sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | snap-aligner 2.0.5+dfsg-1 (arm64) Sun, 08 Feb 2026 17:32:35 +0000 | +==============================================================================+ Package: snap-aligner Version: 2.0.5+dfsg-1 Source Version: 2.0.5+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-bbcb4835-d69f-4656-b48f-cb23434dd95e' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-NrBxBo/resolver-eIZ7yI' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [187 kB] Get:2 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/non-free Sources T-2026-02-08-1410.20-F-2026-02-08-1410.20.pdiff [251 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2026-02-08-1410.20-F-2026-02-08-0200.35.pdiff [53.6 kB] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2026-02-08-1410.20-F-2026-02-08-1410.20.pdiff [252 B] Get:6 http://localhost:3142/debian unstable/non-free Sources T-2026-02-08-1410.20-F-2026-02-08-1410.20.pdiff [251 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2026-02-08-1410.20-F-2026-02-08-0200.35.pdiff [71.0 kB] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2026-02-08-1410.20-F-2026-02-08-1410.20.pdiff [252 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2026-02-08-1410.20-F-2026-02-08-0200.35.pdiff [53.6 kB] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2026-02-08-1410.20-F-2026-02-08-0200.35.pdiff [71.0 kB] Get:10 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB] Fetched 10.6 MB in 3s (3796 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-15 cpp-15-x86-64-linux-gnu g++-15 g++-15-x86-64-linux-gnu gcc-15 gcc-15-base gcc-15-x86-64-linux-gnu libasan8 libatomic1 libc-bin libc-dev-bin libc-gconv-modules-extra libc6 libc6-dev libcc1-0 libgcc-15-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libquadmath0 libstdc++-15-dev libstdc++6 libtsan2 libubsan1 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 70.4 MB of archives. After this operation, 24.6 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.42-12 [61.4 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.42-12 [2016 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-12 [1123 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libc6 amd64 2.42-12 [1815 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 15.2.0-13 [42.7 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gcc-15-base amd64 15.2.0-13 [54.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-13 [71.5 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 15.2.0-13 [141 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 15.2.0-13 [26.5 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 15.2.0-13 [9492 B] Get:11 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 15.2.0-13 [2779 kB] Get:12 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 15.2.0-13 [1249 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 15.2.0-13 [2491 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 15.2.0-13 [1108 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 15.2.0-13 [1538 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 15.2.0-13 [145 kB] Get:17 http://localhost:3142/debian unstable/main amd64 gcc-15 amd64 15.2.0-13 [535 kB] Get:18 http://localhost:3142/debian unstable/main amd64 g++-15 amd64 15.2.0-13 [26.0 kB] Get:19 http://localhost:3142/debian unstable/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-13 [13.2 MB] Get:20 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-13 [2446 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-13 [2719 kB] Get:22 http://localhost:3142/debian unstable/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-13 [23.4 MB] Get:23 http://localhost:3142/debian unstable/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-13 [12.1 MB] Get:24 http://localhost:3142/debian unstable/main amd64 cpp-15 amd64 15.2.0-13 [1276 B] Get:25 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 15.2.0-13 [737 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.42-12 [643 kB] Preconfiguring packages ... 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NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2036 kB of source archives. Get:1 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-1 (dsc) [2145 B] Get:2 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-1 (tar) [2026 kB] Get:3 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-1 (diff) [8116 B] Fetched 2036 kB in 1s (1374 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snap-aligner-NrBxBo/snap-aligner-2.0.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/snap-aligner-NrBxBo' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [774 B] Get:5 copy:/<>/apt_archive ./ Packages [817 B] Fetched 2200 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: architecture-properties:arm64 autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libhwasan0:arm64 libhwasan0-arm64-cross libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1 libsimde-dev libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libstdc++-15-doc:arm64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties:arm64 autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc-gconv-modules-extra:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libhwasan0:arm64 libhwasan0-arm64-cross libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1 libsimde-dev libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 93.0 MB of archives. After this operation, 423 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-8 [15.2 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.3-3 [99.1 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://localhost:3142/debian unstable/main arm64 architecture-properties arm64 0.2.6+b1 [2636 B] Get:14 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:17 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:19 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.45.90.20260201-1 [1765 kB] Get:20 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu-base amd64 15.2.0-7cross1 [53.5 kB] Get:21 http://localhost:3142/debian unstable/main amd64 cpp-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [12.3 MB] Get:22 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:15.2.0-5 [5320 B] Get:23 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-7cross1 [48.9 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.42-10cross1 [1180 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 15.2.0-7cross1 [53.4 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 15.2.0-7cross1 [93.7 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 15.2.0-7cross1 [25.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 15.2.0-7cross1 [10.1 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 15.2.0-7cross1 [442 kB] Get:30 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 15.2.0-7cross1 [210 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 15.2.0-7cross1 [426 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 15.2.0-7cross1 [559 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 15.2.0-7cross1 [193 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 15.2.0-7cross1 [266 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-arm64-cross all 15.2.0-7cross1 [2537 kB] Get:36 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [23.7 MB] Get:37 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:15.2.0-5 [1444 B] Get:38 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.18.9-1 [11.8 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.42-10cross1 [1633 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-arm64-cross all 15.2.0-7cross1 [2699 kB] Get:41 http://localhost:3142/debian unstable/main amd64 g++-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [13.3 MB] Get:42 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:15.2.0-5 [1200 B] Get:43 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:44 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.29 [92.6 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:46 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21+nmu1 [11.7 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:49 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:50 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:54 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:55 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:56 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:57 http://localhost:3142/debian unstable/main amd64 debhelper all 13.29 [943 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.2-1 [29.9 kB] Get:59 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.2-1 [76.2 kB] Get:60 http://localhost:3142/debian unstable/main arm64 gcc-15-base arm64 15.2.0-13 [54.8 kB] Get:61 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:62 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-13 [53.5 kB] Get:63 http://localhost:3142/debian unstable/main arm64 libc-gconv-modules-extra arm64 2.42-12 [1154 kB] Get:64 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.42-12 [1409 kB] Get:65 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 15.2.0-13 [2601 kB] Get:66 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 15.2.0-13 [9892 B] Get:67 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.42-12 [1640 kB] Get:68 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 15.2.0-13 [126 kB] Get:69 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 15.2.0-13 [24.2 kB] Get:70 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 15.2.0-13 [1194 kB] Get:71 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 15.2.0-13 [2399 kB] Get:72 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 15.2.0-13 [647 kB] Get:73 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 15.2.0-13 [1064 kB] Get:74 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 15.2.0-13 [1479 kB] Get:75 http://localhost:3142/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-13 [2374 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get:77 http://localhost:3142/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-13 [2350 kB] Get:78 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-2 [85.9 kB] Get:79 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-2 [917 kB] Preconfiguring packages ... Fetched 93.0 MB in 0s (209 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12976 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-8_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5+b1_amd64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. 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Setting up libelf1t64:amd64 (0.194-1) ... Setting up fakeroot (1.37.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libc6-arm64-cross (2.42-10cross1) ... Setting up libunistring5:amd64 (1.3-2+b1) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-3.1) ... Setting up linux-libc-dev-arm64-cross (6.18.9-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up gcc-15-cross-base (15.2.0-7cross1) ... Setting up gcc-15-base:arm64 (15.2.0-13) ... Setting up liblocale-gettext-perl (1.07-8) ... Setting up libgcc-s1-arm64-cross (15.2.0-7cross1) ... Setting up libatomic1-arm64-cross (15.2.0-7cross1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblsan0-arm64-cross (15.2.0-7cross1) ... Setting up cpp-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up libgomp1-arm64-cross (15.2.0-7cross1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-9) ... Setting up libhwasan0-arm64-cross (15.2.0-7cross1) ... Setting up libc6-dev-arm64-cross (2.42-10cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (15.2.0-7cross1) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21+nmu1) ... Setting up cpp-aarch64-linux-gnu (4:15.2.0-5) ... Setting up libitm1-arm64-cross (15.2.0-7cross1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up libasan8-arm64-cross (15.2.0-7cross1) ... Setting up libtsan2-arm64-cross (15.2.0-7cross1) ... Setting up libubsan1-arm64-cross (15.2.0-7cross1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-15-dev-arm64-cross (15.2.0-7cross1) ... Setting up libstdc++-15-dev-arm64-cross (15.2.0-7cross1) ... Setting up gcc-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up debhelper (13.29) ... Setting up g++-15-aarch64-linux-gnu (15.2.0-7cross1) ... Setting up gcc-aarch64-linux-gnu (4:15.2.0-5) ... Setting up g++-aarch64-linux-gnu (4:15.2.0-5) ... Setting up crossbuild-essential-arm64 (12.12) ... Setting up libgcc-s1:arm64 (15.2.0-13) ... Setting up libc6:arm64 (2.42-12) ... Setting up libhwasan0:arm64 (15.2.0-13) ... Setting up libasan8:arm64 (15.2.0-13) ... Setting up libc6-dev:arm64 (2.42-12) ... Setting up libtsan2:arm64 (15.2.0-13) ... Setting up libstdc++6:arm64 (15.2.0-13) ... Setting up liblsan0:arm64 (15.2.0-13) ... Setting up libitm1:arm64 (15.2.0-13) ... Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.1-2) ... Setting up libgomp1:arm64 (15.2.0-13) ... Setting up libatomic1:arm64 (15.2.0-13) ... Setting up libubsan1:arm64 (15.2.0-13) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-2) ... Setting up libgcc-15-dev:arm64 (15.2.0-13) ... Setting up libstdc++-15-dev:arm64 (15.2.0-13) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.42-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45.90.20260201-1 dpkg-dev_1.23.5 g++-15_15.2.0-13 gcc-15_15.2.0-13 libc6-dev_2.42-12 libstdc++-15-dev_15.2.0-13 libstdc++-15-dev-arm64-cross_15.2.0-7cross1 libstdc++6_15.2.0-13 libstdc++6-arm64-cross_15.2.0-7cross1 linux-libc-dev_6.18.9-1 Package versions: apt_3.1.15 apt-utils_3.1.15 architecture-properties_0.2.6+b1 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 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man-db_2.13.1-1 mawk_1.3.4.20260129-1 mount_2.41.3-3 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 openssl-provider-legacy_3.5.5-1 passwd_1:4.19.2-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6 tar_1.35+dfsg-3.1 tzdata_2025c-3 util-linux_2.41.3-3 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-2 zlib1g-dev_1:1.3.dfsg+really1.3.1-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: any Version: 2.0.5+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: https://snap.cs.berkeley.edu/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=any Checksums-Sha1: 9ebb19c38e7627f2b72ee26f388ed2f56badc639 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 4f2f7734a0d2447d19243365b074d9e864743ca9 8116 snap-aligner_2.0.5+dfsg-1.debian.tar.xz Checksums-Sha256: 79e0f15a019bae7b8cb549778beb11ab267966a6e220d0fa7f01b83d6885627f 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 699b1a1d870f98ea8fcea9218e4ceca5f308b0f36e77fdd2c9974efb9a38a6bf 8116 snap-aligner_2.0.5+dfsg-1.debian.tar.xz Files: 748a7f66cb99b6d2c3a7337d3324ed51 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 69131ba3ef1ec8a84e3512552d8f7979 8116 snap-aligner_2.0.5+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmi627sSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biPFgP/3DVsOo34ewYJvFHt2Qu4l0hiUBltwTU yM6ol5DXy9BkYibfYNQK21QQ2Oz/VJo9HeBgVHoZbc5IbZW6S59dKfJHaJ1+cFU0 jNqdmleP1RfSlkIp1yQtGjrotzKZyz5OiDS3Tf529F0s6ZDAT2xUMbThE+HfMRI+ pTu5Nu2Dr91f5T90BcmY4ayx1eR8KFlanzJ1zhduXNYMKRXJlRbVaTEfIiCdhWYR jk0XLLKnwF6n+caT7pMTsj1vFNLTIhtDJBLzZ+bvC0Pq/RsXrRfXf2e3C7dO/1zt cankVDpy0igfnf93PD9n2m9iJBpF676pHf1B7ucr2tRx1anO0NcXFxr7vsas3AGW kqce5IRtsJdFgGOIAN9wjbQ0W/dHVKQd5ZmDOfr0dD5tthj0UUGLJctBympkfA78 AjRysDX/OYx/+qGkCbg4jhyiUSj19oYLLqKRjKWApjrKrisutZGqLq4LsnHYC6bm I5/mSBChktsIm53N468N6ZyCAXwHF1yrC+AmGotjR82aCKvLps4BLqnrA3r/XquV 35DsZSBRJkWuFdb1dZ6wjsvPvhCrCN23IONsmrWfCYzQk7qMWe5V7gpiiaLZeWag tfPVKwf8NGT/q0rY1z3omk2ngo22N1cDkU8oXh3RSAseBzr6Ak8wZZ1ns45nv5jL lhuRG0sGssk6 =yiSY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./snap-aligner_2.0.5+dfsg-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./snap-aligner_2.0.5+dfsg-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting snap-aligner in /<> dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying non-x86-and-kfreebsd dpkg-source: info: applying drop-msse dpkg-source: info: applying simde dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.c7NzoYIAZd/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-bbcb4835-d69f-4656-b48f-cb23434dd95e SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 2.0.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/<>' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[2]: Entering directory '/<>' aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/DataReader.cpp: In static member function ‘static bool DecompressDataReader::decompress(z_stream*, ThreadHeap*, char*, _int64, _int64*, char*, _int64, _int64*, DecompressMode)’: SNAPLib/DataReader.cpp:2052:53: warning: format ‘%llx’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2052 | fprintf(stderr, "\n0x%llx\t", offset); | ~~~^ ~~~~~~ | | | | | _int64 {aka long int} | long long unsigned int | %lx SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:2105:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2105 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2109:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2109 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2113:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2113 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:2261:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2261:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2265:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2265 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:96:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 96 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:216:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 216 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, GENOME_FLAG_ALT_CONTIGS_MARKED); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:226:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:226:42: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:356:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp:356:58: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool)’: SNAPLib/Genome.cpp:497:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 497 | if (NULL == retval || 3 != sscanf(linebuf,"%lld %d %d\n", nBases, nContigs, &flags)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:952:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:1007:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:1007:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1879:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1879:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1880 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HitDepth.o SNAPLib/HitDepth.cpp In file included from SNAPLib/HitDepth.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/PairedAligner.cpp: In member function ‘void PairedAlignerContext::runIterationThreadImpl(Read**)’: SNAPLib/PairedAligner.cpp:673:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 673 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1292:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘long int’ [-Wformat=] 1292 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu%s\n", contig->name, contig->length - context.genome->getChromosomePadding(), contig->isALT ? "\tAH:*":""); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long int | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, bool, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1854:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1858 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1854:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1862 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2076:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2080 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2084 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2085 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2312:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2316 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2320 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2321 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2654:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2749:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static void SAMFormat::printRead(const Genome*, Read*, GenomeLocation)’: SNAPLib/SAM.cpp:2820:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 2820 | printf("Aligned location %s:%llu\n", | ~~~^ | | | long long unsigned int | %lu 2821 | genome->getContigAtLocation(location)->name, 2822 | location - genome->getContigAtLocation(location)->beginningLocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeLocation {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2650:54: note: directive argument in the range [1, 9223372036854775807] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:970, from /usr/aarch64-linux-gnu/include/c++/15/cstdio:47, from /usr/aarch64-linux-gnu/include/c++/15/fstream:45, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2650:21: /usr/aarch64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2654:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2654:52: note: directive argument in the range [1, 9223372036854775807] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2654:21: /usr/aarch64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2745:54: note: directive argument in the range [1, 9223372036854775807] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2745:21: /usr/aarch64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2749:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2749:52: note: directive argument in the range [1, 9223372036854775807] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2749:21: /usr/aarch64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThreadImpl(Read*&)’: SNAPLib/SingleAligner.cpp:207:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 207 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:167:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 167 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:170:46: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 170 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp aarch64-linux-gnu-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp In file included from SNAPLib/AffineGapVectorized.h:7, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp aarch64-linux-gnu-g++ -o unit_tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3486:11: note: this is the location of the previous definition 3486 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3488:11: note: this is the location of the previous definition 3488 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3490:11: note: this is the location of the previous definition 3490 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o aarch64-linux-gnu-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/<>' help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="2.0.5" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/snap-aligner/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_2.0.5+dfsg-1_arm64.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../snap-aligner_2.0.5+dfsg-1_arm64.buildinfo dpkg-genchanges --build=any -O../snap-aligner_2.0.5+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-02-08T17:34:31Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snap-aligner_2.0.5+dfsg-1_arm64.changes: ---------------------------------------- Format: 1.8 Date: Fri, 05 Sep 2025 13:52:21 +0200 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.0.5+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: snap-aligner - Scalable Nucleotide Alignment Program Changes: snap-aligner (2.0.5+dfsg-1) unstable; urgency=medium . * d/control: simplify architecture specification via the provisions from the architecture-properties package. * New upstream version * Standards-Version: 4.7.2 (routine-update) * Refreshed patches. * Added patch to fix typo. Checksums-Sha1: 85c467106f770a9779ea1d4a78f9ee1235862405 2864076 snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb 730a80c6657d5893ae1d1c8ec016b58a8cb30f74 5153 snap-aligner_2.0.5+dfsg-1_arm64.buildinfo 360359cb458cc49105cb81c2bc727c9e0065b160 808924 snap-aligner_2.0.5+dfsg-1_arm64.deb Checksums-Sha256: 21fa9fa21e7ad7929ab0c9d2dd2e47ab521ee379d59ab1dd49a85e55cec8056e 2864076 snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb 78b836b5f254913bae8b50baffb39ed9299443f8ddab217dabaf2b554a017139 5153 snap-aligner_2.0.5+dfsg-1_arm64.buildinfo 122f14125f4c98f0fc32f485217a963cd0dc1c24750dab02582ad40d76c94c33 808924 snap-aligner_2.0.5+dfsg-1_arm64.deb Files: ae07da64243b59cbdb8a197fe66bc3c5 2864076 debug optional snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb 0019c548bf9df838d902c11a2d9a58a2 5153 science optional snap-aligner_2.0.5+dfsg-1_arm64.buildinfo a3e42ee4c7f6783c08ca720edb4da77e 808924 science optional snap-aligner_2.0.5+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: arm64 Version: 2.0.5+dfsg-1 Checksums-Md5: ae07da64243b59cbdb8a197fe66bc3c5 2864076 snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb a3e42ee4c7f6783c08ca720edb4da77e 808924 snap-aligner_2.0.5+dfsg-1_arm64.deb Checksums-Sha1: 85c467106f770a9779ea1d4a78f9ee1235862405 2864076 snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb 360359cb458cc49105cb81c2bc727c9e0065b160 808924 snap-aligner_2.0.5+dfsg-1_arm64.deb Checksums-Sha256: 21fa9fa21e7ad7929ab0c9d2dd2e47ab521ee379d59ab1dd49a85e55cec8056e 2864076 snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb 122f14125f4c98f0fc32f485217a963cd0dc1c24750dab02582ad40d76c94c33 808924 snap-aligner_2.0.5+dfsg-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 08 Feb 2026 17:34:31 +0000 Build-Path: /<> Installed-Build-Depends: architecture-properties (= 0.2.6+b1), autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45.90.20260201-1), binutils-common (= 2.45.90.20260201-1), binutils-x86-64-linux-gnu (= 2.45.90.20260201-1), bsdextrautils (= 2.41.3-3), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.7-3), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-13), cpp-15-x86-64-linux-gnu (= 15.2.0-13), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.29), debianutils (= 5.23.2), dh-autoreconf (= 21+nmu1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-13), g++-15-x86-64-linux-gnu (= 15.2.0-13), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-13), gcc-15-base (= 15.2.0-13), gcc-15-x86-64-linux-gnu (= 15.2.0-13), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b2), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-13), libatomic1 (= 15.2.0-13), libattr1 (= 1:2.5.2-3+b1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.45.90.20260201-1), libblkid1 (= 2.41.3-3), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-12), libc-dev-bin (= 2.42-12), libc-gconv-modules-extra (= 2.42-12), libc6 (= 2.42-12), libc6-dev (= 2.42-12), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-13), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.90.20260201-1), libctf0 (= 2.45.90.20260201-1), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.29), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-13), libgcc-s1 (= 15.2.0-13), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 15.2.0-13), libgprofng0 (= 2.45.90.20260201-1), libhwasan0 (= 15.2.0-13), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-13), libjansson4 (= 2.14-2+b4), liblocale-gettext-perl (= 1.07-8), liblsan0 (= 15.2.0-13), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-3), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libquadmath0 (= 15.2.0-13), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.45.90.20260201-1), libsimde-dev (= 0.8.2-3), libsmartcols1 (= 2.41.3-3), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-13), libstdc++6 (= 15.2.0-13), libsystemd0 (= 259.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-13), libubsan1 (= 15.2.0-13), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259.1-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-3), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.9-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.3-3), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-2), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1757073141" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_2.0.5+dfsg-1_arm64.deb ------------------------------------------ new Debian package, version 2.0. size 2864076 bytes: control archive=656 bytes. 442 bytes, 12 lines control 302 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 2.0.5+dfsg-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 4543 Depends: snap-aligner (= 2.0.5+dfsg-1) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: 807e0743676f2994ee24f95d8a19847916d5d1c8 defd5b339741dc6508859cd991b6acb4a2f0a515 drwxr-xr-x root/root 0 2025-09-05 11:52 ./ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/.build-id/80/ -rw-r--r-- root/root 2178408 2025-09-05 11:52 ./usr/lib/debug/.build-id/80/7e0743676f2994ee24f95d8a19847916d5d1c8.debug drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/.build-id/de/ -rw-r--r-- root/root 2175632 2025-09-05 11:52 ./usr/lib/debug/.build-id/de/fd5b339741dc6508859cd991b6acb4a2f0a515.debug drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 282968 2025-09-05 11:52 ./usr/lib/debug/.dwz/aarch64-linux-gnu/snap-aligner.debug drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-09-05 11:52 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_2.0.5+dfsg-1_arm64.deb ----------------------------------- new Debian package, version 2.0. size 808924 bytes: control archive=1784 bytes. 965 bytes, 18 lines control 2591 bytes, 32 lines md5sums Package: snap-aligner Version: 2.0.5+dfsg-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2066 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: https://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2025-09-05 11:52 ./ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/bin/ -rwxr-xr-x root/root 789112 2025-09-05 11:52 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 789112 2025-09-05 11:52 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2025-09-05 11:50 ./usr/share/doc-base/snap-aligner.snap-aligner-manual -rw-r--r-- root/root 833 2025-09-05 11:50 ./usr/share/doc-base/snap-aligner.snap-aligner-quickstart drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2025-05-06 20:19 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78557 2025-05-06 20:19 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2025-09-05 11:50 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1187 2025-05-06 20:19 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2025-09-05 11:50 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 398044 2025-05-06 20:19 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 1225 2025-09-05 11:52 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2025-09-05 11:52 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 4235 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 30 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 6461 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 30 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 751 2025-09-05 11:50 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1066 2025-09-05 11:50 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/man/ drwxr-xr-x root/root 0 2025-09-05 11:52 ./usr/share/man/man1/ -rw-r--r-- root/root 237 2025-09-05 11:52 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 256 2025-09-05 11:52 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 257 2025-09-05 11:52 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 257 2025-09-05 11:52 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 244 2025-09-05 11:52 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1356 B] Get:5 copy:/<>/apt_archive ./ Packages [1435 B] Fetched 3406 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:arm64 shared-mime-info t1utils ucf unzip 0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded. Need to get 24.4 MB of archives. After this operation, 92.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.5-1 [1500 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 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http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.58-2 [89.7 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b1 [62.1 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3+b1 [871 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3+b1 [181 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-5 [129 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b2 [136 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b1 [23.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-5 [639 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b3 [10.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2+b1 [15.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b5 [22.5 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.85-1 [24.0 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:102 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:103 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b2 [31.1 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:112 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:119 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:120 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [342 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.098-1 [229 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:123 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:131 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:132 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16~rc1-2 [39.8 kB] Get:135 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b1 [36.5 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:138 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:143 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.1-1 [143 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4 [11.0 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b1 [12.5 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b1 [42.3 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:156 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:160 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b2 [174 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1 [78.2 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.63-1 [20.4 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB] Get:172 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13~rc1-2 [66.7 kB] Get:173 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:174 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB] Get:175 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:176 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:177 http://localhost:3142/debian unstable/main amd64 lintian all 2.129.0 [1068 kB] Preconfiguring packages ... Fetched 24.4 MB in 0s (135 MB/s) Selecting previously unselected package netbase. (Reading database ... 19515 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20251231-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20251231-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9+b1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9+b1_amd64.deb ... Unpacking procps (2:4.0.4-9+b1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.5.5-1_amd64.deb ... Unpacking openssl (3.5.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../010-libffi8_3.5.2-3+b1_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-3+b1) ... Selecting previously unselected package libglib2.0-0t64:amd64. 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Unpacking libssh2-1t64:amd64 (1.11.1-1+b1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../034-libcurl3t64-gnutls_8.18.0-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.18.0-2) ... Selecting previously unselected package libfyaml0:amd64. Preparing to unpack .../035-libfyaml0_0.9.3-1_amd64.deb ... Unpacking libfyaml0:amd64 (0.9.3-1) ... Selecting previously unselected package libstemmer0d:amd64. Preparing to unpack .../036-libstemmer0d_3.0.1-1+b1_amd64.deb ... Unpacking libstemmer0d:amd64 (3.0.1-1+b1) ... Selecting previously unselected package libxmlb2:amd64. Preparing to unpack .../037-libxmlb2_0.3.24-2_amd64.deb ... Unpacking libxmlb2:amd64 (0.3.24-2) ... Selecting previously unselected package libappstream5:amd64. Preparing to unpack .../038-libappstream5_1.1.2-1_amd64.deb ... Unpacking libappstream5:amd64 (1.1.2-1) ... Selecting previously unselected package appstream. Preparing to unpack .../039-appstream_1.1.2-1_amd64.deb ... Unpacking appstream (1.1.2-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../040-diffstat_1.68-1_amd64.deb ... Unpacking diffstat (1.68-1) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../041-libgpg-error0_1.58-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.58-2) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../042-libassuan9_3.0.2-2+b1_amd64.deb ... Unpacking libassuan9:amd64 (3.0.2-2+b1) ... Selecting previously unselected package libgcrypt20:amd64. Preparing to unpack .../043-libgcrypt20_1.11.2-3+b1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.2-3+b1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../044-libreadline8t64_8.3-3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3+b1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.8-5_amd64.deb ... Unpacking gpgconf (2.4.8-5) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../046-libksba8_1.6.7-2+b2_amd64.deb ... Unpacking libksba8:amd64 (1.6.7-2+b2) ... Selecting previously unselected package libnpth0t64:amd64. 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Setting up libberkeleydb-perl:amd64 (0.66-2) ... Setting up plzip (1.13~rc1-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b5) ... Setting up libnpth0t64:amd64 (1.8-3+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b1) ... Setting up libunicode-utf8-perl (0.63-1) ... Setting up libmouse-perl:amd64 (2.6.1-1) ... Setting up libgpg-error0:amd64 (1.58-2) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4) ... Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.85-1) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libsqlite3-0:amd64 (3.46.1-9) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.68.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.2-3+b1) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... 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Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.87.2-3) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.25.10-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0052) ... Setting up libreadline8t64:amd64 (8.3-3+b1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up gpgconf (2.4.8-5) ... Setting up libio-socket-ssl-perl (2.098-1) ... Setting up gpg (2.4.8-5) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:amd64 (3.8.11-3) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.24-2) ... Setting up libparams-classify-perl:amd64 (0.015-2+b5) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:amd64 (8.18.0-2) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.1.2-1) ... Setting up appstream (1.1.2-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.81-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.20-1) ... Setting up lintian (2.129.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.42-12) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 92 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 9 Job: snap-aligner_2.0.5+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: snap-aligner Package-Time: 116 Source-Version: 2.0.5+dfsg-1 Space: n/a Status: successful Version: 2.0.5+dfsg-1 -------------------------------------------------------------------------------- Finished at 2026-02-08T17:34:31Z Build needed 00:01:56, no disk space