = DindelVariant; _Tp = DindelRealignWindowResult::GenotypeCall; _Compare = std::less<DindelVariant>; _Alloc = std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >]’,
    inlined from ‘void DindelRealignWindow::addDiploidGenotypes(DindelRealignWindowResult&, const std::vector<int>&, const std::vector<std::vector<double> >&)’ at DindelRealignWindow.cpp:2505:69:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<DindelVariant, std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall>, std::_Select1st<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> >, std::less<DindelVariant>, std::allocator<std::pair<const DindelVariant, DindelRealignWindowResult::GenotypeCall> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘void DindelRealignWindow::setAddReadsSingleReadMultiSample(int, int, const std::vector<std::vector<double> >&, std::vector<std::unordered_map<int, double> >&, std::vector<double>&, int, int, std::vector<double>&, std::vector<double>&, const std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::unordered_map<std::__cxx11::basic_string<char>, std::__cxx11::list<int> >&)’ at DindelRealignWindow.cpp:3236:39:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’,
    inlined from ‘void DindelHaplotype::extractVariants()’ at DindelRealignWindow.cpp:648:41:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:63:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, vector<DindelVariant> >; _ForwardIterator = DindelVariant*]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >; _ForwardIterator = DindelVariant*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, vector<DindelVariant> >; _ForwardIterator = DindelVariant*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, vector<DindelVariant> >; _ForwardIterator = DindelVariant*; _Tp = DindelVariant]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >; _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1617:35,
    inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:232:44:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >; _ForwardIterator = DindelVariant*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, vector<DindelVariant> >; _ForwardIterator = DindelVariant*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelVariant*, vector<DindelVariant> >; _ForwardIterator = DindelVariant*; _Tp = DindelVariant]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:601:31,
    inlined from ‘std::vector<DindelVariant> WindowFile::getNextWindow()’ at DindelRealignWindow.cpp:4633:30:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DindelVariant; _Alloc = std::allocator<DindelVariant>]’,
    inlined from ‘std::vector<DindelVariant> WindowFile::getNextWindow()’ at DindelRealignWindow.cpp:4654:31:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelVariant*, std::vector<DindelVariant> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >’ changed in GCC 7.1
  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*; _Tp = DindelReferenceMapping]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >; _Tp = DindelReferenceMapping; _Alloc = std::allocator<DindelReferenceMapping>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1617:35,
    inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelReferenceMapping; _Alloc = std::allocator<DindelReferenceMapping>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:232:44:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void DindelRealignWindow::computeProjectedMappingQuality()’ at DindelRealignWindow.cpp:1841:37:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void DindelRealignWindow::computeProjectedMappingQuality()’ at DindelRealignWindow.cpp:1852:44:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const VCFRecord&}; _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<VCFRecord>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void DindelRealignWindowResult::Inference::outputAsVCF(const DindelVariant&, const DindelRealignWindowResult&, VCFCollection&, const ReadTable*) const’ at DindelRealignWindow.cpp:1203:41:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void DindelRealignWindowResult::Inference::outputAsVCF(const DindelVariant&, const DindelRealignWindowResult&, VCFCollection&, const ReadTable*) const’ at DindelRealignWindow.cpp:1208:31:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = VCFRecord; _Alloc = std::allocator<VCFRecord>]’,
    inlined from ‘void DindelRealignWindowResult::Inference::outputAsVCF(const DindelVariant&, const DindelRealignWindowResult&, VCFCollection&, const ReadTable*) const’ at DindelRealignWindow.cpp:1409:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<VCFRecord*, std::vector<VCFRecord> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const DindelRead&}; _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DindelRead>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’,
    inlined from ‘void DindelRealignWindow::showHaplotypeOnlyReadsSingleRead(int, const std::vector<std::vector<double> >&, int, int)’ at DindelRealignWindow.cpp:3513:28:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelRead*, std::vector<DindelRead> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’,
    inlined from ‘void DindelRealignWindow::showHaplotypeOnlyReadsMatePairs(int, const std::vector<std::vector<double> >&, int, int)’ at DindelRealignWindow.cpp:3468:28:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelRead*, std::vector<DindelRead> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = DindelRead; _Alloc = std::allocator<DindelRead>]’,
    inlined from ‘void DindelRealignWindow::showHaplotypeOnlyReadsMatePairs(int, const std::vector<std::vector<double> >&, int, int)’ at DindelRealignWindow.cpp:3469:28:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelRead*, std::vector<DindelRead> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {DindelHaplotype}; _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<DindelHaplotype>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {DindelHaplotype}; _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘DindelMultiHaplotype::DindelMultiHaplotype(const std::vector<DindelReferenceMapping>&, const std::string&, size_t)’ at DindelRealignWindow.cpp:937:31:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DindelHaplotype*, std::vector<DindelHaplotype> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >’ changed in GCC 7.1
  113 |     __do_uninit_copy(_InputIterator __first, _InputIterator __last,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*; _Tp = DindelHaplotype]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >; _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1617:35,
    inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:232:44,
    inlined from ‘DindelMultiHaplotype& DindelMultiHaplotype::operator=(const DindelMultiHaplotype&)’ at DindelRealignWindow.h:476:7:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelHaplotype*, vector<DindelHaplotype> >; _ForwardIterator = DindelHaplotype*; _Tp = DindelHaplotype]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelHaplotype; _Alloc = std::allocator<DindelHaplotype>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:601:31,
    inlined from ‘DindelMultiHaplotype::DindelMultiHaplotype(const DindelMultiHaplotype&)’ at DindelRealignWindow.h:476:7:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelHaplotype*, std::vector<DindelHaplotype> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*; bool _TrivialValueTypes = false]’,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const DindelReferenceMapping*, vector<DindelReferenceMapping> >; _ForwardIterator = DindelReferenceMapping*; _Tp = DindelReferenceMapping]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:372:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = DindelReferenceMapping; _Alloc = std::allocator<DindelReferenceMapping>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:601:31,
    inlined from ‘DindelMultiHaplotype::DindelMultiHaplotype(const DindelMultiHaplotype&)’ at DindelRealignWindow.h:476:7:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const DindelReferenceMapping*, std::vector<DindelReferenceMapping> >’ changed in GCC 7.1
  137 |         { return std::__do_uninit_copy(__first, __last, __result); }
      |                  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelHMM.o `test -f 'DindelHMM.cpp' || echo './'`DindelHMM.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-OverlapHaplotypeBuilder.o `test -f 'OverlapHaplotypeBuilder.cpp' || echo './'`OverlapHaplotypeBuilder.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-StringHaplotypeBuilder.o `test -f 'StringHaplotypeBuilder.cpp' || echo './'`StringHaplotypeBuilder.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DeBruijnHaplotypeBuilder.o `test -f 'DeBruijnHaplotypeBuilder.cpp' || echo './'`DeBruijnHaplotypeBuilder.cpp
DeBruijnHaplotypeBuilder.cpp: In member function ‘Vertex* DeBruijnHaplotypeBuilder::extendUnambiguously(Vertex*, StringGraph*, EdgeDir, size_t, size_t)’:
DeBruijnHaplotypeBuilder.cpp:227:16: warning: variable ‘ext_count’ set but not used [-Wunused-but-set-variable]
  227 |         size_t ext_count = 0;
      |                ^~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-PairedDeBruijnHaplotypeBuilder.o `test -f 'PairedDeBruijnHaplotypeBuilder.cpp' || echo './'`PairedDeBruijnHaplotypeBuilder.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-HapgenUtil.o `test -f 'HapgenUtil.cpp' || echo './'`HapgenUtil.cpp
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../SuffixTools/STGlobals.h:13,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from ../SuffixTools/BWTIndexSet.h:14,
                 from HapgenUtil.h:14,
                 from HapgenUtil.cpp:12:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BWTInterval&}; _Tp = BWTInterval; _Alloc = std::allocator<BWTInterval>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<BWTInterval>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const LocalAlignmentResult&}; _Tp = LocalAlignmentResult; _Alloc = std::allocator<LocalAlignmentResult>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<LocalAlignmentResult>::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LocalAlignmentResult; _Alloc = std::allocator<LocalAlignmentResult>]’,
    inlined from ‘LocalAlignmentResultVector HapgenUtil::alignReadsLocally(const std::string&, const SeqItemVector&)’ at HapgenUtil.cpp:603:26:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LocalAlignmentResult*, std::vector<LocalAlignmentResult> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {LocalAlignmentResult}; _Tp = LocalAlignmentResult; _Alloc = std::allocator<LocalAlignmentResult>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<LocalAlignmentResult>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {LocalAlignmentResult}; _Tp = LocalAlignmentResult; _Alloc = std::allocator<LocalAlignmentResult>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = LocalAlignmentResult; _Alloc = std::allocator<LocalAlignmentResult>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘bool HapgenUtil::checkAlignmentsAreConsistent(const std::string&, const StringVector&)’ at HapgenUtil.cpp:437:29:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<LocalAlignmentResult*, std::vector<LocalAlignmentResult> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BWTInterval; _Alloc = std::allocator<BWTInterval>]’,
    inlined from ‘bool HapgenUtil::extractHaplotypeReads(const StringVector&, const BWTIndexSet&, int, bool, size_t, int64_t, SeqRecordVector*, SeqRecordVector*)’ at HapgenUtil.cpp:497:32:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<BWTInterval*, std::vector<BWTInterval> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-VCFTester.o `test -f 'VCFTester.cpp' || echo './'`VCFTester.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-GraphCompare.o `test -f 'GraphCompare.cpp' || echo './'`GraphCompare.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-OverlapExtractorWithCorrection.o `test -f 'OverlapExtractorWithCorrection.cpp' || echo './'`OverlapExtractorWithCorrection.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DBGPathGuide.o `test -f 'DBGPathGuide.cpp' || echo './'`DBGPathGuide.cpp
rm -f libgraphdiff.a
ar cru libgraphdiff.a libgraphdiff_a-DindelUtil.o libgraphdiff_a-DindelRealignWindow.o libgraphdiff_a-DindelHMM.o libgraphdiff_a-OverlapHaplotypeBuilder.o libgraphdiff_a-StringHaplotypeBuilder.o libgraphdiff_a-DeBruijnHaplotypeBuilder.o libgraphdiff_a-PairedDeBruijnHaplotypeBuilder.o libgraphdiff_a-HapgenUtil.o libgraphdiff_a-VCFTester.o libgraphdiff_a-GraphCompare.o libgraphdiff_a-OverlapExtractorWithCorrection.o libgraphdiff_a-DBGPathGuide.o 
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libgraphdiff.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/GraphDiff'
Making all in SGA
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SGA'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-sga.o `test -f 'sga.cpp' || echo './'`sga.cpp
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-index.o `test -f 'index.cpp' || echo './'`index.cpp
index.cpp: In function ‘void parseIndexOptions(int, char**)’:
index.cpp:276:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  276 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from ../Util/EncodedString.h:22,
                 from ../SuffixTools/Occurrence.h:13,
                 from ../SuffixTools/RLBWT.h:13,
                 from ../SuffixTools/BWT.h:18,
                 from ../SuffixTools/BWTDiskConstruction.h:19,
                 from index.cpp:18:
../Util/EncodedString.h: In instantiation of ‘void EncodedString<Codec>::_copy(const EncodedString<Codec>&) [with Codec = DNACodec]’:
../Util/EncodedString.h:43:18:   required from ‘EncodedString<Codec>::EncodedString(const EncodedString<Codec>&) [with Codec = DNACodec]’
/usr/arm-linux-gnueabi/include/c++/12/bits/new_allocator.h:175:4:   required from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = EncodedString<DNACodec>; _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>]’
/usr/arm-linux-gnueabi/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = EncodedString<DNACodec>; _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>; allocator_type = std::allocator<EncodedString<DNACodec> >]’
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:117:30:   required from ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {EncodedString<DNACodec>}; _Tp = EncodedString<DNACodec>; _Alloc = std::allocator<EncodedString<DNACodec> >; reference = EncodedString<DNACodec>&]’
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21:   required from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = EncodedString<DNACodec>; _Alloc = std::allocator<EncodedString<DNACodec> >; value_type = EncodedString<DNACodec>]’
index.cpp:130:27:   required from here
../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  236 |             assert(m_capacity = other.m_capacity);
      |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-overlap.o `test -f 'overlap.cpp' || echo './'`overlap.cpp
overlap.cpp: In function ‘void parseOverlapOptions(int, char**)’:
overlap.cpp:327:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  327 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-assemble.o `test -f 'assemble.cpp' || echo './'`assemble.cpp
assemble.cpp: In function ‘void parseAssembleOptions(int, char**)’:
assemble.cpp:234:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  234 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-correct.o `test -f 'correct.cpp' || echo './'`correct.cpp
correct.cpp: In function ‘void parseCorrectOptions(int, char**)’:
correct.cpp:330:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  330 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-oview.o `test -f 'oview.cpp' || echo './'`oview.cpp
oview.cpp: In function ‘void parseOviewOptions(int, char**)’:
oview.cpp:202:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  202 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-preprocess.o `test -f 'preprocess.cpp' || echo './'`preprocess.cpp
preprocess.cpp: In function ‘void parsePreprocessOptions(int, char**)’:
preprocess.cpp:616:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  616 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-rmdup.o `test -f 'rmdup.cpp' || echo './'`rmdup.cpp
rmdup.cpp: In function ‘void parseRmdupOptions(int, char**)’:
rmdup.cpp:348:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  348 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-merge.o `test -f 'merge.cpp' || echo './'`merge.cpp
merge.cpp: In function ‘void parseMergeOptions(int, char**)’:
merge.cpp:173:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  173 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-subgraph.o `test -f 'subgraph.cpp' || echo './'`subgraph.cpp
subgraph.cpp: In function ‘void parseSubgraphOptions(int, char**)’:
subgraph.cpp:169:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  169 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-scaffold.o `test -f 'scaffold.cpp' || echo './'`scaffold.cpp
scaffold.cpp: In function ‘void parseScaffoldOptions(int, char**)’:
scaffold.cpp:189:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  189 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-scaffold2fasta.o `test -f 'scaffold2fasta.cpp' || echo './'`scaffold2fasta.cpp
scaffold2fasta.cpp: In function ‘void parseScaffold2fastaOptions(int, char**)’:
scaffold2fasta.cpp:196:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  196 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-connect.o `test -f 'connect.cpp' || echo './'`connect.cpp
In file included from connect.cpp:15:
connect.cpp: In function ‘int connectMain(int, char**)’:
../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \
      |                                                     ^~
connect.cpp:297:17: note: in expansion of macro ‘WARN_ONCE’
  297 |                 WARN_ONCE("check orientation of result");
      |                 ^~~~~~~~~
../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   33 |                      printf("WARNING: [%s]\n", (x)); _warn_once = false;
      |                                                      ^~~~~~~~~~
connect.cpp:297:17: note: in expansion of macro ‘WARN_ONCE’
  297 |                 WARN_ONCE("check orientation of result");
      |                 ^~~~~~~~~
connect.cpp: In function ‘void parseConnectOptions(int, char**)’:
connect.cpp:465:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  465 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-walk.o `test -f 'walk.cpp' || echo './'`walk.cpp
walk.cpp: In function ‘void parseWalkOptions(int, char**)’:
walk.cpp:323:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  323 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-filter.o `test -f 'filter.cpp' || echo './'`filter.cpp
filter.cpp: In function ‘void parseFilterOptions(int, char**)’:
filter.cpp:217:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  217 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-kmer-count.o `test -f 'kmer-count.cpp' || echo './'`kmer-count.cpp
kmer-count.cpp: In function ‘void parseKmerCountOptions(int, char**)’:
kmer-count.cpp:63:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
   63 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-stats.o `test -f 'stats.cpp' || echo './'`stats.cpp
stats.cpp: In function ‘void parseStatsOptions(int, char**)’:
stats.cpp:171:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  171 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-fm-merge.o `test -f 'fm-merge.cpp' || echo './'`fm-merge.cpp
fm-merge.cpp: In function ‘void parseFMMergeOptions(int, char**)’:
fm-merge.cpp:164:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  164 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gmap.o `test -f 'gmap.cpp' || echo './'`gmap.cpp
gmap.cpp: In function ‘void parseGmapOptions(int, char**)’:
gmap.cpp:303:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  303 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-filterBAM.o `test -f 'filterBAM.cpp' || echo './'`filterBAM.cpp
filterBAM.cpp: In function ‘void parseFilterBAMOptions(int, char**)’:
filterBAM.cpp:438:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  438 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-cluster.o `test -f 'cluster.cpp' || echo './'`cluster.cpp
cluster.cpp: In function ‘void parseClusterOptions(int, char**)’:
cluster.cpp:292:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  292 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gen-ssa.o `test -f 'gen-ssa.cpp' || echo './'`gen-ssa.cpp
gen-ssa.cpp: In function ‘void parseGenSSAOptions(int, char**)’:
gen-ssa.cpp:108:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  108 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-bwt2fa.o `test -f 'bwt2fa.cpp' || echo './'`bwt2fa.cpp
bwt2fa.cpp: In function ‘void parseBWT2FAOptions(int, char**)’:
bwt2fa.cpp:96:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
   96 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-graph-diff.o `test -f 'graph-diff.cpp' || echo './'`graph-diff.cpp
graph-diff.cpp: In function ‘void parseGraphDiffOptions(int, char**)’:
graph-diff.cpp:493:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  493 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-graph-concordance.o `test -f 'graph-concordance.cpp' || echo './'`graph-concordance.cpp
graph-concordance.cpp: In function ‘std::string reconstructHaplotype(const VCFRecord&, VariantRecordVector, const ReadTable&, const BWTIndexSet&, size_t)’:
graph-concordance.cpp:214:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
  214 |     if(end > chr.seq.length())
      |        ~~~~^~~~~~~~~~~~~~~~~~
graph-concordance.cpp: In function ‘void parseGraphConcordanceOptions(int, char**)’:
graph-concordance.cpp:437:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  437 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gapfill.o `test -f 'gapfill.cpp' || echo './'`gapfill.cpp
gapfill.cpp: In function ‘void parseGapFillOptions(int, char**)’:
gapfill.cpp:148:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  148 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-preqc.o `test -f 'preqc.cpp' || echo './'`preqc.cpp
In file included from ../Thirdparty/rapidjson/reader.h:7,
                 from ../Thirdparty/rapidjson/document.h:4,
                 from preqc.cpp:27:
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF8<CharType>::TakeBOM(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef170’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:170:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  170 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static rapidjson::UTF8<CharType>::Ch rapidjson::UTF8<CharType>::Take(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef183’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:183:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  183 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF8<CharType>::PutBOM(OutputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef189’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:189:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  189 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF8<CharType>::Put(OutputByteStream&, Ch)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef195’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:195:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  195 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16<CharType>::Encode(OutputStream&, unsigned int)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef219’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:219:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  219 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 2);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF16<CharType>::Decode(InputStream&, unsigned int*)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef234’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:234:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  234 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 2);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF16<CharType>::Validate(InputStream&, OutputStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef252’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:252:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  252 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 2);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef253’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:253:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  253 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 2);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16LE<CharType>::TakeBOM(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef271’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:271:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  271 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16LE<CharType>::Take(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef278’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:278:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  278 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16LE<CharType>::PutBOM(OutputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef286’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:286:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  286 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16LE<CharType>::Put(OutputByteStream&, CharType)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef292’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:292:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  292 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16BE<CharType>::TakeBOM(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef303’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:303:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  303 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16BE<CharType>::Take(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef310’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:310:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  310 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16BE<CharType>::PutBOM(OutputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef318’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:318:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  318 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16BE<CharType>::Put(OutputByteStream&, CharType)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef324’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:324:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  324 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32<CharType>::Encode(OutputStream&, unsigned int)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef348’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:348:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  348 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 4);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF32<CharType>::Decode(InputStream&, unsigned int*)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef355’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:355:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  355 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 4);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF32<CharType>::Validate(InputStream&, OutputStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef363’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:363:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  363 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 4);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32LE<CharType>::TakeBOM(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef375’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:375:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  375 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32LE<CharType>::Take(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef382’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:382:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  382 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32LE<CharType>::PutBOM(OutputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef392’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:392:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  392 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32LE<CharType>::Put(OutputByteStream&, CharType)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef398’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:398:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  398 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32BE<CharType>::TakeBOM(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef411’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:411:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  411 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32BE<CharType>::Take(InputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef418’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:418:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  418 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32BE<CharType>::PutBOM(OutputByteStream&)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef428’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:428:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  428 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32BE<CharType>::Put(OutputByteStream&, CharType)’:
../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef434’ locally defined but not used [-Wunused-local-typedefs]
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |                        ^~~~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’
  111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y
      |                                  ^
../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’
  109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y)
      |                              ^~~~~~~~~~~~~~~~~
../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’
  115 |         RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__)
      |         ^~~~~~~~~~~~~~
../Thirdparty/rapidjson/encodings.h:434:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’
  434 |                 RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
preqc.cpp: In function ‘void parsePreQCOptions(int, char**)’:
preqc.cpp:2090:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 2090 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/queue:62,
                 from preqc.cpp:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/RLBWT.h:12,
                 from ../SuffixTools/BWT.h:18,
                 from preqc.h:14,
                 from preqc.cpp:16:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from /usr/arm-linux-gnueabi/include/c++/12/queue:61:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void generate_gc_distribution(JSONWriter*, const BWTIndexSet&)’ at preqc.cpp:1108:28:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_Z25generate_duplication_ratePN9rapidjson12PrettyWriterINS_10FileStreamENS_4UTF8IcEES3_NS_19MemoryPoolAllocatorINS_12CrtAllocatorEEEEERK11BWTIndexSet._omp_fn.0’ at preqc.cpp:1230:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_Z25generate_duplication_ratePN9rapidjson12PrettyWriterINS_10FileStreamENS_4UTF8IcEES3_NS_19MemoryPoolAllocatorINS_12CrtAllocatorEEEEERK11BWTIndexSet._omp_fn.0’ at preqc.cpp:1230:18:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
    inlined from ‘_Z25generate_duplication_ratePN9rapidjson12PrettyWriterINS_10FileStreamENS_4UTF8IcEES3_NS_19MemoryPoolAllocatorINS_12CrtAllocatorEEEEERK11BWTIndexSet._omp_fn.0’ at preqc.cpp:1227:35:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
    inlined from ‘_Z25generate_duplication_ratePN9rapidjson12PrettyWriterINS_10FileStreamENS_4UTF8IcEES3_NS_19MemoryPoolAllocatorINS_12CrtAllocatorEEEEERK11BWTIndexSet._omp_fn.0’ at preqc.cpp:1217:35:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-overlap-long.o `test -f 'overlap-long.cpp' || echo './'`overlap-long.cpp
overlap-long.cpp: In function ‘void parseOverlapLongOptions(int, char**)’:
overlap-long.cpp:338:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  338 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-variant-detectability.o `test -f 'variant-detectability.cpp' || echo './'`variant-detectability.cpp
variant-detectability.cpp: In function ‘void parseVarDetectOptions(int, char**)’:
variant-detectability.cpp:205:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  205 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-rewrite-evidence-bam.o `test -f 'rewrite-evidence-bam.cpp' || echo './'`rewrite-evidence-bam.cpp
In file included from rewrite-evidence-bam.cpp:18:
/usr//include/bamtools/api/algorithms/Sort.h:64:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/string:48,
                 from /usr/arm-linux-gnueabi/include/c++/12/bits/locale_classes.h:40,
                 from /usr/arm-linux-gnueabi/include/c++/12/bits/ios_base.h:41,
                 from /usr/arm-linux-gnueabi/include/c++/12/ios:42,
                 from /usr/arm-linux-gnueabi/include/c++/12/ostream:38,
                 from /usr/arm-linux-gnueabi/include/c++/12/iostream:39,
                 from rewrite-evidence-bam.cpp:10:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
rewrite-evidence-bam.cpp: In function ‘void parseRewriteEvidenceBAMOptions(int, char**)’:
rewrite-evidence-bam.cpp:158:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  158 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-somatic-variant-filters.o `test -f 'somatic-variant-filters.cpp' || echo './'`somatic-variant-filters.cpp
somatic-variant-filters.cpp: In function ‘void parseSomaticVariantFiltersOptions(int, char**)’:
somatic-variant-filters.cpp:794:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  794 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabi/include/c++/12/algorithm:61,
                 from ../SuffixTools/STGlobals.h:14,
                 from ../SuffixTools/STCommon.h:11,
                 from ../SuffixTools/BWTAlgorithms.h:12,
                 from somatic-variant-filters.cpp:16:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘double median(std::vector<T>) [with T = double]’ at somatic-variant-filters.cpp:131:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘double median(std::vector<T>) [with T = double]’ at somatic-variant-filters.cpp:131:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from somatic-variant-filters.cpp:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘CoverageStats getVariantCoverage(BamTools::BamReader*, const VCFRecord&, const ReadTable*)’ at somatic-variant-filters.cpp:290:34:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-haplotype-filter.o `test -f 'haplotype-filter.cpp' || echo './'`haplotype-filter.cpp
haplotype-filter.cpp: In function ‘void parseHaplotypeFilterOptions(int, char**)’:
haplotype-filter.cpp:1066:75: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 1066 |     for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70,
                 from ../Util/Util.h:12,
                 from haplotype-filter.cpp:14:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<double> loadSampleDepthsFromFile(std::string)’ at haplotype-filter.cpp:973:25:
/usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I..  -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp  -I/usr//include -I/usr//include/bamtools -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-OverlapCommon.o `test -f 'OverlapCommon.cpp' || echo './'`OverlapCommon.cpp
arm-linux-gnueabi-g++ -Wall -Wextra  -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp  -L/usr//lib -L/usr//lib/bamtools -Wl,-z,relro -Wl,-z,now -o sga sga-sga.o sga-index.o sga-overlap.o sga-assemble.o sga-correct.o sga-oview.o sga-preprocess.o sga-rmdup.o sga-merge.o sga-subgraph.o sga-scaffold.o sga-scaffold2fasta.o sga-connect.o sga-walk.o sga-filter.o sga-kmer-count.o sga-stats.o sga-fm-merge.o sga-gmap.o sga-filterBAM.o sga-cluster.o sga-gen-ssa.o sga-bwt2fa.o sga-graph-diff.o sga-graph-concordance.o sga-gapfill.o sga-preqc.o sga-overlap-long.o sga-variant-detectability.o sga-rewrite-evidence-bam.o sga-somatic-variant-filters.o sga-haplotype-filter.o sga-OverlapCommon.o ../Scaffold/libscaffold.a ../GraphDiff/libgraphdiff.a ../StringGraph/libstringgraph.a ../Concurrency/libconcurrency.a ../Algorithm/libalgorithm.a ../SuffixTools/libsuffixtools.a ../Bigraph/libbigraph.a ../Util/libutil.a ../SQG/libsqg.a ../Thirdparty/libthirdparty.a -lz  -lbamtools
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SGA'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--sourcedirectory=src
   dh_prep -a -O--sourcedirectory=src
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
	cd src && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/sga AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
Making install in bin
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/bin'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/bin'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/sga/usr/bin'
 /usr/bin/install -c sga-bam2de sga-mergeDriver '/<<PKGBUILDDIR>>/debian/sga/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/bin'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/bin'
Making install in Thirdparty
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Thirdparty'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Thirdparty'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Thirdparty'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Thirdparty'
Making install in Util
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
Making install in SQG
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SQG'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/SQG'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/SQG'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SQG'
Making install in Bigraph
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Bigraph'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Bigraph'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Bigraph'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Bigraph'
Making install in Algorithm
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Algorithm'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Algorithm'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Algorithm'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Algorithm'
Making install in StringGraph
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/StringGraph'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/StringGraph'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/StringGraph'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/StringGraph'
Making install in Concurrency
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Concurrency'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Concurrency'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Concurrency'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Concurrency'
Making install in SuffixTools
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SuffixTools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/SuffixTools'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/SuffixTools'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SuffixTools'
Making install in Scaffold
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Scaffold'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/Scaffold'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/Scaffold'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Scaffold'
Making install in GraphDiff
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/GraphDiff'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/GraphDiff'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/GraphDiff'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/GraphDiff'
Making install in SGA
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/SGA'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/SGA'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/sga/usr/bin'
  /usr/bin/install -c sga '/<<PKGBUILDDIR>>/debian/sga/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/SGA'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/SGA'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
cp -a src/bin/sga-bam2de.pl	debian/sga/usr/bin/sga-bam2de
cp -a src/bin/sga-astat.py	debian/sga/usr/bin/sga-astat
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a -O--sourcedirectory=src
   dh_installdocs -a -O--sourcedirectory=src
   dh_installchangelogs -a -O--sourcedirectory=src
   debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
mkdir -p debian/sga/usr/share/doc/sga/examples
sed -e 's?^\(SGA_BIN=sga\).*?\1?' \
    -e 's?^.*/bin/sga-align?sga-align?' \
    -e 's?^.*/bin/sga-bam2de.pl?sga-bam2de?' \
    -e 's?^.*/bin/sga-astat.py?sga-astat?' \
    src/examples/sga-celegans.sh > debian/sga/usr/share/doc/sga/examples/sga-celegans.sh
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
mkdir -p /<<PKGBUILDDIR>>/debian/sga/usr/share/man/man1/
PATH=/usr/lib/abyss:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
help2man \
	--version-string="0.10.15" \
	--no-info \
	--name "Make a distance estimate file from a bam file of reads aligned to contigs" \
	--output /<<PKGBUILDDIR>>/debian/sga/usr/share/man/man1//sga-bam2de.1 \
	/<<PKGBUILDDIR>>/debian/sga/usr/bin/sga-bam2de
help2man \
	--no-info \
	--version-string="0.10.15" \
	--name="String Graph Assembler: de novo genome assembler that uses string graphs" \
	--output /<<PKGBUILDDIR>>/debian/sga/usr/share/man/man1//sga.1 \
	/<<PKGBUILDDIR>>/debian/sga/usr/bin/sga
help2man: can't get `--help' info from /<<PKGBUILDDIR>>/debian/sga/usr/bin/sga
Try `--no-discard-stderr' if option outputs to stderr
make[1]: *** [debian/rules:38: override_dh_installman] Error 126
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-11-28T22:23:43Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 308536
Build-Time: 240
Distribution: unstable
Fail-Stage: build
Foreign Architectures: armel
Host Architecture: armel
Install-Time: 13
Job: sga_0.10.15-7
Machine Architecture: amd64
Package: sga
Package-Time: 264
Source-Version: 0.10.15-7
Space: 308536
Status: attempted
Version: 0.10.15-7
--------------------------------------------------------------------------------
Finished at 2022-11-28T22:23:43Z
Build needed 00:04:24, 308536k disk space