sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snp-sites 2.4.1-1 (arm64) Sat, 16 Mar 2019 11:17:29 +0000 | +==============================================================================+ Package: snp-sites Version: 2.4.1-1 Source Version: 2.4.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-d9a35a0f-0c43-4a48-b061-aa5ee6a67663' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-16-0809.41.pdiff [33 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-16-0809.41.pdiff [33 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-16-0809.41.pdiff [907 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-16-0809.41.pdiff [907 B] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8102 kB] Fetched 8400 kB in 2s (4941 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snp-sites' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snp-sites.git Please use: git clone https://salsa.debian.org/med-team/snp-sites.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 15.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.4.1-1 (dsc) [2266 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.4.1-1 (tar) [15.6 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.4.1-1 (diff) [7908 B] Fetched 15.6 MB in 0s (70.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snp-sites-bwV8pv/snp-sites-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-bwV8pv' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CKpYMW/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-CKpYMW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CKpYMW/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-CKpYMW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CKpYMW/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-CKpYMW/apt_archive ./ Packages [449 B] Fetched 1768 B in 0s (156 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CKpYMW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.31.1-15 [2907 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-2cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6251 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-7cross1 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-2cross1 [34.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-2cross1 [66.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-2cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-2cross1 [8620 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-2cross1 [325 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-2cross1 [321 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-2cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-2cross1 [255 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-2cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-2cross1 [833 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6681 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.20-1cross1 [1209 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-7cross1 [2322 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-2cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6821 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (68.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11931 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-15) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-arm64-cross (2.28-7cross1) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libitm1-arm64-cross (8.3.0-2cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-2cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-2cross1) ... Setting up libgomp1-arm64-cross (8.3.0-2cross1) ... Setting up libc6-dev-arm64-cross (2.28-7cross1) ... Setting up libstdc++6-arm64-cross (8.3.0-2cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-2cross1) ... Setting up libubsan1-arm64-cross (8.3.0-2cross1) ... Setting up libtsan0-arm64-cross (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-2cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-CKpYMW/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-CKpYMW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CKpYMW/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CKpYMW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CKpYMW/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-CKpYMW/apt_archive ./ Packages [569 B] Fetched 2016 B in 0s (119 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CKpYMW/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15211 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/<>/resolver-CKpYMW/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-snp-sites-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-CKpYMW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CKpYMW/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CKpYMW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CKpYMW/apt_archive ./ Sources [666 B] Get:5 copy:/<>/resolver-CKpYMW/apt_archive ./ Packages [748 B] Fetched 2377 B in 0s (0 B/s) Reading package lists... Reading package lists... Install snp-sites build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils ca-certificates check:arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libreadline7 libruby2.5 libsigsegv2 libssl1.1 libstdc++-8-dev:arm64 libstdc++6:arm64 libsubunit-dev:arm64 libsubunit0:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libyaml-0-2 linux-libc-dev:arm64 m4 man-db openssl pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl readline-doc ri ruby-dev bundler Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils ca-certificates check:arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libreadline7 libruby2.5 libsigsegv2 libssl1.1 libstdc++-8-dev:arm64 libstdc++6:arm64 libsubunit-dev:arm64 libsubunit0:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libyaml-0-2 linux-libc-dev:arm64 m4 man-db openssl pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-snp-sites-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 27.1 MB of archives. After this operation, 119 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CKpYMW/apt_archive ./ sbuild-build-depends-snp-sites-dummy 0.invalid.0 [912 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1b-1 [839 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 ca-certificates all 20190110 [157 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 rubygems-integration all 1.11 [4994 B] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 rake all 12.3.1-3 [66.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libruby2.5 amd64 2.5.3-4 [3431 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 ruby2.5 amd64 2.5.3-4 [393 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-asciidoctor all 1.5.8-1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 asciidoctor all 1.5.8-1 [75.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-2 [190 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-2 [34.3 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-8 [2522 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libsubunit0 arm64 1.3.0-1 [9040 B] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libsubunit-dev arm64 1.3.0-1 [9964 B] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 check arm64 0.12.0-0.1 [112 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-2 [362 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-2 [328 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-2 [8812 B] Get:58 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.28-2 [1137 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-8 [2325 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-2 [67.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-2 [24.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-2 [118 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-2 [262 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-2 [111 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-2 [828 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-2 [1503 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1 [89.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.1 MB in 0s (70.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15211 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../08-libssl1.1_1.1.1b-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1b-1) ... Selecting previously unselected package openssl. Preparing to unpack .../09-openssl_1.1.1b-1_amd64.deb ... Unpacking openssl (1.1.1b-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../10-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../11-rubygems-integration_1.11_all.deb ... Unpacking rubygems-integration (1.11) ... Selecting previously unselected package rake. Preparing to unpack .../12-rake_12.3.1-3_all.deb ... Unpacking rake (12.3.1-3) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../13-ruby-did-you-mean_1.2.1-1_all.deb ... Unpacking ruby-did-you-mean (1.2.1-1) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../14-ruby-minitest_5.11.3-1_all.deb ... Unpacking ruby-minitest (5.11.3-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../15-ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../16-ruby-power-assert_1.1.1-1_all.deb ... Unpacking ruby-power-assert (1.1.1-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../17-ruby-test-unit_3.2.8-1_all.deb ... Unpacking ruby-test-unit (3.2.8-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../18-ruby-xmlrpc_0.3.0-2_all.deb ... Unpacking ruby-xmlrpc (0.3.0-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../19-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../20-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../21-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libruby2.5:amd64. Preparing to unpack .../22-libruby2.5_2.5.3-4_amd64.deb ... Unpacking libruby2.5:amd64 (2.5.3-4) ... Selecting previously unselected package ruby2.5. Preparing to unpack .../23-ruby2.5_2.5.3-4_amd64.deb ... Unpacking ruby2.5 (2.5.3-4) ... Selecting previously unselected package ruby. Preparing to unpack .../24-ruby_1%3a2.5.1_amd64.deb ... Unpacking ruby (1:2.5.1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../25-ruby-asciidoctor_1.5.8-1_all.deb ... Unpacking ruby-asciidoctor (1.5.8-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../26-asciidoctor_1.5.8-1_all.deb ... Unpacking asciidoctor (1.5.8-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../27-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../28-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../29-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../30-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../31-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... 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Unpacking sbuild-build-depends-snp-sites-dummy:arm64 (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1b-1) ... Setting up linux-libc-dev:arm64 (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up ruby-minitest (5.11.3-1) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.84) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up openssl (1.1.1b-1) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up readline-common (7.0-5) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up rubygems-integration (1.11) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up rake (12.3.1-3) ... Setting up libc6:arm64 (2.28-8) ... Setting up libc6-dev:arm64 (2.28-8) ... Setting up libitm1:arm64 (8.3.0-2) ... Setting up libgcc1:arm64 (1:8.3.0-2) ... Setting up libruby2.5:amd64 (2.5.3-4) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1) ... Setting up libgomp1:arm64 (8.3.0-2) ... Setting up libsubunit0:arm64 (1.3.0-1) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:arm64 (8.3.0-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libstdc++6:arm64 (8.3.0-2) ... Setting up liblsan0:arm64 (8.3.0-2) ... Setting up libtsan0:arm64 (8.3.0-2) ... Setting up ruby2.5 (2.5.3-4) ... Setting up libsubunit-dev:arm64 (1.3.0-1) ... Setting up debhelper (12.1.1) ... Setting up libasan5:arm64 (8.3.0-2) ... Setting up ruby (1:2.5.1) ... Setting up ruby-asciidoctor (1.5.8-1) ... Setting up check:arm64 (0.12.0-0.1) ... Setting up asciidoctor (1.5.8-1) ... Setting up libubsan1:arm64 (8.3.0-2) ... Setting up libgcc-8-dev:arm64 (8.3.0-2) ... Setting up libstdc++-8-dev:arm64 (8.3.0-2) ... Setting up sbuild-build-depends-snp-sites-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 asciidoctor_1.5.8-1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-aarch64-linux-gnu_2.31.1-15 binutils-common_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 ca-certificates_20190110 check_0.12.0-0.1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-aarch64-linux-gnu_8.3.0-2cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-arm64_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-aarch64-linux-gnu_8.3.0-2cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-aarch64-linux-gnu_8.3.0-2cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-2cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-arm64-cross_8.3.0-2cross1 libatomic1_8.3.0-2 libatomic1-arm64-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-arm64-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-arm64-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-2 libgcc-8-dev-arm64-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-arm64-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-3 libgomp1_8.3.0-2 libgomp1-arm64-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libitm1-arm64-cross_8.3.0-2cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblsan0-arm64-cross_8.3.0-2cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libquadmath0_8.3.0-2 libreadline7_7.0-5 libruby2.5_2.5.3-4 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 libsubunit-dev_1.3.0-1 libsubunit0_1.3.0-1 libsystemd0_241-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-2 libtsan0-arm64-cross_8.3.0-2cross1 libubsan1_8.3.0-2 libubsan1-arm64-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-0-2_0.2.1-1 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-arm64-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 openssl_1.1.1b-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.8-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.3-4 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 6 15:56:28 2018 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.4.1-1.dsc dpkg-source: info: extracting snp-sites in /<> dpkg-source: info: unpacking snp-sites_2.4.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.4.1-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-d9a35a0f-0c43-4a48-b061-aa5ee6a67663 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-pkg-config... /usr/bin/aarch64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking whether make supports the include directive... yes (GNU style) checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for aarch64-linux-gnu-gcc... (cached) aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether aarch64-linux-gnu-gcc accepts -g... (cached) yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of aarch64-linux-gnu-gcc... (cached) none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/aarch64-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: aarch64-linux-gnu-gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: aarch64-linux-gnu-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: aarch64-linux-gnu-ranlib /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libm.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libsnp-sites1/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 was not linked against libm.so.6 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libsnp-sites1-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snp-sites' in '../snp-sites_2.4.1-1_arm64.deb'. dpkg-deb: building package 'snp-sites-dbgsym' in '../snp-sites-dbgsym_2.4.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.4.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dbgsym' in '../libsnp-sites1-dbgsym_2.4.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.4.1-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snp-sites_2.4.1-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-16T11:18:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-CKpYMW/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-snp-sites-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-CKpYMW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CKpYMW/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CKpYMW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CKpYMW/apt_archive ./ Sources [789 B] Get:5 copy:/<>/resolver-CKpYMW/apt_archive ./ Packages [861 B] Fetched 2613 B in 0s (146 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libdata-dump-perl libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 5983 kB of archives. After this operation, 16.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CKpYMW/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.10.0 [1195 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5983 kB in 0s (34.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 19762 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../01-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../02-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../03-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../04-libsqlite3-0_3.27.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-1) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.13-1_amd64.deb ... Unpacking gpg (2.2.13-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../06-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../07-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../08-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../09-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../10-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../11-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../12-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../13-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../14-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../15-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../16-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../17-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../18-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../19-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../20-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../21-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../22-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../23-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../24-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../25-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../26-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../27-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../28-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../29-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../30-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../31-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../32-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../33-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../34-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../35-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../36-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../37-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../38-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../39-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../40-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../41-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../42-lintian_2.10.0_all.deb ... Unpacking lintian (2.10.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:arm64. Preparing to unpack .../43-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-1) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up gpgconf (2.2.13-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up liburi-perl (1.76-1) ... Setting up gpg (2.2.13-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.10.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.4.1-1_arm64.changes: -------------------------------- Format: 1.8 Date: Sat, 06 Oct 2018 17:54:44 +0200 Source: snp-sites Binary: libsnp-sites1 libsnp-sites1-dbgsym libsnp-sites1-dev snp-sites snp-sites-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.4.1-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 553586bf400550cc488860788101bd45a65d6145 21064 libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 052f8da94f1a116596d66da5bbef2980f4e71a37 14776 libsnp-sites1-dev_2.4.1-1_arm64.deb 616ca9068ee8289b7ca97edd8c9a6319404496a6 11224 libsnp-sites1_2.4.1-1_arm64.deb 68a71f8d1bc5968ccf172779978e3fa7454c3b5f 6564 snp-sites-dbgsym_2.4.1-1_arm64.deb 51054f3b4634884b945b4bcd3aaddb76ac21b316 6320 snp-sites_2.4.1-1_arm64.buildinfo e342f720ebe93e18f4ba85e9ef1dc0b3d91e234f 11292 snp-sites_2.4.1-1_arm64.deb Checksums-Sha256: 9436667358c6ce87b0379468cdb39a2f9924f9758983be6f86aa7104c0e888de 21064 libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 20fa85e855bbf4516fa5713b4ccdd533d22466ad7e10a2298400f33c579fee15 14776 libsnp-sites1-dev_2.4.1-1_arm64.deb f67bbadcee0e434481ee170cfa61ef9fb60998d9044148e45dcef275055ae12d 11224 libsnp-sites1_2.4.1-1_arm64.deb 58501f64f43bcff3b74e8cf30c638adf6b640773768431657d9568da80527a74 6564 snp-sites-dbgsym_2.4.1-1_arm64.deb 708feb61f31e5ef2019233b7458c2c89b874afe66e137c30a4b1ad09a01e0f93 6320 snp-sites_2.4.1-1_arm64.buildinfo de33a9957051a83b18005b598e0ab44017b40e8bc0b8e35ed5b76a40b4219f00 11292 snp-sites_2.4.1-1_arm64.deb Files: cf45a01c3611eefdc79a97f693494853 21064 debug optional libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 587a850a12c51f6a7cfdbe2748a4c34a 14776 libdevel optional libsnp-sites1-dev_2.4.1-1_arm64.deb c32b1d72ba2eec582235a6e1f2a292f1 11224 libs optional libsnp-sites1_2.4.1-1_arm64.deb f55ed13fef09ceebdc8168054673478a 6564 debug optional snp-sites-dbgsym_2.4.1-1_arm64.deb 675a140d7aba4bd4a480b60316bb8bf7 6320 science optional snp-sites_2.4.1-1_arm64.buildinfo a3d8ced53923b4f8bb672d0628b09056 11292 science optional snp-sites_2.4.1-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: arm64 Version: 2.4.1-1 Checksums-Md5: cf45a01c3611eefdc79a97f693494853 21064 libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 587a850a12c51f6a7cfdbe2748a4c34a 14776 libsnp-sites1-dev_2.4.1-1_arm64.deb c32b1d72ba2eec582235a6e1f2a292f1 11224 libsnp-sites1_2.4.1-1_arm64.deb f55ed13fef09ceebdc8168054673478a 6564 snp-sites-dbgsym_2.4.1-1_arm64.deb a3d8ced53923b4f8bb672d0628b09056 11292 snp-sites_2.4.1-1_arm64.deb Checksums-Sha1: 553586bf400550cc488860788101bd45a65d6145 21064 libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 052f8da94f1a116596d66da5bbef2980f4e71a37 14776 libsnp-sites1-dev_2.4.1-1_arm64.deb 616ca9068ee8289b7ca97edd8c9a6319404496a6 11224 libsnp-sites1_2.4.1-1_arm64.deb 68a71f8d1bc5968ccf172779978e3fa7454c3b5f 6564 snp-sites-dbgsym_2.4.1-1_arm64.deb e342f720ebe93e18f4ba85e9ef1dc0b3d91e234f 11292 snp-sites_2.4.1-1_arm64.deb Checksums-Sha256: 9436667358c6ce87b0379468cdb39a2f9924f9758983be6f86aa7104c0e888de 21064 libsnp-sites1-dbgsym_2.4.1-1_arm64.deb 20fa85e855bbf4516fa5713b4ccdd533d22466ad7e10a2298400f33c579fee15 14776 libsnp-sites1-dev_2.4.1-1_arm64.deb f67bbadcee0e434481ee170cfa61ef9fb60998d9044148e45dcef275055ae12d 11224 libsnp-sites1_2.4.1-1_arm64.deb 58501f64f43bcff3b74e8cf30c638adf6b640773768431657d9568da80527a74 6564 snp-sites-dbgsym_2.4.1-1_arm64.deb de33a9957051a83b18005b598e0ab44017b40e8bc0b8e35ed5b76a40b4219f00 11292 snp-sites_2.4.1-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 16 Mar 2019 11:18:24 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0), asciidoctor (= 1.5.8-1), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-15), binutils-common (= 2.31.1-15), binutils-x86-64-linux-gnu (= 2.31.1-15), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), ca-certificates (= 20190110), check (= 0.12.0-0.1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-2), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2018.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-2), dpkg (= 1.19.5), dpkg-dev (= 1.19.5), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-2), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-2), gcc-8-base (= 8.3.0-2), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-2), libatomic1 (= 8.3.0-2), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-15), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-2), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.248), libdpkg-perl (= 1.19.5), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-2), libgcc1 (= 1:8.3.0-2), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.6-3), libgomp1 (= 8.3.0-2), libgpg-error0 (= 1.35-1), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-2), liblsan0 (= 8.3.0-2), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-2), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-2), libreadline7 (= 7.0-5), libruby2.5 (= 2.5.3-4), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libssl1.1 (= 1.1.1b-1), libstdc++-8-dev (= 8.3.0-2), libstdc++6 (= 8.3.0-2), libsubunit-dev (= 1.3.0-1), libsubunit0 (= 1.3.0-1), libsystemd0 (= 241-2), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-2), libubsan1 (= 8.3.0-2), libuchardet0 (= 0.0.6-3), libudev1 (= 241-2), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), libyaml-0-2 (= 0.2.1-1), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), openssl (= 1.1.1b-1), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), pkg-config (= 0.29-6), po-debconf (= 1.0.21), rake (= 12.3.1-3), readline-common (= 7.0-5), ruby (= 1:2.5.1), ruby-asciidoctor (= 1.5.8-1), ruby-did-you-mean (= 1.2.1-1), ruby-minitest (= 5.11.3-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.1-1), ruby-test-unit (= 3.2.8-1), ruby-xmlrpc (= 0.3.0-2), ruby2.5 (= 2.5.3-4), rubygems-integration (= 1.11), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1538841284" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dbgsym_2.4.1-1_arm64.deb -------------------------------------- new Debian package, version 2.0. size 21064 bytes: control archive=540 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libsnp-sites1-dbgsym Source: snp-sites Version: 2.4.1-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 37 Depends: libsnp-sites1 (= 2.4.1-1) Section: debug Priority: optional Description: debug symbols for libsnp-sites1 Build-Ids: ee3bea8254edc73ecfadc752a0524581eb542cde drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/.build-id/ee/ -rw-r--r-- root/root 26632 2018-10-06 15:54 ./usr/lib/debug/.build-id/ee/3bea8254edc73ecfadc752a0524581eb542cde.debug drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dbgsym -> libsnp-sites1 libsnp-sites1-dev_2.4.1-1_arm64.deb ----------------------------------- new Debian package, version 2.0. size 14776 bytes: control archive=1152 bytes. 954 bytes, 24 lines control 738 bytes, 10 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 65 Depends: libsnp-sites1 (= 2.4.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/snp-sites/ -rw-r--r-- root/root 1365 2018-10-06 15:54 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2018-10-06 15:54 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2018-10-06 15:54 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2018-10-06 15:54 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2050 2018-10-06 15:54 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2018-10-06 15:54 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 29396 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.a lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/README.Debian -rw-r--r-- root/root 996 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.4.1-1_arm64.deb ------------------------------- new Debian package, version 2.0. size 11224 bytes: control archive=948 bytes. 733 bytes, 19 lines control 236 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 41 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 26392 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 996 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/copyright snp-sites-dbgsym_2.4.1-1_arm64.deb ---------------------------------- new Debian package, version 2.0. size 6564 bytes: control archive=532 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: snp-sites-dbgsym Source: snp-sites Version: 2.4.1-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 22 Depends: snp-sites (= 2.4.1-1) Section: debug Priority: optional Description: debug symbols for snp-sites Build-Ids: a4054092d221f196b0401fb55c0627cd4d14f17a drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 11304 2018-10-06 15:54 ./usr/lib/debug/.build-id/a4/054092d221f196b0401fb55c0627cd4d14f17a.debug drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites-dbgsym -> snp-sites snp-sites_2.4.1-1_arm64.deb --------------------------- new Debian package, version 2.0. size 11292 bytes: control archive=1164 bytes. 1160 bytes, 24 lines control 409 bytes, 6 lines md5sums Package: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.17), libsnp-sites1, zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/bin/ -rwxr-xr-x root/root 14264 2018-10-06 15:54 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2018-10-06 15:54 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2572 2018-10-04 10:37 ./usr/share/doc/snp-sites/README.md.gz -rw-r--r-- root/root 996 2018-10-06 15:54 ./usr/share/doc/snp-sites/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/man1/ -rw-r--r-- root/root 1395 2018-10-06 15:54 ./usr/share/man/man1/snp-sites.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 21360 Build-Time: 22 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 24 Job: snp-sites_2.4.1-1 Lintian: pass Machine Architecture: amd64 Package: snp-sites Package-Time: 56 Source-Version: 2.4.1-1 Space: 21360 Status: successful Version: 2.4.1-1 -------------------------------------------------------------------------------- Finished at 2019-03-16T11:18:25Z Build needed 00:00:56, 21360k disk space