sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snap-aligner 1.0.0+dfsg-2 (mips64el) Sun, 06 Jun 2021 10:15:24 +0000 | +==============================================================================+ Package: snap-aligner Version: 1.0.0+dfsg-2 Source Version: 1.0.0+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f7d95020-79b4-4d7d-8c62-e0a5a8c92c56' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-2EMaVS/resolver-ctwfEb' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [157 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-06-06-0801.11-F-2021-06-06-0801.11.pdiff [311 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-06-06-0801.11-F-2021-06-06-0801.11.pdiff [311 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-06-06-0801.11-F-2021-06-06-0801.11.pdiff [222 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-06-06-0801.11-F-2021-06-06-0801.11.pdiff [222 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8332 kB] Fetched 8617 kB in 3s (3098 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1072 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-2 (dsc) [2243 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-2 (tar) [1061 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-2 (diff) [8976 B] Fetched 1072 kB in 0s (54.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snap-aligner-2EMaVS/snap-aligner-1.0.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-2EMaVS' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [509 B] Fetched 1889 B in 0s (79.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mips64el-linux-gnuabi64 gcc-10-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el gnupg git bzr krb5-doc:mips64el krb5-user:mips64el libstdc++-10-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mips64el libnss-nis:mips64el libnss-nisplus:mips64el libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 94.8 MB of archives. After this operation, 396 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-4 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-4 [4117 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-4 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.1-6 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.4.0-1 [199 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35.2-2cross2 [2361 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-12 [2346 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64-base amd64 10.2.1-6cross1 [202 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mips64el-linux-gnuabi64 amd64 10.2.1-6cross1 [6982 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [16.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.1-6cross1 [197 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-11cross1 [1312 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10.2.1-6cross1 [69.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10.2.1-6cross1 [88.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10.2.1-6cross1 [7380 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mips64el-cross all 10.2.1-6cross1 [270 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64 amd64 10.2.1-6cross1 [13.6 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1480 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10.2.1-6cross1 [392 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.10.28-1cross1 [1418 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-11cross1 [2204 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mips64el-cross all 10.2.1-6cross1 [1768 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mips64el-linux-gnuabi64 amd64 10.2.1-6cross1 [7656 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1192 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-3 [165 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.4 [1049 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.48.3 [190 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.1-6 [69.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.18-4 [93.6 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-12 [2546 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.1-6 [7484 B] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.10.40-1 [1342 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.18-4 [115 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.46.2-1 [73.8 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-5 [63.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-5 [120 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1k-1 [1148 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-5 [328 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-5 [150 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.3.1-1 [74.0 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.3.1-1 [199 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-12 [2204 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.1-6 [90.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.4.0-1 [248 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.1-6 [433 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.4.0-1 [1744 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 94.8 MB in 1s (118 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10487 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_amd64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-4_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4) ... 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Preparing to unpack .../101-libgcc-9-dev_9.4.0-1_mips64el.deb ... Unpacking libgcc-9-dev:mips64el (9.4.0-1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../102-libsimde-dev_0.7.2-4_all.deb ... Unpacking libsimde-dev (0.7.2-4) ... Selecting previously unselected package libstdc++6:mips64el. Preparing to unpack .../103-libstdc++6_10.2.1-6_mips64el.deb ... Unpacking libstdc++6:mips64el (10.2.1-6) ... Selecting previously unselected package libstdc++-9-dev:mips64el. Preparing to unpack .../104-libstdc++-9-dev_9.4.0-1_mips64el.deb ... Unpacking libstdc++-9-dev:mips64el (9.4.0-1) ... Selecting previously unselected package zlib1g:mips64el. Preparing to unpack .../105-zlib1g_1%3a1.2.11.dfsg-2_mips64el.deb ... Unpacking zlib1g:mips64el (1:1.2.11.dfsg-2) ... Selecting previously unselected package zlib1g-dev:mips64el. Preparing to unpack .../106-zlib1g-dev_1%3a1.2.11.dfsg-2_mips64el.deb ... Unpacking zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mips64el. Preparing to unpack .../107-sbuild-build-depends-main-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libsimde-dev (0.7.2-4) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:mips64el (5.10.40-1) ... Setting up libc6-mips64el-cross (2.31-11cross1) ... Setting up gettext-base (0.21-4) ... Setting up gcc-10-mips64el-linux-gnuabi64-base:amd64 (10.2.1-6cross1) ... Setting up file (1:5.39-3) ... Setting up cpp-10-mips64el-linux-gnuabi64 (10.2.1-6cross1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.35.2-2cross2) ... Setting up gcc-10-base:mips64el (10.2.1-6) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up gcc-10-cross-base-mipsen (10.2.1-6cross1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-4) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-12) ... Setting up linux-libc-dev-mips64el-cross (5.10.28-1cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up libgomp1-mips64el-cross (10.2.1-6cross1) ... Setting up libgcc-s1-mips64el-cross (10.2.1-6cross1) ... Setting up libelf1:amd64 (0.183-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:mips64el (9.4.0-1) ... Setting up gettext (0.21-4) ... Setting up libatomic1-mips64el-cross (10.2.1-6cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-4) ... Setting up libc6-dev-mips64el-cross (2.31-11cross1) ... Setting up libgcc-10-dev-mips64el-cross (10.2.1-6cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.69-14) ... Setting up libstdc++6-mips64el-cross (10.2.1-6cross1) ... Setting up libstdc++-10-dev-mips64el-cross (10.2.1-6cross1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up gcc-10-mips64el-linux-gnuabi64 (10.2.1-6cross1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up g++-10-mips64el-linux-gnuabi64 (10.2.1-6cross1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.3) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.3.4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libcrypt1:mips64el (1:4.4.18-4) ... Setting up libgcc-s1:mips64el (10.2.1-6) ... Setting up libc6:mips64el (2.31-12) ... Setting up libcrypt-dev:mips64el (1:4.4.18-4) ... Setting up libstdc++6:mips64el (10.2.1-6) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up libssl1.1:mips64el (1.1.1k-1) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libcom-err2:mips64el (1.46.2-1) ... Setting up libgomp1:mips64el (10.2.1-6) ... Setting up libkrb5support0:mips64el (1.18.3-5) ... Setting up libatomic1:mips64el (10.2.1-6) ... Setting up libk5crypto3:mips64el (1.18.3-5) ... Setting up libkrb5-3:mips64el (1.18.3-5) ... Setting up libgcc-9-dev:mips64el (9.4.0-1) ... Setting up libgssapi-krb5-2:mips64el (1.18.3-5) ... Setting up libtirpc3:mips64el (1.3.1-1) ... Setting up libtirpc-dev:mips64el (1.3.1-1) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.31-12) ... Setting up libstdc++-9-dev:mips64el (9.4.0-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) amd64 (x86_64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mips64el-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-1 libstdc++6_10.2.1-6 libstdc++6-mips64el-cross_10.2.1-6cross1 linux-libc-dev_5.10.40-1 Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 bash_5.1-3 binutils_2.35.2-2 binutils-common_2.35.2-2 binutils-mips64el-linux-gnuabi64_2.35.2-2cross2 binutils-x86-64-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-mips64el-linux-gnuabi64_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-mips64el-linux-gnuabi64_4:10.2.0-1 cross-config_2.6.18+nmu1 crossbuild-essential-mips64el_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.76 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-7 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-mips64el-linux-gnuabi64_10.2.1-6cross1 g++-mips64el-linux-gnuabi64_4:10.2.0-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base-mipsen_10.2.1-6cross1 gcc-10-mips64el-linux-gnuabi64_10.2.1-6cross1 gcc-10-mips64el-linux-gnuabi64-base_10.2.1-6cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-1 gcc-mips64el-linux-gnuabi64_4:10.2.0-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 help2man_1.48.3 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.2.3 libarchive-zip-perl_1.68-1 libasan5_9.4.0-1 libasan6_10.2.1-6 libatomic1_10.2.1-6 libatomic1-mips64el-cross_10.2.1-6cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2 libblkid1_2.36.1-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-12 libc-dev-bin_2.31-12 libc6_2.31-12 libc6-dev_2.31-12 libc6-dev-mips64el-cross_2.31-11cross1 libc6-mips64el-cross_2.31-11cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.46.2-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.259 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.18+nmu1 libdpkg-perl_1.20.9 libelf1_0.183-3 libext2fs2_1.46.2-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-7 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-mips64el-cross_10.2.1-6cross1 libgcc-9-dev_9.4.0-1 libgcc-s1_10.2.1-6 libgcc-s1-mips64el-cross_10.2.1-6cross1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6 libgomp1-mips64el-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-5 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.2-3 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-6 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.2-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-4 libpipeline1_1.5.3-1 libquadmath0_10.2.1-6 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-4 libsmartcols1_2.36.1-7 libss2_1.46.2-1 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mips64el-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-1 libstdc++6_10.2.1-6 libstdc++6-mips64el-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-5 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libuchardet0_0.0.7-1 libudev1_247.3-5 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.40-1 linux-libc-dev-mips64el-cross_5.10.28-1cross1 login_1:4.8.1-1 logsave_1.46.2-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4 perl-base_5.32.1-4 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-4 po-debconf_1.0.21+nmu1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64 Version: 1.0.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: http://snap.cs.berkeley.edu/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,kfreebsd-amd64,ppc64,riscv64,sparc64 Checksums-Sha1: 9d96d8672316ad4f1cab5c4dcfa5b7e281223ee7 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz 004cc0359a6746ad47a0cb8854e0921c72e2bce6 8976 snap-aligner_1.0.0+dfsg-2.debian.tar.xz Checksums-Sha256: 64e1eb4758b067c372e9ff41daabaefec5c8ebff4996fe595b9be67d916c4b3c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz cddd8dcedfccbf16135e438dc976ac2bec8f606f8fa362313516913e66d328ca 8976 snap-aligner_1.0.0+dfsg-2.debian.tar.xz Files: 583e2df4d5b18c8a5c81bd00d83bb66c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz a0de0fbb8f95a7aa60829a2e5eb51039 8976 snap-aligner_1.0.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl/DaOMACgkQPCZ2P2xn 5uLqfQ/8CS9sc5LiLnjn2sA2geFpGWoEGWsVBytOGLYuPEFv1X4hsvGxfbcagL9I QI6Il7RRIuOgnADtQyXs5JuWi94/sMqq4BgUR/wYMvRwFjMX0F6RznzBl2/Rdc4k d+4VUSpM3cDZMM3WKFj8w6NIjcpgiHm4z51F/94mut4IP0QQCBYhQP4I2hApCARw pgX9I7GdF9ruFSyuelg4WsWQFP/4XxqsFRgVREAp21hpP1A8LsxLfOf+pKGWqyvQ +7AStQVMR6QuV+g8bwPE8U5X5n8HN/QJdThSbG5AO7gQs2H8lIeNq42Rctezn+y7 h3ebASN1eGM8jojxg93euvXHMiZF2sv+1q3VEw5UvATWb5ybhmNsnVZHPPEkycvT 8Q/T4OKrav7dKLT1uG5TOT2vpr42IXVnXzqbAELJvj/YyzhwAAPYavD8UdGueaFP 8kP/yE87oa6T9p8+XzyuknfFrB/pJPakXtj+6qzQAS6pZDr9GygIxwgw6NnjoTL6 NWSaYvbE/aEfnEBscsBlyAs6oFgAWOJJr4VLk5DEHB+Qzo/jPclEPxF6xyqkU+HJ 9tlIvUSfMk4NQ9NmHt4g2hFIOdxQPT30A8fEVHcz161vawV9ZmThOqCjkSiC+LqH LGgUkwlkjInBeBH4FazliQAM0zUizabo5Rj5g9ti/0MBYrIh1kU= =pF+c -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.QHZ77fbu/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 29 09:24:51 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snap-aligner_1.0.0+dfsg-2.dsc dpkg-source: info: extracting snap-aligner in /<> dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_segfault.patch dpkg-source: info: applying non-x86-and-kfreebsd dpkg-source: info: applying drop-msse dpkg-source: info: applying spelling dpkg-source: info: applying simde Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-f7d95020-79b4-4d7d-8c62-e0a5a8c92c56 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 1.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/<>' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/AlignerContext.cpp: In member function ‘void AlignerContext::printStats()’: SNAPLib/AlignerContext.cpp:486:75: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 9 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 492 | stats->lvCalls, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/AlignerContext.cpp:486:90: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 494 | stats->totalReads, | ~~~~~~~~~~~~~~~~~ | | | _int64 {aka long int} mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:1751:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1751 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1755:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1755 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1759:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1759 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:1900:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1900:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1904:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1904 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:89:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 89 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:164:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 164 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, (areALTContigsMarked ? GENOME_FLAG_ALT_CONTIGS_MARKED : 0)); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:174:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 174 | fprintf(saveFile, "%lld %x %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:176:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 176 | fprintf(saveFile, "%lld %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:267:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 267 | if (1 != sscanf(contigNameBuffer, "%lld", &contigStart)) { | ~~~^ ~~~~~~~~~~~~ | | | | | _int64* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool, bool*)’: SNAPLib/Genome.cpp:401:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 401 | if (NULL == retval || 2 != sscanf(linebuf,"%lld %d\n", nBases, nContigs)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp:410:31: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 410 | if (3 == sscanf(linebuf, "%lld %d %d\n", nBases, nContigs, &flags)) | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:419:21: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 419 | fprintf(stderr,"%llds\n", (timeInMillis() + 500 - start) / 1000); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/GenomeIndex.cpp:794:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:849:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:849:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1707:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1707:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1708 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ SNAPLib/PairedAligner.cpp: In member function ‘virtual void PairedAlignerContext::runIterationThread()’: SNAPLib/PairedAligner.cpp:618:68: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 618 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1247:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 1247 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu\n", contigs[i].name, end - start); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int GenomeLocation {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1957:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1961 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1957:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1965 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2153:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2157 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2161 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2162 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2358:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2362 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2366 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2367 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2690:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2780:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1183:17: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1183 | commandLine[0] = '\0'; | ~~~~~~~~~~~~~~~^~~~~~ SNAPLib/SAM.cpp:1182:40: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here 1182 | commandLine = new char[commandLineSize]; | ^ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2687:54: note: directive argument in the range [1, 9223372036854775807] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:867, from /usr/mips64el-linux-gnuabi64/include/c++/10/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2690:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2690:52: note: directive argument in the range [1, 9223372036854775807] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:867, from /usr/mips64el-linux-gnuabi64/include/c++/10/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2777:54: note: directive argument in the range [1, 9223372036854775807] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:867, from /usr/mips64el-linux-gnuabi64/include/c++/10/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2780:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2780:52: note: directive argument in the range [1, 9223372036854775807] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:867, from /usr/mips64el-linux-gnuabi64/include/c++/10/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThread()’: SNAPLib/SingleAligner.cpp:181:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 181 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:166:28: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 166 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:169:25: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 169 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp mips64el-linux-gnuabi64-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp mips64el-linux-gnuabi64-g++ -o unit_tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o mips64el-linux-gnuabi64-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/<>' help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="1.0.0" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_1.0.0+dfsg-2_mips64el.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_1.0.0+dfsg-2_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snap-aligner_1.0.0+dfsg-2_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-06-06T10:17:21Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snap-aligner_1.0.0+dfsg-2_mips64el.changes: ------------------------------------------- Format: 1.8 Date: Sun, 29 Nov 2020 10:24:29 +0100 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: snap-aligner - Scalable Nucleotide Alignment Program Changes: snap-aligner (1.0.0+dfsg-2) unstable; urgency=medium . * debian/rules: The file in the examples folder with the incorrect execute bit is from the debian/ directory, so fix the permission there instead of the hack previously used. 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: mips64el Version: 1.0.0+dfsg-2 Checksums-Md5: c63df838654634a62bfd4427a5daeb96 2352528 snap-aligner-dbgsym_1.0.0+dfsg-2_mips64el.deb 1d2219bb4897afec4ab1ed638317084b 753708 snap-aligner_1.0.0+dfsg-2_mips64el.deb Checksums-Sha1: 6f68932ec9a05732b514776dc0c0f4543f5d70d8 2352528 snap-aligner-dbgsym_1.0.0+dfsg-2_mips64el.deb 4a7a91d0a5d9eb9b4e6db7e794ec6bac9905d7ea 753708 snap-aligner_1.0.0+dfsg-2_mips64el.deb Checksums-Sha256: b4207e23109fd95e3a1decf5ec9beab505fcdf3069b3d4588bb352ae2cadb65c 2352528 snap-aligner-dbgsym_1.0.0+dfsg-2_mips64el.deb bc8a634960f1cdfef9a98efd252a07428b41d8c4977b45a3939a9a0158613d53 753708 snap-aligner_1.0.0+dfsg-2_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 06 Jun 2021 10:17:20 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.50), bash (= 5.1-3), binutils (= 2.35.2-2), binutils-common (= 2.35.2-2), binutils-x86-64-linux-gnu (= 2.35.2-2), bsdextrautils (= 2.36.1-7), bsdutils (= 1:2.36.1-7), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.76), debhelper (= 13.3.4), debianutils (= 4.11.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), help2man (= 1.48.3), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-6), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbinutils (= 2.35.2-2), libblkid1 (= 2.36.1-7), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-12), libc-dev-bin (= 2.31-12), libc6 (= 2.31-12), libc6-dev (= 2.31-12), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.46.2-1), libcrypt-dev (= 1:4.4.18-4), libcrypt1 (= 1:4.4.18-4), libctf-nobfd0 (= 2.35.2-2), libctf0 (= 2.35.2-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.259), libdebhelper-perl (= 13.3.4), libdpkg-perl (= 1.20.9), libelf1 (= 0.183-3), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgmp10 (= 2:6.2.1+dfsg-1), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-5), libicu67 (= 67.1-6), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), liblocale-gettext-perl (= 1.07-4+b1), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-7), libpam-modules-bin (= 1.4.0-7), libpam-runtime (= 1.4.0-7), libpam0g (= 1.4.0-7), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-4), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.1-6), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsimde-dev (= 0.7.2-4), libsmartcols1 (= 2.36.1-7), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-5), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.40-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-4), perl-base (= 5.32.1-4), perl-modules-5.32 (= 5.32.1-4), po-debconf (= 1.0.21+nmu1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-7), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606641869" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_1.0.0+dfsg-2_mips64el.deb --------------------------------------------- new Debian package, version 2.0. size 2352528 bytes: control archive=656 bytes. 445 bytes, 12 lines control 308 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 1.0.0+dfsg-2 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2623 Depends: snap-aligner (= 1.0.0+dfsg-2) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: ca1fa392970193e4e1b8cf46041aa1f4397d0725 cf7e3330a34e39d374624d6a9a3fd8833d75c388 drwxr-xr-x root/root 0 2020-11-29 09:24 ./ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 1221368 2020-11-29 09:24 ./usr/lib/debug/.build-id/ca/1fa392970193e4e1b8cf46041aa1f4397d0725.debug drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/.build-id/cf/ -rw-r--r-- root/root 1223000 2020-11-29 09:24 ./usr/lib/debug/.build-id/cf/7e3330a34e39d374624d6a9a3fd8833d75c388.debug drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 226888 2020-11-29 09:24 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/snap-aligner.debug drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-29 09:24 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_1.0.0+dfsg-2_mips64el.deb -------------------------------------- new Debian package, version 2.0. size 753708 bytes: control archive=1780 bytes. 966 bytes, 18 lines control 2565 bytes, 32 lines md5sums Package: snap-aligner Version: 1.0.0+dfsg-2 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2191 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: http://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2020-11-29 09:24 ./ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/bin/ -rwxr-xr-x root/root 867744 2020-11-29 09:24 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 867712 2020-11-29 09:24 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2020-11-28 16:21 ./usr/share/doc-base/snap-aligner-manual -rw-r--r-- root/root 833 2020-07-09 08:59 ./usr/share/doc-base/snap-aligner-quickstart drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2020-11-23 23:42 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78560 2020-11-23 23:42 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2020-07-09 08:59 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1630 2020-11-23 23:42 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2020-07-09 08:59 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 375912 2020-11-23 23:42 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 1449 2020-11-29 09:24 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2020-11-29 07:44 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2020-07-09 08:59 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 1220 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 27 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 1932 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 29 2020-11-28 16:21 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 759 2020-11-29 07:43 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1059 2020-11-28 15:51 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-29 09:24 ./usr/share/man/man1/ -rw-r--r-- root/root 236 2020-11-29 09:24 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 256 2020-11-29 09:24 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 257 2020-11-29 09:24 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 258 2020-11-29 09:24 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 244 2020-11-29 09:24 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [552 B] Get:5 copy:/<>/apt_archive ./ Packages [640 B] Fetched 2155 B in 0s (83.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7627 kB of archives. After this operation, 21.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-2 [73.8 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.4-1 [51.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:11 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libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7627 kB in 0s (27.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21411 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-2_amd64.deb ... Unpacking libreadline8:amd64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.4-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package gpg. 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Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-2) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.08-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libtype-tiny-perl (1.012002-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gpgconf (2.2.27-2) ... Setting up gpg (2.2.27-2) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-12) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 53544 Build-Time: 87 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 19 Job: snap-aligner_1.0.0+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: snap-aligner Package-Time: 117 Source-Version: 1.0.0+dfsg-2 Space: 53544 Status: successful Version: 1.0.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2021-06-06T10:17:21Z Build needed 00:01:57, 53544k disk space