sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snap-aligner 1.0.0+dfsg-3 (s390x) Sun, 10 Oct 2021 00:00:44 +0000 | +==============================================================================+ Package: snap-aligner Version: 1.0.0+dfsg-3 Source Version: 1.0.0+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3a6437fa-e126-4bf6-86cd-570bede60ff2' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-TBVRNF/resolver-5srTQ6' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-09-2001.20-F-2021-10-09-1409.27.pdiff [33.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-09-2001.20-F-2021-10-09-1409.27.pdiff [33.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-09-2001.20-F-2021-10-09-1409.27.pdiff [32.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-09-2001.20-F-2021-10-09-1409.27.pdiff [32.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8402 kB] Fetched 8759 kB in 4s (2359 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libaudit-common libaudit1 libp11-kit0 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 414 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libaudit-common all 1:3.0.6-1 [15.8 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libaudit1 amd64 1:3.0.6-1 [52.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libp11-kit0 amd64 0.24.0-5 [346 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 414 kB in 0s (7509 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10535 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.6-1_all.deb ... Unpacking libaudit-common (1:3.0.6-1) over (1:3.0.5-1) ... Setting up libaudit-common (1:3.0.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10535 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.6-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0.6-1) over (1:3.0.5-1) ... Setting up libaudit1:amd64 (1:3.0.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10535 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.0-5_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.0-5) over (0.24.0-3) ... Setting up libp11-kit0:amd64 (0.24.0-5) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1072 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (dsc) [2268 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (tar) [1061 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main snap-aligner 1.0.0+dfsg-3 (diff) [8948 B] Fetched 1072 kB in 0s (43.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snap-aligner-TBVRNF/snap-aligner-1.0.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-TBVRNF' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1888 B in 0s (74.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x glibc-doc manpages-dev:s390x gnupg git bzr krb5-doc:s390x krb5-user:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libperl5.32 libpipeline1 libsigsegv2 libsimde-dev libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 204 MB of archives. After this operation, 878 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-3 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-11-base s390x 11.2.0-8 [205 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.4.0-3 [200 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.37-7 [2070 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.3.0-11 [1750 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.3.0-11 [9434 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.3.0-8cross1 [205 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.3.0-8cross1 [41.1 MB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-5cross1 [201 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.32-1cross4 [1236 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 11.2.0-5cross1 [24.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 11.2.0-5cross1 [94.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 11.2.0-5cross1 [24.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 11.2.0-5cross1 [7924 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 11.2.0-5cross1 [1909 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 11.2.0-5cross1 [527 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 11.2.0-5cross1 [804 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.3.0-8cross1 [658 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.3.0-8cross1 [46.3 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.1-1 [1456 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.10.46-4cross4 [1467 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.32-1cross4 [1856 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.3.0-8cross1 [1693 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.3.0-8cross1 [44.2 MB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.1-1 [1176 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.48.5 [143 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 11.2.0-8 [24.6 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.32-4 [2452 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.4.0-3 [2551 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 11.2.0-8 [8064 B] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.14.9-2 [1425 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.25-2 [89.6 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.25-2 [105 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.46.4-1 [75.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-7 [64.6 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-7 [112 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1l-1 [1217 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-7 [341 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-7 [154 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.3.2-2 [78.0 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.3.2-2 [185 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.32-4 [1881 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 11.2.0-8 [96.8 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 11.2.0-8 [25.2 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 11.2.0-8 [568 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 11.2.0-8 [805 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.4.0-3 [679 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.4.0-3 [1682 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 204 MB in 2s (130 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10535 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-3_amd64.deb ... Unpacking bsdextrautils (2.37.2-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... 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Setting up libsimde-dev (0.7.2-4) ... Setting up gcc-11-base:s390x (11.2.0-8) ... Setting up binutils-s390x-linux-gnu (2.37-7) ... Setting up bsdextrautils (2.37.2-3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libc6-s390x-cross (2.32-1cross4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:s390x (5.14.9-2) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (5.10.46-4cross4) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up gcc-10-cross-base (10.3.0-8cross1) ... Setting up gcc-11-cross-base (11.2.0-5cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libc6-dev-s390x-cross (2.32-1cross4) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libgomp1-s390x-cross (11.2.0-5cross1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.3.0-8cross1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:s390x (9.4.0-3) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-11) ... Setting up g++-10 (10.3.0-11) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-s390x-cross (11.2.0-5cross1) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-6) ... Setting up libgcc-s1-s390x-cross (11.2.0-5cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libitm1-s390x-cross (11.2.0-5cross1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up cpp-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up cpp-s390x-linux-gnu (4:10.2.1-1) ... Setting up libstdc++6-s390x-cross (11.2.0-5cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (11.2.0-5cross1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libubsan1-s390x-cross (11.2.0-5cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.3.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.3.0-8cross1) ... Setting up debhelper (13.5.2) ... Setting up gcc-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.3.0-8cross1) ... Setting up g++-s390x-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (11.2.0-8) ... Setting up libc6:s390x (2.32-4) ... Setting up libstdc++6:s390x (11.2.0-8) ... Setting up libitm1:s390x (11.2.0-8) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up libssl1.1:s390x (1.1.1l-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libcrypt1:s390x (1:4.4.25-2) ... Setting up libcom-err2:s390x (1.46.4-1) ... Setting up libgomp1:s390x (11.2.0-8) ... Setting up libkrb5support0:s390x (1.18.3-7) ... Setting up libasan5:s390x (9.4.0-3) ... Setting up libatomic1:s390x (11.2.0-8) ... Setting up libk5crypto3:s390x (1.18.3-7) ... Setting up libubsan1:s390x (11.2.0-8) ... Setting up libcrypt-dev:s390x (1:4.4.25-2) ... Setting up libkrb5-3:s390x (1.18.3-7) ... Setting up libgcc-9-dev:s390x (9.4.0-3) ... Setting up libgssapi-krb5-2:s390x (1.18.3-7) ... Setting up libtirpc3:s390x (1.3.2-2) ... Setting up libtirpc-dev:s390x (1.3.2-2) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.32-4) ... Setting up libstdc++-9-dev:s390x (9.4.0-3) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-10_10.3.0-11 gcc-10_10.3.0-11 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-10-dev-s390x-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-8 libstdc++6-s390x-cross_11.2.0-5cross1 linux-libc-dev_5.14.9-2 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-s390x-linux-gnu_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-3 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.3.0-11 cpp-10-s390x-linux-gnu_10.3.0-8cross1 cpp-8_8.4.0-7 cpp-s390x-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu2 crossbuild-essential-s390x_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-3 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.3.0-11 g++-10-s390x-linux-gnu_10.3.0-8cross1 g++-s390x-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.3.0-11 gcc-10-base_10.3.0-11 gcc-10-cross-base_10.3.0-8cross1 gcc-10-s390x-linux-gnu_10.3.0-8cross1 gcc-10-s390x-linux-gnu-base_10.3.0-8cross1 gcc-11-base_11.2.0-8 gcc-11-cross-base_11.2.0-5cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-s390x-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 help2man_1.48.5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-8 libasan6-s390x-cross_11.2.0-5cross1 libatomic1_11.2.0-8 libatomic1-s390x-cross_11.2.0-5cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-3 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-s390x-cross_2.32-1cross4 libc6-s390x-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-8 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-3 libffi6_3.2.1-9 libffi8_3.4.2-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.3.0-11 libgcc-10-dev-s390x-cross_10.3.0-8cross1 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-8 libgcc-s1-s390x-cross_11.2.0-5cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-8 libgomp1-s390x-cross_11.2.0-5cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_11.2.0-8 libitm1-s390x-cross_11.2.0-5cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-8 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-8 libreadline8_8.1-2 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-4 libsmartcols1_2.37.2-3 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11 libstdc++-10-dev-s390x-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-8 libstdc++6-s390x-cross_11.2.0-5cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-4 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-8 libubsan1_11.2.0-8 libubsan1-s390x-cross_11.2.0-5cross1 libuchardet0_0.0.7-1 libudev1_247.9-4 libunistring2_0.9.10-6 libuuid1_2.37.2-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.9-2 linux-libc-dev-s390x-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-3 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021c-2 ucf_3.0043 util-linux_2.37.2-3 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64 Version: 1.0.0+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: http://snap.cs.berkeley.edu/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,kfreebsd-amd64,ppc64,riscv64,sparc64 Checksums-Sha1: 9d96d8672316ad4f1cab5c4dcfa5b7e281223ee7 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz 5e9beedd1506637a5e7be579e0597d4496f622db 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz Checksums-Sha256: 64e1eb4758b067c372e9ff41daabaefec5c8ebff4996fe595b9be67d916c4b3c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz 25b687c6ac61ea543c0c249c0d416ea70374f606b37e67ed04f084977f957c24 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz Files: 583e2df4d5b18c8a5c81bd00d83bb66c 1060724 snap-aligner_1.0.0+dfsg.orig.tar.xz b73bef484994a18da6b2f188eebf5734 8948 snap-aligner_1.0.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFW168RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEdqQ//cKhb9WcO4C6dVmJE9eiEgjMrsh9Y/MA5 j3xuLmDWe4c7XDmS4i6cGV2Lu7x06wjyJH9OQmUjRC9JwHnRr1wGIT/WfHbCGh0n Uq08E6kJAt6yfzsyRwZzhxdHzRXzM12GTUaL0B7kkeidgsqYxSRZHQP6ZQVtU+zm IfHekSDqZemvc/eKabAL8MxMl0+P3+DEgTJh7rxla3gGsU2BEZCcOjzI5tAEjMcU IonNX+bh5Gnzj6drCeRGr0rgX/XSLSHnOzWQI1NwOtyU/Suv6gcP7ZhlfhnreVpv QfHPJCcHxGNz60Oc2D6jFoCOFQO6NYE5jPsE+pZ6dogdDh0ys5WYlrYDnoxZju2+ FhF6NcUs+u0EqicgoUEtKbV8Yjaqi+c5iDWLuARxr3LorxsclBHAsYL491NlkIDM X6oYdOm3PONF5nrVvRWhy80QiJsWSLINt8o+v1IMe4wYWOTgnUKilCoU6M4OdOYL gNJpl/Vnyn5QQ46qSRfQSlvBRhnzLlL+HZhwqq455zeE004yo8MFHsIdzbOYqcev ZIYGL+2QAig1PRRQ7QJZZd50Vyd0Djp+35piHIS22YUgR5VK4q3Xgr7cpjeZ6TYZ Fner8qiOgQQPgqG9Fd6yqJMfak0BMxbY3AQ5AjX6OEXklXa/+DrtBQsa4r31u2u9 8S4UZqbPmZg= =9/CE -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ELMuT7Ci/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 1 09:41:03 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snap-aligner_1.0.0+dfsg-3.dsc dpkg-source: info: extracting snap-aligner in /<> dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_1.0.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_segfault.patch dpkg-source: info: applying non-x86-and-kfreebsd dpkg-source: info: applying drop-msse dpkg-source: info: applying spelling dpkg-source: info: applying simde Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-3a6437fa-e126-4bf6-86cd-570bede60ff2 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 1.0.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/<>' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[2]: Entering directory '/<>' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerContext.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/AlignerContext.cpp: In member function ‘void AlignerContext::printStats()’: SNAPLib/AlignerContext.cpp:486:75: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 9 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 492 | stats->lvCalls, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/AlignerContext.cpp:486:90: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 486 | fprintf(perfFile, "%d\t%d\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%0.2f%%\t%lld\t%0.2f%%\t%lld\tt%.0f\n", | ~~~^ | | | long long int | %ld ...... 494 | stats->totalReads, | ~~~~~~~~~~~~~~~~~ | | | _int64 {aka long int} s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BigAlloc.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/BufferedAsync.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Compat.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataReader.cpp:22: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:1751:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1751 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1755:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1755 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:1759:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 1759 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:1900:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1900:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1900 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:1904:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 1904 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/DataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:89:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 89 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTA.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GenericFile_stdio.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:164:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 164 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, (areALTContigsMarked ? GENOME_FLAG_ALT_CONTIGS_MARKED : 0)); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:174:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 174 | fprintf(saveFile, "%lld %x %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:176:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 176 | fprintf(saveFile, "%lld %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), contigs[i].name); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:267:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 267 | if (1 != sscanf(contigNameBuffer, "%lld", &contigStart)) { | ~~~^ ~~~~~~~~~~~~ | | | | | _int64* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool, bool*)’: SNAPLib/Genome.cpp:401:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 401 | if (NULL == retval || 2 != sscanf(linebuf,"%lld %d\n", nBases, nContigs)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld SNAPLib/Genome.cpp:410:31: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 410 | if (3 == sscanf(linebuf, "%lld %d %d\n", nBases, nContigs, &flags)) | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:419:21: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 419 | fprintf(stderr,"%llds\n", (timeInMillis() + 500 - start) / 1000); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/GenomeIndex.cpp:794:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:794:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 794 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:849:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:849:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 849 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 850 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1707:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1707:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1707 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1708 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Histogram.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedAligner.cpp:34: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ 668 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:668:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ SNAPLib/PairedAligner.cpp: In member function ‘virtual void PairedAlignerContext::runIterationThread()’: SNAPLib/PairedAligner.cpp:618:68: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 618 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/PairedReadMatcher.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadReader.cpp:19: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/ReadWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SAM.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1247:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 1247 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu\n", contigs[i].name, end - start); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int GenomeLocation {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1957:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1961 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1957:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1957 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1965 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2153:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2157 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2161 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2153:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2153 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2162 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2358:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2362 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2366 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2358:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2358 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s\n", | ~~~^ | | | long long int | %ld ...... 2367 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2690:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2780:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1183:17: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1183 | commandLine[0] = '\0'; | ~~~~~~~~~~~~~~~^~~~~~ SNAPLib/SAM.cpp:1182:40: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here 1182 | commandLine = new char[commandLineSize]; | ^ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2687:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2687:54: note: directive argument in the range [1, 9223372036854775807] 2687 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:866, from /usr/s390x-linux-gnu/include/c++/10/cstdio:42, from /usr/s390x-linux-gnu/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/s390x-linux-gnu/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2690:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2690:52: note: directive argument in the range [1, 9223372036854775807] 2690 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:866, from /usr/s390x-linux-gnu/include/c++/10/cstdio:42, from /usr/s390x-linux-gnu/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/s390x-linux-gnu/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2777:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2777:54: note: directive argument in the range [1, 9223372036854775807] 2777 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:866, from /usr/s390x-linux-gnu/include/c++/10/cstdio:42, from /usr/s390x-linux-gnu/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/s390x-linux-gnu/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp:2780:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2780:52: note: directive argument in the range [1, 9223372036854775807] 2780 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:866, from /usr/s390x-linux-gnu/include/c++/10/cstdio:42, from /usr/s390x-linux-gnu/include/c++/10/fstream:41, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: /usr/s390x-linux-gnu/include/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThread()’: SNAPLib/SingleAligner.cpp:181:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 181 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/SortedDataWriter.cpp:21: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:166:28: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 166 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:169:25: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 169 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/mapq.cpp:25: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp s390x-linux-gnu-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/AffineGapVectorized.h:3, from tests/AffineGapVectorizedTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from tests/ProbabilityDistanceTest.cpp:2: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp s390x-linux-gnu-g++ -o unit_tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:87: warning: "_MM_HINT_T0" redefined 87 | # define _MM_HINT_T0 1 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3294: note: this is the location of the previous definition 3294 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:88: warning: "_MM_HINT_T1" redefined 88 | # define _MM_HINT_T1 2 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3296: note: this is the location of the previous definition 3296 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:89: warning: "_MM_HINT_T2" redefined 89 | # define _MM_HINT_T2 3 | In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81, from apps/SNAPCommand/SNAPCommand.cpp:26: /usr/include/simde/x86/sse.h:3298: note: this is the location of the previous definition 3298 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o s390x-linux-gnu-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/<>' help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="1.0.0" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="1.0.0" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/snap-aligner/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_1.0.0+dfsg-3_s390x.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_1.0.0+dfsg-3_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snap-aligner_1.0.0+dfsg-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-10T00:03:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snap-aligner_1.0.0+dfsg-3_s390x.changes: ---------------------------------------- Format: 1.8 Date: Fri, 01 Oct 2021 11:29:05 +0200 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.0.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: snap-aligner - Scalable Nucleotide Alignment Program Changes: snap-aligner (1.0.0+dfsg-3) unstable; urgency=medium . * Team upload. * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 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Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: s390x Version: 1.0.0+dfsg-3 Checksums-Md5: dbb1308f888edbcac4676b03112c0087 2448064 snap-aligner-dbgsym_1.0.0+dfsg-3_s390x.deb 9b33fc4849a5f7c676e984268ebd6e8b 732192 snap-aligner_1.0.0+dfsg-3_s390x.deb Checksums-Sha1: b26385925a0f8fcd7df9facb4c6eaeb290c7f120 2448064 snap-aligner-dbgsym_1.0.0+dfsg-3_s390x.deb 54f2a67a3f1d2cac0bf71325c572f064f949061f 732192 snap-aligner_1.0.0+dfsg-3_s390x.deb Checksums-Sha256: 9d55f8dc6818a779a875165c74296b1664b0638d79c64c1ade3a8070eb13183b 2448064 snap-aligner-dbgsym_1.0.0+dfsg-3_s390x.deb 003e2e06c91c553f86ba9bbdf182559c66b94cc90b04188c7f89c5fca41d598a 732192 snap-aligner_1.0.0+dfsg-3_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 10 Oct 2021 00:03:05 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-3), bsdutils (= 1:2.37.2-3), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.3.0-11), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.3.0-11), gcc (= 4:10.2.1-1), gcc-10 (= 10.3.0-11), gcc-10-base (= 10.3.0-11), gcc-11-base (= 11.2.0-8), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), help2man (= 1.48.5), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-8), libatomic1 (= 11.2.0-8), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-3), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-8), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.3.0-11), libgcc-s1 (= 11.2.0-8), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libgmp10 (= 2:6.2.1+dfsg-2), libgomp1 (= 11.2.0-8), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.23-1), libitm1 (= 11.2.0-8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblocale-gettext-perl (= 1.07-4+b1), liblsan0 (= 11.2.0-8), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libquadmath0 (= 11.2.0-8), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsimde-dev (= 0.7.2-4), libsmartcols1 (= 2.37.2-3), libssl1.1 (= 1.1.1l-1), libstdc++-10-dev (= 10.3.0-11), libstdc++6 (= 11.2.0-8), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-4), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-8), libubsan1 (= 11.2.0-8), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-4), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-3), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.9-2), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-3), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1633080545" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_1.0.0+dfsg-3_s390x.deb ------------------------------------------ new Debian package, version 2.0. size 2448064 bytes: control archive=648 bytes. 442 bytes, 12 lines control 300 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 1.0.0+dfsg-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2633 Depends: snap-aligner (= 1.0.0+dfsg-3) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: 8359373f888a83b774e825431b35f50e36d12ac6 b74683f9203e5304b1b6a19e70d7ecb4f5e11b34 drwxr-xr-x root/root 0 2021-10-01 09:29 ./ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/83/ -rw-r--r-- root/root 1226784 2021-10-01 09:29 ./usr/lib/debug/.build-id/83/59373f888a83b774e825431b35f50e36d12ac6.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 1225072 2021-10-01 09:29 ./usr/lib/debug/.build-id/b7/4683f9203e5304b1b6a19e70d7ecb4f5e11b34.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 228416 2021-10-01 09:29 ./usr/lib/debug/.dwz/s390x-linux-gnu/snap-aligner.debug drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_1.0.0+dfsg-3_s390x.deb ----------------------------------- new Debian package, version 2.0. size 732192 bytes: control archive=1780 bytes. 963 bytes, 18 lines control 2591 bytes, 32 lines md5sums Package: snap-aligner Version: 1.0.0+dfsg-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1937 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: http://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2021-10-01 09:29 ./ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/bin/ -rwxr-xr-x root/root 739912 2021-10-01 09:29 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 735816 2021-10-01 09:29 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2021-10-01 09:29 ./usr/share/doc-base/snap-aligner.snap-aligner-manual -rw-r--r-- root/root 833 2021-10-01 09:29 ./usr/share/doc-base/snap-aligner.snap-aligner-quickstart drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2020-11-23 23:42 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78560 2020-11-23 23:42 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2021-10-01 09:29 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1630 2020-11-23 23:42 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2021-10-01 09:29 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 375912 2020-11-23 23:42 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 1508 2021-10-01 09:29 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2021-10-01 09:29 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2020-11-23 23:42 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 1220 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 27 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 1932 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 29 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 759 2021-10-01 09:29 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1059 2021-10-01 09:29 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-01 09:29 ./usr/share/man/man1/ -rw-r--r-- root/root 231 2021-10-01 09:29 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 282 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 283 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 283 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 269 2021-10-01 09:29 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [550 B] Get:5 copy:/<>/apt_archive ./ Packages [638 B] Fetched 2151 B in 0s (83.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7597 kB of archives. After this operation, 21.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.26-1 [129 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-2 [60.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.611-1 [45.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.108.0 [1337 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7597 kB in 0s (26.6 MB/s) Selecting previously unselected package diffstat. (Reading database ... 21371 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.108.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 55556 Build-Time: 93 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 34 Job: snap-aligner_1.0.0+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: snap-aligner Package-Time: 142 Source-Version: 1.0.0+dfsg-3 Space: 55556 Status: successful Version: 1.0.0+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-10-10T00:03:06Z Build needed 00:02:22, 55556k disk space