sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | soapaligner 2.20-5 (amd64) Tue, 04 Jan 2022 02:33:51 +0000 | +==============================================================================+ Package: soapaligner Version: 2.20-5 Source Version: 2.20-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-158d4d04-8239-4f15-9052-93582ee23cf1' with '<>' I: NOTICE: Log filtering will replace 'build/soapaligner-jcRzDq/resolver-ZHNOCW' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8866 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9425 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8728 kB] Fetched 27.2 MB in 7s (3835 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-aarch64-linux-gnu binutils-common libbinutils libctf-nobfd0 libctf0 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5829 kB of archives. After this operation, 8192 B disk space will be freed. Get:1 http://mirror.einval.org/debian sid/main arm64 libctf0 arm64 2.37-10.1 [85.9 kB] Get:2 http://mirror.einval.org/debian sid/main arm64 libctf-nobfd0 arm64 2.37-10.1 [148 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 binutils arm64 2.37-10.1 [62.3 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 binutils-aarch64-linux-gnu arm64 2.37-10.1 [2640 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libbinutils arm64 2.37-10.1 [606 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 binutils-common arm64 2.37-10.1 [2287 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5829 kB in 0s (56.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12350 files and directories currently installed.) Preparing to unpack .../0-libctf0_2.37-10.1_arm64.deb ... Unpacking libctf0:arm64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../1-libctf-nobfd0_2.37-10.1_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../2-binutils_2.37-10.1_arm64.deb ... Unpacking binutils (2.37-10.1) over (2.37-10) ... Preparing to unpack .../3-binutils-aarch64-linux-gnu_2.37-10.1_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.37-10.1) over (2.37-10) ... Preparing to unpack .../4-libbinutils_2.37-10.1_arm64.deb ... Unpacking libbinutils:arm64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../5-binutils-common_2.37-10.1_arm64.deb ... Unpacking binutils-common:arm64 (2.37-10.1) over (2.37-10) ... Setting up binutils-common:arm64 (2.37-10.1) ... Setting up libctf-nobfd0:arm64 (2.37-10.1) ... Setting up libbinutils:arm64 (2.37-10.1) ... Setting up libctf0:arm64 (2.37-10.1) ... Setting up binutils-aarch64-linux-gnu (2.37-10.1) ... Setting up binutils (2.37-10.1) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://mirror.einval.org/debian sid/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://mirror.einval.org/debian sid/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (1316 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/soapaligner-jcRzDq/soapaligner-2.20' with '<>' I: NOTICE: Log filtering will replace 'build/soapaligner-jcRzDq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [490 B] Fetched 1851 B in 0s (43.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-2 [295 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-2 [124 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-2 [66.8 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.2-5 [144 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.4-2 [34.5 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-4 [1336 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.1 [823 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu-base arm64 11.2.0-9cross1 [205 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 cpp-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [48.2 MB] Get:22 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:11.2.0-2 [17.0 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all 11.2.0-9cross1 [2010 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 11.2.0-9cross1 [535 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 11.2.0-9cross1 [834 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 11.2.0-9cross1 [145 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.2.0-9cross1 [2357 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [54.7 MB] Get:39 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B] Get:40 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.2.0-9cross1 [1952 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [52.2 MB] Get:44 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B] Get:45 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5+b1 [633 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:61 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.6 [193 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.186-1 [177 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:74 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-13 [207 kB] Get:75 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-13 [42.0 kB] Get:76 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-1 [2826 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-13 [2050 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-13 [9048 B] Get:79 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.15.5-2 [1457 kB] Get:80 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1 [89.0 kB] Get:81 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.27-1 [104 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-1 [75.6 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-7 [113 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1m-1 [1557 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-7 [363 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [165 kB] Get:89 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-1 [2272 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 11.2.0-13 [106 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 11.2.0-13 [26.0 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 11.2.0-13 [886 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-13 [2019 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-13 [576 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 11.2.0-13 [835 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-13 [145 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.2.0-13 [2359 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.2.0-13 [1978 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 214 MB in 2s (87.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12350 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-2_arm64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.41-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-2_arm64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... 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Setting up libpipeline1:arm64 (1.5.4-2) ... Setting up gcc-11-base:amd64 (11.2.0-13) ... Setting up libfile-which-perl (1.23-1) ... Setting up linux-libc-dev-amd64-cross (5.15.5-1cross1) ... Setting up bsdextrautils (2.37.2-5) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up linux-libc-dev:amd64 (5.15.5-2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up gcc-11-x86-64-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up file (1:5.41-2) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libc6-amd64-cross (2.33-1cross1) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-s1-amd64-cross (11.2.0-9cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libasan6-amd64-cross (11.2.0-9cross1) ... Setting up binutils-x86-64-linux-gnu (2.37-10.1) ... Setting up libstdc++6-amd64-cross (11.2.0-9cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up liblsan0-amd64-cross (11.2.0-9cross1) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libtsan0-amd64-cross (11.2.0-9cross1) ... Setting up cpp-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-amd64-cross (11.2.0-9cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libitm1-amd64-cross (11.2.0-9cross1) ... Setting up libatomic1-amd64-cross (11.2.0-9cross1) ... Setting up libquadmath0-amd64-cross (11.2.0-9cross1) ... Setting up libubsan1-amd64-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-x86-64-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up gcc-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up g++-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (11.2.0-13) ... Setting up libc6:amd64 (2.33-1) ... Setting up libstdc++6:amd64 (11.2.0-13) ... Setting up liblsan0:amd64 (11.2.0-13) ... Setting up libitm1:amd64 (11.2.0-13) ... Setting up libtsan0:amd64 (11.2.0-13) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libssl1.1:amd64 (1.1.1m-1) ... Setting up libcrypt1:amd64 (1:4.4.27-1) ... Setting up libcom-err2:amd64 (1.46.5-1) ... Setting up libgomp1:amd64 (11.2.0-13) ... Setting up libasan6:amd64 (11.2.0-13) ... Setting up libkrb5support0:amd64 (1.18.3-7) ... Setting up libquadmath0:amd64 (11.2.0-13) ... Setting up libatomic1:amd64 (11.2.0-13) ... Setting up libk5crypto3:amd64 (1.18.3-7) ... Setting up libubsan1:amd64 (11.2.0-13) ... Setting up libgcc-11-dev:amd64 (11.2.0-13) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up libkrb5-3:amd64 (1.18.3-7) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-7) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.33-1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-13) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-10.1 dpkg-dev_1.21.1 g++-11_11.2.0-13 gcc-11_11.2.0-13 libc6-dev_2.33-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-13 libstdc++6-amd64-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-5+b1 binutils_2.37-10.1 binutils-aarch64-linux-gnu_2.37-10.1 binutils-common_2.37-10.1 binutils-x86-64-linux-gnu_2.37-10.1 bsdextrautils_2.37.2-5 bsdutils_1:2.37.2-5 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-13 cpp-11-x86-64-linux-gnu_11.2.0-9cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 fakeroot_1.26-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-13 g++-11-x86-64-linux-gnu_11.2.0-9cross1 g++-x86-64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-13 gcc-11_11.2.0-13 gcc-11-base_11.2.0-13 gcc-11-cross-base_11.2.0-9cross1 gcc-11-x86-64-linux-gnu_11.2.0-9cross1 gcc-11-x86-64-linux-gnu-base_11.2.0-9cross1 gcc-x86-64-linux-gnu_4:11.2.0-2 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libfakeroot_1.26-1.1 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-13 libgcc-11-dev-amd64-cross_11.2.0-9cross1 libgcc-s1_11.2.0-13 libgcc-s1-amd64-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-4 libgomp1_11.2.0-13 libgomp1-amd64-cross_11.2.0-9cross1 libgpg-error0_1.43-1 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwasan0_11.2.0-13 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-13 libitm1-amd64-cross_11.2.0-9cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-13 liblsan0-amd64-cross_11.2.0-9cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-5 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-2 libquadmath0_11.2.0-13 libquadmath0-amd64-cross_11.2.0-9cross1 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage2_3.3-1+b1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-5 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-13 libstdc++6-amd64-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.7-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-13 libtsan0-amd64-cross_11.2.0-9cross1 libubsan1_11.2.0-13 libubsan1-amd64-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.7-1 libunistring2_0.9.10-6 libuuid1_2.37.2-5 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.5-2 linux-libc-dev-amd64-cross_5.15.5-1cross1 login_1:4.8.1-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-5 ncurses-base_6.3-1 ncurses-bin_6.3-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-5 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: soapaligner Binary: soapaligner Architecture: any-amd64 Version: 2.20-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/soapaligner Vcs-Git: https://salsa.debian.org/med-team/soapaligner.git Build-Depends: debhelper-compat (= 13) Package-List: soapaligner deb science optional arch=any-amd64,x32 Checksums-Sha1: b99762edeee90352f191511f0d26db32ab9e43d1 110922 soapaligner_2.20.orig.tar.gz 3a8105fb94fe86e89a53059b09ad5f9ecc119022 6408 soapaligner_2.20-5.debian.tar.xz Checksums-Sha256: c5253dddc35e289723f3daada4a3a083111ff6fb9898bc8241dab6f6f972d456 110922 soapaligner_2.20.orig.tar.gz 16c6459f2b63507fd99dfc1e278f0b5bea7092a9934880b88498b8b015fd0ae3 6408 soapaligner_2.20-5.debian.tar.xz Files: ca75753697b12749c42356f366738fef 110922 soapaligner_2.20.orig.tar.gz 94c9ac888c01e1e6c2d7fd85b3850b02 6408 soapaligner_2.20-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAAOt0UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEVWQ/5ASTl2qFB2ifO3+cEaZaTgyhTU8I3 T1E0DzDC3ix8ZVf2wQcVrHsYzP6A9en4yuWDH4FELvqcjJXRj6IVxbTdF+hG6rH8 rx9K+O5rmmbxkhH4VVElEeSC0Xrzo/vtTajES1NzTr+bqyUxnxIqve8sARQ7cA9J V3mmzqPLreJGrpN2unE4X+dvkt2v7xgMwAPT3otfHYtzngMtE59t+cqeyWic5LAj 2kBhbXTQghfMLvdIeX/MGz36FsKWzGB7bJOVKbTDstgMy5OWRSBfPF4eMOliP8xD nH5xrVfHy9FgEUCBjEkPxcu00GQEUQMtAklI5vzI6xMLRsbg2E+yjwHKQIpuJuMZ rDwe7eMqwiecmvT/lznauKam34meWhrgx3ClKnv9BxOObvlcAWWc5I4qxL8/N09S XuIy7Se2wmiNNxpyTFP6f4NtRrtadZW31Y0bsucZVFkaomN+RaIO8MGldgF2idyp o2QMnI6WAgoUZD90/2zsQj0RrVgBG13FPjRgNGgblzoelCr77gHgcV0i+bdLYm+J zK+UE2Ma76BiFs2idti1zh8hCE5cbr2hYWDSBdaYObN8KZmJE7bBCVH0YxDrASN/ PTANR6FXQ0kqOpWWZ8H45OcEVMu9hhbxUJf2z4xF9LXBEsfvLfv4QXepdL0lnK1b bEp8xTfp9oRghtA= =xZ4B -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Lt8YQdRD/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 14 12:36:45 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./soapaligner_2.20-5.dsc dpkg-source: info: extracting soapaligner in /<> dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-158d4d04-8239-4f15-9052-93582ee23cf1 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 clean make[1]: Entering directory '/<>' rm -f *.o soap make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[1]: Entering directory '/<>' x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o r250.c: In function ‘randlcg’: r250.c:33:41: warning: overflow in conversion from ‘long int’ to ‘int’ changes value from ‘548781581296767’ to ‘724984959’ [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o In file included from extratools.c:1: extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o In file included from Match.c:17: Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from Match.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o In file included from PairMatch.c:19: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from PairMatch.c:19: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o x86_64-linux-gnu-gcc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o In file included from soap.c:24: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from soap.c:24: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ x86_64-linux-gnu-gcc -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-z,relro -lm -lpthread In function ‘aln_local_core’, inlined from ‘SWRescue’ at PairMatch.c:167:3: stdaln.c:740:17: warning: ‘free’ called on pointer ‘MEM[(int * *)_1909]’ with nonzero offset 4 [-Wfree-nonheap-object] 740 | MYFREE(s_array[i]); | ^ make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install --destdir=debian/soapaligner/ -a install -d /<>/debian/soapaligner dh_install -a install -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ install -d debian/.debhelper/generated/soapaligner dh_installdocs -a install -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman -a install -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/<>' dh_fixperms -a find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a install -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/5d x86_64-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/5d/675bf152d3b038ed822232a40190d849648d9d.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/5d/675bf152d3b038ed822232a40190d849648d9d.debug x86_64-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/soapaligner/usr/bin/soap x86_64-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/5d/675bf152d3b038ed822232a40190d849648d9d.debug debian/soapaligner/usr/bin/soap install -d debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc ln -s soapaligner debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc/soapaligner-dbgsym dh_makeshlibs -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a install -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars install -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -Pdebian/.debhelper/soapaligner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=soapaligner-dbgsym "-DDepends=soapaligner (= \${binary:Version})" "-DDescription=debug symbols for soapaligner" -DBuild-Ids=5d675bf152d3b038ed822232a40190d849648d9d -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/control dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums -a cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums cd debian/.debhelper/soapaligner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/soapaligner .. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/soapaligner/dbgsym-root .. dpkg-deb: building package 'soapaligner-dbgsym' in '../soapaligner-dbgsym_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=any -O../soapaligner_2.20-5_amd64.buildinfo dpkg-genchanges --build=any -O../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-04T02:35:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ soapaligner_2.20-5_amd64.changes: --------------------------------- Format: 1.8 Date: Thu, 14 Jan 2021 17:05:45 +0530 Source: soapaligner Binary: soapaligner soapaligner-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.20-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: soapaligner - aligner of short reads of next generation sequencers Closes: 979681 Changes: soapaligner (2.20-5) unstable; urgency=medium . * Team Upload. * d/p/gcc-10.patch: Fix compilation with GCC 10. - Thank you, Logan Rosen (Closes: #979681) * Declare compliance with policy 4.5.1 * Bump debhelper-compat version to 13 Checksums-Sha1: d5d719beb3190a2238a5adda947030588936e1a5 108272 soapaligner-dbgsym_2.20-5_amd64.deb c87521c305fa78c485e56166bba0f96b0881f81c 4871 soapaligner_2.20-5_amd64.buildinfo e6298d0eb2beb7d3e86124458dfc591c79b1eeb8 52596 soapaligner_2.20-5_amd64.deb Checksums-Sha256: f70639c18d67d45e05328c85d5aff27442ce1dc2d7e617d19f390ea57ab8e66f 108272 soapaligner-dbgsym_2.20-5_amd64.deb 351e2adecc831de9b0460a3327f1569340d2378a9afd7c6a6cafabde810ec12e 4871 soapaligner_2.20-5_amd64.buildinfo ef9b130b4170e6b60b6bda53cbc7ef91c65164304ee364e11099bf2eedc6660b 52596 soapaligner_2.20-5_amd64.deb Files: e2d3cad5ff95f130c5a6ab42a62fa1bb 108272 debug optional soapaligner-dbgsym_2.20-5_amd64.deb 55663ba6e0036de3735872805580c8c5 4871 science optional soapaligner_2.20-5_amd64.buildinfo e15d0aaeed3ec22312575ba9b3fda64c 52596 science optional soapaligner_2.20-5_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: soapaligner Binary: soapaligner soapaligner-dbgsym Architecture: amd64 Version: 2.20-5 Checksums-Md5: e2d3cad5ff95f130c5a6ab42a62fa1bb 108272 soapaligner-dbgsym_2.20-5_amd64.deb e15d0aaeed3ec22312575ba9b3fda64c 52596 soapaligner_2.20-5_amd64.deb Checksums-Sha1: d5d719beb3190a2238a5adda947030588936e1a5 108272 soapaligner-dbgsym_2.20-5_amd64.deb e6298d0eb2beb7d3e86124458dfc591c79b1eeb8 52596 soapaligner_2.20-5_amd64.deb Checksums-Sha256: f70639c18d67d45e05328c85d5aff27442ce1dc2d7e617d19f390ea57ab8e66f 108272 soapaligner-dbgsym_2.20-5_amd64.deb ef9b130b4170e6b60b6bda53cbc7ef91c65164304ee364e11099bf2eedc6660b 52596 soapaligner_2.20-5_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Tue, 04 Jan 2022 02:35:53 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-5+b1), binutils (= 2.37-10.1), binutils-aarch64-linux-gnu (= 2.37-10.1), binutils-common (= 2.37-10.1), bsdextrautils (= 2.37.2-5), bsdutils (= 1:2.37.2-5), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-13), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-13), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-13), gcc-11-base (= 11.2.0-13), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-13), libatomic1 (= 11.2.0-13), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37-10.1), libblkid1 (= 2.37.2-5), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-1), libc-dev-bin (= 2.33-1), libc6 (= 2.33-1), libc6-dev (= 2.33-1), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-13), libcom-err2 (= 1.46.5-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37-10.1), libctf0 (= 2.37-10.1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-13), libgcc-s1 (= 11.2.0-13), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 11.2.0-13), libgpg-error0 (= 1.43-1), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-13), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-13), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-5), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.4-2), libquadmath0 (= 11.2.0-13), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-5), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-13), libstdc++6 (= 11.2.0-13), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.7-1), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-13), libubsan1 (= 11.2.0-13), libuchardet0 (= 0.0.7-1), libudev1 (= 249.7-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-5), libxml2 (= 2.9.12+dfsg-5+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-5), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610624145" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ soapaligner-dbgsym_2.20-5_amd64.deb ----------------------------------- new Debian package, version 2.0. size 108272 bytes: control archive=528 bytes. 384 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: soapaligner-dbgsym Source: soapaligner Version: 2.20-5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 122 Depends: soapaligner (= 2.20-5) Section: debug Priority: optional Description: debug symbols for soapaligner Build-Ids: 5d675bf152d3b038ed822232a40190d849648d9d drwxr-xr-x root/root 0 2021-01-14 11:35 ./ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 114576 2021-01-14 11:35 ./usr/lib/debug/.build-id/5d/675bf152d3b038ed822232a40190d849648d9d.debug drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-01-14 11:35 ./usr/share/doc/soapaligner-dbgsym -> soapaligner soapaligner_2.20-5_amd64.deb ---------------------------- new Debian package, version 2.0. size 52596 bytes: control archive=1360 bytes. 1568 bytes, 30 lines control 402 bytes, 6 lines md5sums Package: soapaligner Version: 2.20-5 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 120 Depends: libc6 (>= 2.14) Section: science Priority: optional Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html Description: aligner of short reads of next generation sequencers This package addresses a common problem in bioinformatics that has become routine now also in clinical research: the assembly and comparison of the very long genomic DNA sequences from many short reads that the machines provide. . SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis Package (SOAP) and an updated version of SOAP software for short oligonucleotide alignment (soap v1). The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length. . SOAPaligner/soap2 benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used. The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu). drwxr-xr-x root/root 0 2021-01-14 11:35 ./ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/bin/ -rwxr-xr-x root/root 103880 2021-01-14 11:35 ./usr/bin/soap drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/doc/soapaligner/ -rw-r--r-- root/root 95 2010-05-05 04:26 ./usr/share/doc/soapaligner/NEWS.gz -rw-r--r-- root/root 357 2021-01-14 11:27 ./usr/share/doc/soapaligner/README.Debian -rw-r--r-- root/root 918 2021-01-14 11:35 ./usr/share/doc/soapaligner/changelog.Debian.gz -rw-r--r-- root/root 2330 2021-01-14 11:27 ./usr/share/doc/soapaligner/copyright drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/man/man1/ -rw-r--r-- root/root 2170 2021-01-14 11:35 ./usr/share/man/man1/soap.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [533 B] Get:5 copy:/<>/apt_archive ./ Packages [620 B] Fetched 2116 B in 0s (48.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 7633 kB of archives. After this operation, 22.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1-2 [73.8 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1-2 [160 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-3 [540 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.37.1-1 [770 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-3 [885 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get:12 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arm64 1.01-2 [34.3 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-1+b5 [103 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-1 [10.7 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 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http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.120-1 [54.7 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.21-1 [49.8 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.26-1 [28.4 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:89 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1 [195 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-5 [84.8 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7633 kB in 0s (38.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 18596 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.27-3_arm64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../005-libsqlite3-0_3.37.1-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.37.1-1) ... Selecting previously unselected package gpg. 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Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 2628 Build-Time: 30 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 60 Job: soapaligner_2.20-5 Lintian: pass Machine Architecture: arm64 Package: soapaligner Package-Time: 123 Source-Version: 2.20-5 Space: 2628 Status: successful Version: 2.20-5 -------------------------------------------------------------------------------- Finished at 2022-01-04T02:35:54Z Build needed 00:02:03, 2628k disk space