sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | soapdenovo2 242+dfsg-3 (amd64) Fri, 21 Apr 2023 23:42:01 +0000 | +==============================================================================+ Package: soapdenovo2 Version: 242+dfsg-3 Source Version: 242+dfsg-3 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.GZgTuxmULB... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/soapdenovo2-CtlV7X/resolver-6VAa73' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [184 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.1 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9290 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9435 kB] Fetched 29.0 MB in 8s (3789 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'soapdenovo2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapdenovo2.git Please use: git clone https://salsa.debian.org/med-team/soapdenovo2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 741 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main soapdenovo2 242+dfsg-3 (dsc) [2159 B] Get:2 http://mirror.einval.org/debian unstable/main soapdenovo2 242+dfsg-3 (tar) [251 kB] Get:3 http://mirror.einval.org/debian unstable/main soapdenovo2 242+dfsg-3 (diff) [488 kB] Fetched 741 kB in 0s (11.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/soapdenovo2-CtlV7X/soapdenovo2-242+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/soapdenovo2-CtlV7X' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libaio-dev, rename, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libaio-dev, rename, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [801 B] Fetched 2168 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libaio-dev:amd64 libaio1:amd64 libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbam-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf rename sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-x86-64-linux-gnu gcc-12-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-12-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libaio-dev:amd64 libaio1:amd64 libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbam-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf rename sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 96.8 MB of archives. After this operation, 399 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.2.0-14cross1 [37.7 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-12-x86-64-linux-gnu arm64 12.2.0-14cross1 [8764 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:12.2.0-3 [3980 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.40-2 [2368 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 12.2.0-14cross1 [49.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 12.2.0-14cross1 [114 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 12.2.0-14cross1 [25.5 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 12.2.0-14cross1 [9084 B] Get:29 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 12.2.0-14cross1 [2194 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 12.2.0-14cross1 [968 kB] Get:31 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arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:60 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:65 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:67 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:75 http://mirror.einval.org/debian unstable/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB] Get:76 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.36-9 [2753 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 libaio1 amd64 0.3.113-4 [13.4 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libaio-dev amd64 0.3.113-4 [29.5 kB] Get:80 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unstable/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:101 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 rename all 2.01-1 [21.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.8 MB in 1s (86.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up rename (2.01-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libgomp1-amd64-cross (12.2.0-14cross1) ... Setting up libfakeroot:arm64 (1.31-1.2) ... Setting up gcc-12-base:amd64 (12.2.0-14) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libitm1-amd64-cross (12.2.0-14cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libatomic1-amd64-cross (12.2.0-14cross1) ... Setting up libquadmath0-amd64-cross (12.2.0-14cross1) ... Setting up autopoint (0.21-12) ... Setting up libc6-amd64-cross (2.36-8cross1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libgcc-s1-amd64-cross (12.2.0-14cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up gcc-12-x86-64-linux-gnu-base:arm64 (12.2.0-14cross1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up cpp-12-x86-64-linux-gnu (12.2.0-14cross1) ... Setting up libstdc++6-amd64-cross (12.2.0-14cross1) ... Setting up cpp-x86-64-linux-gnu (4:12.2.0-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libasan8-amd64-cross (12.2.0-14cross1) ... Setting up liblsan0-amd64-cross (12.2.0-14cross1) ... Setting up libc6-dev-amd64-cross (2.36-8cross1) ... Setting up libtsan2-amd64-cross (12.2.0-14cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libubsan1-amd64-cross (12.2.0-14cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libgcc-12-dev-amd64-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libstdc++-12-dev-amd64-cross (12.2.0-14cross1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-x86-64-linux-gnu (12.2.0-14cross1) ... Setting up gcc-x86-64-linux-gnu (4:12.2.0-3) ... Setting up debhelper (13.11.4) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-12-x86-64-linux-gnu (12.2.0-14cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:12.2.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (12.2.0-14) ... Setting up libc6:amd64 (2.36-9) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libaio1:amd64 (0.3.113-4) ... Setting up libstdc++6:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libssl3:amd64 (3.0.8-1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... Setting up libcrypt1:amd64 (1:4.4.33-2) ... Setting up libcom-err2:amd64 (1.47.0-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libaio-dev:amd64 (0.3.113-4) ... Setting up libkrb5support0:amd64 (1.20.1-1+b1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libk5crypto3:amd64 (1.20.1-1+b1) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libkrb5-3:amd64 (1.20.1-1+b1) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1+b1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up libbam-dev:amd64 (0.1.19+dfsg-6) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 any-ppc64 any-ia64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.21 g++-12_12.2.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-amd64-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-amd64-cross_12.2.0-14cross1 linux-libc-dev_6.1.20-2 Package versions: apt_2.6.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b1 binutils_2.40-2 binutils-aarch64-linux-gnu_2.40-2 binutils-common_2.40-2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-12_12.2.0-14 cpp-12-x86-64-linux-gnu_12.2.0-14cross1 cpp-x86-64-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-amd64_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.21 dpkg-cross_2.6.20 dpkg-dev_1.21.21 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-12_12.2.0-14 g++-12-x86-64-linux-gnu_12.2.0-14cross1 g++-x86-64-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-12-x86-64-linux-gnu_12.2.0-14cross1 gcc-12-x86-64-linux-gnu-base_12.2.0-14cross1 gcc-x86-64-linux-gnu_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapdenovo2 Binary: soapdenovo2 Architecture: any-amd64 any-ppc64 any-ia64 Version: 242+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://soap.genomics.org.cn/soapdenovo.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo2 Vcs-Git: https://salsa.debian.org/med-team/soapdenovo2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libaio-dev, rename Package-List: soapdenovo2 deb science optional arch=any-amd64,any-ppc64,any-ia64 Checksums-Sha1: c817de22b6e7cea70a4be17c869ab04973963eab 251060 soapdenovo2_242+dfsg.orig.tar.xz be102dfb7719db0bd64ab4a31ded26e024cd0a86 487800 soapdenovo2_242+dfsg-3.debian.tar.xz Checksums-Sha256: ff787d4227c9862347663f7426c71b026559720c501033c96190f8aad26549a1 251060 soapdenovo2_242+dfsg.orig.tar.xz cc23a02d18e0762cd6dcb24082df6ae1deb4a31b0a63f0f7dbe987ec13edacb9 487800 soapdenovo2_242+dfsg-3.debian.tar.xz Files: d09be53b4104c67050aa3757c49b19d1 251060 soapdenovo2_242+dfsg.orig.tar.xz d8569d96fa9f54d0b97ce21cc31884a3 487800 soapdenovo2_242+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOOVHQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjiA//bFAVY/ga9ckdP3d9oMacvAE3igdvAg0h cvboksVx1UPmUtR4oQRd1cDXo5chTpAStpmPaTUCKBVIksnVviDvgGLKLplwpxGE iXFoboNUJTOkp8Rv7fR6bQhlmH2NzxRgWc0uiyBLnG44W7V6u2l9lYT/VLzgIzm/ dTVf5Ps1Uie8v5ixJlQIcxgFYyMU/il0aqHA8hz3QmVQpSjb/oRT1W9D9lgT89o4 91Q1VSEI2Np1WnVZ4LqlwskBtBvTiv8GHGGGPKrJKiZFoP9xWzOMX3bDrrcfg6Re S39FfT+UFZvEjg2sgFHF9oVhQyS8V4b9vjLOl2JFgtjYkMqm0HWgSD9aEUaFzeMc pw1dWulJ5qJGpFFY9WYqoTm9lMXTsDYS21U3zd1F2qMkuNXKenx1K06rtelX0Y7r EtxsNA0K6wTvvqZN2fCPT6zcUCkuOLUTe9/n0p66dd4d95OcyOaOVlMT/ve4sR8R GkFiIPZlqODOEnDGznfIhIYZvkvGg5cjcLktWMcWsN9JmjsXm/2GWrc41mS/ahLf Yi1cIZa6lTzzSZO5WwBJAGRX8mQYpYjD/Nqj1YSwxy/qGrBfnCGkrlQD7T+g3EiG OpxGq8A5MhAkHXE3iEJylj2uqEfDkTTfyGWb7MWIHQSv3ZQNL8FC/+IV5zCSGt7m 2B0vuXo8qFA= =vlKs -----END PGP SIGNATURE----- gpgv: Signature made Mon Dec 5 20:28:36 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./soapdenovo2_242+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting soapdenovo2 in /<> dpkg-source: info: unpacking soapdenovo2_242+dfsg.orig.tar.xz dpkg-source: info: unpacking soapdenovo2_242+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_libsam dpkg-source: info: applying fix_compilation dpkg-source: info: applying fix_usage_name dpkg-source: info: applying add_hardening dpkg-source: info: applying use_debian_zlib dpkg-source: info: applying reproducible dpkg-source: info: applying gcc-10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package soapdenovo2 dpkg-buildpackage: info: source version 242+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' pregraph_sparse_63mer.v1.0.3 cleaning done. SOAPdenovo-63mer cleaning done. SOAPdenovo-fusion cleaning done. make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' cd standardPregraph && make 63mer=1 clean && make 127mer=1 clean make[2]: Entering directory '/<>/standardPregraph' SOAPdenovo-63mer cleaning done. make[2]: Leaving directory '/<>/standardPregraph' make[2]: Entering directory '/<>/standardPregraph' SOAPdenovo-127mer cleaning done. make[2]: Leaving directory '/<>/standardPregraph' cd sparsePregraph && make clean make[2]: Entering directory '/<>/sparsePregraph' pregraph_sparse_63mer.v1.0.3 cleaning done. make[2]: Leaving directory '/<>/sparsePregraph' dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[1]: Entering directory '/<>' pregraph_sparse_63mer.v1.0.3 cleaning done. Compiling build_graph.cpp... Compiling build_edge.cpp... Compiling multi_threads.cpp... Compiling build_preArc.cpp... Compiling pregraph_sparse.cpp... Compiling io_func.cpp... Compiling global.cpp... Compiling convert_soapdenovo.cpp... pregraph_sparse_63mer.v1.0.3 objects generated. SOAPdenovo-63mer cleaning done. Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Compiling cutTip_graph2.c... Compiling linearEdge.c... Compiling kmerhash.c... Compiling read2edge.c... Compiling iterate.c... SOAPdenovo-63mer objects generated. /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: warning: relocation against `_ZTTSt14basic_ofstreamIcSt11char_traitsIcEE' in read-only section `.text.unlikely' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.tcc:225: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned long&, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o:/usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: more undefined references to `operator delete(void*, unsigned long)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `void std::__cxx11::list >::_M_insert(std::_List_iterator, stacked_node2* const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2006: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `void std::__cxx11::list >::_M_insert(std::_List_iterator, stacked_node2* const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2006: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `process_1stack(hashtable2*, int, std::__cxx11::list >&, _IO_FILE*, std::vector >&) [clone .isra.0]': ././build_edge.cpp:1320: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `void std::__cxx11::list >::_M_insert(std::_List_iterator, stacked_node2* const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2006: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::list >::_M_erase(std::_List_iterator)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2016: undefined reference to `std::__detail::_List_node_base::_M_unhook()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::deallocate(std::_List_node*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `void std::__cxx11::list >::_M_insert(std::_List_iterator, stacked_node2* const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2006: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::list >::_M_erase(std::_List_iterator)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_list.h:2016: undefined reference to `std::__detail::_List_node_base::_M_unhook()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::deallocate(std::_List_node*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o:././build_edge.cpp:1116: more undefined references to `operator delete(void*, unsigned long)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::push_back(char)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1528: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1528: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1528: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1528: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:799: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:928: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:933: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/ostream:171: undefined reference to `std::ostream& std::ostream::_M_insert(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/ostream:171: undefined reference to `std::ostream& std::ostream::_M_insert(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(double)': /usr/x86_64-linux-gnu/include/c++/12/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `stat_edge_num(hashtable2*)': ././build_edge.cpp:809: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/ostream:171: undefined reference to `std::ostream& std::ostream::_M_insert(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::close()': /usr/x86_64-linux-gnu/include/c++/12/fstream:1000: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:1000: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::~basic_ofstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:868: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:799: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:928: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:933: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:797: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:799: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:928: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:933: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `stat_edge_cvg_len(hashtable2*)': ././build_edge.cpp:860: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/ostream:171: undefined reference to `std::ostream& std::ostream::_M_insert(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `stat_edge_cvg_len(hashtable2*)': ././build_edge.cpp:865: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ostream::operator<<(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/ostream:171: undefined reference to `std::ostream& std::ostream::_M_insert(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::close()': /usr/x86_64-linux-gnu/include/c++/12/fstream:1000: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:1000: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:1000: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::~basic_ofstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:868: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::~basic_ofstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:868: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `process_1stack(hashtable2*, int, std::__cxx11::list >&, _IO_FILE*, std::vector >&) [clone .isra.0]': ././build_edge.cpp:1320: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator::deallocate(preedge2*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator >::deallocate(std::_List_node*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:801: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `stat_edge_num(hashtable2*)': ././build_edge.cpp:813: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:801: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:801: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ostream >::~basic_ostream()': /usr/x86_64-linux-gnu/include/c++/12/ostream:93: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `stat_edge_cvg_len(hashtable2*)': ././build_edge.cpp:870: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_edge.cpp:870: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator::deallocate(preedge2*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::vector >::_M_check_len(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_vector.h:1894: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree_iterator >::operator--()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:302: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:302: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::_M_insert_node(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node >*)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:2384: undefined reference to `std::_Rb_tree_insert_and_rebalance(bool, std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::_M_insert_node(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node >*)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:2384: undefined reference to `std::_Rb_tree_insert_and_rebalance(bool, std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `_GLOBAL__sub_I__Z26RemovingWeakNodesAndEdges2P10hashtable2iiiPmS1_': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o:(.data.rel.ro+0x0): undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_edge.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o:/usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::cerr' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o:/usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: more undefined references to `std::__throw_length_error(char const*)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:608: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:537: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:665: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:670: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:608: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:537: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:665: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:670: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:3925: undefined reference to `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:3925: undefined reference to `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::cerr' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:3925: undefined reference to `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `LoadingSparseKmerGraph2(hashtable2*, char*)': ././build_graph.cpp:760: undefined reference to `std::istream::read(char*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_graph.cpp:769: undefined reference to `std::istream::read(char*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_graph.cpp:778: undefined reference to `std::istream::read(char*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::~basic_ifstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:605: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::~basic_ifstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:605: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::resize(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1106: undefined reference to `std::__cxx11::basic_string, std::allocator >::resize(unsigned long, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::cout' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `get_sub_arr(unsigned long*, int, int, int, unsigned long*)': ././inc/seq_util.h:177: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/x86_64-linux-gnu/include/c++/12/ostream:620: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `get_sub_arr(unsigned long*, int, int, int, unsigned long*)': ././inc/seq_util.h:177: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:689: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/x86_64-linux-gnu/include/c++/12/ostream:711: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:90: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `LoadingSparseKmerGraph2(hashtable2*, char*)': ././build_graph.cpp:790: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `LoadingSparseKmerGraph2(hashtable2*, char*)': ././build_graph.cpp:790: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:539: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `_GLOBAL__sub_I__Z20run_process_threadedP10hashtable2PViiimiii': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_graph.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o:/usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: more undefined references to `operator delete(void*, unsigned long)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::_Rb_tree_iterator >::operator--()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:302: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::_Rb_tree_iterator >::operator++()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:287: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::_Rb_tree_iterator >::operator--()': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:302: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::__new_allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::_Rb_tree, std::_Select1st >, classcomp, std::allocator > >::_M_insert_node(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node >*)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:2384: undefined reference to `std::_Rb_tree_insert_and_rebalance(bool, std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `std::__new_allocator > >::deallocate(std::_Rb_tree_node >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `_GLOBAL__sub_I__Z12convert_kmerP7kmer_t2i': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/convert_soapdenovo.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.tcc:225: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned long&, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.tcc:225: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned long&, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::resize(unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1106: undefined reference to `std::__cxx11::basic_string, std::allocator >::resize(unsigned long, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2915: undefined reference to `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `run_io_thread_main(void*)': ././io_func.cpp:317: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2915: undefined reference to `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `run_io_thread_main(void*)': ././io_func.cpp:472: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2915: undefined reference to `std::__cxx11::basic_string, std::allocator >::find_last_of(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `run_io_thread_main(void*)': ././io_func.cpp:647: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:1437: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `run_io_thread_main(void*)': ././io_func.cpp:480: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././io_func.cpp:655: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././io_func.cpp:325: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:125: undefined reference to `std::__throw_bad_array_new_length()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned long, unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:393: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_istream >::basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ios >::basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_istream >::basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:607: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:535: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:537: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:665: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:670: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:3925: undefined reference to `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::__cxx11::basic_string, std::allocator >&, char)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::ctype::widen(char) const': /usr/x86_64-linux-gnu/include/c++/12/bits/locale_facets.h:884: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2657: undefined reference to `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2657: undefined reference to `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2657: undefined reference to `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find_first_of(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2826: undefined reference to `std::__cxx11::basic_string, std::allocator >::find_first_of(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2657: undefined reference to `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:2657: undefined reference to `std::__cxx11::basic_string, std::allocator >::find(char const*, unsigned long, unsigned long) const' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ifstream >::~basic_ifstream()': /usr/x86_64-linux-gnu/include/c++/12/fstream:605: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:254: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:257: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/streambuf:203: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:382: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >* std::__do_uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:123: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >* std::__do_uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:126: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:123: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/x86_64-linux-gnu/include/c++/12/fstream:539: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_istream >::~basic_istream()': /usr/x86_64-linux-gnu/include/c++/12/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_ios >::~basic_ios()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `read_lib(std::vector, std::allocator >, std::allocator, std::allocator > > >&, char*)': ././io_func.cpp:232: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: /usr/x86_64-linux-gnu/include/c++/12/fstream:255: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::allocate(unsigned long, void const*)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:137: undefined reference to `operator new(unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_check_len(unsigned long, char const*) const': /usr/x86_64-linux-gnu/include/c++/12/bits/stl_vector.h:1894: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/vector.tcc:498: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__cxx11::basic_string, std::allocator >::~basic_string()': /usr/x86_64-linux-gnu/include/c++/12/bits/basic_string.h:795: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_dispose()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/vector.tcc:506: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/x86_64-linux-gnu/include/c++/12/bits/vector.tcc:498: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `_GLOBAL__sub_I__Z8filter_NRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERi': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/io_func.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/multi_threads.o: in function `_GLOBAL__sub_I__Z10creatThrdsPmP9parameter': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/multi_threads.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `call_pregraph_sparse': ././pregraph_sparse.cpp:118: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././pregraph_sparse.cpp:119: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././pregraph_sparse.cpp:232: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././pregraph_sparse.cpp:233: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././pregraph_sparse.cpp:232: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o:././pregraph_sparse.cpp:233: more undefined references to `operator new[](unsigned long)' follow /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `call_pregraph_sparse': ././pregraph_sparse.cpp:217: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `call_pregraph_sparse': ././pregraph_sparse.cpp:321: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `call_pregraph_sparse': ././pregraph_sparse.cpp:320: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `call_pregraph_sparse': ././pregraph_sparse.cpp:216: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././pregraph_sparse.cpp:119: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `std::__new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `_GLOBAL__sub_I_call_pregraph_sparse': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/pregraph_sparse.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `build_preArc_threaded(preArc_array*, vertex_hash2*, int, int, std::vector, std::allocator >, std::allocator, std::allocator > > >*, int)': ././build_preArc.cpp:1047: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_preArc.cpp:1048: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `build_preArc_threaded(preArc_array*, vertex_hash2*, int, int, std::vector, std::allocator >, std::allocator, std::allocator > > >*, int)': ././build_preArc.cpp:1120: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `std::__new_allocator::deallocate(char*, unsigned long)': /usr/x86_64-linux-gnu/include/c++/12/bits/new_allocator.h:158: undefined reference to `operator delete(void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `build_preArc_threaded(preArc_array*, vertex_hash2*, int, int, std::vector, std::allocator >, std::allocator, std::allocator > > >*, int)': ././build_preArc.cpp:1121: undefined reference to `operator delete[](void*, unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_preArc.cpp:1047: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_preArc.cpp:1048: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: ././build_preArc.cpp:1048: undefined reference to `operator new[](unsigned long)' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `_GLOBAL__sub_I__Z16init_vertex_hashP12vertex_hash2m': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/build_preArc.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/global.o: in function `_GLOBAL__sub_I_NodeCovTh': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: sparsePregraph/global.o: in function `__static_initialization_and_destruction_0': /usr/x86_64-linux-gnu/include/c++/12/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: warning: creating DT_TEXTREL in a PIE collect2: error: ld returned 1 exit status make[1]: *** [Makefile:62: SOAPdenovo-63mer] Error 1 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc returned exit code 2 make: *** [debian/rules:14: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-04-21T23:45:16Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 9012 Build-Time: 113 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 49 Job: soapdenovo2_242+dfsg-3 Machine Architecture: arm64 Package: soapdenovo2 Package-Time: 195 Source-Version: 242+dfsg-3 Space: 9012 Status: attempted Version: 242+dfsg-3 -------------------------------------------------------------------------------- Finished at 2023-04-21T23:45:16Z Build needed 00:03:15, 9012k disk space