sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on mjolnir.einval.org +==============================================================================+ | snap-aligner 2.0.5+dfsg-2 (amd64) Sun, 18 Oct 2026 08:48:18 +0000 | +==============================================================================+ Package: snap-aligner Version: 2.0.5+dfsg-2 Source Version: 2.0.5+dfsg-2 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.R0tLGdla6a... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 18 Oct 2026 08:48:38 +0000 | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [193 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [12.1 MB] Get:3 http://mirror.einval.org/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [10.7 MB] Fetched 33.7 MB in 8s (4201 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 18 Oct 2026 08:48:56 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2037 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main snap-aligner 2.0.5+dfsg-2 (dsc) [1775 B] Get:2 http://mirror.einval.org/debian unstable/main snap-aligner 2.0.5+dfsg-2 (tar) [2026 kB] Get:3 http://mirror.einval.org/debian unstable/main snap-aligner 2.0.5+dfsg-2 (diff) [8756 B] Fetched 2037 kB in 0s (24.9 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 18 Oct 2026 08:48:58 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-UbiACw/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Sources [775 B] Get:5 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Packages [818 B] Fetched 2202 B in 0s (87.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: architecture-properties:amd64 autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-16-base:amd64 gcc-16-cross-base gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:amd64 libgcc-16-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsimde-dev libstdc++-16-dev:amd64 libstdc++-16-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 manpages-dev:amd64 libstdc++-16-doc:amd64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:amd64 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties:amd64 autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-16-base:amd64 gcc-16-cross-base gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:amd64 libgcc-16-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsimde-dev libstdc++-16-dev:amd64 libstdc++-16-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After this operation, 445 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-10+b1 [14.9 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.47-4 [345 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.47-4 [104 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.47-4 [43.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 1.0-5 [328 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2+b2 [69.1 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.24.2-2 [1279 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.42.4-1 [99.1 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-3 [47.2 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Get:13 http://mirror.einval.org/debian unstable/main amd64 architecture-properties amd64 0.2.6+b2 [2632 B] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.73-2 [516 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.19-2 [891 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 1.0-5 [820 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-16-x86-64-linux-gnu-base arm64 16.2.0-3cross1 [38.9 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-16-x86-64-linux-gnu arm64 16.2.0-3cross1 [11.7 MB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:16.1.0-3 [4472 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.47-6 [1530 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 16.2.0-3cross1 [74.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 16.2.0-3cross1 [146 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 16.2.0-3cross1 [27.0 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 16.2.0-3cross1 [10.5 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 16.2.0-3cross1 [2878 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 16.2.0-3cross1 [1279 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 16.2.0-3cross1 [2562 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.43-3cross8 [1630 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 16.2.0-3cross1 [799 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 16.2.0-3cross1 [1135 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 16.2.0-3cross1 [1576 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 16.2.0-3cross1 [147 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libgcc-16-dev-amd64-cross all 16.2.0-3cross1 [2765 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-16-x86-64-linux-gnu arm64 16.2.0-3cross1 [22.7 MB] Get:38 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:16.1.0-3 [1448 B] Get:39 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 7.2.11-1 [12.4 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.43-3cross8 [2063 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libstdc++-16-dev-amd64-cross all 16.2.0-3cross1 [2737 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 g++-16-x86-64-linux-gnu arm64 16.2.0-3cross1 [12.8 MB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:16.1.0-3 [1196 B] Get:44 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 14.5 [77.7 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.6.2-3 [552 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 23 [12.7 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:51 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.196-1 [57.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.17-1 [100 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.4.2-1 [455 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.15.4+dfsg-1 [602 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 1.0-5 [2549 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 debhelper all 14.5 [944 kB] Get:59 http://mirror.einval.org/debian unstable/main amd64 gcc-16-base amd64 16.2.0-3 [38.7 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b2 [198 kB] Get:61 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 16.2.0-3 [74.0 kB] Get:62 http://mirror.einval.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:63 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:64 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:65 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:66 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:67 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:68 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:69 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:70 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:71 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 16.2.0-3 [823 kB] Get:72 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:73 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:74 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:75 http://mirror.einval.org/debian unstable/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Preconfiguring packages ... Fetched 104 MB in 1s (87.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-10+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-10+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.47-4_arm64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.47-4_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.47-4_arm64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. 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Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libasan8-amd64-cross (16.2.0-3cross1) ... Setting up liblsan0-amd64-cross (16.2.0-3cross1) ... Setting up libc6-dev-amd64-cross (2.43-3cross8) ... Setting up libtsan2-amd64-cross (16.2.0-3cross1) ... Setting up libgomp1-amd64-cross (16.2.0-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b2) ... Setting up dh-autoreconf (23) ... Setting up libhwasan0-amd64-cross (16.2.0-3cross1) ... Setting up libubsan1-amd64-cross (16.2.0-3cross1) ... Setting up libgcc-16-dev-amd64-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up libstdc++-16-dev-amd64-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-3cross1) ... Setting up man-db (2.13.1-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up g++-16-x86-64-linux-gnu (16.2.0-3cross1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up debhelper (14.5) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libgcc-s1:amd64 (16.2.0-3) ... Setting up libc6:amd64 (2.43-7) ... Setting up libhwasan0:amd64 (16.2.0-3) ... Setting up libasan8:amd64 (16.2.0-3) ... Setting up libc6-dev:amd64 (2.43-7) ... Setting up libtsan2:amd64 (16.2.0-3) ... Setting up libstdc++6:amd64 (16.2.0-3) ... Setting up liblsan0:amd64 (16.2.0-3) ... Setting up libitm1:amd64 (16.2.0-3) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libquadmath0:amd64 (16.2.0-3) ... Setting up libatomic1:amd64 (16.2.0-3) ... Setting up libubsan1:amd64 (16.2.0-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libgcc-16-dev:amd64 (16.2.0-3) ... Setting up libstdc++-16-dev:amd64 (16.2.0-3) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (14.2) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 18 Oct 2026 08:49:57 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 18 Oct 2026 08:49:58 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.111+deb13-arm64 #1 SMP Debian 6.12.111-1 (2026-09-28) arm64 (aarch64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-amd64-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-amd64-cross_16.2.0-3cross1 linux-libc-dev_7.2.11-1 Package versions: apt_3.3.3 apt-utils_3.3.3 architecture-properties_0.2.6+b2 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8+b1 bash_5.3-4 binutils_2.47-6 binutils-aarch64-linux-gnu_2.47-6 binutils-common_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-aarch64-linux-gnu_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3cross1 cpp-aarch64-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-amd64_12.12 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1+b1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-aarch64-linux-gnu_16.2.0-3 g++-16-x86-64-linux-gnu_16.2.0-3cross1 g++-aarch64-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-aarch64-linux-gnu_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-cross-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-3cross1 gcc-16-x86-64-linux-gnu-base_16.2.0-3cross1 gcc-aarch64-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1+b1 groff-base_1.24.2-2 gzip_1.14-1 help2man_1.49.3+b2 hostname_3.25+b1 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libasan8-amd64-cross_16.2.0-3cross1 libatomic1_16.2.0-3 libatomic1-amd64-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-amd64-cross_2.43-3cross8 libc6-dev_2.43-7 libc6-dev-amd64-cross_2.43-3cross8 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 libgcc-16-dev-amd64-cross_16.2.0-3cross1 libgcc-s1_16.2.0-3 libgcc-s1-amd64-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-3 libgomp1-amd64-cross_16.2.0-3cross1 libgprofng0_2.47-6 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-3 libhwasan0-amd64-cross_16.2.0-3cross1 libisl23_0.28-1 libitm1_16.2.0-3 libitm1-amd64-cross_16.2.0-3cross1 libjansson4_2.15.1-1 liblocale-gettext-perl_1.07-10+b1 liblsan0_16.2.0-3 liblsan0-amd64-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libquadmath0_16.2.0-3 libquadmath0-amd64-cross_16.2.0-3cross1 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47-6 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42.4-1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-amd64-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-amd64-cross_16.2.0-3cross1 libsystemd0_262.1-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-3 libtsan2-amd64-cross_16.2.0-3cross1 libubsan1_16.2.0-3 libubsan1-amd64-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262.1-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.11-1 linux-libc-dev-amd64-cross_7.2.11-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.5-1 patch_2.8-2+b1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 18 Oct 2026 08:49:58 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: any Version: 2.0.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: https://snap.cs.berkeley.edu/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=any Checksums-Sha1: 9ebb19c38e7627f2b72ee26f388ed2f56badc639 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 0951c07ddadbc95f19d2d6f2df117d8d85e60079 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz Checksums-Sha256: 79e0f15a019bae7b8cb549778beb11ab267966a6e220d0fa7f01b83d6885627f 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 92585a9b1157c0f0dc6b35d0dbc7e9e492d823964301d8e1ef0fcf7725041f73 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz Files: 748a7f66cb99b6d2c3a7337d3324ed51 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz a77465d78eb9a839256a8157b9c294bc 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz -----BEGIN PGP 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info: extracting snap-aligner in /build/reproducible-path/snap-aligner-2.0.5+dfsg dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying non-x86-and-kfreebsd.patch dpkg-source: info: applying drop-msse.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying detach-threads.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 2.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_auto_clean make -j1 clean make[2]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_auto_build make -j1 INSTALL="install --strip-program=true" CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[2]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp SNAPLib/DataReader.cpp: In static member function ‘static bool DecompressDataReader::decompress(z_stream*, ThreadHeap*, char*, _int64, _int64*, char*, _int64, _int64*, DecompressMode)’: SNAPLib/DataReader.cpp:2052:53: warning: format ‘%llx’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2052 | fprintf(stderr, "\n0x%llx\t", offset); | ~~~^ ~~~~~~ | | | | | _int64 {aka long int} | long long unsigned int | %lx SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:2105:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2105 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2109:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2109 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2113:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2113 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:2261:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2261:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2265:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2265 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:96:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 96 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:216:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 216 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, GENOME_FLAG_ALT_CONTIGS_MARKED); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:226:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:226:42: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:356:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp:356:58: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool)’: SNAPLib/Genome.cpp:497:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 497 | if (NULL == retval || 3 != sscanf(linebuf,"%lld %d %d\n", nBases, nContigs, &flags)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:952:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:1007:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:1007:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1879:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1879:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1880 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HitDepth.o SNAPLib/HitDepth.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/PairedAligner.cpp: In member function ‘void PairedAlignerContext::runIterationThreadImpl(Read**)’: SNAPLib/PairedAligner.cpp:673:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 673 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1292:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘long int’ [-Wformat=] 1292 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu%s\n", contig->name, contig->length - context.genome->getChromosomePadding(), contig->isALT ? "\tAH:*":""); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long int | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, bool, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1854:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1858 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1854:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1862 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2076:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2080 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2084 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2085 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2312:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2316 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2320 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2321 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2654:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2749:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static void SAMFormat::printRead(const Genome*, Read*, GenomeLocation)’: SNAPLib/SAM.cpp:2820:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 2820 | printf("Aligned location %s:%llu\n", | ~~~^ | | | long long unsigned int | %lu 2821 | genome->getContigAtLocation(location)->name, 2822 | location - genome->getContigAtLocation(location)->beginningLocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeLocation {aka long int} SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2650:54: note: directive argument in the range [1, 9223372036854775807] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:974, from /usr/x86_64-linux-gnu/include/c++/16/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/16/fstream:45, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2650:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2654:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2654:52: note: directive argument in the range [1, 9223372036854775807] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2654:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2745:54: note: directive argument in the range [1, 9223372036854775807] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2745:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2749:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2749:52: note: directive argument in the range [1, 9223372036854775807] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2749:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2650:54: note: directive argument in the range [1, 9223372036854775807] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2650:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2654:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2654:52: note: directive argument in the range [1, 9223372036854775807] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2654:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2745:54: note: directive argument in the range [1, 9223372036854775807] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2745:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2749:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2749:52: note: directive argument in the range [1, 9223372036854775807] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2749:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThreadImpl(Read*&)’: SNAPLib/SingleAligner.cpp:207:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 207 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:167:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 167 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:170:46: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 170 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp x86_64-linux-gnu-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp x86_64-linux-gnu-g++ -o unit_tests -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o x86_64-linux-gnu-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="2.0.5" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/snap-aligner/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_2.0.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_2.0.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=any -O../snap-aligner_2.0.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=any -O../snap-aligner_2.0.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-18T08:55:26Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Sun, 18 Oct 2026 08:55:26 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/snap-aligner-2.0.5+dfsg/ -------------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/snap-aligner-2.0.5+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 18 Oct 2026 08:55:27 +0000 | +------------------------------------------------------------------------------+ snap-aligner_2.0.5+dfsg-2_amd64.changes: ---------------------------------------- Format: 1.8 Date: Sun, 04 Oct 2026 21:25:00 +0200 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.0.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: snap-aligner - Scalable Nucleotide Alignment Program Closes: 848589 Changes: snap-aligner (2.0.5+dfsg-2) unstable; urgency=medium . * Team upload. * Detach threads created in StartNewThread to stop leaking thread stacks. Closes: #848589. * Drop "Rules-Requires-Root: no" (default). * Drop "Priority: optional" (default). * Update standards-version. * Fine-tune salsa-ci.yml. 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+------------------------------------------------------------------------------+ | Buildinfo Sun, 18 Oct 2026 08:55:29 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: amd64 Version: 2.0.5+dfsg-2 Checksums-Md5: dba496a1c7cae1670824d27068ca6f83 2963516 snap-aligner-dbgsym_2.0.5+dfsg-2_amd64.deb e5a1b8fe68fe4613c3dfdc249ce7ad8d 836688 snap-aligner_2.0.5+dfsg-2_amd64.deb Checksums-Sha1: 71cced611823b6a2170333351188b109df37f482 2963516 snap-aligner-dbgsym_2.0.5+dfsg-2_amd64.deb d54b77ec2e4c3befecb941b14509907b3c2d4645 836688 snap-aligner_2.0.5+dfsg-2_amd64.deb Checksums-Sha256: 1d624b7af951745bea525ebe503838743a4a916b699157abe6ce87ee0dd61d8d 2963516 snap-aligner-dbgsym_2.0.5+dfsg-2_amd64.deb 2468b3ef39e866fb5842db1fddc7bb1dc8ae4c59893b46484a15357e4ab22762 836688 snap-aligner_2.0.5+dfsg-2_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sun, 18 Oct 2026 08:55:25 +0000 Build-Path: /build/reproducible-path/snap-aligner-2.0.5+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6+b2), autoconf (= 2.73-2), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8+b1), bash (= 5.3-4), binutils (= 2.47-6), binutils-aarch64-linux-gnu (= 2.47-6), binutils-common (= 2.47-6), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-aarch64-linux-gnu (= 16.2.0-3), cpp-aarch64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-aarch64-linux-gnu (= 16.2.0-3), g++-aarch64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-aarch64-linux-gnu (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-aarch64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1+b1), groff-base (= 1.24.2-2), gzip (= 1.14-1), help2man (= 1.49.3+b2), hostname (= 3.25+b1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47-6), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libhwasan0 (= 16.2.0-3), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), liblocale-gettext-perl (= 1.07-10+b1), liblsan0 (= 16.2.0-3), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.2.0-3), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42.4-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262.1-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.11-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2+b1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1791141900" +------------------------------------------------------------------------------+ | Package contents Sun, 18 Oct 2026 08:55:29 +0000 | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_2.0.5+dfsg-2_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 2963516 bytes: control archive=652 bytes. 442 bytes, 12 lines control 301 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 2.0.5+dfsg-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3446 Depends: snap-aligner (= 2.0.5+dfsg-2) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: 4082b0cb1415a7f968743cede5f237abaaa2ddf8 9284670bf7a7bfd46612918911ef2ac0bac58b01 drwxr-xr-x root/root 0 2026-10-04 19:25 ./ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/40/ -rw-r--r-- root/root 1618184 2026-10-04 19:25 ./usr/lib/debug/.build-id/40/82b0cb1415a7f968743cede5f237abaaa2ddf8.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/92/ -rw-r--r-- root/root 1619576 2026-10-04 19:25 ./usr/lib/debug/.build-id/92/84670bf7a7bfd46612918911ef2ac0bac58b01.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 276176 2026-10-04 19:25 ./usr/lib/debug/.dwz/x86_64-linux-gnu/snap-aligner.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_2.0.5+dfsg-2_amd64.deb ----------------------------------- new Debian package, version 2.0. size 836688 bytes: control archive=1784 bytes. 965 bytes, 18 lines control 2591 bytes, 32 lines md5sums Package: snap-aligner Version: 2.0.5+dfsg-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2101 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: https://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2026-10-04 19:25 ./ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/bin/ -rwxr-xr-x root/root 809616 2026-10-04 19:25 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 805520 2026-10-04 19:25 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2026-10-04 17:00 ./usr/share/doc-base/snap-aligner.snap-aligner-manual -rw-r--r-- root/root 833 2026-10-04 17:00 ./usr/share/doc-base/snap-aligner.snap-aligner-quickstart drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2025-05-06 20:19 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78557 2025-05-06 20:19 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2026-10-04 17:00 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1187 2025-05-06 20:19 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2026-10-04 17:00 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 398044 2025-05-06 20:19 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 686 2026-10-04 19:25 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2026-10-04 17:00 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 4235 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 30 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 6461 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 30 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 751 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1066 2026-10-04 17:00 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/man/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/man/man1/ -rw-r--r-- root/root 226 2026-10-04 19:25 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 247 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 247 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 247 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 234 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-UbiACw/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Sources [1357 B] Get:5 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ Packages [1436 B] Fetched 3408 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:amd64 shared-mime-info t1utils ucf unzip 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 23.8 MB of archives. After this operation, 98.5 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-UbiACw/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [832 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.6 [10.3 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20260608-2 [125 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-1 arm64 2:4.0.7-1 [66.2 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.7-1 [971 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.6.5-1 [1507 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20260816 [134 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-12+b1 [9412 B] Get:10 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:11 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0056 [47.1 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.8.0-2 [25.9 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.90.1-2 [1439 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b4 [754 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.17.0-1 [63.0 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.24.0-1 [129 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.2.0-4+b1 [293 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-5 [107 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.26.5-1 [440 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.21.0-2+b1 [46.9 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.13-1 [1434 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-3 [30.2 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.4-1+b2 [19.4 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-3 [74.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6+b2 [9444 B] Get:26 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-3 [314 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-3 [125 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-12 [17.3 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-12 [52.4 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.14+dfsg-2 [173 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.70.0-1 [87.9 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.24.0-1 [22.5 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.23.3-1 [61.0 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-6 [235 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libcurl4-gnutls arm64 8.23.0-1 [394 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libfyaml0 arm64 0.9.4-1 [245 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 3.1.1-1 [132 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.29-1 [58.5 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.2.1-1 [230 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.2.1-1 [624 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.69-1 [32.5 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 distro-info-data all 2026.10.12-1 [6372 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.61-5 [84.8 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2+b2 [57.6 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.12.4-2 [804 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.9-8 [118 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.8.1-1 [127 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-4 [22.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.53.4-2 [901 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.9-8 [568 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.43+b1 [64.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b5 [10.7 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-3+b1 [15.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b7 [22.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.65-1 [44.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-2+b2 [116 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.37-1 [113 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-2+b2 [96.7 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.72-1 [217 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b8 [35.4 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.51-1 [23.2 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libparams-someutil-perl arm64 1.12-1 [24.4 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.992-1 [49.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.51-1 [137 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-3+b2 [30.9 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b7 [98.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.87-1+b1 [24.0 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libdistro-info-perl all 1.20 [5488 B] Get:98 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b6 [28.3 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:103 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:104 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libfile-libmagic-perl arm64 1.23-2+b4 [31.2 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:121 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.96-2 [327 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.83-1 [186 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-xs-perl arm64 0.59-1+b1 [33.1 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.16-2 [38.5 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b2 [50.7 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1+b2 [33.8 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:145 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.6.2-1+b1 [141 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-4+b1 [11.3 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1+b3 [12.4 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b6 [17.6 kB] Get:152 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b5 [11.5 kB] Get:153 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.637-1+b4 [41.1 kB] Get:154 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.010+ds-1 [102 kB] Get:156 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.010+ds-1 [104 kB] Get:157 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:158 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.51-1 [64.5 kB] Get:159 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.31-1+b1 [27.0 kB] Get:160 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b6 [24.5 kB] Get:161 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b6 [8868 B] Get:162 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1+b2 [13.3 kB] Get:163 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b3 [173 kB] Get:164 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:165 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.46-1+b1 [77.5 kB] Get:166 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.75-1+b1 [27.8 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:168 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:169 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:170 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:171 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-8+b1 [299 kB] Get:172 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2+b1 [47.8 kB] Get:173 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.910.0+ds-1+b1 [44.9 kB] Get:174 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.13-2 [64.5 kB] Get:175 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b2 [82.0 kB] Get:176 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.5-1 [81.0 kB] Get:177 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b2 [57.5 kB] Get:178 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-31 [163 kB] Get:179 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.142.0 [1040 kB] Preconfiguring packages ... Fetched 23.8 MB in 0s (59.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 18840 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:arm64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1_arm64.deb ... Unpacking libproc2-1:arm64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1_arm64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.5-1_arm64.deb ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.9-8_arm64.deb ... Unpacking gpgconf (2.4.9-8) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../046-libksba8_1.8.1-1_arm64.deb ... Unpacking libksba8:arm64 (1.8.1-1) ... Selecting previously unselected package libnpth0t64:arm64. 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../178-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43+b1) ... Setting up liblz1:arm64 (1.16-2) ... Setting up libberkeleydb-perl:arm64 (0.66-2+b2) ... Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-12+b1) ... Setting up libnpth0t64:arm64 (1.8-4) ... Setting up libkeyutils1:arm64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b1) ... Setting up libmouse-perl:arm64 (2.6.2-1+b1) ... Setting up libgpg-error0:arm64 (1.61-5) ... Setting up libdata-messagepack-perl (1.02-3+b2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.51-1) ... Setting up libyaml-0-2:arm64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4+b1) ... Setting up distro-info-data (2026.10.12-1) ... Setting up libcpanel-json-xs-perl:arm64 (4.51-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.87-1+b1) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:arm64 (1.2.0-4+b1) ... Setting up libsqlite3-0:arm64 (3.53.4-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.910.0+ds-1+b1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:arm64 (1.70.0-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.12.4-2) ... Setting up liblzo2-2:arm64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:arm64 (2.3.8-5) ... Setting up libcom-err2:arm64 (1.47.4-1+b2) ... Setting up libparams-someutil-perl (1.12-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.010+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:arm64 (0.9.4-1) ... Setting up libkrb5support0:arm64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-12) ... Setting up patchutils (0.4.5-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b7) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libproc2-1:arm64 (2:4.0.7-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b5) ... Setting up t1utils (1.41-4+b2) ... Setting up diffstat (1.69-1) ... Setting up libvariable-magic-perl (0.65-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libdata-optlist-perl (0.115-1) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b5) ... Setting up libfile-libmagic-perl (1.23-2+b4) ... Setting up libncursesw6:arm64 (6.6+20260608-2) ... Setting up libk5crypto3:arm64 (1.22.1-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-12) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b3) ... Setting up libnghttp3-9:arm64 (1.17.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libsub-name-perl:arm64 (0.28-1+b3) ... Setting up libffi8:arm64 (3.8.0-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.637-1+b4) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up lzop (1.04-2+b2) ... Setting up libassuan9:arm64 (3.0.2-2+b2) ... Setting up procps (2:4.0.7-1) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libtasn1-6:arm64 (4.21.0-2+b1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:arm64 (1.24.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b8) ... Setting up libkrb5-3:arm64 (1.22.1-3) ... Setting up libstemmer0d:arm64 (3.1.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:arm64 (1.11.1-6) ... Setting up libterm-readkey-perl (2.38-2+b6) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.6.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b6) ... Setting up libperlio-gzip-perl (0.20-1+b6) ... Setting up readline-common (8.3-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.010+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2.1+b2) ... Setting up libldap2:arm64 (2.6.14+dfsg-2) ... Setting up liburi-perl (5.37-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libsub-exporter-perl (0.992-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b6) ... Setting up libnet-ssleay-perl:arm64 (1.96-2) ... Setting up libksba8:arm64 (1.8.1-1) ... Setting up libhttp-date-perl (6.08-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libdistro-info-perl (1.20) ... Setting up libpsl5t64:arm64 (0.23.3-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-3+b1) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.51-1) ... Setting up shared-mime-info (2.4-5+b4) ... Setting up libp11-kit0:arm64 (0.26.5-1) ... Setting up libgssapi-krb5-2:arm64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libreadline8t64:arm64 (8.3-4) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhtml-parser-perl:arm64 (3.83-2+b2) ... Setting up gpgconf (2.4.9-8) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up gpg (2.4.9-8) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:arm64 (3.8.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:arm64 (0.3.29-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b7) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.24.0-1) ... Setting up libcurl4-gnutls:arm64 (8.23.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:arm64 (1.2.1-1) ... Setting up liblist-someutils-xs-perl:arm64 (0.59-1+b1) ... Setting up appstream (1.2.1-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.142.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for man-db (2.13.1-1+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Sun, 18 Oct 2026 08:56:32 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 18 Oct 2026 08:56:32 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 18 Oct 2026 08:56:36 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 322 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 59 Job: snap-aligner_2.0.5+dfsg-2 Lintian: pass Machine Architecture: arm64 Package: snap-aligner Package-Time: 428 Source-Version: 2.0.5+dfsg-2 Space: n/a Status: successful Version: 2.0.5+dfsg-2 -------------------------------------------------------------------------------- Finished at 2026-10-18T08:55:26Z Build needed 00:07:08, no disk space