sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snp-sites 2.5.1-1 (arm64) Tue, 21 Jul 2020 00:30:09 +0000 | +==============================================================================+ Package: snp-sites Version: 2.5.1-1 Source Version: 2.5.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-da9d0328-6342-4cd7-9542-357e6c9a3d27' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-vgYZOa/resolver-DffhkZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-20-0811.56.pdiff [5745 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-20-1402.45.pdiff [12.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-20-1402.45.pdiff [12.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-20-0811.56.pdiff [4508 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-20-1402.45.pdiff [12.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-20-1402.45.pdiff [12.7 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8169 kB] Fetched 8406 kB in 2s (5126 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snp-sites' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snp-sites.git Please use: git clone https://salsa.debian.org/med-team/snp-sites.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 15.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (dsc) [2266 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (tar) [15.6 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (diff) [7968 B] Fetched 15.6 MB in 0s (74.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snp-sites-vgYZOa/snp-sites-2.5.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-vgYZOa' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [435 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1914 B in 0s (73.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential ca-certificates check:arm64 cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libperl5.30 libpipeline1 libreadline8 libruby2.7 libsigsegv2 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsubunit-dev:arm64 libsubunit0:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-0-2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db openssl perl perl-modules-5.30 pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 gnupg git bzr libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl readline-doc ri ruby-dev bundler Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:arm64 libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential ca-certificates check:arm64 cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libperl5.30 libpipeline1 libreadline8 libruby2.7 libsigsegv2 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsubunit-dev:arm64 libsubunit0:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-0-2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db openssl perl perl-modules-5.30 pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 97.4 MB of archives. After this operation, 407 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.35.2-7 [139 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.1.0-6 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-15 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1g-1 [846 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 ca-certificates all 20200601 [158 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 rubygems-integration all 1.17.2 [6384 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 rake all 13.0.1-4 [84.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-minitest all 5.13.0-1 [57.3 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-power-assert all 1.1.7-1 [11.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-test-unit all 3.3.5-1 [85.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libruby2.7 amd64 2.7.1-3 [4104 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ruby2.7 amd64 2.7.1-3 [670 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 ruby amd64 1:2.7+1 [11.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-asciidoctor all 2.0.10-2 [201 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 asciidoctor all 2.0.10-2 [77.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.34.90.20200706-1 [2806 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-1 [2395 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-15 [1701 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-15 [10.7 MB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:52 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.1.0-6 [34.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.16-1 [90.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-1 [2488 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main arm64 libsubunit0 arm64 1.3.0-6 [9488 B] Get:56 http://debian.oregonstate.edu/debian unstable/main arm64 libsubunit-dev arm64 1.3.0-6 [10.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main arm64 check arm64 0.12.0-0.2 [112 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.3.0-13cross1 [197 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [6548 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-1cross2 [1260 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10.1.0-3cross1 [34.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10.1.0-3cross1 [89.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10.1.0-3cross1 [23.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10.1.0-3cross1 [9252 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.3.0-13cross1 [347 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10.1.0-3cross1 [125 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10.1.0-3cross1 [285 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10.1.0-3cross1 [411 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10.1.0-3cross1 [122 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.3.0-13cross1 [891 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [6934 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.7.6-1cross2 [1208 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-1cross2 [2067 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.3.0-13cross1 [1640 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [7134 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.93 [17.7 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-15 [354 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.1.0-6 [9452 B] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.7.6-1 [1107 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.16-1 [111 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-1 [2078 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.1.0-6 [93.2 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.1.0-6 [23.8 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.1.0-6 [126 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.1.0-6 [293 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.1.0-6 [450 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.1.0-6 [123 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-15 [886 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-15 [1661 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.4 MB in 1s (105 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10430 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.35.2-7_amd64.deb ... Unpacking bsdextrautils (2.35.2-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Preparing to unpack .../128-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.35.2-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-3) ... Setting up ruby-power-assert (1.1.7-1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.3.0-13cross1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:arm64 (5.7.6-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up binutils-aarch64-linux-gnu (2.34.90.20200706-1) ... Setting up cpp-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up file (1:5.38-5) ... Setting up ruby-minitest (5.13.0-1) ... Setting up gcc-10-base:arm64 (10.1.0-6) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up ruby-test-unit (3.3.5-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.31-1cross2) ... Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.93) ... Setting up gcc-9-cross-base (9.3.0-13cross1) ... Setting up gcc-10-cross-base (10.1.0-3cross1) ... Setting up linux-libc-dev-arm64-cross (5.7.6-1cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-1) ... Setting up openssl (1.1.1g-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-4) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.3.0-15) ... Setting up libgcc-s1-arm64-cross (10.1.0-3cross1) ... Setting up libatomic1-arm64-cross (10.1.0-3cross1) ... Setting up liblsan0-arm64-cross (10.1.0-3cross1) ... Setting up libgomp1-arm64-cross (10.1.0-3cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-15) ... Setting up libtool (2.4.6-14) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtsan0-arm64-cross (10.1.0-3cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.31-1cross2) ... Setting up libasan5-arm64-cross (9.3.0-13cross1) ... Setting up libstdc++6-arm64-cross (10.1.0-3cross1) ... Setting up ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up perl (5.30.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10.1.0-3cross1) ... Setting up ucf (3.0043) ... Setting up g++-9 (9.3.0-15) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10.1.0-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up rubygems-integration (1.17.2) ... Setting up libgcc-9-dev-arm64-cross (9.3.0-13cross1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up pkg-config (0.29.2-1) ... Setting up build-essential (12.8) ... Setting up libstdc++-9-dev-arm64-cross (9.3.0-13cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.16-1) ... Setting up libgcc-s1:arm64 (10.1.0-6) ... Setting up dh-autoreconf (19) ... Setting up rake (13.0.1-4) ... Setting up libc6:arm64 (2.31-1) ... Setting up libcrypt-dev:arm64 (1:4.4.16-1) ... Setting up libc6-dev:arm64 (2.31-1) ... Setting up libstdc++6:arm64 (10.1.0-6) ... Setting up liblsan0:arm64 (10.1.0-6) ... Setting up libitm1:arm64 (10.1.0-6) ... Setting up libtsan0:arm64 (10.1.0-6) ... Setting up debhelper (13.2) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-2) ... Setting up libruby2.7:amd64 (2.7.1-3) ... Setting up libgomp1:arm64 (10.1.0-6) ... Setting up libsubunit0:arm64 (1.3.0-6) ... Setting up libasan5:arm64 (9.3.0-15) ... Setting up libatomic1:arm64 (10.1.0-6) ... Setting up libubsan1:arm64 (10.1.0-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libsubunit-dev:arm64 (1.3.0-6) ... Setting up ruby2.7 (2.7.1-3) ... Setting up libgcc-9-dev:arm64 (9.3.0-15) ... Setting up ruby (1:2.7+1) ... Setting up ruby-asciidoctor (2.0.10-2) ... Setting up check:arm64 (0.12.0-0.2) ... Setting up asciidoctor (2.0.10-2) ... Setting up libstdc++-9-dev:arm64 (9.3.0-15) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.31-1) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.34.90.20200706-1 dpkg-dev_1.20.5 g++-9_9.3.0-15 gcc-9_9.3.0-15 libc6-dev_2.31-1 libstdc++-9-dev_9.3.0-15 libstdc++-9-dev-arm64-cross_9.3.0-13cross1 libstdc++6_10.1.0-6 libstdc++6-arm64-cross_10.1.0-3cross1 linux-libc-dev_5.7.6-1 Package versions: adduser_3.118 apt_2.1.7 asciidoctor_2.0.10-2 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34.90.20200706-1 binutils-aarch64-linux-gnu_2.34.90.20200706-1 binutils-common_2.34.90.20200706-1 binutils-x86-64-linux-gnu_2.34.90.20200706-1 bsdextrautils_2.35.2-7 bsdutils_1:2.35.2-7 build-essential_12.8 bzip2_1.0.8-3 ca-certificates_20200601 check_0.12.0-0.2 coreutils_8.32-2 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-15 cpp-9-aarch64-linux-gnu_9.3.0-13cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3.1 crossbuild-essential-arm64_12.8 d-shlibs_0.93 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-7 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-15 g++-9-aarch64-linux-gnu_9.3.0-13cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-6 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-15 gcc-9-aarch64-linux-gnu_9.3.0-13cross1 gcc-9-aarch64-linux-gnu-base_9.3.0-13cross1 gcc-9-base_9.3.0-15 gcc-9-cross-base_9.3.0-13cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.7 libarchive-zip-perl_1.68-1 libasan5_9.3.0-15 libasan5-arm64-cross_9.3.0-13cross1 libatomic1_10.1.0-6 libatomic1-arm64-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34.90.20200706-1 libblkid1_2.35.2-7 libbz2-1.0_1.0.8-3 libc-bin_2.31-1 libc-dev-bin_2.31-1 libc6_2.31-1 libc6-arm64-cross_2.31-1cross2 libc6-dev_2.31-1 libc6-dev-arm64-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcc1-0_10.1.0-6 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34.90.20200706-1 libctf0_2.34.90.20200706-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-7 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-15 libgcc-9-dev-arm64-cross_9.3.0-13cross1 libgcc-s1_10.1.0-6 libgcc-s1-arm64-cross_10.1.0-3cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6 libgomp1-arm64-cross_10.1.0-3cross1 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-6 libitm1-arm64-cross_10.1.0-3cross1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-6 liblsan0-arm64-cross_10.1.0-3cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-7 libmpc3_1.1.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libquadmath0_10.1.0-6 libreadline8_8.0-4 libruby2.7_2.7.1-3 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-7 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-15 libstdc++-9-dev-arm64-cross_9.3.0-13cross1 libstdc++6_10.1.0-6 libstdc++6-arm64-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsubunit-dev_1.3.0-6 libsubunit0_1.3.0-6 libsystemd0_245.6-3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-6 libtsan0-arm64-cross_10.1.0-3cross1 libubsan1_10.1.0-6 libubsan1-arm64-cross_10.1.0-3cross1 libuchardet0_0.0.7-1 libudev1_245.6-3 libunistring2_0.9.10-4 libuuid1_2.35.2-7 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-0-2_0.2.2-1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-3 linux-libc-dev_5.7.6-1 linux-libc-dev-arm64-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-7 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 pkg-config_0.29.2-1 po-debconf_1.0.21 rake_13.0.1-4 readline-common_8.0-4 ruby_1:2.7+1 ruby-asciidoctor_2.0.10-2 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-test-unit_3.3.5-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.1-3 rubygems-integration_1.17.2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.35.2-7 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snp-sites Binary: snp-sites, libsnp-sites1, libsnp-sites1-dev Architecture: any Version: 2.5.1-1 Maintainer: Debian Med Packaging Team Uploaders: Jorge Soares , Andreas Tille , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/snp-sites Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/snp-sites Vcs-Git: https://salsa.debian.org/med-team/snp-sites.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, zlib1g, zlib1g-dev Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Package-List: libsnp-sites1 deb libs optional arch=any libsnp-sites1-dev deb libdevel optional arch=any snp-sites deb science optional arch=any Checksums-Sha1: 225ae5918875829a3d9d7a08daf383195d4edbe4 15577807 snp-sites_2.5.1.orig.tar.gz 1d9b6975cf394db4f260021435ba7883e2c9b2a8 7968 snp-sites_2.5.1-1.debian.tar.xz Checksums-Sha256: 913f79302e5d3127aea382756abc9ffeb05e26ce00022f43a6ea16a55cdd7a7e 15577807 snp-sites_2.5.1.orig.tar.gz 0f5b2e6dcddea62310aea84af8db0c5fb3c6b0984f3a1b8376555de10d2549b9 7968 snp-sites_2.5.1-1.debian.tar.xz Files: a4183dadd8f8d56398654c943e4f1811 15577807 snp-sites_2.5.1.orig.tar.gz 3279cfd988b49767ca39b93dd15db4af 7968 snp-sites_2.5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAl2wh3EACgkQ6NN64vCf SHK8gQ/9ELPKIPTDJ8C0lAaPGb1/ruMceSxZHKDDEgxtdWFfA09H+N6hCqTqlOhT 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verify signature on ./snp-sites_2.5.1-1.dsc dpkg-source: info: extracting snp-sites in /<> dpkg-source: info: unpacking snp-sites_2.5.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.5.1-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-da9d0328-6342-4cd7-9542-357e6c9a3d27 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-pkg-config... /usr/bin/aarch64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for check >= 0.8.2... yes checking whether make supports the include directive... yes (GNU style) checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for aarch64-linux-gnu-gcc... (cached) aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether aarch64-linux-gnu-gcc accepts -g... (cached) yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of aarch64-linux-gnu-gcc... (cached) none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/aarch64-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: aarch64-linux-gnu-gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: aarch64-linux-gnu-ar cr .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o libtool: link: aarch64-linux-gnu-ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: aarch64-linux-gnu-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: aarch64-linux-gnu-ranlib /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libsnp-sites1-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snp-sites' in '../snp-sites_2.5.1-1_arm64.deb'. dpkg-deb: building package 'snp-sites-dbgsym' in '../snp-sites-dbgsym_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dbgsym' in '../libsnp-sites1-dbgsym_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.5.1-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snp-sites_2.5.1-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-07-21T00:31:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.5.1-1_arm64.changes: -------------------------------- Format: 1.8 Date: Wed, 23 Oct 2019 18:43:51 +0200 Source: snp-sites Binary: libsnp-sites1 libsnp-sites1-dbgsym libsnp-sites1-dev snp-sites snp-sites-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.5.1-1) unstable; urgency=medium . [ Andreas Tille ] * Fix EDAM syntax. . [ Steffen Moeller ] * Perform yamllint. . [ Sascha Steinbiss ] * New upstream release. 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libsnp-sites1-dev snp-sites snp-sites-dbgsym Architecture: arm64 Version: 2.5.1-1 Checksums-Md5: c05ed188c7ec5194d9637d0d0cad2d5b 22192 libsnp-sites1-dbgsym_2.5.1-1_arm64.deb cd1d6e3294f39603e3f2d193da666e0a 17836 libsnp-sites1-dev_2.5.1-1_arm64.deb 07ca2bbad7d68b004b0f1c0b08d6a0ac 14096 libsnp-sites1_2.5.1-1_arm64.deb f2a8befed3b788f2820271cf690f9b7e 6800 snp-sites-dbgsym_2.5.1-1_arm64.deb 98dc0f4f2a7af9a7c7cec3c3924efeee 14168 snp-sites_2.5.1-1_arm64.deb Checksums-Sha1: b22eafb12566732daf3ae0edeefc0fc93a5cf39a 22192 libsnp-sites1-dbgsym_2.5.1-1_arm64.deb c7f7ca0ccc2213fd368014ea14acd7c81feb8d72 17836 libsnp-sites1-dev_2.5.1-1_arm64.deb 5a772d00dacade45c49fd4dcb1203a45b3906547 14096 libsnp-sites1_2.5.1-1_arm64.deb 741a0aef5cfcb38bb2f540601bb0c1748d8a0e74 6800 snp-sites-dbgsym_2.5.1-1_arm64.deb 8555a2352731e73139afc512280059d662ff590b 14168 snp-sites_2.5.1-1_arm64.deb Checksums-Sha256: bf4811405cdb465f4d0cebf4956b46e470628c5c4999bc37c8b22f7005481048 22192 libsnp-sites1-dbgsym_2.5.1-1_arm64.deb be2da6aa8189716cc6355dc1b4442afb233d9a2234d524044392dd9ff5064464 17836 libsnp-sites1-dev_2.5.1-1_arm64.deb f124811235e20bf326e3fd5fa1054b4177380371d71630e5a884b20207ccb179 14096 libsnp-sites1_2.5.1-1_arm64.deb 525ab02b9d73c459861f7c56ca99d90d61c800cbc7edf29cfb93dd20325baf41 6800 snp-sites-dbgsym_2.5.1-1_arm64.deb 1129fbb29dbcf33bdf61f2e08a1b92cb05b3f284ebed0df8fa6413d55cce4592 14168 snp-sites_2.5.1-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 21 Jul 2020 00:31:06 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.1.7), asciidoctor (= 2.0.10-2), autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34.90.20200706-1), binutils-common (= 2.34.90.20200706-1), binutils-x86-64-linux-gnu (= 2.34.90.20200706-1), bsdextrautils (= 2.35.2-7), bsdutils (= 1:2.35.2-7), build-essential (= 12.8), bzip2 (= 1.0.8-3), ca-certificates (= 20200601), check (= 0.12.0-0.2), coreutils (= 8.32-2), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-15), d-shlibs (= 0.93), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debian-archive-keyring (= 2019.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-15), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-6), gcc-9 (= 9.3.0-15), gcc-9-base (= 9.3.0-15), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.20-1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libapt-pkg6.0 (= 2.1.7), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-15), libatomic1 (= 10.1.0-6), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34.90.20200706-1), libblkid1 (= 2.35.2-7), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.31-1), libc-dev-bin (= 2.31-1), libc6 (= 2.31-1), libc6-dev (= 2.31-1), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.1.0-6), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34.90.20200706-1), libctf0 (= 2.34.90.20200706-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-9-dev (= 9.3.0-15), libgcc-s1 (= 10.1.0-6), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgnutls30 (= 3.6.14-2+b1), libgomp1 (= 10.1.0-6), libgpg-error0 (= 1.38-2), libhogweed6 (= 3.6-2), libicu67 (= 67.1-3), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-6), liblsan0 (= 10.1.0-6), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.2-7), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-6), libreadline8 (= 8.0-4), libruby2.7 (= 2.7.1-3), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-7), libssl1.1 (= 1.1.1g-1), libstdc++-9-dev (= 9.3.0-15), libstdc++6 (= 10.1.0-6), libsub-override-perl (= 0.09-2), libsubunit-dev (= 1.3.0-6), libsubunit0 (= 1.3.0-6), libsystemd0 (= 245.6-3), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-6), libubsan1 (= 10.1.0-6), libuchardet0 (= 0.0.7-1), libudev1 (= 245.6-3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.35.2-7), libxml2 (= 2.9.10+dfsg-5+b1), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.5+dfsg-3), linux-libc-dev (= 5.7.6-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), openssl (= 1.1.1g-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), rake (= 13.0.1-4), readline-common (= 8.0-4), ruby (= 1:2.7+1), ruby-asciidoctor (= 2.0.10-2), ruby-minitest (= 5.13.0-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.7-1), ruby-test-unit (= 3.3.5-1), ruby-xmlrpc (= 0.3.0-2), ruby2.7 (= 2.7.1-3), rubygems-integration (= 1.17.2), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-7), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1571849031" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dbgsym_2.5.1-1_arm64.deb -------------------------------------- new Debian package, version 2.0. size 22192 bytes: control archive=544 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libsnp-sites1-dbgsym Source: snp-sites Version: 2.5.1-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 38 Depends: libsnp-sites1 (= 2.5.1-1) Section: debug Priority: optional Description: debug symbols for libsnp-sites1 Build-Ids: 0a3b3fff5fa6d12b0cc37b32f03af7373ba449bb drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 27760 2019-10-23 16:43 ./usr/lib/debug/.build-id/0a/3b3fff5fa6d12b0cc37b32f03af7373ba449bb.debug drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dbgsym -> libsnp-sites1 libsnp-sites1-dev_2.5.1-1_arm64.deb ----------------------------------- new Debian package, version 2.0. size 17836 bytes: control archive=1176 bytes. 954 bytes, 24 lines control 817 bytes, 11 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.5.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 71 Depends: libsnp-sites1 (= 2.5.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/include/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/include/snp-sites/ -rw-r--r-- root/root 1487 2019-10-23 16:43 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2019-10-23 16:43 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2019-10-23 16:43 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2019-10-23 16:43 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2151 2019-10-23 16:43 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2019-10-23 16:43 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 31570 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/libsnp-sites.a lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/README.Debian -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/libsnp-sites1-dev/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.5.1-1_arm64.deb ------------------------------- new Debian package, version 2.0. size 14096 bytes: control archive=976 bytes. 733 bytes, 19 lines control 311 bytes, 4 lines md5sums 29 bytes, 1 lines shlibs 65 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.5.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 41 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 22296 2019-10-23 16:43 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/libsnp-sites1/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/copyright snp-sites-dbgsym_2.5.1-1_arm64.deb ---------------------------------- new Debian package, version 2.0. size 6800 bytes: control archive=536 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: snp-sites-dbgsym Source: snp-sites Version: 2.5.1-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 22 Depends: snp-sites (= 2.5.1-1) Section: debug Priority: optional Description: debug symbols for snp-sites Build-Ids: aebfdbbb65f5dd4203033a57db5a718e4a086bff drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/ae/ -rw-r--r-- root/root 11552 2019-10-23 16:43 ./usr/lib/debug/.build-id/ae/bfdbbb65f5dd4203033a57db5a718e4a086bff.debug drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/share/doc/snp-sites-dbgsym -> snp-sites snp-sites_2.5.1-1_arm64.deb --------------------------- new Debian package, version 2.0. size 14168 bytes: control archive=1176 bytes. 1139 bytes, 24 lines control 480 bytes, 7 lines md5sums Package: snp-sites Version: 2.5.1-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 37 Depends: libc6 (>= 2.17), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/bin/ -rwxr-xr-x root/root 14264 2019-10-23 16:43 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2019-10-23 16:43 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2697 2019-10-22 10:21 ./usr/share/doc/snp-sites/README.md.gz -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/snp-sites/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/snp-sites/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/man/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1394 2019-10-23 16:43 ./usr/share/man/man1/snp-sites.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [566 B] Get:5 copy:/<>/apt_archive ./ Packages [655 B] Fetched 2184 B in 0s (87.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-messagepack-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-libyaml-perl lintian patchutils t1utils Suggested packages: libxml-parser-perl libdata-dump-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-messagepack-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-libyaml-perl lintian patchutils sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. 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http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.84.0 [1305 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7026 kB in 0s (29.5 MB/s) Selecting previously unselected package diffstat. 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Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.84.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-1) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 21440 Build-Time: 24 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 23 Job: snp-sites_2.5.1-1 Lintian: pass Machine Architecture: amd64 Package: snp-sites Package-Time: 57 Source-Version: 2.5.1-1 Space: 21440 Status: successful Version: 2.5.1-1 -------------------------------------------------------------------------------- Finished at 2020-07-21T00:31:06Z Build needed 00:00:57, 21440k disk space