sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | snap-aligner 2.0.5+dfsg-2 (s390x) Wed, 28 Oct 2026 07:17:49 +0000 | +==============================================================================+ Package: snap-aligner Version: 2.0.5+dfsg-2 Source Version: 2.0.5+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.CqDQsiUZDi... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 28 Oct 2026 07:17:52 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.1 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main s390x Packages [10.3 MB] Fetched 33.4 MB in 3s (12.3 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils libapt-pkg7.0 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3239 kB of archives. After this operation, 42.0 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libapt-pkg7.0 amd64 3.3.5 [1292 kB] Get:2 http://localhost:3142/debian unstable/main amd64 apt amd64 3.3.5 [1580 kB] Get:3 http://localhost:3142/debian unstable/main amd64 apt-utils amd64 3.3.5 [367 kB] Fetched 3239 kB in 0s (143 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.3.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.3.5) over (3.3.4) ... Setting up libapt-pkg7.0:amd64 (3.3.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../archives/apt_3.3.5_amd64.deb ... Unpacking apt (3.3.5) over (3.3.4) ... Setting up apt (3.3.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../apt-utils_3.3.5_amd64.deb ... Unpacking apt-utils (3.3.5) over (3.3.4) ... Setting up apt-utils (3.3.5) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 28 Oct 2026 07:17:58 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snap-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap-aligner.git Please use: git clone https://salsa.debian.org/med-team/snap-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2037 kB of source archives. Get:1 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-2 (dsc) [1775 B] Get:2 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-2 (tar) [2026 kB] Get:3 http://localhost:3142/debian unstable/main snap-aligner 2.0.5+dfsg-2 (diff) [8756 B] Fetched 2037 kB in 0s (36.0 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 28 Oct 2026 07:18:00 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-nkccb9/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Sources [775 B] Get:5 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Packages [818 B] Fetched 2202 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: architecture-properties:s390x autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl liblsan0:s390x liblsan0-s390x-cross libmagic-mgc libmagic1t64 libpipeline1 libsimde-dev libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-s390x-cross m4 man-db po-debconf sensible-utils zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x manpages-dev:s390x libstdc++-16-doc:s390x libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:s390x libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties:s390x autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl liblsan0:s390x liblsan0-s390x-cross libmagic-mgc libmagic1t64 libpipeline1 libsimde-dev libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-s390x-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 92.0 MB of archives. After this operation, 377 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-10+b1 [15.1 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://localhost:3142/debian unstable/main s390x architecture-properties s390x 0.2.6+b2 [2632 B] Get:14 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-3 [892 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:19 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.47.50.20261021-1 [1442 kB] Get:20 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:21 http://localhost:3142/debian unstable/main amd64 cpp-16-s390x-linux-gnu amd64 16.2.0-3cross1 [11.1 MB] Get:22 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:16.1.0-3 [4468 B] Get:23 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.43-3cross8 [1222 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 16.2.0-3cross1 [52.2 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 16.2.0-3cross1 [140 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 16.2.0-3cross1 [26.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 16.2.0-3cross1 [9056 B] Get:29 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 16.2.0-3cross1 [2657 kB] Get:30 http://localhost:3142/debian unstable/main amd64 liblsan0-s390x-cross all 16.2.0-3cross1 [1233 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libtsan2-s390x-cross all 16.2.0-3cross1 [2396 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 16.2.0-3cross1 [810 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 16.2.0-3cross1 [1097 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-s390x-cross all 16.2.0-3cross1 [1181 kB] Get:35 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu amd64 16.2.0-3cross1 [21.1 MB] Get:36 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:16.1.0-3 [1440 B] Get:37 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 7.2.12-1 [12.3 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.43-3cross8 [1614 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-s390x-cross all 16.2.0-3cross1 [2711 kB] Get:40 http://localhost:3142/debian unstable/main amd64 g++-16-s390x-linux-gnu amd64 16.2.0-3cross1 [12.3 MB] Get:41 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:16.1.0-3 [1200 B] Get:42 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:43 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:45 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:49 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:50 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:53 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:54 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:55 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:56 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:57 http://localhost:3142/debian unstable/main s390x gcc-16-base s390x 16.2.0-4 [39.3 kB] Get:58 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:59 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 16.2.0-4 [52.2 kB] Get:60 http://localhost:3142/debian unstable/main s390x libc-gconv-modules-extra s390x 2.43-7 [1077 kB] Get:61 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.43-7 [1475 kB] Get:62 http://localhost:3142/debian unstable/main s390x libasan8 s390x 16.2.0-4 [2664 kB] Get:63 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 16.2.0-4 [8960 B] Get:64 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.43-7 [1621 kB] Get:65 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 16.2.0-4 [140 kB] Get:66 http://localhost:3142/debian unstable/main s390x libitm1 s390x 16.2.0-4 [26.9 kB] Get:67 http://localhost:3142/debian unstable/main s390x liblsan0 s390x 16.2.0-4 [1235 kB] Get:68 http://localhost:3142/debian unstable/main s390x libtsan2 s390x 16.2.0-4 [2405 kB] Get:69 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 16.2.0-4 [835 kB] Get:70 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 16.2.0-4 [1098 kB] Get:71 http://localhost:3142/debian unstable/main s390x libgcc-16-dev s390x 16.2.0-4 [1189 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Get:73 http://localhost:3142/debian unstable/main s390x libstdc++-16-dev s390x 16.2.0-4 [2739 kB] Get:74 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.2-4 [90.6 kB] Get:75 http://localhost:3142/debian unstable/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.2-4 [918 kB] Preconfiguring packages ... Fetched 92.0 MB in 0s (206 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-10+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-10+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. 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Unpacking binutils-s390x-linux-gnu (2.47.50.20261021-1) ... Selecting previously unselected package gcc-16-s390x-linux-gnu-base:amd64. Preparing to unpack .../18-gcc-16-s390x-linux-gnu-base_16.2.0-3cross1_amd64.deb ... Unpacking gcc-16-s390x-linux-gnu-base:amd64 (16.2.0-3cross1) ... Selecting previously unselected package cpp-16-s390x-linux-gnu. Preparing to unpack .../19-cpp-16-s390x-linux-gnu_16.2.0-3cross1_amd64.deb ... Unpacking cpp-16-s390x-linux-gnu (16.2.0-3cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../20-cpp-s390x-linux-gnu_4%3a16.1.0-3_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:16.1.0-3) ... Selecting previously unselected package gcc-16-cross-base. Preparing to unpack .../21-gcc-16-cross-base_16.2.0-3cross1_all.deb ... Unpacking gcc-16-cross-base (16.2.0-3cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../22-libc6-s390x-cross_2.43-3cross8_all.deb ... 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Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../74-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libc-gconv-modules-extra:s390x (2.43-7) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up libsimde-dev (0.8.4~rc3-5) ... Setting up binutils-s390x-linux-gnu (2.47.50.20261021-1) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:s390x (0.2.6+b2) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Setting up libdebhelper-perl (14.5) ... Setting up libc6-s390x-cross (2.43-3cross8) ... Setting up gcc-16-s390x-linux-gnu-base:amd64 (16.2.0-3cross1) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up gcc-16-base:s390x (16.2.0-4) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (7.2.12-1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up libgcc-s1-s390x-cross (16.2.0-3cross1) ... Setting up autoconf (2.73-2) ... Setting up libitm1-s390x-cross (16.2.0-3cross1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libc6-dev-s390x-cross (2.43-3cross8) ... Setting up liblsan0-s390x-cross (16.2.0-3cross1) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libgomp1-s390x-cross (16.2.0-3cross1) ... Setting up liblocale-gettext-perl (1.07-10+b1) ... Setting up automake (1:1.19-3) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libstdc++6-s390x-cross (16.2.0-3cross1) ... Setting up cpp-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up libatomic1-s390x-cross (16.2.0-3cross1) ... Setting up libasan8-s390x-cross (16.2.0-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (23) ... Setting up libtsan2-s390x-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up libubsan1-s390x-cross (16.2.0-3cross1) ... Setting up cpp-s390x-linux-gnu (4:16.1.0-3) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up gcc-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up gcc-s390x-linux-gnu (4:16.1.0-3) ... Setting up libstdc++-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up g++-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up g++-s390x-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-s390x (12.12) ... Setting up libgcc-s1:s390x (16.2.0-4) ... Setting up libc6:s390x (2.43-7) ... Setting up libasan8:s390x (16.2.0-4) ... Setting up libc6-dev:s390x (2.43-7) ... Setting up libtsan2:s390x (16.2.0-4) ... Setting up libstdc++6:s390x (16.2.0-4) ... Setting up liblsan0:s390x (16.2.0-4) ... Setting up libitm1:s390x (16.2.0-4) ... Setting up zlib1g:s390x (1:1.3.dfsg+really1.3.2-4) ... Setting up libgomp1:s390x (16.2.0-4) ... Setting up libatomic1:s390x (16.2.0-4) ... Setting up libubsan1:s390x (16.2.0-4) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.2-4) ... Setting up libgcc-16-dev:s390x (16.2.0-4) ... Setting up libstdc++-16-dev:s390x (16.2.0-4) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 28 Oct 2026 07:18:12 +0000 | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment Wed, 28 Oct 2026 07:18:13 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-s390x-cross_16.2.0-3cross1 linux-libc-dev_7.2.12-1 Package versions: apt_3.3.5 apt-utils_3.3.5 architecture-properties_0.2.6+b2 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-s390x-linux-gnu_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-4 cpp-16-s390x-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-4 cpp-s390x-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.1.0-3 g++-16_16.2.0-4 g++-16-s390x-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-4 g++-s390x-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-4 gcc-16-base_16.2.0-4 gcc-16-cross-base_16.2.0-3cross1 gcc-16-s390x-linux-gnu_16.2.0-3cross1 gcc-16-s390x-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-4 gcc-s390x-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.5 libarchive-zip-perl_1.68-1 libasan8_16.2.0-4 libasan8-s390x-cross_16.2.0-3cross1 libatomic1_16.2.0-4 libatomic1-s390x-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47.50.20261021-1 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libc6-dev-s390x-cross_2.43-3cross8 libc6-s390x-cross_2.43-3cross8 libcap-ng0_0.9.6-1+b1 libcc1-0_16.2.0-4 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-4 libgcc-16-dev-s390x-cross_16.2.0-3cross1 libgcc-s1_16.2.0-4 libgcc-s1-s390x-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-4 libgomp1-s390x-cross_16.2.0-3cross1 libgprofng0_2.47.50.20261021-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-4 libisl23_0.28-1 libitm1_16.2.0-4 libitm1-s390x-cross_16.2.0-3cross1 libjansson4_2.15.1-1 liblocale-gettext-perl_1.07-10+b1 liblsan0_16.2.0-4 liblsan0-s390x-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libquadmath0_16.2.0-4 libseccomp2_2.6.1-1+b2 libselinux1_3.11-2.1+b1 libsframe3_2.47.50.20261021-1 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42.4-1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-s390x-cross_16.2.0-3cross1 libsystemd0_262.1-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-4 libtsan2-s390x-cross_16.2.0-3cross1 libubsan1_16.2.0-4 libubsan1-s390x-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262.1-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1+b1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.12-1 linux-libc-dev-s390x-cross_7.2.12-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-7 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 zlib1g-dev_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Wed, 28 Oct 2026 07:18:13 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snap-aligner Binary: snap-aligner Architecture: any Version: 2.0.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Homepage: https://snap.cs.berkeley.edu/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, help2man, zlib1g-dev, libsimde-dev Package-List: snap-aligner deb science optional arch=any Checksums-Sha1: 9ebb19c38e7627f2b72ee26f388ed2f56badc639 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 0951c07ddadbc95f19d2d6f2df117d8d85e60079 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz Checksums-Sha256: 79e0f15a019bae7b8cb549778beb11ab267966a6e220d0fa7f01b83d6885627f 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz 92585a9b1157c0f0dc6b35d0dbc7e9e492d823964301d8e1ef0fcf7725041f73 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz Files: 748a7f66cb99b6d2c3a7337d3324ed51 2026200 snap-aligner_2.0.5+dfsg.orig.tar.xz a77465d78eb9a839256a8157b9c294bc 8756 snap-aligner_2.0.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmrCqO0ACgkQQc5/C58b izK3Sgf8CO7JfamQAPlmjE7XkJ0fKFUFeDmFAIxKQjsMOBU5GqCDT2Ytp3apz0eV MONSAM/avXS4m9VebLFZ4yOG4S2966eW2xd3uFm7/Pmjl57IrjeB1MPD+gLS7z2T VIYAshyxDcLbk7umb6wiPQkkH8KBEt3n9fbpUHh0cQP2yDpPAEr5nO1D/YDEYz3s xjk2bVRnnVlAxfAInh5jlcxMMUeqXuaMS0alhOdFC1ot63t9dbfRAgYzH+31u83V N/xlrLbO1jrcNDMayV6VDl+nW67pfj9ilzklpEwWvIbwzFBXQeBsnUp3s1AdaPm1 pNlAC1JZKxGRFJghvW7dBTUdLyfkkg== =Kf0j -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./snap-aligner_2.0.5+dfsg-2.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./snap-aligner_2.0.5+dfsg-2.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting snap-aligner in /build/reproducible-path/snap-aligner-2.0.5+dfsg dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking snap-aligner_2.0.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying non-x86-and-kfreebsd.patch dpkg-source: info: applying drop-msse.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying detach-threads.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.lE5i2uCScB/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package snap-aligner dpkg-buildpackage: info: source version 2.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_auto_clean make -j1 clean make[2]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' rm -f SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o snap-aligner unit_tests SNAPCommand snap SNAP make[2]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' rm -f debian/*.1 rm -f */*.d */*/*.d make[1]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' dh_auto_build make -j1 INSTALL="install --strip-program=true" CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[2]: Entering directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGap.o SNAPLib/AffineGap.cpp In file included from SNAPLib/AffineGap.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AffineGapVectorized.o SNAPLib/AffineGapVectorized.cpp In file included from SNAPLib/AffineGapVectorized.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp In file included from SNAPLib/AlignerContext.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignerOptions.h:29, from SNAPLib/AlignerOptions.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp In file included from SNAPLib/AlignerStats.h:29, from SNAPLib/AlignerStats.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentAdjuster.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/GenomeIndex.h:27, from SNAPLib/AlignmentAdjuster.h:27, from SNAPLib/AlignmentAdjuster.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/AlignmentResult.cpp:23: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ApproximateCounter.o SNAPLib/ApproximateCounter.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/ApproximateCounter.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp In file included from SNAPLib/SAM.h:22, from SNAPLib/Bam.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/BaseAligner.cpp:29: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp In file included from SNAPLib/BigAlloc.cpp:24: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp In file included from SNAPLib/BufferedAsync.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/ChimericPairedEndAligner.h:27, from SNAPLib/ChimericPairedEndAligner.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/FASTA.h:27, from SNAPLib/CommandProcessor.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp In file included from SNAPLib/Compat.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp In file included from SNAPLib/DataReader.cpp:22: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/DataReader.cpp: In static member function ‘static bool DecompressDataReader::decompress(z_stream*, ThreadHeap*, char*, _int64, _int64*, char*, _int64, _int64*, DecompressMode)’: SNAPLib/DataReader.cpp:2052:53: warning: format ‘%llx’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2052 | fprintf(stderr, "\n0x%llx\t", offset); | ~~~^ ~~~~~~ | | | | | _int64 {aka long int} | long long unsigned int | %lx SNAPLib/DataReader.cpp: In member function ‘char* DecompressDataReader::findPointer(void*)’: SNAPLib/DataReader.cpp:2105:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2105 | sprintf(result, "compressed #%d @ %lld", i, (char*)p - e->compressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2109:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2109 | sprintf(result, "decompressed #%d %lld", i, (char*) p - e->decompressed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp:2113:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 2113 | sprintf(result, "extra #%d %lld", i, (char*) p - e->decompressed - extraBytes); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int long int | %ld SNAPLib/DataReader.cpp: In static member function ‘static void DecompressDataReader::decompressThread(void*)’: SNAPLib/DataReader.cpp:2261:174: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2261:198: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2261 | fprintf(stderr, "Bug in DecompressDataReader::decompressThread(); don't have enough decompress buffer when we thought we'd assured it. Existing size %lld, needed (at least) %lld, entry @0x%p\n", entry->decompressedSize, output, entry); | ~~~^ ~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/DataReader.cpp:2265:74: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2265 | fprintf(stderr, "error reading BAM file at offset %lld\n", reader->getFileOffset()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp In file included from SNAPLib/DataWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Error.o SNAPLib/Error.cpp In file included from SNAPLib/Error.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Error.cpp: In function ‘void WriteProgressCounter(const char*, _int64)’: SNAPLib/Error.cpp:96:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 96 | fprintf(stderr,"reporter:counter:SNAP,%s,%lld\n", counterName, increment); | ~~~^ ~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp In file included from SNAPLib/FASTA.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp In file included from SNAPLib/FASTQ.h:30, from SNAPLib/FASTQ.cpp:29: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp In file included from SNAPLib/GenericFile.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_Blob.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp In file included from SNAPLib/GenericFile.h:25, from SNAPLib/GenericFile_Blob.h:26, from SNAPLib/GenericFile_map.h:26, from SNAPLib/GenericFile_map.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp In file included from SNAPLib/GenericFile_stdio.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/Genome.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Genome.cpp: In member function ‘bool Genome::saveToFile(const char*) const’: SNAPLib/Genome.cpp:216:26: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘long int’ [-Wformat=] 216 | fprintf(saveFile,"%lld %d %d\n",nBases, nContigs, GENOME_FLAG_ALT_CONTIGS_MARKED); | ~~~^ ~~~~~~ | | | | | long int | long long int | %ld SNAPLib/Genome.cpp:226:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp:226:42: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 226 | fprintf(saveFile, "%lld %x %d %lld %x %d %d %s %s\n", GenomeLocationAsInt64(contigs[i].beginningLocation), (contigs[i].isALT ? GENOME_FLAG_CONTIG_IS_ALT : 0), OriginalContigNumToInt(contigs[i].originalContigNumber), GenomeLocationAsInt64(contigs[i].projBeginningLocation), | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _int64 {aka long int} | %ld SNAPLib/Genome.cpp: In static member function ‘static const Genome* Genome::loadFromFile(const char*, unsigned int, GenomeLocation, GenomeDistance, bool)’: SNAPLib/Genome.cpp:356:47: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp:356:58: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 356 | if (7 != sscanf(contigNameBuffer, "%lld %x %d %lld %x %d %d", &contigStart, &flags, &originalContigNumber, &projContigStart, &altProjRC, &contigNameSize, &cigarLength)) { | ~~~^ ~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/Genome.cpp: In static member function ‘static bool Genome::openFileAndGetSizes(const char*, GenericFile**, GenomeDistance*, unsigned int*, bool)’: SNAPLib/Genome.cpp:497:51: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 3 has type ‘GenomeDistance*’ {aka ‘long int*’} [-Wformat=] 497 | if (NULL == retval || 3 != sscanf(linebuf,"%lld %d %d\n", nBases, nContigs, &flags)) { | ~~~^ ~~~~~~ | | | | | GenomeDistance* {aka long int*} | long long int* | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp In file included from SNAPLib/ApproximateCounter.h:3, from SNAPLib/GenomeIndex.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/GenomeIndex.cpp: In static member function ‘static bool GenomeIndex::BuildIndexToDirectory(const Genome*, int, double, const char*, unsigned int, unsigned int, bool, unsigned int, bool, const char*, unsigned int, bool)’: SNAPLib/GenomeIndex.cpp:952:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:61: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:952:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 952 | fprintf(histogramFile, "%lld larger than %d with %lld total genome locations, largest seed %lld\n", countOfTooBigForHistogram, maxHistogramEntry, sumOfTooBigForHistogram, largestSeed); | ~~~^ ~~~~~~~~~~~ | | | | long long int _uint64 {aka long unsigned int} | %ld SNAPLib/GenomeIndex.cpp:1007:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~~~~~~~~ | | | _uint64 {aka long unsigned int} SNAPLib/GenomeIndex.cpp:1007:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 10 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1007 | fprintf(indexFile,"%d %d %d %lld %d %d %d %lld %d %d", GenomeIndexFormatMajorVersion, GenomeIndexFormatMinorVersion, index->nHashTables, | ~~~^ | | | long long int | %ld 1008 | index->overflowTableSize, seedLen, chromosomePaddingSize, hashTableKeySize, totalBytesWritten, large ? 0 : 1, locationSize); | ~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} SNAPLib/GenomeIndex.cpp: In static member function ‘static GenomeIndex* GenomeIndex::loadFromDirectory(char*, bool, bool)’: SNAPLib/GenomeIndex.cpp:1879:57: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 6 has type ‘_int64*’ {aka ‘long int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int* _int64* {aka long int*} | %ld SNAPLib/GenomeIndex.cpp:1879:71: warning: format ‘%lld’ expects argument of type ‘long long int*’, but argument 10 has type ‘size_t*’ {aka ‘long unsigned int*’} [-Wformat=] 1879 | if (10 != (nRead = sscanf(indexFileBuf,"%d %d %d %lld %d %d %d %lld %d %d", &majorVersion, &minorVersion, &nHashTables, &overflowTableSize, &seedLen, &chromosomePadding, | ~~~^ | | | long long int* | %ld 1880 | &hashTableKeySize, &hashTablesFileSize, &smallHashTable, &locationSize))) { | ~~~~~~~~~~~~~~~~~~~ | | | size_t* {aka long unsigned int*} s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp In file included from SNAPLib/GzipDataWriter.h:25, from SNAPLib/GzipDataWriter.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp In file included from SNAPLib/HashTable.h:23, from SNAPLib/HashTable.cpp:20: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp In file included from SNAPLib/Histogram.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/HitDepth.o SNAPLib/HitDepth.cpp In file included from SNAPLib/HitDepth.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/PairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.h:25, from SNAPLib/IntersectingPairedEndAligner.cpp:24: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp In file included from SNAPLib/LandauVishkin.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/MultiInputReadSupplier.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp In file included from SNAPLib/PairedAligner.cpp:34: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ In file included from SNAPLib/PairedAligner.cpp:47: SNAPLib/IntersectingPairedEndAligner.h:767:71: warning: non-static data member initializers only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/IntersectingPairedEndAligner.h:767:104: warning: extended initializer lists only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 767 | Direction setPairDirection[NUM_SET_PAIRS][NUM_READS_PER_PAIR] = { {FORWARD, RC}, {RC, FORWARD} }; | ^ SNAPLib/PairedAligner.cpp: In member function ‘void PairedAlignerContext::runIterationThreadImpl(Read**)’: SNAPLib/PairedAligner.cpp:673:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 673 | fprintf(stderr, "reporter:counter:SNAP,readsAligned,%llu\n", stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp In file included from SNAPLib/PairedReadMatcher.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp In file included from SNAPLib/ParallelTask.h:25, from SNAPLib/ParallelTask.cpp:18: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ProbabilityDistance.h:3, from SNAPLib/ProbabilityDistance.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp In file included from SNAPLib/RangeSplitter.h:29, from SNAPLib/RangeSplitter.cpp:28: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Read.o SNAPLib/Read.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/Read.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadReader.o SNAPLib/ReadReader.cpp In file included from SNAPLib/ReadReader.cpp:19: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/ReadReader.cpp: In member function ‘virtual bool SimpleReadReader::getNextRead(Read*, AlignmentResult*, unsigned int*, bool*, unsigned int*, unsigned int*, const char**)’: SNAPLib/ReadReader.cpp:44:5: warning: no return statement in function returning non-void [-Wreturn-type] 44 | } | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp In file included from SNAPLib/Read.h:28, from SNAPLib/ReadSupplierQueue.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp In file included from SNAPLib/ReadWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp In file included from SNAPLib/SAM.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeHeader(const ReaderContext&, char*, size_t, size_t*, bool, int, const char**, const char*, const char*, bool) const’: SNAPLib/SAM.cpp:1292:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘long int’ [-Wformat=] 1292 | bytesConsumed += snprintf(header + bytesConsumed, headerBufferSize - bytesConsumed, "@SQ\tSN:%s\tLN:%llu%s\n", contig->name, contig->length - context.genome->getChromosomePadding(), contig->isALT ? "\tAH:*":""); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long int | %lu SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writePairs(const ReaderContext&, LandauVishkinWithCigar*, AffineGapVectorizedWithCigar*, bool, char*, size_t, size_t*, size_t*, Read**, GenomeLocation*, PairedAlignmentResult*, bool, bool, char*, bool, int*, int*, bool*, bool*) const’: SNAPLib/SAM.cpp:1854:77: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1858 | positionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:1854:95: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 1854 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%d\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 1862 | matePositionInContig[whichRead], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, LandauVishkinWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2076:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2080 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2084 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2076:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2076 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2085 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In member function ‘virtual bool SAMFormat::writeRead(const ReaderContext&, AffineGapVectorizedWithCigar*, char*, size_t, size_t*, size_t, Read*, AlignmentResult, int, GenomeLocation, Direction, bool, bool, int*, int, int, bool, char*, bool, _int64, int, int, bool, bool, Read*, AlignmentResult, GenomeLocation, Direction, bool, int, int) const’: SNAPLib/SAM.cpp:2312:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 8 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2316 | positionInContig, | ~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:91: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long unsigned int | %lu ...... 2320 | matePositionInContig, | ~~~~~~~~~~~~~~~~~~~~ | | | GenomeDistance {aka long int} SNAPLib/SAM.cpp:2312:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 13 has type ‘_int64’ {aka ‘long int’} [-Wformat=] 2312 | int charsInString = snprintf(buffer, bufferSpace, "%.*s\t%d\t%s\t%llu\t%d\t%s\t%s\t%llu\t%lld\t%.*s\t%.*s%s%.*s%s%s\tPG:Z:SNAP%s%.*s%s%s%s%.*s\n", | ~~~^ | | | long long int | %ld ...... 2321 | templateLength, | ~~~~~~~~~~~~~~ | | | _int64 {aka long int} SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2654:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:58: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp:2749:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘GenomeDistance’ {aka ‘long int’} [-Wformat=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int GenomeDistance {aka long int} | %lu SNAPLib/SAM.cpp: In static member function ‘static void SAMFormat::printRead(const Genome*, Read*, GenomeLocation)’: SNAPLib/SAM.cpp:2820:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘GenomeLocation’ {aka ‘long int’} [-Wformat=] 2820 | printf("Aligned location %s:%llu\n", | ~~~^ | | | long long unsigned int | %lu 2821 | genome->getContigAtLocation(location)->name, 2822 | location - genome->getContigAtLocation(location)->beginningLocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | GenomeLocation {aka long int} SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2650:54: note: directive argument in the range [1, 9223372036854775807] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:974, from /usr/s390x-linux-gnu/include/c++/16/cstdio:47, from /usr/s390x-linux-gnu/include/c++/16/fstream:45, from SNAPLib/stdafx.h:14, from SNAPLib/SAM.cpp:19: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2650:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2654:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2654:52: note: directive argument in the range [1, 9223372036854775807] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2654:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2745:54: note: directive argument in the range [1, 9223372036854775807] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2745:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2749:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2749:52: note: directive argument in the range [1, 9223372036854775807] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2749:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2650:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2650:54: note: directive argument in the range [1, 9223372036854775807] 2650 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2650:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2654:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2654:52: note: directive argument in the range [1, 9223372036854775807] 2654 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, LandauVishkinWithCigar*, char*, int, char*, int, const char*, GenomeDistance, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2654:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2745:55: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~ SNAPLib/SAM.cpp:2745:54: note: directive argument in the range [1, 9223372036854775807] 2745 | snprintf(clipBefore, sizeof(clipBefore), "%lluS", basesClippedBefore + extraBasesClippedBefore); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2745:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SNAPLib/SAM.cpp: In static member function ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’: SNAPLib/SAM.cpp:2749:53: warning: ‘%llu’ directive output may be truncated writing between 1 and 19 bytes into a region of size 16 [-Wformat-truncation=] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~ SNAPLib/SAM.cpp:2749:52: note: directive argument in the range [1, 9223372036854775807] 2749 | snprintf(clipAfter, sizeof(clipAfter), "%lluS", basesClippedAfter + extraBasesClippedAfter); | ^~~~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static const char* SAMFormat::computeCigarString(const Genome*, AffineGapVectorizedWithCigar*, char*, int, char*, int, const char*, const char*, GenomeDistance, int, unsigned int, GenomeDistance, unsigned int, unsigned int, unsigned int, GenomeLocation, Direction, bool, int*, int*, int*)’ at SNAPLib/SAM.cpp:2749:21: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 21 bytes into a destination of size 16 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Seed.o SNAPLib/Seed.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/Seed.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp In file included from SNAPLib/Seed.h:27, from SNAPLib/SeedSequencer.h:27, from SNAPLib/SeedSequencer.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp In file included from SNAPLib/Genome.h:26, from SNAPLib/AlignmentResult.h:29, from SNAPLib/BaseAligner.h:30, from SNAPLib/SingleAligner.cpp:27: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/SingleAligner.cpp: In member function ‘virtual void SingleAlignerContext::runIterationThreadImpl(Read*&)’: SNAPLib/SingleAligner.cpp:207:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 207 | fprintf(stderr,"reporter:counter:SNAP,readsAligned,%llu\n",stats->totalReads - readsWhenLastReported); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int long unsigned int | %lu s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp In file included from SNAPLib/SortedDataWriter.cpp:21: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Tables.o SNAPLib/Tables.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/Util.o SNAPLib/Util.cpp In file included from SNAPLib/Util.h:5, from SNAPLib/Util.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ SNAPLib/Util.cpp: In function ‘char* FormatUIntWithCommas(_uint64, char*, size_t, size_t)’: SNAPLib/Util.cpp:167:49: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 167 | sprintf(tempBuf, ",%03lld", x % 1000); | ~~~~~^ ~~~~~~~~ | | | | | _uint64 {aka long unsigned int} | long long int | %03ld SNAPLib/Util.cpp:170:46: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘_uint64’ {aka ‘long unsigned int’} [-Wformat=] 170 | sprintf(tempBuf, "%lld", x); | ~~~^ ~ | | | | | _uint64 {aka long unsigned int} | long long int | %ld s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/exit.o SNAPLib/exit.cpp In file included from SNAPLib/Error.h:25, from SNAPLib/exit.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp In file included from SNAPLib/mapq.cpp:25: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/Main.o apps/snap/Main.cpp In file included from SNAPLib/CommandProcessor.h:24, from apps/snap/Main.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/snap/stdafx.o apps/snap/stdafx.cpp s390x-linux-gnu-g++ -o snap-aligner -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/snap/Main.o apps/snap/stdafx.o -lrt -lz s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapTest.o tests/AffineGapTest.cpp In file included from SNAPLib/AffineGap.h:3, from tests/AffineGapTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/AffineGapVectorizedTest.o tests/AffineGapVectorizedTest.cpp In file included from SNAPLib/AffineGapVectorized.h:7, from tests/AffineGapVectorizedTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/EventTest.o tests/EventTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/EventTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/LandauVishkinTest.o tests/LandauVishkinTest.cpp In file included from SNAPLib/LandauVishkin.h:2, from tests/LandauVishkinTest.cpp:3: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/ProbabilityDistanceTest.o tests/ProbabilityDistanceTest.cpp In file included from tests/ProbabilityDistanceTest.cpp:2: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/TestLib.o tests/TestLib.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tests/main.o tests/main.cpp s390x-linux-gnu-g++ -o unit_tests -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Itests -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o tests/AffineGapTest.o tests/AffineGapVectorizedTest.o tests/EventTest.o tests/LandauVishkinTest.o tests/ProbabilityDistanceTest.o tests/TestLib.o tests/main.o -lrt -lz s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/SNAPCommand.cpp In file included from apps/SNAPCommand/SNAPCommand.cpp:26: SNAPLib/Compat.h:87:11: warning: ‘_MM_HINT_T0’ redefined 87 | # define _MM_HINT_T0 1 | ^~~~~~~~~~~ In file included from /usr/include/simde/x86/sse2.h:35, from SNAPLib/Compat.h:81: /usr/include/simde/x86/sse.h:3630:11: note: this is the location of the previous definition 3630 | #define _MM_HINT_T0 SIMDE_MM_HINT_T0 | ^~~~~~~~~~~ SNAPLib/Compat.h:88:11: warning: ‘_MM_HINT_T1’ redefined 88 | # define _MM_HINT_T1 2 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3632:11: note: this is the location of the previous definition 3632 | #define _MM_HINT_T1 SIMDE_MM_HINT_T1 | ^~~~~~~~~~~ SNAPLib/Compat.h:89:11: warning: ‘_MM_HINT_T2’ redefined 89 | # define _MM_HINT_T2 3 | ^~~~~~~~~~~ /usr/include/simde/x86/sse.h:3634:11: note: this is the location of the previous definition 3634 | #define _MM_HINT_T2 SIMDE_MM_HINT_T2 | ^~~~~~~~~~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apps/SNAPCommand/stdafx.o apps/SNAPCommand/stdafx.cpp echo SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o SNAPCOMMAND_OBJ is apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o echo SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o SNAP_OBJ is apps/snap/Main.o apps/snap/stdafx.o s390x-linux-gnu-g++ -o SNAPCommand -g -O2 -ffile-prefix-map=/build/reproducible-path/snap-aligner-2.0.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -O3 -fopenmp-simd -DSIMDE_ENABLE_OPENMP -MMD -ISNAPLib -Wl,-z,relro -Wl,-z,now -pthread SNAPLib/AffineGap.o SNAPLib/AffineGapVectorized.o SNAPLib/AlignerContext.o SNAPLib/AlignerOptions.o SNAPLib/AlignerStats.o SNAPLib/AlignmentAdjuster.o SNAPLib/AlignmentResult.o SNAPLib/ApproximateCounter.o SNAPLib/Bam.o SNAPLib/BaseAligner.o SNAPLib/BigAlloc.o SNAPLib/BufferedAsync.o SNAPLib/ChimericPairedEndAligner.o SNAPLib/CommandProcessor.o SNAPLib/Compat.o SNAPLib/DataReader.o SNAPLib/DataWriter.o SNAPLib/Error.o SNAPLib/FASTA.o SNAPLib/FASTQ.o SNAPLib/GenericFile.o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_stdio.o SNAPLib/Genome.o SNAPLib/GenomeIndex.o SNAPLib/GzipDataWriter.o SNAPLib/HashTable.o SNAPLib/Histogram.o SNAPLib/HitDepth.o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/LandauVishkin.o SNAPLib/MultiInputReadSupplier.o SNAPLib/PairedAligner.o SNAPLib/PairedReadMatcher.o SNAPLib/ParallelTask.o SNAPLib/ProbabilityDistance.o SNAPLib/RangeSplitter.o SNAPLib/Read.o SNAPLib/ReadReader.o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadWriter.o SNAPLib/SAM.o SNAPLib/Seed.o SNAPLib/SeedSequencer.o SNAPLib/SingleAligner.o SNAPLib/SortedDataWriter.o SNAPLib/Tables.o SNAPLib/Util.o SNAPLib/exit.o SNAPLib/mapq.o SNAPLib/stdafx.o apps/SNAPCommand/SNAPCommand.o apps/SNAPCommand/stdafx.o -lrt -lz make[2]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./snap-aligner > debian/snap-aligner.1 for option in index single paired; do help2man \ --no-discard-stderr --no-info --version-string="2.0.5" \ --include=debian/snap-aligner-${option}-man-include \ --help-option=" " "./snap-aligner ${option}" > \ debian/snap-aligner-${option}.1; done help2man --no-discard-stderr --no-info --version-string="2.0.5" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 make[1]: Leaving directory '/build/reproducible-path/snap-aligner-2.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/snap-aligner/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap-aligner' in '../snap-aligner_2.0.5+dfsg-2_s390x.deb'. dpkg-deb: building package 'snap-aligner-dbgsym' in '../snap-aligner-dbgsym_2.0.5+dfsg-2_s390x.deb'. dpkg-genbuildinfo --build=any -O../snap-aligner_2.0.5+dfsg-2_s390x.buildinfo dpkg-genchanges --build=any -O../snap-aligner_2.0.5+dfsg-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-28T07:19:36Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Wed, 28 Oct 2026 07:19:36 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/snap-aligner-2.0.5+dfsg/ -------------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/snap-aligner-2.0.5+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 28 Oct 2026 07:19:36 +0000 | +------------------------------------------------------------------------------+ snap-aligner_2.0.5+dfsg-2_s390x.changes: ---------------------------------------- Format: 1.8 Date: Sun, 04 Oct 2026 21:25:00 +0200 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.0.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: snap-aligner - Scalable Nucleotide Alignment Program Closes: 848589 Changes: snap-aligner (2.0.5+dfsg-2) unstable; urgency=medium . * Team upload. * Detach threads created in StartNewThread to stop leaking thread stacks. Closes: #848589. * Drop "Rules-Requires-Root: no" (default). * Drop "Priority: optional" (default). * Update standards-version. * Fine-tune salsa-ci.yml. 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+------------------------------------------------------------------------------+ | Buildinfo Wed, 28 Oct 2026 07:19:37 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: snap-aligner Binary: snap-aligner snap-aligner-dbgsym Architecture: s390x Version: 2.0.5+dfsg-2 Checksums-Md5: 0ddbe756b97a5c2443af1a7464225cb8 2745680 snap-aligner-dbgsym_2.0.5+dfsg-2_s390x.deb 3109e5872c43be1ee6a6c8e984294ff2 859140 snap-aligner_2.0.5+dfsg-2_s390x.deb Checksums-Sha1: 9a11d761221490b9cbc85cc9f807a23f4e71e57f 2745680 snap-aligner-dbgsym_2.0.5+dfsg-2_s390x.deb 6607f069d2f819ac67181306ea5e4524ef8b9dd5 859140 snap-aligner_2.0.5+dfsg-2_s390x.deb Checksums-Sha256: d936c54581d8a043d6a347c94140901164684a91f5d3cecac6dc226bf120c723 2745680 snap-aligner-dbgsym_2.0.5+dfsg-2_s390x.deb 340aee38ef6b21cd9d34a4752b18d5b2264d3b348856efbcb9683425bc9cb916 859140 snap-aligner_2.0.5+dfsg-2_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 28 Oct 2026 07:19:36 +0000 Build-Path: /build/reproducible-path/snap-aligner-2.0.5+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6+b2), autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-4), cpp-16-x86-64-linux-gnu (= 16.2.0-4), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-4), g++-16-x86-64-linux-gnu (= 16.2.0-4), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-x86-64-linux-gnu (= 16.2.0-4), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.24.2-2), gzip (= 1.14-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libatomic1 (= 16.2.0-4), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47.50.20261021-1), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1+b1), libcc1-0 (= 16.2.0-4), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-4), libgprofng0 (= 2.47.50.20261021-1), libhwasan0 (= 16.2.0-4), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), liblocale-gettext-perl (= 1.07-10+b1), liblsan0 (= 16.2.0-4), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.2.0-4), libseccomp2 (= 2.6.1-1+b2), libselinux1 (= 3.11-2.1+b1), libsframe3 (= 2.47.50.20261021-1), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42.4-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsystemd0 (= 262.1-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-7), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1791141900" +------------------------------------------------------------------------------+ | Package contents Wed, 28 Oct 2026 07:19:37 +0000 | +------------------------------------------------------------------------------+ snap-aligner-dbgsym_2.0.5+dfsg-2_s390x.deb ------------------------------------------ new Debian package, version 2.0. size 2745680 bytes: control archive=648 bytes. 442 bytes, 12 lines control 300 bytes, 3 lines md5sums Package: snap-aligner-dbgsym Source: snap-aligner Version: 2.0.5+dfsg-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 4716 Depends: snap-aligner (= 2.0.5+dfsg-2) Section: debug Priority: optional Description: debug symbols for snap-aligner Build-Ids: 770c08817ec21a8247c5301358ebd32eede9f2dd d1084ce2bf3e9cb50c7339d012434f181fb411a7 drwxr-xr-x root/root 0 2026-10-04 19:25 ./ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/77/ -rw-r--r-- root/root 2266416 2026-10-04 19:25 ./usr/lib/debug/.build-id/77/0c08817ec21a8247c5301358ebd32eede9f2dd.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.build-id/d1/ -rw-r--r-- root/root 2269168 2026-10-04 19:25 ./usr/lib/debug/.build-id/d1/084ce2bf3e9cb50c7339d012434f181fb411a7.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 278848 2026-10-04 19:25 ./usr/lib/debug/.dwz/s390x-linux-gnu/snap-aligner.debug drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner-dbgsym -> snap-aligner snap-aligner_2.0.5+dfsg-2_s390x.deb ----------------------------------- new Debian package, version 2.0. size 859140 bytes: control archive=1784 bytes. 965 bytes, 18 lines control 2591 bytes, 32 lines md5sums Package: snap-aligner Version: 2.0.5+dfsg-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2329 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: https://snap.cs.berkeley.edu/ Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing. drwxr-xr-x root/root 0 2026-10-04 19:25 ./ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/bin/ -rwxr-xr-x root/root 924240 2026-10-04 19:25 ./usr/bin/SNAPCommand -rwxr-xr-x root/root 924240 2026-10-04 19:25 ./usr/bin/snap-aligner drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc-base/ -rw-r--r-- root/root 815 2026-10-04 17:00 ./usr/share/doc-base/snap-aligner.snap-aligner-manual -rw-r--r-- root/root 833 2026-10-04 17:00 ./usr/share/doc-base/snap-aligner.snap-aligner-quickstart drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner/ -rw-r--r-- root/root 103 2025-05-06 20:19 ./usr/share/doc/snap-aligner/NOTICE.txt -rw-r--r-- root/root 78557 2025-05-06 20:19 ./usr/share/doc/snap-aligner/QuickStart.pdf.gz -rw-r--r-- root/root 670 2026-10-04 17:00 ./usr/share/doc/snap-aligner/README.Debian -rw-r--r-- root/root 1187 2025-05-06 20:19 ./usr/share/doc/snap-aligner/README.md -rw-r--r-- root/root 434 2026-10-04 17:00 ./usr/share/doc/snap-aligner/README.test -rw-r--r-- root/root 398044 2025-05-06 20:19 ./usr/share/doc/snap-aligner/SNAP User Manual.pdf.gz -rw-r--r-- root/root 686 2026-10-04 19:25 ./usr/share/doc/snap-aligner/changelog.Debian.gz -rw-r--r-- root/root 3972 2026-10-04 17:00 ./usr/share/doc/snap-aligner/copyright drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/doc/snap-aligner/examples/ -rw-r--r-- root/root 592 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest.sam -rw-r--r-- root/root 611 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-fq-datatest2.sam -rw-r--r-- root/root 717 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest.sam -rw-r--r-- root/root 726 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/correct-sam-datatest2.sam -rw-r--r-- root/root 612 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.bam -rw-r--r-- root/root 210 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fa -rw-r--r-- root/root 426 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.fq -rw-r--r-- root/root 720 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest.sam -rw-r--r-- root/root 420 2025-05-06 20:19 ./usr/share/doc/snap-aligner/examples/datatest2.fa drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/ drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/ -rw-r--r-- root/root 4235 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/Genome -rw-r--r-- root/root 30 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest/GenomeIndex drwxr-xr-x root/root 0 2026-10-04 16:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/ -rw-r--r-- root/root 6461 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/Genome -rw-r--r-- root/root 30 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/datatest2/GenomeIndex -rw-r--r-- root/root 751 2026-10-04 17:00 ./usr/share/doc/snap-aligner/examples/ref/output.sam -rw-r--r-- root/root 1066 2026-10-04 17:00 ./usr/share/doc/snap-aligner/run-unit-test drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/man/ drwxr-xr-x root/root 0 2026-10-04 19:25 ./usr/share/man/man1/ -rw-r--r-- root/root 923 2026-10-04 19:25 ./usr/share/man/man1/SNAPCommand.1.gz -rw-r--r-- root/root 940 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-index.1.gz -rw-r--r-- root/root 942 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-paired.1.gz -rw-r--r-- root/root 941 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner-single.1.gz -rw-r--r-- root/root 925 2026-10-04 19:25 ./usr/share/man/man1/snap-aligner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-nkccb9/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Sources [1357 B] Get:5 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ Packages [1436 B] Fetched 3408 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:s390x shared-mime-info t1utils ucf unzip 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 25.1 MB of archives. After this operation, 95.1 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-nkccb9/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [832 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4.1 [325 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.1.1-1 [138 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.29-1 [63.8 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.2.1-1 [260 kB] Get:40 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.2.1-1 [629 kB] Get:41 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.69-2 [37.3 kB] Get:42 http://localhost:3142/debian unstable/main amd64 distro-info-data all 2026.10.12-1 [6372 B] Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b2 [60.7 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.9-8 [130 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.8.1-1 [147 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-4 [23.1 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.9-8 [664 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43+b1 [68.3 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b5 [10.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.010-2 [15.4 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b7 [22.7 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.65-1 [45.4 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2+b2 [122 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.40-1 [115 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.86-1 [99.9 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.72-1 [217 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b7 [36.7 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.51-1 [23.7 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-someutil-perl amd64 1.12-1 [24.7 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.992-1 [49.3 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.80-1 [154 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.46-1 [32.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3+b1 [32.1 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b6 [98.3 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.87-1+b1 [24.1 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libdistro-info-perl all 1.20 [5488 B] Get:98 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b5 [29.5 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:103 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b3 [31.3 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:113 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.05-1 [20.3 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:120 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:121 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.96-2 [335 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:124 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.17-1 [11.2 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.83-1 [186 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:132 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblist-someutils-xs-perl amd64 0.59-1+b1 [35.6 kB] Get:135 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:136 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16-2 [40.4 kB] Get:137 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b2 [36.5 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:140 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:145 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.2-1+b1 [144 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4+b1 [11.3 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b3 [12.6 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b5 [17.6 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b4 [11.4 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b4 [41.9 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.011+ds-1 [108 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.011+ds-1 [111 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:158 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.51-1 [66.2 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1+b1 [27.2 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b5 [24.7 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b5 [8780 B] Get:162 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1+b1 [13.2 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b3 [175 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1+b1 [78.4 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.75-1+b1 [28.8 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b1 [314 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.910.0+ds-1+b1 [48.2 kB] Get:174 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13-2 [72.8 kB] Get:175 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:176 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.5-1 [85.7 kB] Get:177 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:178 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-31 [176 kB] Get:179 http://localhost:3142/debian unstable/main amd64 lintian all 2.143.0 [1038 kB] Preconfiguring packages ... Fetched 25.1 MB in 0s (174 MB/s) Selecting previously unselected package netbase. (Reading database ... 18312 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.5-1_amd64.deb ... 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:s390x. Preparing to unpack .../178-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43+b1) ... Setting up liblz1:amd64 (1.16-2) ... Setting up libberkeleydb-perl:amd64 (0.66-2+b2) ... Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libnpth0t64:amd64 (1.8-4) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b1) ... Setting up libmouse-perl:amd64 (2.6.2-1+b1) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up libdata-messagepack-perl (1.02-3+b1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.51-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4+b1) ... Setting up distro-info-data (2026.10.12-1) ... Setting up libcpanel-json-xs-perl:amd64 (4.80-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.87-1+b1) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:amd64 (1.2.0-4.1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up liblwp-mediatypes-perl (6.05-1) ... Setting up libyaml-libyaml-perl (0.910.0+ds-1+b1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.12.4-2) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up libparams-someutil-perl (1.12-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.011+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:amd64 (0.9.4-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up patchutils (0.4.5-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b4) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.69-2) ... Setting up libvariable-magic-perl (0.65-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libdata-optlist-perl (0.115-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b5) ... Setting up libfile-libmagic-perl (1.23-2+b3) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b3) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libsub-name-perl:amd64 (0.28-1+b3) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1+b4) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2+b2) ... Setting up procps (2:4.0.7-1) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b7) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libstemmer0d:amd64 (3.1.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libterm-readkey-perl (2.38-2+b5) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.6.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b5) ... Setting up libperlio-gzip-perl (0.20-1+b5) ... Setting up readline-common (8.3-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.011+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b2) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up liburi-perl (5.40-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libsub-exporter-perl (0.992-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b5) ... Setting up libnet-ssleay-perl:amd64 (1.96-2) ... Setting up libksba8:amd64 (1.8.1-1) ... Setting up libhttp-date-perl (6.08-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libdistro-info-perl (1.20) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b1) ... Setting up libexception-class-perl (1.46-1) ... Setting up libdevel-callchecker-perl (0.010-2) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.51-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhtml-parser-perl:amd64 (3.86-1) ... Setting up gpgconf (2.4.9-8) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up gpg (2.4.9-8) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.29-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b7) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.2.1-1) ... Setting up liblist-someutils-xs-perl:amd64 (0.59-1+b1) ... Setting up appstream (1.2.1-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.17-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.143.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Wed, 28 Oct 2026 07:19:51 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 28 Oct 2026 07:19:51 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 28 Oct 2026 07:19:52 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 82 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 12 Job: snap-aligner_2.0.5+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: snap-aligner Package-Time: 107 Source-Version: 2.0.5+dfsg-2 Space: n/a Status: successful Version: 2.0.5+dfsg-2 -------------------------------------------------------------------------------- Finished at 2026-10-28T07:19:36Z Build needed 00:01:47, no disk space