sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | snp-sites 2.5.1-1 (armel) Sat, 16 Nov 2019 05:08:16 +0000 | +==============================================================================+ Package: snp-sites Version: 2.5.1-1 Source Version: 2.5.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f2a3c602-900e-423c-839e-ec0bb970b204' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-OYxORf/resolver-KR3yQg' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-0817.07.pdiff [6547 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-1420.46.pdiff [7033 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-2014.34.pdiff [15.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-16-0217.19.pdiff [10.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-0817.07.pdiff [23.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-1420.46.pdiff [24.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-2014.34.pdiff [47.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-16-0217.19.pdiff [10.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-16-0217.19.pdiff [14.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-16-0217.19.pdiff [14.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armel Packages [7933 kB] Fetched 8277 kB in 2s (4244 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libcap-ng0 libseccomp2 libselinux1 libsystemd0 libudev1 libzstd1 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 903 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 243-7 [346 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libcap-ng0 amd64 0.7.9-2.1+b1 [14.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libseccomp2 amd64 2.4.2-2 [43.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 2.9-3+b1 [87.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 243-7 [161 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [250 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 903 kB in 0s (16.2 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.29-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'snp-sites' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snp-sites.git Please use: git clone https://salsa.debian.org/med-team/snp-sites.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 15.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (dsc) [2266 B] Get:2 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (tar) [15.6 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main snp-sites 2.5.1-1 (diff) [7968 B] Fetched 15.6 MB in 0s (58.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/snp-sites-OYxORf/snp-sites-2.5.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-OYxORf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1911 B in 0s (99.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils ca-certificates check:armel cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpipeline1 libreadline8 libruby2.5 libsigsegv2 libssl1.1 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsubunit-dev:armel libsubunit0:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-0-2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db openssl pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sensible-utils ucf zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl readline-doc ri ruby-dev bundler Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils ca-certificates check:armel cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpipeline1 libreadline8 libruby2.5 libsigsegv2 libssl1.1 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsubunit-dev:armel libsubunit0:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-0-2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db openssl pkg-config po-debconf rake readline-common ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel zlib1g-dev:armel 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 69.5 MB of archives. After this operation, 270 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-19 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1d-2 [840 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ca-certificates all 20190110 [157 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 rubygems-integration all 1.14 [5344 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 rake all 12.3.3-1 [67.3 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-test-unit all 3.2.9-1 [74.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libruby2.5 amd64 2.5.7-1 [3414 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 ruby2.5 amd64 2.5.7-1 [375 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 ruby amd64 1:2.5.2 [11.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ruby-asciidoctor all 2.0.10-2 [201 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 asciidoctor all 2.0.10-2 [77.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.1-2 [2721 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-19 [38.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-3 [2348 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armel libsubunit0 armel 1.3.0-6 [9276 B] Get:45 http://debian.oregonstate.edu/debian unstable/main armel libsubunit-dev armel 1.3.0-6 [10.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armel check armel 0.12.0-0.1 [109 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-19cross1 [194 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [6812 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-19cross1 [190 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-19cross1 [39.0 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-19cross1 [74.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-19cross1 [8944 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-19cross1 [340 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-19cross1 [377 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-19cross1 [110 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-19cross1 [644 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7157 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-19cross1 [1709 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7390 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b4 [710 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.88 [17.4 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.2-1 [23.6 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.2-1 [14.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-2 [145 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.2-3 [1318 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-19 [347 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-19 [9092 B] Get:102 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.3.9-2 [986 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-3 [2195 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-19 [77.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-19 [415 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-19 [111 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-19 [643 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-19 [1739 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1+b1 [84.7 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-1+b1 [204 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.5 MB in 1s (61.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14998 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_amd64.deb ... Unpacking man-db (2.9.0-1) ... 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Selecting previously unselected package libasan5-armel-cross. Preparing to unpack .../054-libasan5-armel-cross_9.2.1-19cross1_all.deb ... Unpacking libasan5-armel-cross (9.2.1-19cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../055-libstdc++6-armel-cross_9.2.1-19cross1_all.deb ... Unpacking libstdc++6-armel-cross (9.2.1-19cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../056-libubsan1-armel-cross_9.2.1-19cross1_all.deb ... Unpacking libubsan1-armel-cross (9.2.1-19cross1) ... Selecting previously unselected package libgcc-9-dev-armel-cross. Preparing to unpack .../057-libgcc-9-dev-armel-cross_9.2.1-19cross1_all.deb ... Unpacking libgcc-9-dev-armel-cross (9.2.1-19cross1) ... Selecting previously unselected package gcc-9-arm-linux-gnueabi. Preparing to unpack .../058-gcc-9-arm-linux-gnueabi_9.2.1-19cross1_amd64.deb ... Unpacking gcc-9-arm-linux-gnueabi (9.2.1-19cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../059-gcc-arm-linux-gnueabi_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../060-linux-libc-dev-armel-cross_5.2.9-2cross7_all.deb ... Unpacking linux-libc-dev-armel-cross (5.2.9-2cross7) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../061-libc6-dev-armel-cross_2.29-1cross7_all.deb ... Unpacking libc6-dev-armel-cross (2.29-1cross7) ... Selecting previously unselected package libstdc++-9-dev-armel-cross. Preparing to unpack .../062-libstdc++-9-dev-armel-cross_9.2.1-19cross1_all.deb ... Unpacking libstdc++-9-dev-armel-cross (9.2.1-19cross1) ... Selecting previously unselected package g++-9-arm-linux-gnueabi. Preparing to unpack .../063-g++-9-arm-linux-gnueabi_9.2.1-19cross1_amd64.deb ... Unpacking g++-9-arm-linux-gnueabi (9.2.1-19cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../064-g++-arm-linux-gnueabi_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../065-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../066-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../067-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../068-libxml2_2.9.4+dfsg1-7+b4_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../069-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../070-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../071-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../072-libxml-libxml-perl_2.0134+dfsg-1+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../073-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../074-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../075-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../076-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../077-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../078-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../079-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../080-crossbuild-essential-armel_12.8_all.deb ... Unpacking crossbuild-essential-armel (12.8) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../081-d-shlibs_0.88_all.deb ... Unpacking d-shlibs (0.88) ... Selecting previously unselected package libtool. Preparing to unpack .../082-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../083-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../084-libdebhelper-perl_12.7.1_all.deb ... Unpacking libdebhelper-perl (12.7.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../085-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../086-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../087-libfile-stripnondeterminism-perl_1.6.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../088-dh-strip-nondeterminism_1.6.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../089-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../090-dwz_0.13-2_amd64.deb ... Unpacking dwz (0.13-2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../091-libglib2.0-0_2.62.2-3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.62.2-3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../092-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../093-libncurses6_6.1+20191019-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20191019-1) ... Selecting previously unselected package gettext. Preparing to unpack .../094-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../095-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../096-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../097-debhelper_12.7.1_all.deb ... Unpacking debhelper (12.7.1) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../098-libasan5_9.2.1-19_armel.deb ... Unpacking libasan5:armel (9.2.1-19) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../099-libatomic1_9.2.1-19_armel.deb ... Unpacking libatomic1:armel (9.2.1-19) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../100-linux-libc-dev_5.3.9-2_armel.deb ... Unpacking linux-libc-dev:armel (5.3.9-2) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../101-libc6-dev_2.29-3_armel.deb ... Unpacking libc6-dev:armel (2.29-3) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../102-libgomp1_9.2.1-19_armel.deb ... Unpacking libgomp1:armel (9.2.1-19) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../103-libstdc++6_9.2.1-19_armel.deb ... Unpacking libstdc++6:armel (9.2.1-19) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../104-libubsan1_9.2.1-19_armel.deb ... Unpacking libubsan1:armel (9.2.1-19) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../105-libgcc-9-dev_9.2.1-19_armel.deb ... Unpacking libgcc-9-dev:armel (9.2.1-19) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../106-libstdc++-9-dev_9.2.1-19_armel.deb ... Unpacking libstdc++-9-dev:armel (9.2.1-19) ... Selecting previously unselected package pkg-config. Preparing to unpack .../107-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../108-zlib1g_1%3a1.2.11.dfsg-1+b1_armel.deb ... Unpacking zlib1g:armel (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../109-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../110-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-arm-linux-gnueabi (2.33.1-2) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.62.2-3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libdebhelper-perl (12.7.1) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up linux-libc-dev:armel (5.3.9-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (5.2.9-2cross7) ... Setting up ruby-minitest (5.11.3-1) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.2.1-19cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up ruby-test-unit (3.2.9-1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.88) ... Setting up gcc-9-cross-base (9.2.1-19cross1) ... Setting up libc6-armel-cross (2.29-1cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev-armel-cross (2.29-1cross7) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up openssl (1.1.1d-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-3) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b4) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.2.1-19) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up libgomp1-armel-cross (9.2.1-19cross1) ... Setting up libtool (2.4.6-11) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armel-cross (9.2.1-19cross1) ... Setting up libgcc1-armel-cross (1:9.2.1-19cross1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libasan5-armel-cross (9.2.1-19cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-2) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up rubygems-integration (1.14) ... Setting up libstdc++6-armel-cross (9.2.1-19cross1) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-armel-cross (9.2.1-19cross1) ... Setting up libgcc-9-dev-armel-cross (9.2.1-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-19cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libgcc1:armel (1:9.2.1-19) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.29-3) ... Setting up libc6-dev:armel (2.29-3) ... Setting up libstdc++6:armel (9.2.1-19) ... Setting up ruby2.5 (2.5.7-1) ... Setting up debhelper (12.7.1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:armel (9.2.1-19) ... Setting up libsubunit0:armel (1.3.0-6) ... Setting up libasan5:armel (9.2.1-19) ... Setting up ruby (1:2.5.2) ... Setting up ruby-asciidoctor (2.0.10-2) ... Setting up rake (12.3.3-1) ... Setting up libatomic1:armel (9.2.1-19) ... Setting up asciidoctor (2.0.10-2) ... Setting up libubsan1:armel (9.2.1-19) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-1+b1) ... Setting up libruby2.5:amd64 (2.5.7-1) ... Setting up libsubunit-dev:armel (1.3.0-6) ... Setting up libgcc-9-dev:armel (9.2.1-19) ... Setting up check:armel (0.12.0-0.1) ... Setting up libstdc++-9-dev:armel (9.2.1-19) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-24 g++-9_9.2.1-19 gcc-8_8.3.0-24 gcc-9_9.2.1-19 libc6-dev_2.29-3 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 linux-libc-dev_5.3.9-2 Package versions: adduser_3.118 apt_1.8.4 asciidoctor_2.0.10-2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2 binutils-arm-linux-gnueabi_2.33.1-2 binutils-common_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 check_0.12.0-0.1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-24 cpp-9_9.2.1-19 cpp-9-arm-linux-gnueabi_9.2.1-19cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-24 g++-9_9.2.1-19 g++-9-arm-linux-gnueabi_9.2.1-19cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-24 gcc-8-base_8.3.0-24 gcc-9_9.2.1-19 gcc-9-arm-linux-gnueabi_9.2.1-19cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-19cross1 gcc-9-base_9.2.1-19 gcc-9-cross-base_9.2.1-19cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-19 libasan5-armel-cross_9.2.1-19cross1 libatomic1_9.2.1-19 libatomic1-armel-cross_9.2.1-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3 libc-dev-bin_2.29-3 libc6_2.29-3 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-3 libc6-dev-armel-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-19 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-24 libgcc-9-dev_9.2.1-19 libgcc-9-dev-armel-cross_9.2.1-19cross1 libgcc1_1:9.2.1-19 libgcc1-armel-cross_1:9.2.1-19cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-19 libgomp1-armel-cross_9.2.1-19cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-19 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-19 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-24 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libquadmath0_9.2.1-19 libreadline8_8.0-3 libruby2.5_2.5.7-1 libseccomp2_2.4.2-2 libselinux1_2.9-3+b1 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 libsub-override-perl_0.09-2 libsubunit-dev_1.3.0-6 libsubunit0_1.3.0-6 libsystemd0_243-7 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-19 libubsan1_9.2.1-19 libubsan1-armel-cross_9.2.1-19cross1 libuchardet0_0.0.6-3 libudev1_243-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b4 libyaml-0-2_0.2.2-1 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.9-2 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 openssl_1.1.1d-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pkg-config_0.29-6 po-debconf_1.0.21 rake_12.3.3-1 readline-common_8.0-3 ruby_1:2.5.2 ruby-asciidoctor_2.0.10-2 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.9-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.7-1 rubygems-integration_1.14 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snp-sites Binary: snp-sites, libsnp-sites1, libsnp-sites1-dev Architecture: any Version: 2.5.1-1 Maintainer: Debian Med Packaging Team Uploaders: Jorge Soares , Andreas Tille , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/snp-sites Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/snp-sites Vcs-Git: https://salsa.debian.org/med-team/snp-sites.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, zlib1g, zlib1g-dev Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Package-List: libsnp-sites1 deb libs optional arch=any libsnp-sites1-dev deb libdevel optional arch=any snp-sites deb science optional arch=any Checksums-Sha1: 225ae5918875829a3d9d7a08daf383195d4edbe4 15577807 snp-sites_2.5.1.orig.tar.gz 1d9b6975cf394db4f260021435ba7883e2c9b2a8 7968 snp-sites_2.5.1-1.debian.tar.xz Checksums-Sha256: 913f79302e5d3127aea382756abc9ffeb05e26ce00022f43a6ea16a55cdd7a7e 15577807 snp-sites_2.5.1.orig.tar.gz 0f5b2e6dcddea62310aea84af8db0c5fb3c6b0984f3a1b8376555de10d2549b9 7968 snp-sites_2.5.1-1.debian.tar.xz Files: a4183dadd8f8d56398654c943e4f1811 15577807 snp-sites_2.5.1.orig.tar.gz 3279cfd988b49767ca39b93dd15db4af 7968 snp-sites_2.5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAl2wh3EACgkQ6NN64vCf SHK8gQ/9ELPKIPTDJ8C0lAaPGb1/ruMceSxZHKDDEgxtdWFfA09H+N6hCqTqlOhT KxFdHK5LYY18hb3bgLVsnnFMuGEvoAI57bv0MFi1RpDWGYhX9wvZe2bYv9hkxd0K 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extracting snp-sites in /<> dpkg-source: info: unpacking snp-sites_2.5.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.5.1-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-f2a3c602-900e-423c-839e-ec0bb970b204 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking for arm-linux-gnueabi-pkg-config... /usr/bin/arm-linux-gnueabi-pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking whether make supports the include directive... yes (GNU style) checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabi-gcc... none checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabi-gcc... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabi-nm -B checking the name lister (/usr/bin/arm-linux-gnueabi-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabi format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabi/bin/ld option to reload object files... -r checking for arm-linux-gnueabi-objdump... arm-linux-gnueabi-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabi-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabi-strip... (cached) arm-linux-gnueabi-strip checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking command to parse /usr/bin/arm-linux-gnueabi-nm -B output from arm-linux-gnueabi-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabi-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabi-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabi-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-gcc static flag -static works... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-gcc linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for arm-linux-gnueabi-gcc... (cached) arm-linux-gnueabi-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether arm-linux-gnueabi-gcc accepts -g... (cached) yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... (cached) none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... (cached) yes checking dependency style of arm-linux-gnueabi-gcc... (cached) none checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether we are using the GNU C++ compiler... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking dependency style of arm-linux-gnueabi-g++... none checking how to run the C++ preprocessor... arm-linux-gnueabi-g++ -E checking for ld used by arm-linux-gnueabi-g++... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabi-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-g++ static flag -static works... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/arm-linux-gnueabi alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: arm-linux-gnueabi-gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: arm-linux-gnueabi-ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: arm-linux-gnueabi-ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: arm-linux-gnueabi-gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabi install -d -m 755 debian/libsnp-sites1/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/arm-linux-gnueabi PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_perl: /usr/lib/arm-linux-gnueabi/perl/cross-config-5.30.0/Config.pm does not exist (missing build dependency on perl-xs-dev?) dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libsnp-sites1-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snp-sites' in '../snp-sites_2.5.1-1_armel.deb'. dpkg-deb: building package 'snp-sites-dbgsym' in '../snp-sites-dbgsym_2.5.1-1_armel.deb'. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.5.1-1_armel.deb'. dpkg-deb: building package 'libsnp-sites1-dbgsym' in '../libsnp-sites1-dbgsym_2.5.1-1_armel.deb'. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.5.1-1_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snp-sites_2.5.1-1_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-11-16T05:09:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.5.1-1_armel.changes: -------------------------------- Format: 1.8 Date: Wed, 23 Oct 2019 18:43:51 +0200 Source: snp-sites Binary: libsnp-sites1 libsnp-sites1-dbgsym libsnp-sites1-dev snp-sites snp-sites-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 2.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.5.1-1) unstable; urgency=medium . [ Andreas Tille ] * Fix EDAM syntax. . [ Steffen Moeller ] * Perform yamllint. . [ Sascha Steinbiss ] * New upstream release. Checksums-Sha1: d26c44f9c2384079995f3530dc476ba31985b256 21264 libsnp-sites1-dbgsym_2.5.1-1_armel.deb 0a3eaf715dc683a374f8ea992395247a9ff77320 16856 libsnp-sites1-dev_2.5.1-1_armel.deb 8fc15e78316ad5270b4a7ac1eeb96abc29b90067 13072 libsnp-sites1_2.5.1-1_armel.deb 9d9fa10e6fdd8dd82653a39a2796b668f78f617f 6512 snp-sites-dbgsym_2.5.1-1_armel.deb 10db1bd003d058222391a0ac160eb5f73682b1dd 6573 snp-sites_2.5.1-1_armel.buildinfo f8c7392656c8e2454b7cba8843263fce9f15893e 13888 snp-sites_2.5.1-1_armel.deb Checksums-Sha256: efabcd86b28632ad1f90ab4f8d6515742f52e1c3218993fa7a0f43e911e5567c 21264 libsnp-sites1-dbgsym_2.5.1-1_armel.deb eed5c4c42313b5f1d7db25ceeebb4ee04f08dfcb6c58f8412767ba393bdda4af 16856 libsnp-sites1-dev_2.5.1-1_armel.deb b0b0770bcb08913071848e64cb85fc557ad482062dc12ea862da85e0b1896454 13072 libsnp-sites1_2.5.1-1_armel.deb be2e2afd8a746b2b0dd64b22adad271147553244424b1183d664dd96fa2b9623 6512 snp-sites-dbgsym_2.5.1-1_armel.deb 84c6304bc1cab42d83970dd14981ddf48f09b7ac840232d8844053658349244f 6573 snp-sites_2.5.1-1_armel.buildinfo 9e1751ad6d19a5f08108715de808893691912b625d510ba2bbe71fec8f48f33c 13888 snp-sites_2.5.1-1_armel.deb Files: 36d84e3101ec4fa5b063a2972a3ca80c 21264 debug optional libsnp-sites1-dbgsym_2.5.1-1_armel.deb 4a92da99a76c3d23c587d99cb5194f5d 16856 libdevel optional libsnp-sites1-dev_2.5.1-1_armel.deb 131510a76d84d30ebf61a80555da6e00 13072 libs optional libsnp-sites1_2.5.1-1_armel.deb d7adeae8f06edf6ce5f851c2a8ed8ce9 6512 debug optional snp-sites-dbgsym_2.5.1-1_armel.deb 49355bdbbd64aaa117c926b3203463b1 6573 science optional snp-sites_2.5.1-1_armel.buildinfo 39495c790af18ec521b57a151f428b3f 13888 science optional snp-sites_2.5.1-1_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: armel Version: 2.5.1-1 Checksums-Md5: 36d84e3101ec4fa5b063a2972a3ca80c 21264 libsnp-sites1-dbgsym_2.5.1-1_armel.deb 4a92da99a76c3d23c587d99cb5194f5d 16856 libsnp-sites1-dev_2.5.1-1_armel.deb 131510a76d84d30ebf61a80555da6e00 13072 libsnp-sites1_2.5.1-1_armel.deb d7adeae8f06edf6ce5f851c2a8ed8ce9 6512 snp-sites-dbgsym_2.5.1-1_armel.deb 39495c790af18ec521b57a151f428b3f 13888 snp-sites_2.5.1-1_armel.deb Checksums-Sha1: d26c44f9c2384079995f3530dc476ba31985b256 21264 libsnp-sites1-dbgsym_2.5.1-1_armel.deb 0a3eaf715dc683a374f8ea992395247a9ff77320 16856 libsnp-sites1-dev_2.5.1-1_armel.deb 8fc15e78316ad5270b4a7ac1eeb96abc29b90067 13072 libsnp-sites1_2.5.1-1_armel.deb 9d9fa10e6fdd8dd82653a39a2796b668f78f617f 6512 snp-sites-dbgsym_2.5.1-1_armel.deb f8c7392656c8e2454b7cba8843263fce9f15893e 13888 snp-sites_2.5.1-1_armel.deb Checksums-Sha256: efabcd86b28632ad1f90ab4f8d6515742f52e1c3218993fa7a0f43e911e5567c 21264 libsnp-sites1-dbgsym_2.5.1-1_armel.deb eed5c4c42313b5f1d7db25ceeebb4ee04f08dfcb6c58f8412767ba393bdda4af 16856 libsnp-sites1-dev_2.5.1-1_armel.deb b0b0770bcb08913071848e64cb85fc557ad482062dc12ea862da85e0b1896454 13072 libsnp-sites1_2.5.1-1_armel.deb be2e2afd8a746b2b0dd64b22adad271147553244424b1183d664dd96fa2b9623 6512 snp-sites-dbgsym_2.5.1-1_armel.deb 9e1751ad6d19a5f08108715de808893691912b625d510ba2bbe71fec8f48f33c 13888 snp-sites_2.5.1-1_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 16 Nov 2019 05:09:19 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.4), asciidoctor (= 2.0.10-2), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-5), binutils (= 2.33.1-2), binutils-common (= 2.33.1-2), binutils-x86-64-linux-gnu (= 2.33.1-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), ca-certificates (= 20190110), check (= 0.12.0-0.1), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-24), cpp-9 (= 9.2.1-19), d-shlibs (= 0.88), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.1), debian-archive-keyring (= 2019.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-2), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-19), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-24), gcc-8-base (= 8.3.0-24), gcc-9 (= 9.2.1-19), gcc-9-base (= 9.2.1-19), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.17-3), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libapt-pkg5.0 (= 1.8.4), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-19), libatomic1 (= 9.2.1-19), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.33.1-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-3), libc-dev-bin (= 2.29-3), libc6 (= 2.29-3), libc6-dev (= 2.29-3), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 9.2.1-19), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.2-1), libgcc-8-dev (= 8.3.0-24), libgcc-9-dev (= 9.2.1-19), libgcc1 (= 1:9.2.1-19), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.2-3), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.10-4), libgomp1 (= 9.2.1-19), libgpg-error0 (= 1.36-7), libhogweed5 (= 3.5.1+really3.5.1-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-19), liblsan0 (= 9.2.1-19), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-24), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), libp11-kit0 (= 0.23.18.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-19), libreadline8 (= 8.0-3), libruby2.5 (= 2.5.7-1), libseccomp2 (= 2.4.2-2), libselinux1 (= 2.9-3+b1), libsemanage-common (= 2.9-3), libsemanage1 (= 2.9-3), libsepol1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-19), libstdc++6 (= 9.2.1-19), libsub-override-perl (= 0.09-2), libsubunit-dev (= 1.3.0-6), libsubunit0 (= 1.3.0-6), libsystemd0 (= 243-7), libtasn1-6 (= 4.14-3), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-19), libubsan1 (= 9.2.1-19), libuchardet0 (= 0.0.6-3), libudev1 (= 243-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b4), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.4+dfsg-1), linux-libc-dev (= 5.3.9-2), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), openssl (= 1.1.1d-2), passwd (= 1:4.7-2), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), pkg-config (= 0.29-6), po-debconf (= 1.0.21), rake (= 12.3.3-1), readline-common (= 8.0-3), ruby (= 1:2.5.2), ruby-asciidoctor (= 2.0.10-2), ruby-did-you-mean (= 1.2.1-1), ruby-minitest (= 5.11.3-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.1-1), ruby-test-unit (= 3.2.9-1), ruby-xmlrpc (= 0.3.0-2), ruby2.5 (= 2.5.7-1), rubygems-integration (= 1.14), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1571849031" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dbgsym_2.5.1-1_armel.deb -------------------------------------- new Debian package, version 2.0. size 21264 bytes: control archive=544 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libsnp-sites1-dbgsym Source: snp-sites Version: 2.5.1-1 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 35 Depends: libsnp-sites1 (= 2.5.1-1) Section: debug Priority: optional Description: debug symbols for libsnp-sites1 Build-Ids: 3edd24e5ff7437ea30fc22bd4086650d443ac8fc drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/3e/ -rw-r--r-- root/root 25064 2019-10-23 16:43 ./usr/lib/debug/.build-id/3e/dd24e5ff7437ea30fc22bd4086650d443ac8fc.debug drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dbgsym -> libsnp-sites1 libsnp-sites1-dev_2.5.1-1_armel.deb ----------------------------------- new Debian package, version 2.0. size 16856 bytes: control archive=1172 bytes. 954 bytes, 24 lines control 817 bytes, 11 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.5.1-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 62 Depends: libsnp-sites1 (= 2.5.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/include/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/include/snp-sites/ -rw-r--r-- root/root 1487 2019-10-23 16:43 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2019-10-23 16:43 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2019-10-23 16:43 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2019-10-23 16:43 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2151 2019-10-23 16:43 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2019-10-23 16:43 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 21650 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/libsnp-sites.a lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/README.Debian -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/libsnp-sites1-dev/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.5.1-1_armel.deb ------------------------------- new Debian package, version 2.0. size 13072 bytes: control archive=972 bytes. 732 bytes, 19 lines control 311 bytes, 4 lines md5sums 29 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.5.1-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 37 Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 17664 2019-10-23 16:43 ./usr/lib/arm-linux-gnueabi/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/libsnp-sites1/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/libsnp-sites1/copyright snp-sites-dbgsym_2.5.1-1_armel.deb ---------------------------------- new Debian package, version 2.0. size 6512 bytes: control archive=536 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: snp-sites-dbgsym Source: snp-sites Version: 2.5.1-1 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 20 Depends: snp-sites (= 2.5.1-1) Section: debug Priority: optional Description: debug symbols for snp-sites Build-Ids: 29c787268be95eb3f8b9afa4cd4a543a6a4cd6b8 drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 9460 2019-10-23 16:43 ./usr/lib/debug/.build-id/29/c787268be95eb3f8b9afa4cd4a543a6a4cd6b8.debug drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-10-23 16:43 ./usr/share/doc/snp-sites-dbgsym -> snp-sites snp-sites_2.5.1-1_armel.deb --------------------------- new Debian package, version 2.0. size 13888 bytes: control archive=1172 bytes. 1138 bytes, 24 lines control 480 bytes, 7 lines md5sums Package: snp-sites Version: 2.5.1-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 37 Depends: libc6 (>= 2.4), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2019-10-23 16:43 ./ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/bin/ -rwxr-xr-x root/root 13724 2019-10-23 16:43 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2019-10-23 16:43 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2697 2019-10-22 10:21 ./usr/share/doc/snp-sites/README.md.gz -rw-r--r-- root/root 1062 2019-10-23 16:43 ./usr/share/doc/snp-sites/changelog.Debian.gz -rw-r--r-- root/root 2542 2019-10-22 10:21 ./usr/share/doc/snp-sites/changelog.gz -rw-r--r-- root/root 2334 2019-10-23 16:43 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/man/ drwxr-xr-x root/root 0 2019-10-23 16:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1394 2019-10-23 16:43 ./usr/share/man/man1/snp-sites.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [565 B] Get:5 copy:/<>/apt_archive ./ Packages [654 B] Fetched 2182 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libdata-dump-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. 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Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.016-1+b2) ... Setting up diffstat (1.62-1+b1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up gpgconf (2.2.17-3) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up liburi-perl (1.76-1) ... Setting up gpg (2.2.17-3) ... Setting up libnet-ssleay-perl (1.88-1+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up libnet-dns-perl (1.20-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.36.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 21220 Build-Time: 29 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 21 Job: snp-sites_2.5.1-1 Lintian: pass Machine Architecture: amd64 Package: snp-sites Package-Time: 64 Source-Version: 2.5.1-1 Space: 21220 Status: successful Version: 2.5.1-1 -------------------------------------------------------------------------------- Finished at 2019-11-16T05:09:20Z Build needed 00:01:04, 21220k disk space