sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | shasta 0.14.0-1 (arm64) Tue, 27 Jan 2026 16:25:29 +0000 | +==============================================================================+ Package: shasta Version: 0.14.0-1 Source Version: 0.14.0-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-3472ae1c-c4bf-49df-b190-92692cae8b1c' with '<>' I: NOTICE: Log filtering will replace 'build/shasta-1osjec/resolver-3I690M' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [187 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/main Sources T-2026-01-27-1416.28-F-2026-01-27-0201.40.pdiff [35.7 kB] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2026-01-27-1416.28-F-2026-01-27-1416.28.pdiff [239 B] Get:5 http://localhost:3142/debian unstable/main Sources T-2026-01-27-1416.28-F-2026-01-27-0201.40.pdiff [35.7 kB] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2026-01-27-1416.28-F-2026-01-27-1416.28.pdiff [239 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2026-01-27-1416.28-F-2026-01-27-0201.40.pdiff [37.2 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2026-01-27-1416.28-F-2026-01-27-0201.40.pdiff [37.2 kB] Get:8 http://localhost:3142/debian unstable/main arm64 Packages [10.1 MB] Fetched 10.6 MB in 3s (3608 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc-gconv-modules-extra libc6 libc6-dev login.defs passwd 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7161 kB of archives. After this operation, 19.5 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.42-11 [61.2 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.42-11 [2016 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-11 [1126 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libc6 amd64 2.42-11 [1814 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.42-11 [643 kB] Get:6 http://localhost:3142/debian unstable/main amd64 login.defs all 1:4.19.2-1 [211 kB] Get:7 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.19.2-1 [1289 kB] Preconfiguring packages ... Fetched 7161 kB in 0s (175 MB/s) (Reading database ... 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Setting up libc6-dev:amd64 (2.42-11) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'shasta' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shasta.git Please use: git clone https://salsa.debian.org/med-team/shasta.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.6 MB of source archives. Get:1 http://localhost:3142/debian unstable/main shasta 0.14.0-1 (dsc) [2582 B] Get:2 http://localhost:3142/debian unstable/main shasta 0.14.0-1 (tar) [17.6 MB] Get:3 http://localhost:3142/debian unstable/main shasta 0.14.0-1 (diff) [11.6 kB] Fetched 17.6 MB in 2s (8400 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/shasta-1osjec/shasta-0.14.0' with '<>' I: NOTICE: Log filtering will replace 'build/shasta-1osjec' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, cmake, patchelf, chrpath, libboost-dev, libboost-system-dev, libboost-program-options-dev, libboost-chrono-dev, libboost-serialization-dev, libpng-dev, python3-dev:amd64, libpython3-dev, libseqan2-dev (>= 2.5), libspoa-dev, python3-pybind11, libcereal-dev, libblas-dev, liblapack-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, cmake, patchelf, chrpath, libboost-dev, libboost-system-dev, libboost-program-options-dev, libboost-chrono-dev, libboost-serialization-dev, libpng-dev, python3-dev:amd64, libpython3-dev, libseqan2-dev (>= 2.5), libspoa-dev, python3-pybind11, libcereal-dev, libblas-dev, liblapack-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1063 B] Get:5 copy:/<>/apt_archive ./ Packages [1073 B] Fetched 2751 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils chrpath cmake cmake-data cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-chrono-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-chrono1.83.0t64:arm64 libboost-dev:arm64 libboost-program-options-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-program-options1.83.0:arm64 libboost-serialization-dev:arm64 libboost-serialization1.83-dev:arm64 libboost-serialization1.83.0:arm64 libboost-system-dev:arm64 libboost-system1.83-dev:arm64 libboost-system1.83.0:arm64 libboost1.83-dev:arm64 libbrotli1 libbz2-1.0:arm64 libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcereal-dev:arm64 libcom-err2 libcurl4t64 libdb5.3t64:arm64 libdebhelper-perl libelf1t64 libexpat1 libexpat1:arm64 libexpat1-dev libexpat1-dev:arm64 libfakeroot libffi8 libffi8:arm64 libfile-stripnondeterminism-perl libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgnutls30t64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0 libitm1:arm64 libitm1-arm64-cross libjs-sphinxdoc libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:arm64 liblapack3:arm64 libldap2 liblsan0:arm64 liblsan0-arm64-cross liblzma5:arm64 libmagic-mgc libmagic1t64 libncursesw6 libncursesw6:arm64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libpipeline1 libpng-dev:arm64 libpng16-16t64:arm64 libproc2-0 libpsl5t64 libpython3-dev libpython3-dev:arm64 libpython3-stdlib libpython3.13 libpython3.13:arm64 libpython3.13-dev libpython3.13-dev:arm64 libpython3.13-minimal libpython3.13-minimal:arm64 libpython3.13-stdlib libpython3.13-stdlib:arm64 libreadline8t64 libreadline8t64:arm64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libspoa-dev:arm64 libspoa7.0.0:arm64 libsqlite3-0 libsqlite3-0:arm64 libssh2-1t64 libssl3t64:arm64 libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtasn1-6 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libuuid1:arm64 libuv1t64 libxml2-16 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types netbase patchelf po-debconf procps pybind11-dev python3 python3-dev python3-minimal python3-pybind11 python3.13 python3.13-dev python3.13-minimal rapidjson-dev readline-common sensible-utils zlib1g:arm64 zlib1g-dev zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-15-locales cpp-15-doc cpp-doc dh-make flit python3-build python3-installer python3-wheel gcc-15-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff lrzip liblapack-doc:arm64 libboost-doc:arm64 libboost1.83-doc:arm64 libboost-atomic1.83-dev:arm64 libboost-container1.83-dev:arm64 libboost-context1.83-dev:arm64 libboost-contract1.83-dev:arm64 libboost-coroutine1.83-dev:arm64 libboost-date-time1.83-dev:arm64 libboost-exception1.83-dev:arm64 libboost-fiber1.83-dev:arm64 libboost-filesystem1.83-dev:arm64 libboost-graph-parallel1.83-dev:arm64 libboost-graph1.83-dev:arm64 libboost-iostreams1.83-dev:arm64 libboost-json1.83-dev:arm64 libboost-locale1.83-dev:arm64 libboost-log1.83-dev:arm64 libboost-math1.83-dev:arm64 libboost-mpi-python1.83-dev:arm64 libboost-mpi1.83-dev:arm64 libboost-nowide1.83-dev:arm64 libboost-numpy1.83-dev:arm64 libboost-python1.83-dev:arm64 libboost-random1.83-dev:arm64 libboost-regex1.83-dev:arm64 libboost-stacktrace1.83-dev:arm64 libboost-test1.83-dev:arm64 libboost-thread1.83-dev:arm64 libboost-timer1.83-dev:arm64 libboost-type-erasure1.83-dev:arm64 libboost-url1.83-dev:arm64 libboost-wave1.83-dev:arm64 libboost1.83-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 gnutls-bin krb5-doc krb5-user libstdc++-15-doc:arm64 libtool-doc gfortran | fortran95-compiler uuid-runtime:arm64 m4-doc apparmor less www-browser libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support rapidjson-doc readline-doc Recommended packages: curl | wget | lynx libidn2-0:arm64 ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 libgpm2:arm64 libpng-tools:arm64 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults libeigen3-dev python3-numpy The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils chrpath cmake cmake-data cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-chrono-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-chrono1.83.0t64:arm64 libboost-dev:arm64 libboost-program-options-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-program-options1.83.0:arm64 libboost-serialization-dev:arm64 libboost-serialization1.83-dev:arm64 libboost-serialization1.83.0:arm64 libboost-system-dev:arm64 libboost-system1.83-dev:arm64 libboost-system1.83.0:arm64 libboost1.83-dev:arm64 libbrotli1 libbz2-1.0:arm64 libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcereal-dev:arm64 libcom-err2 libcurl4t64 libdb5.3t64:arm64 libdebhelper-perl libelf1t64 libexpat1 libexpat1:arm64 libexpat1-dev libexpat1-dev:arm64 libfakeroot libffi8 libffi8:arm64 libfile-stripnondeterminism-perl libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgnutls30t64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0 libitm1:arm64 libitm1-arm64-cross libjs-sphinxdoc libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:arm64 liblapack3:arm64 libldap2 liblsan0:arm64 liblsan0-arm64-cross liblzma5:arm64 libmagic-mgc libmagic1t64 libncursesw6 libncursesw6:arm64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libpipeline1 libpng-dev:arm64 libpng16-16t64:arm64 libproc2-0 libpsl5t64 libpython3-dev libpython3-dev:arm64 libpython3-stdlib libpython3.13 libpython3.13:arm64 libpython3.13-dev libpython3.13-dev:arm64 libpython3.13-minimal libpython3.13-minimal:arm64 libpython3.13-stdlib libpython3.13-stdlib:arm64 libreadline8t64 libreadline8t64:arm64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libspoa-dev:arm64 libspoa7.0.0:arm64 libsqlite3-0 libsqlite3-0:arm64 libssh2-1t64 libssl3t64:arm64 libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtasn1-6 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libuuid1:arm64 libuv1t64 libxml2-16 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types netbase patchelf po-debconf procps pybind11-dev python3 python3-dev python3-minimal python3-pybind11 python3.13 python3.13-dev python3.13-minimal rapidjson-dev readline-common sbuild-build-depends-main-dummy:arm64 sensible-utils zlib1g:arm64 zlib1g-dev zlib1g-dev:arm64 0 upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 171 MB of archives. After this operation, 865 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1048 B] Get:2 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-2 [112 kB] Get:3 http://localhost:3142/debian unstable/main arm64 gcc-15-base arm64 15.2.0-12 [54.2 kB] Get:4 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-12 [53.4 kB] Get:5 http://localhost:3142/debian unstable/main arm64 libc-gconv-modules-extra arm64 2.42-11 [1149 kB] Get:6 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.42-11 [1412 kB] Get:7 http://localhost:3142/debian unstable/main arm64 libexpat1 arm64 2.7.3-2 [96.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.11-1+b1 [866 kB] Get:9 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.11-1+b1 [2254 kB] Get:10 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:11 http://localhost:3142/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:12 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:15 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3+b1 [181 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.11-1+b1 [1968 kB] Get:19 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.11-1+b1 [770 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:21 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Get:24 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:27 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:28 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:30 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:31 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.3-3 [99.1 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:33 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:34 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:35 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:36 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:37 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:38 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:39 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.45.90.20260125-1 [1765 kB] Get:40 http://localhost:3142/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get:41 http://localhost:3142/debian unstable/main amd64 cmake-data all 4.2.2-2 [2556 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.8.5-1 [362 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b9 [304 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:51 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1+b1 [444 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.11-3 [1509 kB] Get:64 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.18.0-2 [412 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-5 [82.6 kB] Get:68 http://localhost:3142/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1 [135 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2+b1 [156 kB] Get:70 http://localhost:3142/debian unstable/main amd64 cmake amd64 4.2.2-2 [13.0 MB] Get:71 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu-base amd64 15.2.0-7cross1 [53.5 kB] Get:72 http://localhost:3142/debian unstable/main amd64 cpp-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [12.3 MB] Get:73 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:15.2.0-5 [5320 B] Get:74 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-7cross1 [48.9 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.42-10cross1 [1180 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 15.2.0-7cross1 [53.4 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 15.2.0-7cross1 [93.7 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 15.2.0-7cross1 [25.9 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 15.2.0-7cross1 [10.1 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 15.2.0-7cross1 [442 kB] Get:81 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 15.2.0-7cross1 [210 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 15.2.0-7cross1 [426 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 15.2.0-7cross1 [559 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 15.2.0-7cross1 [193 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 15.2.0-7cross1 [266 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-arm64-cross all 15.2.0-7cross1 [2537 kB] Get:87 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [23.7 MB] Get:88 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:15.2.0-5 [1444 B] Get:89 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.18.5-1cross1 [2366 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.42-10cross1 [1633 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-arm64-cross all 15.2.0-7cross1 [2699 kB] Get:92 http://localhost:3142/debian unstable/main amd64 g++-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [13.3 MB] Get:93 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:15.2.0-5 [1200 B] Get:94 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:95 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.29 [92.6 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:97 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:100 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:101 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:102 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:103 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:104 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:105 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:106 http://localhost:3142/debian unstable/main amd64 debhelper all 13.29 [943 kB] Get:107 http://localhost:3142/debian unstable/main amd64 dh-exec amd64 0.31 [26.1 kB] Get:108 http://localhost:3142/debian unstable/main amd64 dh-python all 7.20260125 [119 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.2-1 [29.9 kB] Get:110 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.2-1 [76.2 kB] Get:111 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 15.2.0-12 [2601 kB] Get:112 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 15.2.0-12 [9852 B] Get:113 http://localhost:3142/debian unstable/main arm64 libblas3 arm64 3.12.1-7+b1 [132 kB] Get:114 http://localhost:3142/debian unstable/main arm64 libblas-dev arm64 3.12.1-7+b1 [142 kB] Get:115 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 15.2.0-12 [126 kB] Get:116 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 15.2.0-12 [24.1 kB] Get:117 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 15.2.0-12 [1194 kB] Get:118 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 15.2.0-12 [2399 kB] Get:119 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 15.2.0-12 [648 kB] Get:120 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 15.2.0-12 [1064 kB] Get:121 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 15.2.0-12 [1479 kB] Get:122 http://localhost:3142/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-12 [2365 kB] Get:123 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.42-11 [1640 kB] Get:124 http://localhost:3142/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-12 [2348 kB] Get:125 http://localhost:3142/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5+b1 [10.6 MB] Get:126 http://localhost:3142/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-5+b1 [240 kB] Get:127 http://localhost:3142/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-5+b1 [246 kB] Get:128 http://localhost:3142/debian unstable/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B] Get:129 http://localhost:3142/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get:130 http://localhost:3142/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-5+b1 [336 kB] Get:131 http://localhost:3142/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-5+b1 [373 kB] Get:132 http://localhost:3142/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get:133 http://localhost:3142/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-5+b1 [327 kB] Get:134 http://localhost:3142/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-5+b1 [391 kB] Get:135 http://localhost:3142/debian unstable/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B] Get:136 http://localhost:3142/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-5+b1 [231 kB] Get:137 http://localhost:3142/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-5+b1 [232 kB] Get:138 http://localhost:3142/debian unstable/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get:139 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6+b1 [37.1 kB] Get:140 http://localhost:3142/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] Get:141 http://localhost:3142/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-6 [221 kB] Get:142 http://localhost:3142/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-11 [626 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-2 [165 kB] Get:144 http://localhost:3142/debian unstable/main arm64 libexpat1-dev arm64 2.7.3-2 [291 kB] Get:145 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.5.2-3+b1 [23.3 kB] Get:146 http://localhost:3142/debian unstable/main arm64 libgfortran5 arm64 15.2.0-12 [372 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Get:148 http://localhost:3142/debian unstable/main arm64 liblapack3 arm64 3.12.1-7+b1 [1815 kB] Get:149 http://localhost:3142/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7+b1 [3747 kB] Get:150 http://localhost:3142/debian unstable/main arm64 liblzma5 arm64 5.8.2-2 [320 kB] Get:151 http://localhost:3142/debian unstable/main arm64 libtinfo6 arm64 6.6+20251231-1 [346 kB] Get:152 http://localhost:3142/debian unstable/main arm64 libncursesw6 arm64 6.6+20251231-1 [125 kB] Get:153 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b2 [85.9 kB] Get:154 http://localhost:3142/debian unstable/main arm64 libpng16-16t64 arm64 1.6.54-1 [275 kB] Get:155 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b2 [917 kB] Get:156 http://localhost:3142/debian unstable/main arm64 libpng-dev arm64 1.6.54-1 [361 kB] Get:157 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-3+b1 [261 kB] Get:158 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.5.4-1+b1 [2725 kB] Get:159 http://localhost:3142/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.11-1+b1 [859 kB] Get:160 http://localhost:3142/debian unstable/main arm64 libreadline8t64 arm64 8.3-3+b1 [168 kB] Get:161 http://localhost:3142/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-9 [854 kB] Get:162 http://localhost:3142/debian unstable/main arm64 libuuid1 arm64 2.41.3-3 [38.2 kB] Get:163 http://localhost:3142/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.11-1+b1 [1903 kB] Get:164 http://localhost:3142/debian unstable/main arm64 libpython3.13 arm64 3.13.11-1+b1 [2059 kB] Get:165 http://localhost:3142/debian unstable/main arm64 libpython3.13-dev arm64 3.13.11-1+b1 [5047 kB] Get:166 http://localhost:3142/debian unstable/main arm64 libpython3-dev arm64 3.13.9-3 [10.8 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libpython3.13 amd64 3.13.11-1+b1 [2185 kB] Get:168 http://localhost:3142/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b2 [919 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libpython3.13-dev amd64 3.13.11-1+b1 [5296 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libpython3-dev amd64 3.13.9-3 [10.8 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libseqan2-dev all 2.5.2-1 [1224 kB] Get:172 http://localhost:3142/debian unstable/main arm64 libspoa7.0.0 arm64 4.1.5-1 [53.7 kB] Get:173 http://localhost:3142/debian unstable/main arm64 libspoa-dev arm64 4.1.5-1 [9656 B] Get:174 http://localhost:3142/debian unstable/main amd64 patchelf amd64 0.18.0-1.4 [99.7 kB] Get:175 http://localhost:3142/debian unstable/main amd64 pybind11-dev all 3.0.1-3 [240 kB] Get:176 http://localhost:3142/debian unstable/main amd64 python3.13-dev amd64 3.13.11-1+b1 [504 kB] Get:177 http://localhost:3142/debian unstable/main amd64 python3-dev amd64 3.13.9-3 [26.0 kB] Get:178 http://localhost:3142/debian unstable/main amd64 python3-pybind11 all 3.0.1-3 [251 kB] Preconfiguring packages ... Fetched 171 MB in 3s (58.8 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12979 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-2) ... Selecting previously unselected package gcc-15-base:arm64. Preparing to unpack .../gcc-15-base_15.2.0-12_arm64.deb ... Unpacking gcc-15-base:arm64 (15.2.0-12) ... Selecting previously unselected package libgcc-s1:arm64. Preparing to unpack .../libgcc-s1_15.2.0-12_arm64.deb ... Unpacking libgcc-s1:arm64 (15.2.0-12) ... Selecting previously unselected package libc-gconv-modules-extra:arm64. Preparing to unpack .../libc-gconv-modules-extra_2.42-11_arm64.deb ... Unpacking libc-gconv-modules-extra:arm64 (2.42-11) ... Selecting previously unselected package libc6:arm64. Preparing to unpack .../libc6_2.42-11_arm64.deb ... Unpacking libc6:arm64 (2.42-11) ... Setting up gcc-15-base:arm64 (15.2.0-12) ... Setting up libc-gconv-modules-extra:arm64 (2.42-11) ... Setting up libgcc-s1:arm64 (15.2.0-12) ... Setting up libc6:arm64 (2.42-11) ... Selecting previously unselected package libexpat1:arm64. (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.11-1+b1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.11-1+b1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.11-1+b1_amd64.deb ... Unpacking python3.13-minimal (3.13.11-1+b1) ... Setting up libpython3.13-minimal:amd64 (3.13.11-1+b1) ... Setting up libexpat1:amd64 (2.7.3-2) ... Setting up libexpat1:arm64 (2.7.3-2) ... Setting up python3.13-minimal (3.13.11-1+b1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13604 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.13.9-3_amd64.deb ... Unpacking python3-minimal (3.13.9-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.5.2-3+b1_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-3+b1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20251231-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20251231-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3+b1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-9_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9) ... Selecting previously unselected package libpython3.13-stdlib:amd64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3+b1) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../144-libsqlite3-0_3.46.1-9_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.46.1-9) ... Selecting previously unselected package libuuid1:arm64. Preparing to unpack .../145-libuuid1_2.41.3-3_arm64.deb ... Unpacking libuuid1:arm64 (2.41.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. 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Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libstdc++6:arm64 (15.2.0-12) ... Setting up chrpath (0.18-1) ... Setting up liblsan0:arm64 (15.2.0-12) ... Setting up libblas-dev:arm64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libitm1:arm64 (15.2.0-12) ... Setting up libtinfo6:arm64 (6.6+20251231-1) ... Setting up libgcc-s1-arm64-cross (15.2.0-7cross1) ... Setting up libatomic1-arm64-cross (15.2.0-7cross1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblsan0-arm64-cross (15.2.0-7cross1) ... Setting up libboost-program-options1.83.0:arm64 (1.83.0-5+b1) ... Setting up cpp-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up libgomp1-arm64-cross (15.2.0-7cross1) ... Setting up liblapack3:arm64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-9) ... Setting up libssl3t64:arm64 (3.5.4-1+b1) ... Setting up libcereal-dev:arm64 (1.3.2+dfsg-6) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... Setting up libhwasan0-arm64-cross (15.2.0-7cross1) ... Setting up libc6-dev-arm64-cross (2.42-10cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (15.2.0-7cross1) ... Setting up libpython3.13-minimal:arm64 (3.13.11-1+b1) ... Setting up dh-autoreconf (21) ... Setting up libboost-serialization1.83.0:arm64 (1.83.0-5+b1) ... Setting up cpp-aarch64-linux-gnu (4:15.2.0-5) ... Setting up libexpat1-dev:arm64 (2.7.3-2) ... Setting up libboost-chrono1.83.0t64:arm64 (1.83.0-5+b1) ... Setting up libp11-kit0:amd64 (0.25.10-1+b1) ... Setting up libspoa7.0.0:arm64 (4.1.5-1) ... Setting up liblapack-dev:arm64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libitm1-arm64-cross (15.2.0-7cross1) ... Setting up libncursesw6:arm64 (6.6+20251231-1) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3+b1) ... Setting up libreadline8t64:arm64 (8.3-3+b1) ... Setting up libubsan1:arm64 (15.2.0-12) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b2) ... Setting up groff-base (1.23.0-10) ... Setting up libasan8-arm64-cross (15.2.0-7cross1) ... Setting up libpython3.13-stdlib:amd64 (3.13.11-1+b1) ... 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Setting up libpython3.13-dev:arm64 (3.13.11-1+b1) ... Setting up libstdc++-15-dev-arm64-cross (15.2.0-7cross1) ... Setting up dh-python (7.20260125) ... Setting up libboost1.83-dev:arm64 (1.83.0-5+b1) ... Setting up gcc-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up libpython3-dev:amd64 (3.13.9-3) ... Setting up libpython3-dev:arm64 (3.13.9-3) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-5+b1) ... Setting up libcurl4t64:amd64 (8.18.0-2) ... Setting up libboost-chrono-dev:arm64 (1.83.0.2+b2) ... Setting up python3.13-dev (3.13.11-1+b1) ... Setting up libboost-program-options1.83-dev:arm64 (1.83.0-5+b1) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-5+b1) ... Setting up debhelper (13.29) ... Setting up dh-exec (0.31) ... Setting up pybind11-dev (3.0.1-3) ... Setting up libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Setting up g++-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up python3-dev (3.13.9-3) ... Setting up libboost-serialization-dev:arm64 (1.83.0.2+b2) ... Setting up cmake (4.2.2-2) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-5+b1) ... Setting up python3-pybind11 (3.0.1-3) ... Setting up gcc-aarch64-linux-gnu (4:15.2.0-5) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up g++-aarch64-linux-gnu (4:15.2.0-5) ... Setting up crossbuild-essential-arm64 (12.12) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.42-11) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any-amd64 arm64 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45.90.20260125-1 dpkg-dev_1.23.5 g++-15_15.2.0-12 gcc-15_15.2.0-12 libc6-dev_2.42-11 libstdc++-15-dev_15.2.0-12 libstdc++-15-dev-arm64-cross_15.2.0-7cross1 libstdc++6_15.2.0-12 libstdc++6-arm64-cross_15.2.0-7cross1 linux-libc-dev_6.18.5-1 Package versions: apt_3.1.14 apt-utils_3.1.14 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 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0.14.0-1 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust , Étienne Mollier Homepage: https://paoloshasta.github.io/shasta/ Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/shasta Vcs-Git: https://salsa.debian.org/med-team/shasta.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, cmake, patchelf, chrpath, libboost-dev, libboost-system-dev, libboost-program-options-dev, libboost-chrono-dev, libboost-serialization-dev, libpng-dev, python3-dev:native, libpython3-dev, libseqan2-dev (>= 2.5), libspoa-dev, python3-pybind11, libcpu-features-dev [any-amd64], libcereal-dev, libblas-dev, liblapack-dev Build-Depends-Indep: python3-sphinx , dh-sequence-sphinxdoc Package-List: python3-shasta deb python optional arch=any-amd64,arm64 python3-shasta-doc deb doc optional arch=all profile=!nodoc shasta deb science optional arch=any-amd64,arm64 Checksums-Sha1: a07a507ef36368960991fa7a4da071f21fa02baa 17601516 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dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cross-build dpkg-source: info: applying debuginfo dpkg-source: info: applying boost1.88.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.57KWRPbUh0/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-3472ae1c-c4bf-49df-b190-92692cae8b1c SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package shasta dpkg-buildpackage: info: source version 0.14.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBUILD_ID=0.14.0 \ -DBUILD_STATIC_EXECUTABLE=OFF \ -DBUILD_DYNAMIC_EXECUTABLE=ON \ -DBUILD_STATIC_LIBRARY=OFF cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/aarch64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DBUILD_ID=0.14.0 -DBUILD_STATIC_EXECUTABLE=OFF -DBUILD_DYNAMIC_EXECUTABLE=ON -DBUILD_STATIC_LIBRARY=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Processor architecture is x86_64 -- CMAKE_SYSTEM_NAME is Linux -- BUILD_STATIC_LIBRARY is OFF -- BUILD_STATIC_EXECUTABLE is OFF -- BUILD_DYNAMIC_LIBRARY is ON -- BUILD_DYNAMIC_EXECUTABLE is ON -- BUILD_NATIVE is OFF -- BUILD_DEBUG is OFF -- BUILD_ID is: 0.14.0 -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-aarch64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/dynamicLibrary /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/dynamicLibrary /<>/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/DependInfo.cmake "--color=" shastaDynamicLibrary make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 1%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o -c /<>/src/Align4.cpp [ 1%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align6.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align6.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Align6.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Align6.cpp.o -c /<>/src/Align6.cpp [ 2%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o -c /<>/src/Alignment.cpp [ 3%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o -c /<>/src/AlignmentGraph.cpp [ 4%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o -c /<>/src/AssembledSegment.cpp [ 4%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Assembler.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Assembler.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Assembler.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Assembler.cpp.o -c /<>/src/Assembler.cpp [ 5%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign.cpp.o -c /<>/src/AssemblerAlign.cpp [ 6%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o -c /<>/src/AssemblerAlign1.cpp [ 7%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o -c /<>/src/AssemblerAlign3.cpp [ 7%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o -c /<>/src/AssemblerAlign4.cpp [ 8%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign5.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign5.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign5.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign5.cpp.o -c /<>/src/AssemblerAlign5.cpp [ 9%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign6.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign6.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign6.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign6.cpp.o -c /<>/src/AssemblerAlign6.cpp [ 10%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentCandidates.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentCandidates.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentCandidates.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentCandidates.cpp.o -c /<>/src/AssemblerAlignmentCandidates.cpp [ 10%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentGraph.cpp.o -c /<>/src/AssemblerAlignmentGraph.cpp [ 11%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignments.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignments.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignments.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignments.cpp.o -c /<>/src/AssemblerAlignments.cpp [ 12%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o -c /<>/src/AssemblerAnalyzePaths.cpp [ 12%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph.cpp.o -c /<>/src/AssemblerAssemblyGraph.cpp In file included from /usr/aarch64-linux-gnu/include/c++/15/bits/ptr_traits.h:35, from /usr/aarch64-linux-gnu/include/c++/15/bits/iterator_concepts.h:39, from /usr/aarch64-linux-gnu/include/c++/15/bits/stl_iterator_base_types.h:73, from /usr/aarch64-linux-gnu/include/c++/15/numeric:63, from /<>/src/invalid.hpp:7, from /<>/src/Alignment.hpp:4, from /<>/src/Assembler.hpp:5, from /<>/src/AssemblerAssemblyGraph.cpp:2: In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = unsigned char]’, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator >; _ForwardIterator2 = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1046:18, inlined from ‘constexpr void std::reverse(_BIter, _BIter) [with _BIter = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1073:21, inlined from ‘void shasta::Assembler::writeGfa1BothStrands(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1274:29: /usr/aarch64-linux-gnu/include/c++/15/bits/move.h:237:11: warning: writing 8 bytes into a region of size between 9223372036854775816 and 6 [-Wstringop-overflow=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ In file included from /usr/aarch64-linux-gnu/include/c++/15/aarch64-linux-gnu/bits/c++allocator.h:33, from /usr/aarch64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/aarch64-linux-gnu/include/c++/15/string:45, from /usr/aarch64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/aarch64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/aarch64-linux-gnu/include/c++/15/ios:46, from /usr/aarch64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/aarch64-linux-gnu/include/c++/15/ostream:42, from /usr/aarch64-linux-gnu/include/c++/15/iostream:43, from /<>/src/iostream.hpp:4, from /<>/src/ReadId.hpp:11, from /<>/src/OrientedReadPair.hpp:5, from /<>/src/Alignment.hpp:5: In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = unsigned char]’, inlined from ‘constexpr _Tp* std::allocator< >::allocate(std::size_t) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/allocator.h:203:40, inlined from ‘static constexpr _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/alloc_traits.h:614:28, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:387:33, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:405:44, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:341:26, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:587:47, inlined from ‘void shasta::Assembler::writeGfa1BothStrands(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1264:48: /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset 9223372036854775802 into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset [9223372036854775801, 9223372036854775802] into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = unsigned char]’, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator >; _ForwardIterator2 = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1046:18, inlined from ‘constexpr void std::reverse(_BIter, _BIter) [with _BIter = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1073:21, inlined from ‘void shasta::Assembler::writeGfa1BothStrands(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1295:33: /usr/aarch64-linux-gnu/include/c++/15/bits/move.h:237:11: warning: writing 8 bytes into a region of size between 9223372036854775816 and 6 [-Wstringop-overflow=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = unsigned char]’, inlined from ‘constexpr _Tp* std::allocator< >::allocate(std::size_t) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/allocator.h:203:40, inlined from ‘static constexpr _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/alloc_traits.h:614:28, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:387:33, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:405:44, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:341:26, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:587:47, inlined from ‘void shasta::Assembler::writeGfa1BothStrands(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1285:53: /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset 9223372036854775802 into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset [9223372036854775801, 9223372036854775802] into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = unsigned char]’, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator >; _ForwardIterator2 = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1046:18, inlined from ‘constexpr void std::reverse(_BIter, _BIter) [with _BIter = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1073:21, inlined from ‘void shasta::Assembler::writeGfa1(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1094:29: /usr/aarch64-linux-gnu/include/c++/15/bits/move.h:237:11: warning: writing 8 bytes into a region of size between 9223372036854775816 and 6 [-Wstringop-overflow=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = unsigned char]’, inlined from ‘constexpr _Tp* std::allocator< >::allocate(std::size_t) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/allocator.h:203:40, inlined from ‘static constexpr _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/alloc_traits.h:614:28, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:387:33, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:405:44, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:341:26, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:587:47, inlined from ‘void shasta::Assembler::writeGfa1(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1084:48: /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset 9223372036854775802 into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset [9223372036854775801, 9223372036854775802] into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = unsigned char]’, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator >; _ForwardIterator2 = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1046:18, inlined from ‘constexpr void std::reverse(_BIter, _BIter) [with _BIter = __gnu_cxx::__normal_iterator >]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_algo.h:1073:21, inlined from ‘void shasta::Assembler::writeGfa1(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1114:33: /usr/aarch64-linux-gnu/include/c++/15/bits/move.h:237:11: warning: writing 8 bytes into a region of size between 9223372036854775816 and 6 [-Wstringop-overflow=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = unsigned char]’, inlined from ‘constexpr _Tp* std::allocator< >::allocate(std::size_t) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/allocator.h:203:40, inlined from ‘static constexpr _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = unsigned char]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/alloc_traits.h:614:28, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:387:33, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:405:44, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:341:26, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = unsigned char; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:587:47, inlined from ‘void shasta::Assembler::writeGfa1(const std::string&)’ at /<>/src/AssemblerAssemblyGraph.cpp:1104:53: /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset 9223372036854775802 into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ /usr/aarch64-linux-gnu/include/c++/15/bits/new_allocator.h:151:73: note: at offset [9223372036854775801, 9223372036854775802] into destination object of size [1, 9223372036854775807] allocated by ‘operator new’ [ 13%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph2.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph2.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph2.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph2.cpp.o -c /<>/src/AssemblerAssemblyGraph2.cpp [ 14%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o -c /<>/src/AssemblerCompressedAssemblyGraph.cpp [ 15%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp.o -c /<>/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp [ 15%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerDetangle.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerDetangle.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerDetangle.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerDetangle.cpp.o -c /<>/src/AssemblerDetangle.cpp [ 16%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Alignments.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Alignments.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Alignments.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Alignments.cpp.o -c /<>/src/AssemblerHttpServer-Alignments.cpp [ 17%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-AssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-AssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-AssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-AssemblyGraph.cpp.o -c /<>/src/AssemblerHttpServer-AssemblyGraph.cpp [ 18%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o -c /<>/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp [ 18%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph0.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph0.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph0.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph0.cpp.o -c /<>/src/AssemblerHttpServer-MarkerGraph0.cpp [ 19%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph1.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph1.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph1.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph1.cpp.o -c /<>/src/AssemblerHttpServer-MarkerGraph1.cpp [ 20%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-ReadGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-ReadGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-ReadGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-ReadGraph.cpp.o -c /<>/src/AssemblerHttpServer-ReadGraph.cpp /<>/src/AssemblerHttpServer-ReadGraph.cpp: In member function ‘void shasta::Assembler::exploreUndirectedReadGraph(const std::vector >&, std::ostream&)’: /<>/src/AssemblerHttpServer-ReadGraph.cpp:468:51: warning: conversion from ‘double’ to ‘int’ may change value [-Wfloat-conversion] 468 | const double residual = abs((x1 - x0) - graph[e].averageAlignmentOffset); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/AssemblerHttpServer-ReadGraph.cpp:623:49: warning: conversion from ‘double’ to ‘int’ may change value [-Wfloat-conversion] 623 | sortedEdges.push_back(make_pair(abs(residual), e)); | ^~~~~~~~ [ 21%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Reads.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT 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-I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerConnectivityGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerConnectivityGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerConnectivityGraph.cpp.o -c /<>/src/AssemblerMarkerConnectivityGraph.cpp [ 24%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result 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-Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphCleanupDuplicateMarkers.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphCleanupDuplicateMarkers.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphCleanupDuplicateMarkers.cpp.o -c /<>/src/AssemblerMarkerGraphCleanupDuplicateMarkers.cpp [ 26%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphEdges.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphEdges.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphEdges.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphEdges.cpp.o -c /<>/src/AssemblerMarkerGraphEdges.cpp [ 26%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkers.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkers.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkers.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkers.cpp.o -c /<>/src/AssemblerMarkers.cpp /<>/src/AssemblerMarkers.cpp: In member function ‘void shasta::Assembler::getOrientedReadAlign6MarkersStrand1(shasta::ReadId, const std::span&) const’: /<>/src/AssemblerMarkers.cpp:554:16: warning: variable ‘orientedReadMarkers1’ set but not used [-Wunused-but-set-variable] 554 | const auto orientedReadMarkers1 = markers[orientedReadId1.getValue()]; | ^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMode3.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMode3.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMode3.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMode3.cpp.o -c /<>/src/AssemblerMode3.cpp [ 28%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o -c /<>/src/AssemblerOptions.cpp [ 29%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o -c /<>/src/AssemblerReadGraph.cpp [ 29%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o -c /<>/src/AssemblerReadGraph2.cpp [ 30%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph3.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph3.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph3.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph3.cpp.o -c /<>/src/AssemblerReadGraph3.cpp [ 31%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph4.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph4.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph4.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph4.cpp.o -c /<>/src/AssemblerReadGraph4.cpp [ 32%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o -c /<>/src/AssemblerReads.cpp [ 32%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph.cpp.o -c /<>/src/AssemblyGraph.cpp [ 33%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph2.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph2.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph2.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph2.cpp.o -c /<>/src/AssemblyGraph2.cpp [ 34%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph.cpp.o -c /<>/src/AssemblyPathGraph.cpp [ 35%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph2.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph2.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph2.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph2.cpp.o -c /<>/src/AssemblyPathGraph2.cpp [ 35%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Base.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Base.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Base.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Base.cpp.o -c /<>/src/Base.cpp [ 36%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/CompactUndirectedGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/CompactUndirectedGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/CompactUndirectedGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/CompactUndirectedGraph.cpp.o -c /<>/src/CompactUndirectedGraph.cpp [ 37%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/CompressedAssemblyGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/CompressedAssemblyGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/CompressedAssemblyGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/CompressedAssemblyGraph.cpp.o -c /<>/src/CompressedAssemblyGraph.cpp In file included from /<>/src/CompressedAssemblyGraph.cpp:2: In copy constructor ‘constexpr shasta::CompressedAssemblyGraphEdge::CompressedAssemblyGraphEdge(const shasta::CompressedAssemblyGraphEdge&)’, inlined from ‘boost::list_edge::list_edge(Vertex, Vertex, const EdgeProperty&) [with Vertex = void*; EdgeProperty = shasta::CompressedAssemblyGraphEdge]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:891:19, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, const typename Config::edge_property_type&, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1496:48, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1522:20, inlined from ‘void shasta::CompressedAssemblyGraph::createEdges(const shasta::mode0::AssemblyGraph&, const std::vector&)’ at /<>/src/CompressedAssemblyGraph.cpp:114:44: /<>/src/CompressedAssemblyGraph.hpp:47:15: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 47 | class shasta::CompressedAssemblyGraphEdge { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/graph/adjacency_list.hpp:255, from /<>/src/CompressedAssemblyGraph.hpp:14: /usr/include/boost/graph/detail/adjacency_list.hpp: In member function ‘void shasta::CompressedAssemblyGraph::createEdges(const shasta::mode0::AssemblyGraph&, const std::vector&)’: /usr/include/boost/graph/detail/adjacency_list.hpp:1521:41: note: ‘p’ declared here 1521 | typename Config::edge_property_type p; | ^ In copy constructor ‘constexpr shasta::CompressedAssemblyGraphEdge::CompressedAssemblyGraphEdge(const shasta::CompressedAssemblyGraphEdge&)’, inlined from ‘boost::list_edge::list_edge(Vertex, Vertex, const EdgeProperty&) [with Vertex = void*; EdgeProperty = shasta::CompressedAssemblyGraphEdge]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:891:19, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, const typename Config::edge_property_type&, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1496:48, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1522:20, inlined from ‘void shasta::CompressedAssemblyGraph::createEdges(const shasta::mode0::AssemblyGraph&, const std::vector&)’ at /<>/src/CompressedAssemblyGraph.cpp:114:44: /<>/src/CompressedAssemblyGraph.hpp:47:15: warning: ‘p.shasta::CompressedAssemblyGraphEdge::maxMarkerCount’ may be used uninitialized [-Wmaybe-uninitialized] 47 | class shasta::CompressedAssemblyGraphEdge { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function ‘void shasta::CompressedAssemblyGraph::createEdges(const shasta::mode0::AssemblyGraph&, const std::vector&)’: /usr/include/boost/graph/detail/adjacency_list.hpp:1521:41: note: ‘p’ declared here 1521 | typename Config::edge_property_type p; | ^ In copy constructor ‘constexpr shasta::CompressedAssemblyGraphEdge::CompressedAssemblyGraphEdge(const shasta::CompressedAssemblyGraphEdge&)’, inlined from ‘boost::list_edge::list_edge(Vertex, Vertex, const EdgeProperty&) [with Vertex = void*; EdgeProperty = shasta::CompressedAssemblyGraphEdge]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:891:19, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, const typename Config::edge_property_type&, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1496:48, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1522:20, inlined from ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’ at /<>/src/CompressedAssemblyGraph.cpp:200:43: /<>/src/CompressedAssemblyGraph.hpp:47:15: warning: ‘p.shasta::CompressedAssemblyGraphEdge::id’ may be used uninitialized [-Wmaybe-uninitialized] 47 | class shasta::CompressedAssemblyGraphEdge { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’: /usr/include/boost/graph/detail/adjacency_list.hpp:1521:41: note: ‘p’ declared here 1521 | typename Config::edge_property_type p; | ^ In copy constructor ‘constexpr shasta::CompressedAssemblyGraphEdge::CompressedAssemblyGraphEdge(const shasta::CompressedAssemblyGraphEdge&)’, inlined from ‘boost::list_edge::list_edge(Vertex, Vertex, const EdgeProperty&) [with Vertex = void*; EdgeProperty = shasta::CompressedAssemblyGraphEdge]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:891:19, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, const typename Config::edge_property_type&, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1496:48, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1522:20, inlined from ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’ at /<>/src/CompressedAssemblyGraph.cpp:200:43: /<>/src/CompressedAssemblyGraph.hpp:47:15: warning: ‘p.shasta::CompressedAssemblyGraphEdge::minMarkerCount’ may be used uninitialized [-Wmaybe-uninitialized] 47 | class shasta::CompressedAssemblyGraphEdge { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’: /usr/include/boost/graph/detail/adjacency_list.hpp:1521:41: note: ‘p’ declared here 1521 | typename Config::edge_property_type p; | ^ In copy constructor ‘constexpr shasta::CompressedAssemblyGraphEdge::CompressedAssemblyGraphEdge(const shasta::CompressedAssemblyGraphEdge&)’, inlined from ‘boost::list_edge::list_edge(Vertex, Vertex, const EdgeProperty&) [with Vertex = void*; EdgeProperty = shasta::CompressedAssemblyGraphEdge]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:891:19, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, const typename Config::edge_property_type&, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1496:48, inlined from ‘std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, bidirectional_graph_helper_with_property&) [with Config = detail::adj_list_gen, listS, listS, bidirectionalS, shasta::CompressedAssemblyGraphVertex, shasta::CompressedAssemblyGraphEdge, no_property, listS>::config]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:1522:20, inlined from ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’ at /<>/src/CompressedAssemblyGraph.cpp:200:43: /<>/src/CompressedAssemblyGraph.hpp:47:15: warning: ‘p.shasta::CompressedAssemblyGraphEdge::maxMarkerCount’ may be used uninitialized [-Wmaybe-uninitialized] 47 | class shasta::CompressedAssemblyGraphEdge { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function ‘void shasta::CompressedAssemblyGraph::mergeLinearChains()’: /usr/include/boost/graph/detail/adjacency_list.hpp:1521:41: note: ‘p’ declared here 1521 | typename Config::edge_property_type p; | ^ [ 37%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/ConfigurationTable.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/ConfigurationTable.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/ConfigurationTable.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/ConfigurationTable.cpp.o -c /<>/src/ConfigurationTable.cpp [ 38%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/ConsensusCaller.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/ConsensusCaller.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/ConsensusCaller.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/ConsensusCaller.cpp.o -c /<>/src/ConsensusCaller.cpp [ 39%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Coverage.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Coverage.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Coverage.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Coverage.cpp.o -c /<>/src/Coverage.cpp [ 40%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/HashedKmerChecker.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/HashedKmerChecker.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/HashedKmerChecker.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/HashedKmerChecker.cpp.o -c /<>/src/HashedKmerChecker.cpp [ 40%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Histogram.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Histogram.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Histogram.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Histogram.cpp.o -c /<>/src/Histogram.cpp [ 41%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/HttpServer.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/HttpServer.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/HttpServer.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/HttpServer.cpp.o -c /<>/src/HttpServer.cpp [ 42%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/InducedAlignment.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT 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-std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle4.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle4.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle4.cpp.o -c /<>/src/mode3-AssemblyGraphDetangle4.cpp [ 87%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphPostprocessor.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphPostprocessor.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphPostprocessor.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphPostprocessor.cpp.o -c /<>/src/mode3-AssemblyGraphPostprocessor.cpp [ 87%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAnchorGraph.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAnchorGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAnchorGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAnchorGraph.cpp.o -c /<>/src/mode3-LocalAnchorGraph.cpp [ 88%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAssembly.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/platformDependent.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/platformDependent.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/platformDependent.cpp.o -c /<>/src/platformDependent.cpp [ 94%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/runCommandWithTimeout.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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-Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/testSubsetGraph.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/testSubsetGraph.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/testSubsetGraph.cpp.o -c /<>/src/testSubsetGraph.cpp [ 97%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/timestamp.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/timestamp.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/timestamp.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/timestamp.cpp.o -c /<>/src/timestamp.cpp [ 98%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/pybind11/include -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o -c /<>/src/touchMemory.cpp [ 99%] Linking CXX shared library shasta.so cd /<>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/shastaDynamicLibrary.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/shastaDynamicLibrary.dir/link.d -Wl,-soname,shasta.so -o shasta.so CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Align6.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Assembler.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign5.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign6.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentCandidates.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignmentGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlignments.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAssemblyGraph.cpp.o 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CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerInducedAlignments.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerLowHash.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerConnectivityGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphCleanupDuplicateMarkers.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkerGraphEdges.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMarkers.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerMode3.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph3.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph4.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o 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CMakeFiles/shastaDynamicLibrary.dir/__/src/MemoryMappedVector.cpp.o "CMakeFiles/shastaDynamicLibrary.dir/__/src/Mode3Assembler-HttpServer.cpp.o" CMakeFiles/shastaDynamicLibrary.dir/__/src/Mode3Assembler.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MultithreadedObject.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MurmurHash2.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PeakFinder.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PhasingGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PngImage.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ProjectedAlignment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PythonModule.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ReadGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ReadLoader.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Reads.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ReferenceOverlapMap.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/SHASTA_ASSERT.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ShortBaseSequence.cpp.o "CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleBayesianConsensusCaller-Builtin.cpp.o" CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleBayesianConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/assembleMarkerGraphPath.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/buildId.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/compressAlignment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/computeRunLengthRepresentation.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/diploidBayesianPhase.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/dset64Test.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/enumeratePaths.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/extractKmer.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/filesystem.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/globalMsa.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/html.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/longestPath.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/mappedCopy.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/markerAccessFunctions.cpp.o "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-Anchor.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AnchorFromJson.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AnchorFromMarkerGraph.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AnchorFromMarkerKmers.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AnchorGraph.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraph-Test.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraph.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle2.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle3.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphDetangle4.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-AssemblyGraphPostprocessor.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAnchorGraph.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAssembly.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-LocalAssemblyGraph.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-PhasedComponent.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-PhasingTable.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-Tangle.cpp.o" "CMakeFiles/shastaDynamicLibrary.dir/__/src/mode3-TangleGraph.cpp.o" CMakeFiles/shastaDynamicLibrary.dir/__/src/performanceLog.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/platformDependent.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/runCommandWithTimeout.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/shastaLapack.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/testSpoa.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/testSubsetGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/timestamp.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o -latomic -lpng -lboost_program_options -lboost_serialization -lpthread -lz -lspoa -llapack -lblas -lpython3.13 -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target shastaDynamicLibrary make -f dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build.make dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/dynamicExecutable /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/dynamicExecutable /<>/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/DependInfo.cmake "--color=" shastaDynamicExecutable make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build.make dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 99%] Building CXX object dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o cd /<>/obj-aarch64-linux-gnu/dynamicExecutable && /usr/bin/aarch64-linux-gnu-g++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.14.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<>/dynamicExecutable/../src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -Wunused-parameter -O3 -MD -MT dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o -MF CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o.d -o CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o -c /<>/srcMain/main.cpp [100%] Linking CXX executable shastaDynamic cd /<>/obj-aarch64-linux-gnu/dynamicExecutable && /usr/bin/cmake -E cmake_link_script CMakeFiles/shastaDynamicExecutable.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/shastaDynamicExecutable.dir/link.d CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o -o shastaDynamic -Wl,-rpath,/<>/obj-aarch64-linux-gnu/dynamicLibrary: ../dynamicLibrary/shasta.so -latomic -lboost_system -lboost_program_options -lboost_chrono -lboost_serialization -lspoa -lpng -lz -llapack -lblas -lpthread -lpython3.13 -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target shastaDynamicExecutable make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/shasta.so -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/shastaDynamic -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AlignOrientedReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AlignOrientedReads1.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AlignOrientedReads4.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AnalyzeAlignmentMatrix.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AnalyzeAssemblyGraphBubbles.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AnalyzeReadGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Assemble.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AssembleMarkerGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AssembleMarkerGraphVertices.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/AssembleSegment.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CheckConfigurations.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CheckMarkerGraphIsStrandSymmetric.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CleanupDuplicateMarkers.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CleanupRunDirectory.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ClusterMarkerGraphEdgeOrientedReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ColorGfaBySimilarityToSegment.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ColorGfaKeySegments.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ColorGfaWithTwoReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeAlignments.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeAssemblyStatistics.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeMarkerGraphCoverageHistogram.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeMarkerGraphVerticesCoverageData.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeReadGraphConnectedComponents.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ComputeSortedMarkers.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Copy.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CopyDirectory.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CountKmers.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateAndCleanupMarkerGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateAssembly.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateAssemblyGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateAssemblyGraphVertices.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateCompressedAssemblyGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateConfigurationTable.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateLocalSubgraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateMarkerGraphAndTransitiveReduction.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateMarkerGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateMarkerGraphEdgesStrict.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateMarkerGraphSecondaryEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateMarkerGraphVertices.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateModules.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreatePrimaryMarkerGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraph2.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraph3.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraph4.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraphMode1.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/CreateReadGraphUsingPseudoPaths.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Detangle.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Detangle2.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FastqGzToFasta.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FastqToFasta.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FastqToFastaAll.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FindAlignmentCandidatesLowHash0.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FindAssemblyGraphBubbles.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FindMarkerGraphReverseComplementEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FindMarkerGraphReverseComplementVertices.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FindMarkers.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FlagChimericReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FlagCrossStrandReadGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FlagInconsistentAlignments.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FlagPalindromicReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/FlagPrimaryMarkerGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/GenerateConfig.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/GenerateFeedback.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/GenerateRandomHaplotypes.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/GetConfig.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/GetReadId.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/HistogramReadLength.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/InstallPrerequisites-Ubuntu-Old.sh -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/InstallPrerequisites-Ubuntu.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/InstallPrerequisites-Ubuntu.sh -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Mode2Assembly-A.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Mode2Assembly-B-Prepare.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Mode2Assembly-B.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Mode3Assembly.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/PruneMarkerGraphStrongSubgraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/ReadGraphClustering.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/RemoveReadGraphBridges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/RestoreRun.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/RunAssemblies.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SaveRun.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SetMarkerGraphEdgeFlags.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SetupRunDirectory.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SetupSmallRunDirectory.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SimpleBayesianConsensusCallerCreateBuiltin.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SimplifyMarkerGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SplitMarkerGraphSecondaryEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/StepSequence1.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/SummarizeAssemblies.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/Test.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/TestSimpleBayesianConsensusCaller.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/TransitiveReduction.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/TravisCheckBuildMacOS.sh -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/TravisCheckBuildUbuntu.sh -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteAlignmentCandidates.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteAssemblyGraph.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteBadMarkerGraphVertices.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteFasta.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteGfa.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteGfaBothStrands.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteLocalAlignmentCandidateReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteLocalReadGraphReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteMarkers.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteOrientedRead.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteOrientedReadPath.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteOrientedReadsBySegment.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteParallelMarkerGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WritePseudoPath.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteRead.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteReadGraphEdges.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/WriteReads.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/comparePhaseAssignments.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/dset64Test.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/generateBandageLabelsFromAlignment.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/bin/testGlobalMsa.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-9.csv -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-8.csv -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-7.csv -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-6.csv -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-5.csv -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/SimpleBayesianConsensusCaller-3.csv -- Installing: 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/<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Phased-R10-Slow-Nov2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Phased-R10-Fast-Nov2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Phased-May2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Phased-Jan2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Phased-Aug2021.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-OldGuppy-Sep2020.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Oct2021.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-May2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Jun2020.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Human-SingleFlowcell-Phased-May2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Human-SingleFlowcell-May2022.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/Nanopore-Dec2019.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/conf/HiFi-Oct2021.conf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/style.css -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/index.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/gpu-acceleration-results.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/doxygen -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/doxygen/README -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/doxygen/Doxyfile -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/SupportedPlatforms.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Superbubble.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Shasta-0.14.0.pdf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Shasta-0.13.0.pdf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Shasta-0.12.0.pdf -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Running.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/ReportingBugs.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/ReadGraph2.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/ReadGraph1.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/RawAlignmentUnmarked.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/RawAlignment.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/QuickStart.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PythonApi -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PythonApi/index.rst -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PythonApi/conf.py -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PythonApi/README -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PythonApi/Makefile -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Python.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Prerequisites.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/PhasedRegionsNaming.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Performance.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Mode3Chain.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Mode3-0.12.0.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Markers.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-8.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-8.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-7.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-7.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-6.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-5.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-4.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-4.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-3.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-3.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-2.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-2.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-1.dot.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerGraph-1.dot -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MarkerAlignment.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/MakeRelease.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Introduction.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/7.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/6.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/5.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/4.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/3.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/2.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/InspectingResults-Images/1.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Detangle-Before.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Detangle-After.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Configurations.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/ComputationalMethods.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Compatibility.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Commands.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/CommandLineOptions.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/ChooseMemoryOptions.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/CZI-new-logo.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/BuildingFromSource.html -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/BubbleChainPath.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/BubbleChain.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Bubble.png -- Installing: /<>/debian/tmp/<>/obj-aarch64-linux-gnu/./shasta-install/docs/Acknowledgments.html make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # Rename shastaDynamic to shasta for ease mv debian/shasta/usr/bin/shastaDynamic debian/shasta/usr/bin/shasta make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python3 -a I: dh_python3 fs:521: renaming shasta.so to shasta.cpython-313-aarch64-linux-gnu.so debian/rules execute_after_dh_python3-arch make[1]: Entering directory '/<>' patchelf \ --set-soname shasta.cpython-313-aarch64-linux-gnu.so \ /<>/debian/python3-shasta/usr/lib/python3/dist-packages/shasta.cpython-313-aarch64-linux-gnu.so make[1]: Leaving directory '/<>' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a debian/rules override_dh_missing make[1]: Entering directory '/<>' # No need to install docker files find debian/tmp -type d -name docker | xargs rm -rf # static library should not be installed find debian/tmp -name shasta.a -delete # dynamic library was installed manually before - so remove it from debian/tmp find debian/tmp -name shasta.so -delete # 11MB of generated docs should go into a separate package if this is considered sensible # FIXME: for the moment do not install these find debian/tmp -name docs | xargs rm -rf # Remove rest of files which have already been installed rm -rf debian/tmp//<> dh_missing --list-missing make[1]: Leaving directory '/<>' debian/rules override_dh_dwz-arch make[1]: Entering directory '/<>' dh_dwz -a --exclude=shasta.cpython make[1]: Leaving directory '/<>' dh_strip -a aarch64-linux-gnu-objcopy: debian/.debhelper/python3-shasta/dbgsym-root/usr/lib/debug/.build-id/b5/4dee5ba3c6d26efda30544740f91b6f07a919a.debug: section `.note.gnu.property' can't be allocated in segment 0 LOAD: .dynsym .gnu.version .gnu.version_r .rela.dyn .rela.plt .init .plt .text .fini .rodata .eh_frame_hdr .eh_frame .gcc_except_table .note.gnu.property dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: cannot extract name and version from library name 'shasta.so' dpkg-shlibdeps: warning: cannot extract name and version from library name 'shasta.so' dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged debian/rules execute_after_dh_shlibdeps make[1]: Entering directory '/<>' # The library is in a more unusual place (nested within /usr/lib), so # modify the ELF chrpath -r /usr/lib/python3/dist-packages \ debian/shasta/usr/bin/shasta debian/shasta/usr/bin/shasta: RUNPATH=/<>/obj-aarch64-linux-gnu/dynamicLibrary: debian/shasta/usr/bin/shasta: new RUNPATH: /usr/lib/python3/dist-packages patchelf \ --replace-needed shasta.so shasta.cpython-313-aarch64-linux-gnu.so \ debian/shasta/usr/bin/shasta make[1]: Leaving directory '/<>' dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'shasta' in '../shasta_0.14.0-1_arm64.deb'. dpkg-deb: building package 'shasta-dbgsym' in '../shasta-dbgsym_0.14.0-1_arm64.deb'. dpkg-deb: building package 'python3-shasta' in '../python3-shasta_0.14.0-1_arm64.deb'. dpkg-deb: building package 'python3-shasta-dbgsym' in '../python3-shasta-dbgsym_0.14.0-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../shasta_0.14.0-1_arm64.buildinfo dpkg-genchanges --build=any -O../shasta_0.14.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-01-27T16:43:42Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------ I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ shasta_0.14.0-1_arm64.changes: ------------------------------ Format: 1.8 Date: Sat, 24 Jan 2026 17:54:34 +0100 Source: shasta Binary: python3-shasta python3-shasta-dbgsym shasta shasta-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 0.14.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-shasta - nanopore whole genome assembly (dynamic library) shasta - nanopore whole genome assembly (binaries and scripts) Closes: 1110602 1125658 Changes: shasta (0.14.0-1) unstable; urgency=medium . [ Michael R. Crusoe ] * Team upload. * New upstream version * Support the "nodoc" and "nocheck" build profiles, increasing cross-buildability. * Added patch to keep debug information. * d/rules: save time by not building the static library. * d/upstream/metadata: new upstream location * d/control: move docs build-deps to the architecture independent list. * Strip unusual field spacing from debian/control. * d/control: Needs newer SeqAn2 2.5.0+. Closes: #1125658 * Standards-Version: 4.7.3 (routine-update) . [ Andreas Tille ] * d/watch: version=5 * Standards-Version: 4.7.2 (routine-update) * Compatibility for boost 1.88 Closes: #1110602 * Salsa CI: release: experimental Checksums-Sha1: d119d7ba72a316e858cce6a5921e4c28fcdb2bd9 64430064 python3-shasta-dbgsym_0.14.0-1_arm64.deb 45686fc9410b67763aaabb1dbd3c675dbe652b57 2375596 python3-shasta_0.14.0-1_arm64.deb 0328a7f695e5af54b278e653c373fa3b70122ac9 1866552 shasta-dbgsym_0.14.0-1_arm64.deb af9a9c8862a757aaad6fbf694edee056799296d3 8333 shasta_0.14.0-1_arm64.buildinfo bd34e9e4eea9b4faf430bb09048b74e9c2bcaabc 633928 shasta_0.14.0-1_arm64.deb Checksums-Sha256: bcf4c32fae1eca727ab238fd5ac1d978969487ed37245d82763d3fa7731e1181 64430064 python3-shasta-dbgsym_0.14.0-1_arm64.deb 5e1a0bc34f69715e96e9612d06ce2ffad5c004de600ae26fee16f0afb76901d4 2375596 python3-shasta_0.14.0-1_arm64.deb 139b6b6d3e6bbd510d7ce263085de15cb04b9caec8e3afdf70c6fd82a2191ee6 1866552 shasta-dbgsym_0.14.0-1_arm64.deb e61bcfdde0a051d19d64788df39d8a4793d5436c22948a65b29baabe66ce2f47 8333 shasta_0.14.0-1_arm64.buildinfo 5d6c86b189f830fc42c521e31bbfa0cc33bf6a8dc67f7d3ffdebf0913d62d366 633928 shasta_0.14.0-1_arm64.deb Files: 3e63556568ac98f2f222b5f31a0ce510 64430064 debug optional python3-shasta-dbgsym_0.14.0-1_arm64.deb 780b01e029db3e3ccd8aa11346b89e8e 2375596 python optional python3-shasta_0.14.0-1_arm64.deb 3415c4bb8354576f2f3ea859b85bc2fc 1866552 debug optional shasta-dbgsym_0.14.0-1_arm64.deb 6db58140fa23d912aae47288719bfa92 8333 science optional shasta_0.14.0-1_arm64.buildinfo 936c8c1ff5d8ed8f94dd3d7514b4f61d 633928 science optional shasta_0.14.0-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: shasta Binary: python3-shasta python3-shasta-dbgsym shasta shasta-dbgsym Architecture: arm64 Version: 0.14.0-1 Checksums-Md5: 3e63556568ac98f2f222b5f31a0ce510 64430064 python3-shasta-dbgsym_0.14.0-1_arm64.deb 780b01e029db3e3ccd8aa11346b89e8e 2375596 python3-shasta_0.14.0-1_arm64.deb 3415c4bb8354576f2f3ea859b85bc2fc 1866552 shasta-dbgsym_0.14.0-1_arm64.deb 936c8c1ff5d8ed8f94dd3d7514b4f61d 633928 shasta_0.14.0-1_arm64.deb Checksums-Sha1: d119d7ba72a316e858cce6a5921e4c28fcdb2bd9 64430064 python3-shasta-dbgsym_0.14.0-1_arm64.deb 45686fc9410b67763aaabb1dbd3c675dbe652b57 2375596 python3-shasta_0.14.0-1_arm64.deb 0328a7f695e5af54b278e653c373fa3b70122ac9 1866552 shasta-dbgsym_0.14.0-1_arm64.deb bd34e9e4eea9b4faf430bb09048b74e9c2bcaabc 633928 shasta_0.14.0-1_arm64.deb Checksums-Sha256: bcf4c32fae1eca727ab238fd5ac1d978969487ed37245d82763d3fa7731e1181 64430064 python3-shasta-dbgsym_0.14.0-1_arm64.deb 5e1a0bc34f69715e96e9612d06ce2ffad5c004de600ae26fee16f0afb76901d4 2375596 python3-shasta_0.14.0-1_arm64.deb 139b6b6d3e6bbd510d7ce263085de15cb04b9caec8e3afdf70c6fd82a2191ee6 1866552 shasta-dbgsym_0.14.0-1_arm64.deb 5d6c86b189f830fc42c521e31bbfa0cc33bf6a8dc67f7d3ffdebf0913d62d366 633928 shasta_0.14.0-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 27 Jan 2026 16:43:41 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45.90.20260125-1), binutils-common (= 2.45.90.20260125-1), binutils-x86-64-linux-gnu (= 2.45.90.20260125-1), bsdextrautils (= 2.41.3-3), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), chrpath (= 0.18-1), cmake (= 4.2.2-2), cmake-data (= 4.2.2-2), coreutils (= 9.7-3), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-12), cpp-15-x86-64-linux-gnu (= 15.2.0-12), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.29), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-exec (= 0.31), dh-python (= 7.20260125), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-12), g++-15-x86-64-linux-gnu (= 15.2.0-12), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-12), gcc-15-base (= 15.2.0-12), gcc-15-x86-64-linux-gnu (= 15.2.0-12), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b2), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.8.5-1), libasan8 (= 15.2.0-12), libatomic1 (= 15.2.0-12), libattr1 (= 1:2.5.2-3+b1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.45.90.20260125-1), libblas-dev (= 3.12.1-7+b1), libblas3 (= 3.12.1-7+b1), libblkid1 (= 2.41.3-3), libboost-chrono-dev (= 1.83.0.2+b2), libboost-chrono1.83-dev (= 1.83.0-5+b1), libboost-chrono1.83.0t64 (= 1.83.0-5+b1), libboost-dev (= 1.83.0.2+b2), libboost-program-options-dev (= 1.83.0.2+b2), libboost-program-options1.83-dev (= 1.83.0-5+b1), libboost-program-options1.83.0 (= 1.83.0-5+b1), libboost-serialization-dev (= 1.83.0.2+b2), libboost-serialization1.83-dev (= 1.83.0-5+b1), libboost-serialization1.83.0 (= 1.83.0-5+b1), libboost-system-dev (= 1.83.0.2+b2), libboost-system1.83-dev (= 1.83.0-5+b1), libboost-system1.83.0 (= 1.83.0-5+b1), libboost1.83-dev (= 1.83.0-5+b1), libbrotli1 (= 1.1.0-2+b9), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-11), libc-dev-bin (= 2.42-11), libc-gconv-modules-extra (= 2.42-11), libc6 (= 2.42-11), libc6-dev (= 2.42-11), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-12), libcereal-dev (= 1.3.2+dfsg-6), libcom-err2 (= 1.47.2-3+b8), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.90.20260125-1), libctf0 (= 2.45.90.20260125-1), libcurl4t64 (= 8.18.0-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.29), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libexpat1 (= 2.7.3-2), libexpat1-dev (= 2.7.3-2), libffi8 (= 3.5.2-3+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-12), libgcc-s1 (= 15.2.0-12), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgfortran5 (= 15.2.0-12), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgnutls30t64 (= 3.8.11-3), libgomp1 (= 15.2.0-12), libgprofng0 (= 2.45.90.20260125-1), libgssapi-krb5-2 (= 1.22.1-2), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-12), libidn2-0 (= 2.3.8-4+b1), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-12), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 8.2.3-12), libjsoncpp26 (= 1.9.6-5), libk5crypto3 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6+b1), libkrb5-3 (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), liblapack-dev (= 3.12.1-7+b1), liblapack3 (= 3.12.1-7+b1), libldap2 (= 2.6.10+dfsg-1+b1), liblsan0 (= 15.2.0-12), liblz4-1 (= 1.10.0-6), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-3), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libncursesw6 (= 6.6+20251231-1), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libp11-kit0 (= 0.25.10-1+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libpng-dev (= 1.6.54-1), libpng16-16t64 (= 1.6.54-1), libproc2-0 (= 2:4.0.4-9+b1), libpsl5t64 (= 0.21.2-1.1+b2), libpython3-dev (= 3.13.9-3), libpython3-stdlib (= 3.13.9-3), libpython3.13 (= 3.13.11-1+b1), libpython3.13-dev (= 3.13.11-1+b1), libpython3.13-minimal (= 3.13.11-1+b1), libpython3.13-stdlib (= 3.13.11-1+b1), libquadmath0 (= 15.2.0-12), libreadline8t64 (= 8.3-3+b1), librhash1 (= 1.4.6-1.1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3+b1), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libseqan2-dev (= 2.5.2-1), libsframe3 (= 2.45.90.20260125-1), libsmartcols1 (= 2.41.3-3), libspoa-dev (= 4.1.5-1), libspoa7.0.0 (= 4.1.5-1), libsqlite3-0 (= 3.46.1-9), libssh2-1t64 (= 1.11.1-1+b1), libssl3t64 (= 3.5.4-1+b1), libstdc++-15-dev (= 15.2.0-12), libstdc++6 (= 15.2.0-12), libsystemd0 (= 259-1), libtasn1-6 (= 4.21.0-2), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-12), libubsan1 (= 15.2.0-12), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-3), libuv1t64 (= 1.51.0-2+b1), libxml2-16 (= 2.15.1+dfsg-2+b1), libxxhash0 (= 0.8.3-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.5-1), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-2), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), openssl-provider-legacy (= 3.5.4-1+b1), patch (= 2.8-2), patchelf (= 0.18.0-1.4), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b1), pybind11-dev (= 3.0.1-3), python3 (= 3.13.9-3), python3-dev (= 3.13.9-3), python3-minimal (= 3.13.9-3), python3-pybind11 (= 3.0.1-3), python3.13 (= 3.13.11-1+b1), python3.13-dev (= 3.13.11-1+b1), python3.13-minimal (= 3.13.11-1+b1), rapidjson-dev (= 1.1.0+dfsg2-7.6), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), tzdata (= 2025c-3), util-linux (= 2.41.3-3), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b2), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1769273674" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-shasta-dbgsym_0.14.0-1_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 64430064 bytes: control archive=544 bytes. 394 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: python3-shasta-dbgsym Source: shasta Version: 0.14.0-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 73799 Depends: python3-shasta (= 0.14.0-1) Section: debug Priority: optional Description: debug symbols for python3-shasta Build-Ids: b54dee5ba3c6d26efda30544740f91b6f07a919a drwxr-xr-x root/root 0 2026-01-24 16:54 ./ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 75559816 2026-01-24 16:54 ./usr/lib/debug/.build-id/b5/4dee5ba3c6d26efda30544740f91b6f07a919a.debug drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-01-24 16:54 ./usr/share/doc/python3-shasta-dbgsym -> python3-shasta python3-shasta_0.14.0-1_arm64.deb --------------------------------- new Debian package, version 2.0. size 2375596 bytes: control archive=1196 bytes. 1532 bytes, 30 lines control 260 bytes, 3 lines md5sums Package: python3-shasta Source: shasta Version: 0.14.0-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 9649 Depends: python3 (<< 3.14), python3 (>= 3.13~), libblas3 | libblas.so.3, libboost-program-options1.83.0 (>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 4.5), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.46), libpython3.13 (>= 3.13.0~rc3), libspoa7.0.0 (>= 4.1.5), libstdc++6 (>= 14), ncbi-blast+ Section: python Priority: optional Homepage: https://paoloshasta.github.io/shasta/ Description: nanopore whole genome assembly (dynamic library) De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. . Computational methods used by the Shasta assembler include: . * Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. . * Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10). . Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers. . 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The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. . Computational methods used by the Shasta assembler include: . * Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. . * Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10). . Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers. . 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19:45 ./usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-5.csv -rw-r--r-- root/root 202440 2025-01-29 19:45 ./usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-6.csv -rw-r--r-- root/root 201973 2025-01-29 19:45 ./usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-7.csv -rw-r--r-- root/root 202423 2025-01-29 19:45 ./usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-8.csv -rw-r--r-- root/root 202469 2025-01-29 19:45 ./usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-9.csv -rw-r--r-- root/root 3547 2025-01-29 19:45 ./usr/share/doc/shasta/generateBandageLabelsFromAlignment.py -rw-r--r-- root/root 1362 2025-01-29 19:45 ./usr/share/doc/shasta/testGlobalMsa.py drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 172 2024-11-27 16:07 ./usr/share/lintian/overrides/shasta drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/man/ drwxr-xr-x root/root 0 2026-01-24 16:54 ./usr/share/man/man1/ -rw-r--r-- root/root 3702 2026-01-24 16:54 ./usr/share/man/man1/shasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1645 B] Get:5 copy:/<>/apt_archive ./ Packages [1691 B] Fetched 3951 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:arm64 shared-mime-info t1utils ucf unzip 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 MB of archives. After this operation, 75.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.4-1+b1 [1496 kB] Get:3 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Get:5 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:6 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.3-4 [1546 kB] Get:8 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.18.0-2 [404 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.3-1 [302 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1+b1 [133 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2 [63.7 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.1-1 [228 kB] Get:15 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.1-1 [562 kB] Get:16 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.58-1+b1 [90.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b1 [62.1 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3+b1 [871 kB] Get:20 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-5 [129 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b2 [136 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b1 [23.6 kB] Get:23 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-5 [639 kB] Get:24 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b3 [10.6 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2+b1 [15.9 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b5 [22.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:35 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:40 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:44 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:54 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.85-1 [24.0 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:74 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:75 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b2 [31.1 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:84 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:91 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [342 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.098-1 [229 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:95 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:103 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:104 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:105 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:106 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16~rc1-1 [39.7 kB] Get:107 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b1 [36.5 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:110 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:115 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.1-1 [143 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4 [11.0 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b1 [12.5 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b1 [42.3 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:128 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:132 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b2 [174 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1 [78.2 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.63-1 [20.4 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB] Get:144 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13~rc1-1 [66.8 kB] Get:145 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:146 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB] Get:147 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:148 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:149 http://localhost:3142/debian unstable/main amd64 lintian all 2.128.1 [1067 kB] Preconfiguring packages ... Fetched 18.1 MB in 0s (123 MB/s) Selecting previously unselected package openssl. (Reading database ... 43306 files and directories currently installed.) Preparing to unpack .../000-openssl_3.5.4-1+b1_amd64.deb ... Unpacking openssl (3.5.4-1+b1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../002-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../003-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../005-libglib2.0-0t64_2.86.3-4_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.86.3-4) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../006-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../007-libngtcp2-crypto-gnutls8_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../008-libcurl3t64-gnutls_8.18.0-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.18.0-2) ... Selecting previously unselected package libfyaml0:amd64. Preparing to unpack .../009-libfyaml0_0.9.3-1_amd64.deb ... Unpacking libfyaml0:amd64 (0.9.3-1) ... Selecting previously unselected package libstemmer0d:amd64. 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Unpacking iso-codes (4.20.1-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../023-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../024-libapt-pkg-perl_0.1.43_amd64.deb ... Unpacking libapt-pkg-perl (0.1.43) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../025-libb-hooks-op-check-perl_0.22-3+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../026-libdynaloader-functions-perl_0.004-2_all.deb ... Unpacking libdynaloader-functions-perl (0.004-2) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../027-libdevel-callchecker-perl_0.009-2+b1_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-2+b1) ... 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Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../082-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../083-libhttp-message-perl_7.01-1_all.deb ... Unpacking libhttp-message-perl (7.01-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../084-libhtml-form-perl_6.13-1_all.deb ... Unpacking libhtml-form-perl (6.13-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../085-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../086-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. 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Unpacking lintian (2.128.1) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:arm64. Preparing to unpack .../148-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43) ... Setting up liblz1:amd64 (1.16~rc1-1) ... Setting up libberkeleydb-perl:amd64 (0.66-2) ... Setting up plzip (1.13~rc1-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b5) ... Setting up libnpth0t64:amd64 (1.8-3+b1) ... Setting up libunicode-utf8-perl (0.63-1) ... Setting up libmouse-perl:amd64 (2.6.1-1) ... Setting up libgpg-error0:amd64 (1.58-1+b1) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4) ... Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.85-1) ... Setting up unzip (6.0-29) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.2-3+b1) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:amd64 (0.9.3-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.3-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libglib2.0-0t64:amd64 (2.86.3-4) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up diffstat (1.68-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b3) ... Setting up libfile-libmagic-perl (1.23-2+b2) ... Setting up ucf (3.0052) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.28-1+b1) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1+b1) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2+b1) ... Setting up gpgconf (2.4.8-5) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libstemmer0d:amd64 (3.0.1-1+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.4-1+b1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up libksba8:amd64 (1.6.7-2+b2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxmlb2:amd64 (0.3.24-2) ... Setting up libcurl3t64-gnutls:amd64 (8.18.0-2) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libappstream5:amd64 (1.1.1-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2+b1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up appstream (1.1.1-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up libio-socket-ssl-perl (2.098-1) ... Setting up gpg (2.4.8-5) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b5) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.81-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.20-1) ... Setting up lintian (2.128.1) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.42-11) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 1060 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 19 Job: shasta_0.14.0-1 Lintian: pass Machine Architecture: amd64 Package: shasta Package-Time: 1093 Source-Version: 0.14.0-1 Space: n/a Status: successful Version: 0.14.0-1 -------------------------------------------------------------------------------- Finished at 2026-01-27T16:43:42Z Build needed 00:18:13, no disk space