sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snap-aligner 1.0.0+dfsg-3 (mips64el) Mon, 18 Oct 2021 21:24:54 +0000 | +==============================================================================+ Package: snap-aligner Version: 1.0.0+dfsg-3 Source Version: 1.0.0+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8e7debe8-e518-4333-8894-5f366f01fe33' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-6waQZ4/resolver-xIYaGD' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-18-2004.06-F-2021-10-18-0802.03.pdiff [25.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-18-2004.06-F-2021-10-18-0802.03.pdiff [25.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-18-2004.06-F-2021-10-18-0802.03.pdiff [40.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-18-2004.06-F-2021-10-18-0802.03.pdiff [40.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8467 kB] Fetched 8826 kB in 4s (2409 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2529 kB of archives. After this operation, 14.3 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg6.0 amd64 2.3.10 [1025 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 apt amd64 2.3.10 [1505 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2529 kB in 0s (78.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.10_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.10) over (2.3.9) ... Setting up libapt-pkg6.0:amd64 (2.3.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.10_amd64.deb ... Unpacking apt (2.3.10) over (2.3.9) ... Setting up apt (2.3.10) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1072 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (dsc) [2268 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (tar) [1061 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (diff) [8948 B] Fetched 1072 kB in 0s (50.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snap-aligner-6waQZ4/snap-aligner-1.0.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-6waQZ4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1890 B in 0s (77.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-11-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-11-cross-base-mipsen gcc-11-mips64el-linux-gnuabi64 gcc-11-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-11-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:mips64el libstdc++-11-dev libstdc++-11-dev:mips64el libstdc++-11-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc g++-11-multilib-mips64el-linux-gnuabi64 gcc-11-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el glibc-doc manpages-dev:mips64el gnupg git bzr krb5-doc:mips64el krb5-user:mips64el libstdc++-11-doc libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mips64el libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-11-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-11-cross-base-mipsen gcc-11-mips64el-linux-gnuabi64 gcc-11-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-11-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:mips64el libstdc++-11-dev libstdc++-11-dev:mips64el libstdc++-11-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 255 MB of archives. After this operation, 909 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-3 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-11-base mips64el 11.2.0-9 [205 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.37-4cross4 [2447 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-9 [1949 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-9 [49.7 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mips64el-linux-gnuabi64-base amd64 11.2.0-9cross1 [206 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [45.9 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [16.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base-mipsen all 11.2.0-9cross1 [201 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.32-1cross3 [1316 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 11.2.0-9cross1 [70.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 11.2.0-9cross1 [92.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 11.2.0-9cross1 [7360 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-mips64el-cross all 11.2.0-9cross1 [281 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [51.6 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [1476 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 11.2.0-9cross1 [468 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.10.46-4cross3 [1460 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.32-1cross3 [2104 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-mips64el-cross all 11.2.0-9cross1 [1990 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [50.1 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [1188 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.48.5 [143 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 11.2.0-9 [69.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.32-4 [2550 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 11.2.0-9 [7460 B] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.14.12-1 [1426 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.25-2 [95.0 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.25-2 [114 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.46.4-1 [75.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-7 [63.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-7 [120 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1l-1 [1151 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-7 [329 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-7 [150 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.3.2-2 [74.4 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.3.2-2 [199 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.32-4 [2107 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 11.2.0-9 [94.5 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-11-dev mips64el 11.2.0-9 [280 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.7.2-5 [259 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 11.2.0-9 [509 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-11-dev mips64el 11.2.0-9 [1982 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 255 MB in 2s (132 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10546 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-3_amd64.deb ... Unpacking bsdextrautils (2.37.2-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... 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Unpacking g++ (4:11.2.0-2) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../031-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../032-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../033-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-11-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../034-gcc-11-mips64el-linux-gnuabi64-base_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-mips64el-linux-gnuabi64-base:amd64 (11.2.0-9cross1) ... Selecting previously unselected package cpp-11-mips64el-linux-gnuabi64. Preparing to unpack .../035-cpp-11-mips64el-linux-gnuabi64_11.2.0-9cross1_amd64.deb ... Unpacking cpp-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... 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Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../073-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../074-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../075-libelf1_0.185-2_amd64.deb ... Unpacking libelf1:amd64 (0.185-2) ... Selecting previously unselected package dwz. Preparing to unpack .../076-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../077-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../078-intltool-debian_0.35.0+20060710.5_all.deb ... 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Preparing to unpack .../090-libk5crypto3_1.18.3-7_mips64el.deb ... Unpacking libk5crypto3:mips64el (1.18.3-7) ... Selecting previously unselected package libkeyutils1:mips64el. Preparing to unpack .../091-libkeyutils1_1.6.1-2_mips64el.deb ... Unpacking libkeyutils1:mips64el (1.6.1-2) ... Selecting previously unselected package libssl1.1:mips64el. Preparing to unpack .../092-libssl1.1_1.1.1l-1_mips64el.deb ... Unpacking libssl1.1:mips64el (1.1.1l-1) ... Selecting previously unselected package libkrb5-3:mips64el. Preparing to unpack .../093-libkrb5-3_1.18.3-7_mips64el.deb ... Unpacking libkrb5-3:mips64el (1.18.3-7) ... Selecting previously unselected package libgssapi-krb5-2:mips64el. Preparing to unpack .../094-libgssapi-krb5-2_1.18.3-7_mips64el.deb ... Unpacking libgssapi-krb5-2:mips64el (1.18.3-7) ... Selecting previously unselected package libtirpc3:mips64el. Preparing to unpack .../095-libtirpc3_1.3.2-2_mips64el.deb ... Unpacking libtirpc3:mips64el (1.3.2-2) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy:mips64el. Preparing to unpack .../107-sbuild-build-depends-main-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libsimde-dev (0.7.2-5) ... Setting up gcc-11-base:mips64el (11.2.0-9) ... Setting up gcc-11-cross-base-mipsen (11.2.0-9cross1) ... Setting up bsdextrautils (2.37.2-3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:mips64el (5.14.12-1) ... Setting up libc6-mips64el-cross (2.32-1cross3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up binutils-mips64el-linux-gnuabi64 (2.37-4cross4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up gcc-11-mips64el-linux-gnuabi64-base:amd64 (11.2.0-9cross1) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up linux-libc-dev-mips64el-cross (5.10.46-4cross3) ... Setting up cpp-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up libgomp1-mips64el-cross (11.2.0-9cross1) ... Setting up libgcc-s1-mips64el-cross (11.2.0-9cross1) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gettext (0.21-4) ... Setting up libatomic1-mips64el-cross (11.2.0-9cross1) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-6) ... Setting up libc6-dev-mips64el-cross (2.32-1cross3) ... Setting up libgcc-11-dev-mips64el-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libstdc++6-mips64el-cross (11.2.0-9cross1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-9) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up g++-11 (11.2.0-9) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libstdc++-11-dev-mips64el-cross (11.2.0-9cross1) ... Setting up gcc-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up g++-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (11.2.0-9) ... Setting up libc6:mips64el (2.32-4) ... Setting up libstdc++6:mips64el (11.2.0-9) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up libssl1.1:mips64el (1.1.1l-1) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libcrypt1:mips64el (1:4.4.25-2) ... Setting up libcom-err2:mips64el (1.46.4-1) ... Setting up libgomp1:mips64el (11.2.0-9) ... Setting up libkrb5support0:mips64el (1.18.3-7) ... Setting up libatomic1:mips64el (11.2.0-9) ... Setting up libk5crypto3:mips64el (1.18.3-7) ... Setting up libgcc-11-dev:mips64el (11.2.0-9) ... Setting up libcrypt-dev:mips64el (1:4.4.25-2) ... Setting up libkrb5-3:mips64el (1.18.3-7) ... Setting up libgssapi-krb5-2:mips64el (1.18.3-7) ... Setting up libtirpc3:mips64el (1.3.2-2) ... Setting up libtirpc-dev:mips64el (1.3.2-2) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.32-4) ... Setting up libstdc++-11-dev:mips64el (11.2.0-9) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-9 gcc-11_11.2.0-9 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-mips64el-cross_11.2.0-9cross1 libstdc++6_11.2.0-9 libstdc++6-mips64el-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-mips64el-linux-gnuabi64_2.37-4cross4 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-3 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-9 cpp-11-mips64el-linux-gnuabi64_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-mips64el-linux-gnuabi64_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-mips64el_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-3 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-9 g++-11-mips64el-linux-gnuabi64_11.2.0-9cross1 g++-mips64el-linux-gnuabi64_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-9 gcc-11-base_11.2.0-9 gcc-11-cross-base-mipsen_11.2.0-9cross1 gcc-11-mips64el-linux-gnuabi64_11.2.0-9cross1 gcc-11-mips64el-linux-gnuabi64-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-mips64el-linux-gnuabi64_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 help2man_1.48.5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.10 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-9 libatomic1_11.2.0-9 libatomic1-mips64el-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-3 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-mips64el-cross_2.32-1cross3 libc6-mips64el-cross_2.32-1cross3 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-9 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-3 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-9 libgcc-11-dev-mips64el-cross_11.2.0-9cross1 libgcc-s1_11.2.0-9 libgcc-s1-mips64el-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-9 libgomp1-mips64el-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-9 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-9 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-3 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-9 libreadline8_8.1-2 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-5 libsmartcols1_2.37.2-3 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-mips64el-cross_11.2.0-9cross1 libstdc++6_11.2.0-9 libstdc++6-mips64el-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-9 libubsan1_11.2.0-9 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-mips64el-cross_5.10.46-4cross3 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-3 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021d-1 ucf_3.0043 util-linux_2.37.2-3 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64 Version: 1.0.0+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: http://snap.cs.berkeley.edu/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,kfreebsd-amd64,ppc64,riscv64,sparc64 Checksums-Sha1: 9d96d8672316ad4f1cab5c4dcfa5b7e281223ee7 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz 5e9beedd1506637a5e7be579e0597d4496f622db 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz Checksums-Sha256: 64e1eb4758b067c372e9ff41daabaefec5c8ebff4996fe595b9be67d916c4b3c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz 25b687c6ac61ea543c0c249c0d416ea70374f606b37e67ed04f084977f957c24 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz Files: 583e2df4d5b18c8a5c81bd00d83bb66c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz b73bef484994a18da6b2f188eebf5734 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFW168RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEdqQ//cKhb9WcO4C6dVmJE9eiEgjMrsh9Y/MA5 j3xuLmDWe4c7XDmS4i6cGV2Lu7x06wjyJH9OQmUjRC9JwHnRr1wGIT/WfHbCGh0n Uq08E6kJAt6yfzsyRwZzhxdHzRXzM12GTUaL0B7kkeidgsqYxSRZHQP6ZQVtU+zm IfHekSDqZemvc/eKabAL8MxMl0+P3+DEgTJh7rxla3gGsU2BEZCcOjzI5tAEjMcU IonNX+bh5Gnzj6drCeRGr0rgX/XSLSHnOzWQI1NwOtyU/Suv6gcP7ZhlfhnreVpv QfHPJCcHxGNz60Oc2D6jFoCOFQO6NYE5jPsE+pZ6dogdDh0ys5WYlrYDnoxZju2+ FhF6NcUs+u0EqicgoUEtKbV8Yjaqi+c5iDWLuARxr3LorxsclBHAsYL491NlkIDM X6oYdOm3PONF5nrVvRWhy80QiJsWSLINt8o+v1IMe4wYWOTgnUKilCoU6M4OdOYL gNJpl/Vnyn5QQ46qSRfQSlvBRhnzLlL+HZhwqq455zeE004yo8MFHsIdzbOYqcev ZIYGL+2QAig1PRRQ7QJZZd50Vyd0Djp+35piHIS22YUgR5VK4q3Xgr7cpjeZ6TYZ Fner8qiOgQQPgqG9Fd6yqJMfak0BMxbY3AQ5AjX6OEXklXa/+DrtBQsa4r31u2u9 8S4UZqbPmZg= =9/CE -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.WLwCOMZQ/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 1 09:41:03 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snap-aligner_1.0.0+dfsg-3.dsc dpkg-source: info: extracting snap-aligner in /<> dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_segfault.patch dpkg-source: info: applying non-x86-and-kfreebsd dpkg-source: info: applying drop-msse dpkg-source: info: applying spelling dpkg-source: info: applying simde Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8e7debe8-e518-4333-8894-5f366f01fe33 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 1.0.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/<>' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/AlignerContext.cpp: In member function ‘void AlignerContext::printStats()’: SNAPLib/AlignerContext.cpp:486:75: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 9 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 492 | stats->lvCalls, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/AlignerContext.cpp:486:90: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 494 | stats->totalReads, | ~~~~~~~~~~~~~~~~~ | | | _int64 {aka long int} mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:1751:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1751 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1755:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1755 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1759:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1759 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:1900:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1900:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1904:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1904 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld In file included from /usr/mips64el-linux-gnuabi64/include/string.h:519, from /usr/mips64el-linux-gnuabi64/include/memory.h:29, from SNAPLib/stdafx.h:21, from SNAPLib/DataReader.cpp:20: In function ‘void* memset(void*, int, size_t)’, inlined from ‘MemMapDataReader::MemMapDataReader(MemMapDataSupplier*, int, _int64, _int64, _int64)’ at SNAPLib/DataReader.cpp:2254:15: /usr/mips64el-linux-gnuabi64/include/bits/string_fortified.h:56:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 56 | return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:89:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 89 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:164:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 164 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, (areALTContigsMarked ? GENOME_FLAG_ALT_CONTIGS_MARKED : 0)); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:174:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 174 | fprintf(saveFile, "%lld %x %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:176:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 176 | fprintf(saveFile, "%lld %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:267:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 267 | if (1 != sscanf(contigNameBuffer, "%lld", &contigStart)) { | ~~~^ ~~~~~~~~~~~~ | | | | | _int64* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool, bool*)’: SNAPLib/Genome.cpp:401:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 401 | if (NULL == retval || 2 != sscanf(linebuf,"%lld %d\n", nBases, nContigs)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp:410:38: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 410 | if (3 == sscanf(linebuf, "%lld %d %d\n", nBases, nContigs, &flags)) | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:419:28: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 419 | fprintf(stderr,"%llds\n", (timeInMillis() + 500 - start) / 1000); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/GenomeIndex.cpp:794:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:849:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:849:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1707:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1707:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1708 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ SNAPLib/PairedAligner.cpp: In member function ‘virtual void PairedAlignerContext::runIterationThread()’: SNAPLib/PairedAligner.cpp:618:68: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 618 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1247:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 1247 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu\n", contigs[i].name, end - start); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int GenomeLocation {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1957:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1961 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1957:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1965 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2153:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2157 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2161 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2162 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2358:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2362 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2366 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2367 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2690:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2780:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1183:24: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1183 | commandLine[0] = '\0'; | ~~~~~~~~~~~~~~~^~~~~~ SNAPLib/SAM.cpp:1182:47: note: destination object of size 0 allocated by ‘operator new []’ 1182 | commandLine = new char[commandLineSize]; | ^ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2687:54: note: directive argument in the range [1, 9223372036854775807] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:866, from /usr/mips64el-linux-gnuabi64/include/c++/11/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/11/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2690:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2690:52: note: directive argument in the range [1, 9223372036854775807] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:866, from /usr/mips64el-linux-gnuabi64/include/c++/11/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/11/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2777:54: note: directive argument in the range [1, 9223372036854775807] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:866, from /usr/mips64el-linux-gnuabi64/include/c++/11/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/11/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2780:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2780:52: note: directive argument in the range [1, 9223372036854775807] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/stdio.h:866, from /usr/mips64el-linux-gnuabi64/include/c++/11/cstdio:42, from /usr/mips64el-linux-gnuabi64/include/c++/11/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/mips64el-linux-gnuabi64/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThread()’: SNAPLib/SingleAligner.cpp:181:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 181 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:166:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 166 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:169:46: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 169 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp mips64el-linux-gnuabi64-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp mips64el-linux-gnuabi64-g++ -o unit_tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o mips64el-linux-gnuabi64-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/<>' help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="1.0.0" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/snap-aligner/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_1.0.0+dfsg-3_mips64el.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snap-aligner_1.0.0+dfsg-3_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-18T21:27:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snap-aligner_1.0.0+dfsg-3_mips64el.changes: ------------------------------------------- Format: 1.8 Date: Fri, 01 Oct 2021 11:29:05 +0200 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: snap-aligner - Scalable Nucleotide Alignment Program Changes: snap-aligner (1.0.0+dfsg-3) unstable; urgency=medium . * Team upload. * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: fe2d3120257155ac90cabaa0a6c9713efbd97ae7 2294616 snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb 70a017430c7142080377eea177978f186c9063fc 5062 snap-aligner_1.0.0+dfsg-3_mips64el.buildinfo cf7d53e4fccbf8ece9a4c33fa6411b4022ebb5dd 759848 snap-aligner_1.0.0+dfsg-3_mips64el.deb Checksums-Sha256: 6926f822e32b08c069cd66b0e56d33fdb47e68eb4206e8ca2989b363ecb6ae14 2294616 snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb c8f207e6823d10549a0690096d1e24444711c028452095c0f9612c723f6c7ebf 5062 snap-aligner_1.0.0+dfsg-3_mips64el.buildinfo 35b03f598eadcbda4d6618722d842563ee69d62b1fb4a4df4373e6d4d0b02d8d 759848 snap-aligner_1.0.0+dfsg-3_mips64el.deb Files: 0cab800637f30dde7f0103128de1059b 2294616 debug optional snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb 7efe910aedcb7ec61ecde3cd9a891159 5062 science optional snap-aligner_1.0.0+dfsg-3_mips64el.buildinfo 8cd35cb3bcd93f7e16361dccc48184dc 759848 science optional snap-aligner_1.0.0+dfsg-3_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: mips64el Version: 1.0.0+dfsg-3 Checksums-Md5: 0cab800637f30dde7f0103128de1059b 2294616 snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb 8cd35cb3bcd93f7e16361dccc48184dc 759848 snap-aligner_1.0.0+dfsg-3_mips64el.deb Checksums-Sha1: fe2d3120257155ac90cabaa0a6c9713efbd97ae7 2294616 snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb cf7d53e4fccbf8ece9a4c33fa6411b4022ebb5dd 759848 snap-aligner_1.0.0+dfsg-3_mips64el.deb Checksums-Sha256: 6926f822e32b08c069cd66b0e56d33fdb47e68eb4206e8ca2989b363ecb6ae14 2294616 snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb 35b03f598eadcbda4d6618722d842563ee69d62b1fb4a4df4373e6d4d0b02d8d 759848 snap-aligner_1.0.0+dfsg-3_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 18 Oct 2021 21:27:22 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-3), bsdutils (= 1:2.37.2-3), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-9), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-9), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-9), gcc-11-base (= 11.2.0-9), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), help2man (= 1.48.5), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-9), libatomic1 (= 11.2.0-9), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-3), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-9), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-11-dev (= 11.2.0-9), libgcc-s1 (= 11.2.0-9), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libgmp10 (= 2:6.2.1+dfsg-2), libgomp1 (= 11.2.0-9), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-9), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblocale-gettext-perl (= 1.07-4+b1), liblsan0 (= 11.2.0-9), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-3), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libquadmath0 (= 11.2.0-9), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsimde-dev (= 0.7.2-5), libsmartcols1 (= 2.37.2-3), libssl1.1 (= 1.1.1l-1), libstdc++-11-dev (= 11.2.0-9), libstdc++6 (= 11.2.0-9), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-1), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-9), libubsan1 (= 11.2.0-9), libuchardet0 (= 0.0.7-1), libudev1 (= 249.5-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-3), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-3), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1633080545" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_1.0.0+dfsg-3_mips64el.deb --------------------------------------------- new Debian package, version 2.0. size 2294616 bytes: control archive=656 bytes. 445 bytes, 12 lines control 308 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 1.0.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2558 Depends: snap-aligner (= 1.0.0+dfsg-3) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: 166d518c1894eb2ce2d3729482897a3e766efa7f c3bdba7ea8394c1324bf458ef5139fffb9d8e116 drwxr-xr-x root/root 0 2021-10-01 09:29 ./ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/16/ -rw-r--r-- root/root 1167976 2021-10-01 09:29 ./usr/lib/debug/.build-id/16/6d518c1894eb2ce2d3729482897a3e766efa7f.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/c3/ -rw-r--r-- root/root 1169504 2021-10-01 09:29 ./usr/lib/debug/.build-id/c3/bdba7ea8394c1324bf458ef5139fffb9d8e116.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 266736 2021-10-01 09:29 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/snap-aligner.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_1.0.0+dfsg-3_mips64el.deb -------------------------------------- new Debian package, version 2.0. size 759848 bytes: control archive=1780 bytes. 965 bytes, 18 lines control 2591 bytes, 32 lines md5sums Package: snap-aligner Version: 1.0.0+dfsg-3 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2211 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.0), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: http://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2021-10-01 09:29 ./ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/bin/ -rwxr-xr-x root/root 880048 2021-10-01 09:29 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 875920 2021-10-01 09:29 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2021-10-01 09:29 ./usr/share/doc-base/snap-aligner.snap-aligner-manual -rw-r--r-- root/root 833 2021-10-01 09:29 ./usr/share/doc-base/snap-aligner.snap-aligner-quickstart drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2020-11-23 23:42 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78560 2020-11-23 23:42 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2021-10-01 09:29 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1630 2020-11-23 23:42 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2021-10-01 09:29 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 375912 2020-11-23 23:42 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 1508 2021-10-01 09:29 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2021-10-01 09:29 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 1220 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 27 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 1932 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 29 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 759 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1059 2021-10-01 09:29 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/man/man1/ -rw-r--r-- root/root 224 2021-10-01 09:29 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 255 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 256 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 256 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 243 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [552 B] Get:5 copy:/<>/apt_archive ./ Packages [639 B] Fetched 2154 B in 0s (85.5 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7599 kB of archives. After this operation, 21.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.27-1 [129 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-2 [60.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.109.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7599 kB in 0s (33.0 MB/s) Selecting previously unselected package diffstat. (Reading database ... 20663 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.109.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 42904 Build-Time: 92 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 40 Job: snap-aligner_1.0.0+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: snap-aligner Package-Time: 148 Source-Version: 1.0.0+dfsg-3 Space: 42904 Status: successful Version: 1.0.0+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-10-18T21:27:22Z Build needed 00:02:28, 42904k disk space