sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | ska 1.0+dfsg-2 (mipsel) Wed, 19 Oct 2022 21:51:35 +0000 | +==============================================================================+ Package: ska Version: 1.0+dfsg-2 Source Version: 1.0+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a5908336-2f6e-4965-82c8-f18e63b296f4' with '<>' I: NOTICE: Log filtering will replace 'build/ska-lDCTAu/resolver-jIU8mi' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-19-2015.34-F-2022-10-19-0209.37.pdiff [82.0 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-19-2015.34-F-2022-10-19-0209.37.pdiff [82.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-19-2015.34-F-2022-10-19-0209.37.pdiff [116 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-19-2015.34-F-2022-10-19-0209.37.pdiff [116 kB] Get:6 http://localhost:3142/debian sid/main mipsel Packages [8981 kB] Fetched 9467 kB in 3s (3663 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: perl perl-base 2 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 8871 kB of archives. After this operation, 47.8 MB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 perl-modules-5.36 all 5.36.0-4 [2815 kB] Get:2 http://localhost:3142/debian sid/main amd64 libperl5.36 amd64 5.36.0-4 [4211 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl amd64 5.36.0-4 [238 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.36.0-4 [1607 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8871 kB in 0s (177 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-4_amd64.deb ... Unpacking perl (5.36.0-4) over (5.34.0-5) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../perl-modules-5.36_5.36.0-4_all.deb ... Unpacking perl-modules-5.36 (5.36.0-4) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../libperl5.36_5.36.0-4_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-4) ... Preparing to unpack .../perl-base_5.36.0-4_amd64.deb ... Unpacking perl-base (5.36.0-4) over (5.34.0-5) ... Setting up perl-base (5.36.0-4) ... Setting up perl-modules-5.36 (5.36.0-4) ... Setting up libperl5.36:amd64 (5.36.0-4) ... Setting up perl (5.36.0-4) ... Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ska' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ska.git Please use: git clone https://salsa.debian.org/med-team/ska.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 91.6 kB of source archives. Get:1 http://localhost:3142/debian sid/main ska 1.0+dfsg-2 (dsc) [1935 B] Get:2 http://localhost:3142/debian sid/main ska 1.0+dfsg-2 (tar) [85.6 kB] Get:3 http://localhost:3142/debian sid/main ska 1.0+dfsg-2 (diff) [4092 B] Fetched 91.6 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ska-lDCTAu/ska-1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ska-lDCTAu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [426 B] Get:5 copy:/<>/apt_archive ./ Packages [499 B] Fetched 1882 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu71 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:mipsel libnsl2:mipsel libpipeline1 libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mipsel-linux-gnu gcc-12-doc gcc-12-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel manpages-dev:mipsel krb5-doc:mipsel krb5-user:mipsel libstdc++-11-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl krb5-locales:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu71 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:mipsel libnsl2:mipsel libpipeline1 libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 74.3 MB of archives. After this operation, 298 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1.1+b1 [85.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.0-1+b1 [1342 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mipsel-linux-gnu amd64 2.39-7cross3 [2792 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu-base amd64 12.2.0-5cross2 [36.5 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [8093 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mipsel-linux-gnu amd64 4:12.2.0-4 [3284 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-5cross2 [32.3 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-mipsel-cross all 2.35-3cross2 [977 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-mipsel-cross all 12.2.0-5cross2 [46.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-mipsel-cross all 12.2.0-5cross2 [105 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-mipsel-cross all 12.2.0-5cross2 [6456 B] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mipsel-cross all 12.2.0-5cross2 [267 kB] Get:30 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [15.9 MB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-mipsel-linux-gnu amd64 4:12.2.0-4 [1452 B] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-mipsel-cross all 12.2.0-5cross2 [498 kB] Get:33 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mipsel-cross all 5.19.11-1cross2 [1753 kB] Get:34 http://localhost:3142/debian sid/main amd64 libc6-dev-mipsel-cross all 2.35-3cross2 [1400 kB] Get:35 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mipsel-cross all 12.2.0-5cross2 [2034 kB] Get:36 http://localhost:3142/debian sid/main amd64 g++-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [9016 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-mipsel-linux-gnu amd64 4:12.2.0-4 [1176 B] Get:38 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:39 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:40 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:41 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:47 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:53 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:54 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.10 [79.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:56 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:57 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:58 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:59 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:61 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:62 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:63 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:64 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:65 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:66 http://localhost:3142/debian sid/main amd64 debhelper all 13.10 [940 kB] Get:67 http://localhost:3142/debian sid/main mipsel gcc-11-base mipsel 11.3.0-8 [209 kB] Get:68 http://localhost:3142/debian sid/main mipsel gcc-12-base mipsel 12.2.0-5 [208 kB] Get:69 http://localhost:3142/debian sid/main mipsel libgcc-s1 mipsel 12.2.0-5 [45.7 kB] Get:70 http://localhost:3142/debian sid/main mipsel libc6 mipsel 2.35-3 [2284 kB] Get:71 http://localhost:3142/debian sid/main mipsel libatomic1 mipsel 12.2.0-5 [6708 B] Get:72 http://localhost:3142/debian sid/main mipsel linux-libc-dev mipsel 6.0.2-1 [1640 kB] Get:73 http://localhost:3142/debian sid/main mipsel libcrypt1 mipsel 1:4.4.28-2 [113 kB] Get:74 http://localhost:3142/debian sid/main mipsel libcrypt-dev mipsel 1:4.4.28-2 [144 kB] Get:75 http://localhost:3142/debian sid/main mipsel libcom-err2 mipsel 1.46.6~rc1-1+b1 [14.5 kB] Get:76 http://localhost:3142/debian sid/main mipsel libkrb5support0 mipsel 1.20-1+b1 [31.3 kB] Get:77 http://localhost:3142/debian sid/main mipsel libk5crypto3 mipsel 1.20-1+b1 [83.9 kB] Get:78 http://localhost:3142/debian sid/main mipsel libkeyutils1 mipsel 1.6.3-1 [15.2 kB] Get:79 http://localhost:3142/debian sid/main mipsel libssl3 mipsel 3.0.5-4 [1539 kB] Get:80 http://localhost:3142/debian sid/main mipsel libkrb5-3 mipsel 1.20-1+b1 [302 kB] Get:81 http://localhost:3142/debian sid/main mipsel libgssapi-krb5-2 mipsel 1.20-1+b1 [117 kB] Get:82 http://localhost:3142/debian sid/main mipsel libtirpc3 mipsel 1.3.3+ds-1 [74.3 kB] Get:83 http://localhost:3142/debian sid/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:84 http://localhost:3142/debian sid/main mipsel libtirpc-dev mipsel 1.3.3+ds-1 [197 kB] Get:85 http://localhost:3142/debian sid/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:86 http://localhost:3142/debian sid/main mipsel libc6-dev mipsel 2.35-3 [1404 kB] Get:87 http://localhost:3142/debian sid/main mipsel libgomp1 mipsel 12.2.0-5 [107 kB] Get:88 http://localhost:3142/debian sid/main mipsel libgcc-11-dev mipsel 11.3.0-8 [254 kB] Get:89 http://localhost:3142/debian sid/main mipsel libstdc++6 mipsel 12.2.0-5 [541 kB] Get:90 http://localhost:3142/debian sid/main mipsel libstdc++-11-dev mipsel 11.3.0-8 [1970 kB] Get:91 http://localhost:3142/debian sid/main mipsel zlib1g mipsel 1:1.2.11.dfsg-4.1 [88.3 kB] Get:92 http://localhost:3142/debian sid/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-4.1 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.3 MB in 0s (195 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15646 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4+b3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-9_amd64.deb ... Unpacking gettext-base (0.21-9) ... 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Setting up libatomic1-mipsel-cross (12.2.0-5cross2) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-2) ... Setting up gcc-12-mipsel-linux-gnu-base:amd64 (12.2.0-5cross2) ... Setting up gcc-12-base:mipsel (12.2.0-5) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up binutils-mipsel-linux-gnu (2.39-7cross3) ... Setting up libgomp1-mipsel-cross (12.2.0-5cross2) ... Setting up autopoint (0.21-9) ... Setting up autoconf (2.71-2) ... Setting up linux-libc-dev-mipsel-cross (5.19.11-1cross2) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up cpp-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-9) ... Setting up libc6-dev-mipsel-cross (2.35-3cross2) ... Setting up libtool (2.4.7-4) ... Setting up libgcc-s1-mipsel-cross (12.2.0-5cross2) ... Setting up libgcc-12-dev-mipsel-cross (12.2.0-5cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-mipsel-linux-gnu (4:12.2.0-4) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up gcc-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up libstdc++6-mipsel-cross (12.2.0-5cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.0-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up gcc-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libstdc++-12-dev-mipsel-cross (12.2.0-5cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up debhelper (13.10) ... Setting up g++-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up g++-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libgcc-s1:mipsel (12.2.0-5) ... Setting up libc6:mipsel (2.35-3) ... Setting up libstdc++6:mipsel (12.2.0-5) ... Setting up libkeyutils1:mipsel (1.6.3-1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:mipsel (1:4.4.28-2) ... Setting up libcom-err2:mipsel (1.46.6~rc1-1+b1) ... Setting up libgomp1:mipsel (12.2.0-5) ... Setting up libkrb5support0:mipsel (1.20-1+b1) ... Setting up libatomic1:mipsel (12.2.0-5) ... Setting up libk5crypto3:mipsel (1.20-1+b1) ... Setting up libgcc-11-dev:mipsel (11.3.0-8) ... Setting up libcrypt-dev:mipsel (1:4.4.28-2) ... Setting up libssl3:mipsel (3.0.5-4) ... Setting up libkrb5-3:mipsel (1.20-1+b1) ... Setting up libgssapi-krb5-2:mipsel (1.20-1+b1) ... Setting up libtirpc3:mipsel (1.3.3+ds-1) ... Setting up libtirpc-dev:mipsel (1.3.3+ds-1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.35-3) ... Setting up libstdc++-11-dev:mipsel (11.3.0-8) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-4.1) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.9 g++-11_11.3.0-8 g++-12_12.2.0-5 gcc-11_11.3.0-8 gcc-12_12.2.0-5 libc6-dev_2.35-3 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-mipsel-cross_12.2.0-5cross2 libstdc++6_12.2.0-5 libstdc++6-mipsel-cross_12.2.0-5cross2 linux-libc-dev_6.0.2-1 Package versions: adduser_3.129 apt_2.5.3+b1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-1 binutils_2.39-8 binutils-common_2.39-8 binutils-mipsel-linux-gnu_2.39-7cross3 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-1.1+b1 bsdutils_1:2.38.1-1.1+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-5 cpp-12-mipsel-linux-gnu_12.2.0-5cross2 cpp-mipsel-linux-gnu_4:12.2.0-4 cross-config_2.6.18+nmu2 crossbuild-essential-mipsel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9+b1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-5 g++-12-mipsel-linux-gnu_12.2.0-5cross2 g++-mipsel-linux-gnu_4:12.2.0-4 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-5 gcc-12-base_12.2.0-5 gcc-12-cross-base-mipsen_12.2.0-5cross2 gcc-12-mipsel-linux-gnu_12.2.0-5cross2 gcc-12-mipsel-linux-gnu-base_12.2.0-5cross2 gcc-9-base_9.5.0-2+b1 gcc-mipsel-linux-gnu_4:12.2.0-4 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.39-1+b1 grep_3.8-2 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3+b1 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-5 libatomic1_12.2.0-5 libatomic1-mipsel-cross_12.2.0-5cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbinutils_2.39-8 libblkid1_2.38.1-1.1+b1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.35-3 libc-dev-bin_2.35-3 libc6_2.35-3 libc6-dev_2.35-3 libc6-dev-mipsel-cross_2.35-3cross2 libc6-mipsel-cross_2.35-3cross2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-5 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-8 libctf0_2.39-8 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.9 libelf1_0.187-4 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.29-1 libffi8_3.4.3-2 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-5 libgcc-12-dev-mipsel-cross_12.2.0-5cross2 libgcc-s1_12.2.0-5 libgcc-s1-mipsel-cross_12.2.0-5cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-5 libgomp1-mipsel-cross_12.2.0-5cross2 libgpg-error0_1.45-2 libgprofng0_2.39-8 libgssapi-krb5-2_1.20-1+b1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-5 libk5crypto3_1.20-1+b1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1+b1 libkrb5support0_1.20-1+b1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-5 liblz4-1_1.9.4-1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1+b1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libquadmath0_12.2.0-5 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1+b1 libss2_1.46.6~rc1-1+b1 libssl3_3.0.5-4 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-mipsel-cross_12.2.0-5cross2 libstdc++6_12.2.0-5 libstdc++6-mipsel-cross_12.2.0-5cross2 libsub-override-perl_0.09-4 libsystemd0_251.6-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-8 libtsan2_12.2.0-5 libubsan1_12.2.0-5 libuchardet0_0.0.7-1 libudev1_251.6-1 libunistring2_1.0-2 libuuid1_2.38.1-1.1+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.2-1 linux-libc-dev-mipsel-cross_5.19.11-1cross2 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1+b1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1+b1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022e-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-1.1+b1 util-linux-extra_2.38.1-1.1+b1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ska Binary: ska Architecture: any Version: 1.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/simonrharris/SKA Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ska Vcs-Git: https://salsa.debian.org/med-team/ska.git Build-Depends: debhelper-compat (= 13), zlib1g-dev, googletest Package-List: ska deb science optional arch=any Checksums-Sha1: d5e6350fdb1968c91800d6b704495d54ecc0bfc4 85612 ska_1.0+dfsg.orig.tar.xz 354fa2ce1834de500c5cb03c07866c9df933dac0 4092 ska_1.0+dfsg-2.debian.tar.xz Checksums-Sha256: 1a4aaa448c44b93010ee7dbacd4ff44dcd0876d6f4d9ed20a5ac5bf837e2ab42 85612 ska_1.0+dfsg.orig.tar.xz 83749413f955d5fb21083d388cd9f4b75996d5646e6fa1467b36054ae02677f9 4092 ska_1.0+dfsg-2.debian.tar.xz Files: 6fc4064b3eef8153bee41ead25059339 85612 ska_1.0+dfsg.orig.tar.xz acc5a6dd33da66d354c6301549d6f80d 4092 ska_1.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM6diQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGSSQ//eOY75nB8ruLFzfkqZuL/LEsP4r5xOrld /ZqcyzM6NdWEJpicLRgGWeCpnmveiIAEi0zHBjraHMmq3PgEsiEdDAymkGI+eUNI SeOTR4y2CLigJRPZhs+pwdhXE7w2qdH4XUzjZi8IJIFciGOhLoWOVL31o9kf1xHg 3jINM/PjmjWIJ8Z4vi7552BfdXuuWYmYaGohKED0+lAYe8mdSrxY9Cc88O5WMqKi CHUVHtAaY6XEb9lszGY6z/rgcZRBYgFzzZMlHlPAzQYCJYNeAUbZBs8Y/yXGOc1N Pmelu1GM9sjtEbXcz4YBmAEuSKwTeULon2V+DPPwmiOz1ichUg7OAulgeYmvueVP cN+s9g/bWvv+XJ/pCq0qtHgJYpb9yy8Y9hm7lQQJGM91mG6Vv1qniITNLWUPhSmG RO8zTYIPpsnGoZ1QDdSkfufWTvQKb5e3CbF/S2R0i5UOPGCjvpjq34BGaoy9h317 bJNEGIKEdiPJ/nmKsEYhq+jfpFJ0jjLYHABJxGGLRPOXRCRdwDCpqxPg7Osru5YL VQHATUA4lo/YZMxWAuxGnxFW0f66RTSmU+Ulp4n9dL+GF4wSXLwCfRRm5WhkOFLP HIRjt9aqQTwtC6ZLboxPMbpQIh3sdwuQqF3z/odwKmE9AqUVl/SSM7AbYecgwIkE N6d6P92mAC4= =AEXu -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ypQxn4S_/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 3 05:41:56 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./ska_1.0+dfsg-2.dsc dpkg-source: info: extracting ska in /<> dpkg-source: info: unpacking ska_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking ska_1.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include_vector.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-a5908336-2f6e-4965-82c8-f18e63b296f4 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean dh_auto_clean make -j1 distclean make[1]: Entering directory '/<>' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc make[1]: Entering directory '/<>' mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o mipsel-linux-gnu-g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # do not use broken Makefile which forces /usr/local/bin make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'ska' in '../ska_1.0+dfsg-2_mipsel.deb'. dpkg-deb: building package 'ska-dbgsym' in '../ska-dbgsym_1.0+dfsg-2_mipsel.deb'. dpkg-genbuildinfo --build=any -O../ska_1.0+dfsg-2_mipsel.buildinfo dpkg-genchanges --build=any -O../ska_1.0+dfsg-2_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-10-19T21:52:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ska_1.0+dfsg-2_mipsel.changes: ------------------------------ Format: 1.8 Date: Mon, 03 Oct 2022 07:39:45 +0200 Source: ska Binary: ska ska-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 1.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ska - Split Kmer Analysis Changes: ska (1.0+dfsg-2) unstable; urgency=medium . * Packaging update * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 9f29c4b3ff6b15da14dfc97fe59f85c26291e8da 2319792 ska-dbgsym_1.0+dfsg-2_mipsel.deb 377ffb7ad23f76bf4cc820058ffd9edb9f4a461e 5268 ska_1.0+dfsg-2_mipsel.buildinfo 252795d94548b687d9735e234c8a8c996ae14d97 120528 ska_1.0+dfsg-2_mipsel.deb Checksums-Sha256: bf8708c5359382c4047519bfeb7229adb9cb4c1301aa22bd2b2db333c82109d6 2319792 ska-dbgsym_1.0+dfsg-2_mipsel.deb b7aab22c9caabfed49adf6d8fc7fb5a11b4667c738e164c2044d10fb7a18394b 5268 ska_1.0+dfsg-2_mipsel.buildinfo a394f4bf90d94cc887ac2b0653b57b4996ec92cb215f2b0e214b154c0522412d 120528 ska_1.0+dfsg-2_mipsel.deb Files: 53e0e8a9d550ec6f1d520b2846e9786c 2319792 debug optional ska-dbgsym_1.0+dfsg-2_mipsel.deb ce9fe2ccfc48edf021a493ada3a17602 5268 science optional ska_1.0+dfsg-2_mipsel.buildinfo e50939421ab077baf68db0d2575527d6 120528 science optional ska_1.0+dfsg-2_mipsel.deb /<>/ska_1.0+dfsg-2_mipsel.changes.new could not be renamed to /<>/ska_1.0+dfsg-2_mipsel.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: ska Binary: ska ska-dbgsym Architecture: mipsel Version: 1.0+dfsg-2 Checksums-Md5: 53e0e8a9d550ec6f1d520b2846e9786c 2319792 ska-dbgsym_1.0+dfsg-2_mipsel.deb e50939421ab077baf68db0d2575527d6 120528 ska_1.0+dfsg-2_mipsel.deb Checksums-Sha1: 9f29c4b3ff6b15da14dfc97fe59f85c26291e8da 2319792 ska-dbgsym_1.0+dfsg-2_mipsel.deb 252795d94548b687d9735e234c8a8c996ae14d97 120528 ska_1.0+dfsg-2_mipsel.deb Checksums-Sha256: bf8708c5359382c4047519bfeb7229adb9cb4c1301aa22bd2b2db333c82109d6 2319792 ska-dbgsym_1.0+dfsg-2_mipsel.deb a394f4bf90d94cc887ac2b0653b57b4996ec92cb215f2b0e214b154c0522412d 120528 ska_1.0+dfsg-2_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 19 Oct 2022 21:52:29 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf 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12.2.0-5), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.6-1), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-8), libtsan2 (= 12.2.0-5), libubsan1 (= 12.2.0-5), libuchardet0 (= 0.0.7-1), libudev1 (= 251.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-1.1+b1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 6.0.2-1), login (= 1:4.12.3+dfsg1-1), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.11.0-1+b1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.36.0-4), perl-base (= 5.36.0-4), perl-modules-5.36 (= 5.36.0-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-6), tar (= 1.34+dfsg-1), usrmerge (= 33), util-linux (= 2.38.1-1.1+b1), util-linux-extra (= 2.38.1-1.1+b1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1664775585" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ska-dbgsym_1.0+dfsg-2_mipsel.deb -------------------------------- new Debian package, version 2.0. size 2319792 bytes: control archive=536 bytes. 362 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: ska-dbgsym Source: ska Version: 1.0+dfsg-2 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 2324 Depends: ska (= 1.0+dfsg-2) Section: debug Priority: optional Description: debug symbols for ska Build-Ids: 8a3de8d9bb1f79fb13b7b13f23c3f7efadb00242 drwxr-xr-x root/root 0 2022-10-03 05:39 ./ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 2368684 2022-10-03 05:39 ./usr/lib/debug/.build-id/8a/3de8d9bb1f79fb13b7b13f23c3f7efadb00242.debug drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/share/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-03 05:39 ./usr/share/doc/ska-dbgsym -> ska ska_1.0+dfsg-2_mipsel.deb ------------------------- new Debian package, version 2.0. size 120528 bytes: control archive=1016 bytes. 1067 bytes, 20 lines control 180 bytes, 3 lines md5sums Package: ska Version: 1.0+dfsg-2 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 443 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.2), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/simonrharris/SKA Description: Split Kmer Analysis SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary. drwxr-xr-x root/root 0 2022-10-03 05:39 ./ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/bin/ -rwxr-xr-x root/root 439520 2022-10-03 05:39 ./usr/bin/ska drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/share/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-03 05:39 ./usr/share/doc/ska/ -rw-r--r-- root/root 256 2022-10-03 05:39 ./usr/share/doc/ska/changelog.Debian.gz -rw-r--r-- root/root 4543 2022-10-03 05:39 ./usr/share/doc/ska/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [558 B] Get:5 copy:/<>/apt_archive ./ Packages [627 B] Fetched 2148 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libapt-pkg-perl : Depends: perlapi-5.34.0 but it is not installable libberkeleydb-perl : Depends: perlapi-5.34.0 but it is not installable libclone-perl : Depends: perlapi-5.34.0 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.34.0 but it is not installable liblist-moreutils-xs-perl : Depends: perlapi-5.34.0 but it is not installable libnet-ssleay-perl : Depends: perlapi-5.34.0 but it is not installable libnetaddr-ip-perl : Depends: perlapi-5.34.0 but it is not installable libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.34.0 but it is not installable libparams-util-perl : Depends: perlapi-5.34.0 but it is not installable libsereal-decoder-perl : Depends: perlapi-5.34.0 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.34.0 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.34.0 but it is not installable libtext-xslate-perl : Depends: perlapi-5.34.0 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libtime-moment-perl : Depends: perlapi-5.34.0 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.34.0 but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 26140 Build-Time: 34 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 9 Job: ska_1.0+dfsg-2 Lintian: error Machine Architecture: amd64 Package: ska Package-Time: 55 Source-Version: 1.0+dfsg-2 Space: 26140 Status: successful Version: 1.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-10-19T21:52:30Z Build needed 00:00:55, 26140k disk space