sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | soapsnp 1.03-3 (mips64el) Tue, 02 Jun 2020 14:35:22 +0000 | +==============================================================================+ Package: soapsnp Version: 1.03-3 Source Version: 1.03-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9df10c87-5606-4d0d-9db6-96f98f630c63' with '<>' I: NOTICE: Log filtering will replace 'build/soapsnp-CswOlw/resolver-OgtQFY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-02-0802.20.pdiff [11.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-02-0802.20.pdiff [11.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-02-0802.20.pdiff [9380 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-02-0802.20.pdiff [9380 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7924 kB] Fetched 8147 kB in 2s (5321 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libunistring2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 379 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libunistring2 amd64 0.9.10-4 [379 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 379 kB in 0s (6942 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'soapsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapsnp.git Please use: git clone https://salsa.debian.org/med-team/soapsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.4 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main soapsnp 1.03-3 (dsc) [1956 B] Get:2 http://debian.oregonstate.edu/debian unstable/main soapsnp 1.03-3 (tar) [38.2 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main soapsnp 1.03-3 (diff) [3292 B] Fetched 43.4 kB in 0s (685 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/soapsnp-CswOlw/soapsnp-1.03' with '<>' I: NOTICE: Log filtering will replace 'build/soapsnp-CswOlw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libboost-iostreams-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper (>= 11~), libboost-iostreams-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [421 B] Get:5 copy:/<>/apt_archive ./ Packages [509 B] Fetched 1887 B in 0s (72.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libboost-iostreams-dev:mips64el libboost-iostreams1.67-dev:mips64el libboost-iostreams1.67.0:mips64el libboost-regex1.67-dev:mips64el libboost-regex1.67.0:mips64el libboost1.67-dev:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu-dev:mips64el libicu63 libicu63:mips64el libicu67 libicu67:mips64el libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc:mips64el libboost-atomic1.67-dev:mips64el libboost-chrono1.67-dev:mips64el libboost-container1.67-dev:mips64el libboost-contract1.67-dev:mips64el libboost-date-time1.67-dev:mips64el libboost-exception1.67-dev:mips64el libboost-filesystem1.67-dev:mips64el libboost-graph1.67-dev:mips64el libboost-graph-parallel1.67-dev:mips64el libboost-locale1.67-dev:mips64el libboost-log1.67-dev:mips64el libboost-math1.67-dev:mips64el libboost-mpi1.67-dev:mips64el libboost-mpi-python1.67-dev:mips64el libboost-numpy1.67-dev:mips64el libboost-program-options1.67-dev:mips64el libboost-python1.67-dev:mips64el libboost-random1.67-dev:mips64el libboost-serialization1.67-dev:mips64el libboost-signals1.67-dev:mips64el libboost-stacktrace1.67-dev:mips64el libboost-system1.67-dev:mips64el libboost-test1.67-dev:mips64el libboost-thread1.67-dev:mips64el libboost-timer1.67-dev:mips64el libboost-type-erasure1.67-dev:mips64el libboost-wave1.67-dev:mips64el libboost1.67-tools-dev:mips64el libmpfrc++-dev:mips64el libntl-dev:mips64el glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el gnupg | gnupg2 git bzr icu-doc:mips64el libstdc++-9-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx libidn2-0:mips64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libboost-iostreams-dev:mips64el libboost-iostreams1.67-dev:mips64el libboost-iostreams1.67.0:mips64el libboost-regex1.67-dev:mips64el libboost-regex1.67.0:mips64el libboost1.67-dev:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu-dev:mips64el libicu63 libicu63:mips64el libicu67 libicu67:mips64el libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 131 MB of archives. After this operation, 664 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.2-1 [1315 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-1 [2807 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-1 [4011 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-1 [290 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.1.0-3 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-13 [197 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.34-5cross6 [2310 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.3.0-8cross1 [196 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6468 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.30-2cross1 [1327 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10-20200324-1cross1 [69.8 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10-20200324-1cross1 [87.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10-20200324-1cross1 [7388 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.3.0-8cross1 [248 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6825 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10-20200324-1cross1 [393 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.4.19-1cross1 [1166 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.30-2cross1 [2476 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.3.0-8cross1 [1726 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [7050 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-2 [8610 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 67.1-2 [199 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.1.0-3 [69.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.16-1 [95.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.30-8 [2554 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.1.0-3 [7484 B] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.1.0-3 [89.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-13 [248 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.1.0-3 [432 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.6.14-1 [1107 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.16-1 [118 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.30-8 [2476 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-13 [1735 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libboost1.67-dev mips64el 1.67.0-18 [8389 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libicu63 mips64el 63.2-3 [8187 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-regex1.67.0 mips64el 1.67.0-18 [473 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libicu67 mips64el 67.1-2 [8486 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libicu-dev mips64el 67.1-2 [9733 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-regex1.67-dev mips64el 1.67.0-18 [586 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-3 [47.4 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams1.67.0 mips64el 1.67.0-18 [247 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams1.67-dev mips64el 1.67.0-18 [259 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams-dev mips64el 1.67.0.2+b1 [4260 B] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 131 MB in 1s (119 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 10323 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.2-1_amd64.deb ... Unpacking man-db (2.9.2-1) ... 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Setting up cpp-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (10-20200324-1cross1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libgcc-s1-mips64el-cross (10-20200324-1cross1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mips64el (9.3.0-13) ... Setting up libatomic1-mips64el-cross (10-20200324-1cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-13) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-1) ... Setting up libc6-dev-mips64el-cross (2.30-2cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0042) ... Setting up g++-9 (9.3.0-13) ... Setting up libdpkg-perl (1.19.7) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (10-20200324-1cross1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libgcc-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libstdc++-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libdebhelper-perl (13.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up gcc-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up g++-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.16-1) ... Setting up libgcc-s1:mips64el (10.1.0-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.30-8) ... Setting up libcrypt-dev:mips64el (1:4.4.16-1) ... Setting up libc6-dev:mips64el (2.30-8) ... Setting up libbz2-1.0:mips64el (1.0.8-3) ... Setting up libstdc++6:mips64el (10.1.0-3) ... Setting up libicu67:mips64el (67.1-2) ... Setting up debhelper (13.1) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libgomp1:mips64el (10.1.0-3) ... Setting up libicu63:mips64el (63.2-3) ... Setting up libatomic1:mips64el (10.1.0-3) ... Setting up libboost-iostreams1.67.0:mips64el (1.67.0-18) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libicu-dev:mips64el (67.1-2) ... Setting up libboost-regex1.67.0:mips64el (1.67.0-18) ... Setting up libgcc-9-dev:mips64el (9.3.0-13) ... Setting up libstdc++-9-dev:mips64el (9.3.0-13) ... Setting up libboost1.67-dev:mips64el (1.67.0-18) ... Setting up libboost-regex1.67-dev:mips64el (1.67.0-18) ... Setting up libboost-iostreams1.67-dev:mips64el (1.67.0-18) ... Setting up libboost-iostreams-dev:mips64el (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-mips64el-cross_9.3.0-8cross1 libstdc++6_10.1.0-3 libstdc++6-mips64el-cross_10-20200324-1cross1 linux-libc-dev_5.6.14-1 Package versions: adduser_3.118 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-common_2.34-8 binutils-mips64el-linux-gnuabi64_2.34-5cross6 binutils-x86-64-linux-gnu_2.34-8 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-13 cpp-9-mips64el-linux-gnuabi64_9.3.0-8cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-13 g++-9-mips64el-linux-gnuabi64_9.3.0-8cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-3 gcc-10-cross-base-mipsen_10-20200324-1cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-13 gcc-9-base_9.3.0-13 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64-base_9.3.0-8cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.5 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13 libatomic1_10.1.0-3 libatomic1-mips64el-cross_10-20200324-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid1_2.35.2-2 libboost-iostreams-dev_1.67.0.2+b1 libboost-iostreams1.67-dev_1.67.0-18 libboost-iostreams1.67.0_1.67.0-18 libboost-regex1.67-dev_1.67.0-18 libboost-regex1.67.0_1.67.0-18 libboost1.67-dev_1.67.0-18 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-dev_2.30-8 libc6-dev-mips64el-cross_2.30-2cross1 libc6-mips64el-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10.1.0-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-2 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.1-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-13 libgcc-9-dev-mips64el-cross_9.3.0-8cross1 libgcc-s1_10.1.0-3 libgcc-s1-mips64el-cross_10-20200324-1cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-4 libgomp1_10.1.0-3 libgomp1-mips64el-cross_10-20200324-1cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu-dev_67.1-2 libicu63_63.2-3 libicu67_67.1-2 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapsnp Binary: soapsnp Architecture: any Version: 1.03-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://soap.genomics.org.cn/soapsnp.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/soapsnp Vcs-Git: https://salsa.debian.org/med-team/soapsnp.git Build-Depends: debhelper (>= 11~), libboost-iostreams-dev, zlib1g-dev Package-List: soapsnp deb science optional arch=any Checksums-Sha1: f151594b5984c3c44ef2b61cebb17e0d97a7576e 38151 soapsnp_1.03.orig.tar.gz 35cc98937804934620b81bbeca8b8d95710e9061 3292 soapsnp_1.03-3.debian.tar.xz Checksums-Sha256: 68aab997285c4fece0f2900eb89df90edc7d8596fd6bc637bd922bbc8563f6d0 38151 soapsnp_1.03.orig.tar.gz 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kfLqRzfOVhJ1cFv0wqKjXEHZuA+TyrOgxaeQ697qHFZz23oI8t2oKPL7iDQa6RAq q2L9enzpPFg= =Ih6M -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 13 07:49:45 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./soapsnp_1.03-3.dsc dpkg-source: info: extracting soapsnp in /<> dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9df10c87-5606-4d0d-9db6-96f98f630c63 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o soapsnp make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc make[1]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-3_mips64el.deb'. dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-3_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../soapsnp_1.03-3_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-06-02T14:36:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ soapsnp_1.03-3_mips64el.changes: -------------------------------- Format: 1.8 Date: Thu, 13 Dec 2018 08:45:52 +0100 Source: soapsnp Binary: soapsnp soapsnp-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.03-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: soapsnp - resequencing utility that can assemble consensus sequence of geno Closes: 916291 Changes: soapsnp (1.03-3) unstable; urgency=medium . * Team upload. * Build-Depends: zlib1g-dev Closes: #916291 Checksums-Sha1: 7411e60fbb9067f67cb818d1a49dbbaef796c754 474524 soapsnp-dbgsym_1.03-3_mips64el.deb 7ed461c45ac3d47f090c22df087e198adcb01b79 4851 soapsnp_1.03-3_mips64el.buildinfo c62e621f567ddc2375613bedd26607e6d6c5115c 47532 soapsnp_1.03-3_mips64el.deb Checksums-Sha256: 44adb04c1540aa86662257c7b22c8850ce87bd104056b436a76f8cc2fa292316 474524 soapsnp-dbgsym_1.03-3_mips64el.deb 5426d92b18704747fde5ff46b975d78c83d7d126925dc9c27f32c33fd502a40c 4851 soapsnp_1.03-3_mips64el.buildinfo 41d3095557e98e5a8c3e0853147b0edf19ec47710e4e673d33170497981954d4 47532 soapsnp_1.03-3_mips64el.deb Files: b36d0fc84114c1fb679f0bc8bfaf688c 474524 debug optional soapsnp-dbgsym_1.03-3_mips64el.deb 50d797003702b51b3050b3c989a1156a 4851 science optional soapsnp_1.03-3_mips64el.buildinfo 07ca0aeec443dddb5e8d436fbf3d0c2b 47532 science optional soapsnp_1.03-3_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: soapsnp Binary: soapsnp Architecture: mips64el Version: 1.03-3 Checksums-Md5: b36d0fc84114c1fb679f0bc8bfaf688c 474524 soapsnp-dbgsym_1.03-3_mips64el.deb 07ca0aeec443dddb5e8d436fbf3d0c2b 47532 soapsnp_1.03-3_mips64el.deb Checksums-Sha1: 7411e60fbb9067f67cb818d1a49dbbaef796c754 474524 soapsnp-dbgsym_1.03-3_mips64el.deb c62e621f567ddc2375613bedd26607e6d6c5115c 47532 soapsnp_1.03-3_mips64el.deb Checksums-Sha256: 44adb04c1540aa86662257c7b22c8850ce87bd104056b436a76f8cc2fa292316 474524 soapsnp-dbgsym_1.03-3_mips64el.deb 41d3095557e98e5a8c3e0853147b0edf19ec47710e4e673d33170497981954d4 47532 soapsnp_1.03-3_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 02 Jun 2020 14:36:18 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.35.2-2), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-13), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-13), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-3), gcc-9 (= 9.3.0-13), gcc-9-base (= 9.3.0-13), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), icu-devtools (= 67.1-2), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-13), libatomic1 (= 10.1.0-3), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-8), libblkid1 (= 2.35.2-2), libboost-iostreams-dev (= 1.67.0.2+b1), libboost-iostreams1.67-dev (= 1.67.0-18), libboost-iostreams1.67.0 (= 1.67.0-18), libboost-regex1.67-dev (= 1.67.0-18), libboost-regex1.67.0 (= 1.67.0-18), libboost1.67-dev (= 1.67.0-18), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.30-8), libc-dev-bin (= 2.30-8), libc6 (= 2.30-8), libc6-dev (= 2.30-8), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10.1.0-3), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-8), libctf0 (= 2.34-8), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.252), libdebhelper-perl (= 13.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libgcc-9-dev (= 9.3.0-13), libgcc-s1 (= 10.1.0-3), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.3-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10.1.0-3), libgpg-error0 (= 1.37-1), libicu-dev (= 67.1-2), libicu63 (= 63.2-3), libicu67 (= 67.1-2), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-3), liblsan0 (= 10.1.0-3), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.2-2), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.3-1), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-3), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-2), libstdc++-9-dev (= 9.3.0-13), libstdc++6 (= 10.1.0-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-3), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-3), libubsan1 (= 10.1.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 245.5-3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.35.2-2), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.6.14-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-1), man-db (= 2.9.2-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-1), perl-base (= 5.30.3-1), perl-modules-5.30 (= 5.30.3-1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1544687152" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ soapsnp-dbgsym_1.03-3_mips64el.deb ---------------------------------- new Debian package, version 2.0. size 474524 bytes: control archive=536 bytes. 371 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: soapsnp-dbgsym Source: soapsnp Version: 1.03-3 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 490 Depends: soapsnp (= 1.03-3) Section: debug Priority: optional Description: debug symbols for soapsnp Build-Ids: 966f1f1c56c64406842bbccfcbf4aecad4388b50 drwxr-xr-x root/root 0 2018-12-13 07:45 ./ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/lib/debug/.build-id/96/ -rw-r--r-- root/root 490792 2018-12-13 07:45 ./usr/lib/debug/.build-id/96/6f1f1c56c64406842bbccfcbf4aecad4388b50.debug drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/share/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-12-13 07:45 ./usr/share/doc/soapsnp-dbgsym -> soapsnp soapsnp_1.03-3_mips64el.deb --------------------------- new Debian package, version 2.0. size 47532 bytes: control archive=1268 bytes. 1513 bytes, 30 lines control 328 bytes, 5 lines md5sums Package: soapsnp Version: 1.03-3 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 113 Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Suggests: genomics.cn-soapsnp Section: science Priority: optional Homepage: http://soap.genomics.org.cn/soapsnp.html Description: resequencing utility that can assemble consensus sequence of genomes For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual. . SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). The program is a resequencing utility. It assembles the consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on a known reference. SNPs can then be identified on the consensus sequence through the comparison with the reference. . SOAPsnp uses a method based on Bayes' theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner (soap2). drwxr-xr-x root/root 0 2018-12-13 07:45 ./ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/bin/ -rwxr-xr-x root/root 99984 2018-12-13 07:45 ./usr/bin/soapsnp drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/share/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-13 07:45 ./usr/share/doc/soapsnp/ -rw-r--r-- root/root 289 2018-12-13 07:45 ./usr/share/doc/soapsnp/README.Debian -rw-r--r-- root/root 469 2018-12-13 07:45 ./usr/share/doc/soapsnp/changelog.Debian.gz -rw-r--r-- root/root 1152 2018-12-13 07:45 ./usr/share/doc/soapsnp/copyright -rw-r--r-- root/root 3733 2009-05-25 07:48 ./usr/share/doc/soapsnp/readme.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [548 B] Get:5 copy:/<>/apt_archive ./ Packages [640 B] Fetched 2151 B in 0s (84.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libclass-xsaccessor-perl : Depends: perl (< 5.30.3~) but 5.30.3-1 is to be installed E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 7924 Build-Time: 22 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 24 Job: soapsnp_1.03-3 Lintian: error Machine Architecture: amd64 Package: soapsnp Package-Time: 56 Source-Version: 1.03-3 Space: 7924 Status: successful Version: 1.03-3 -------------------------------------------------------------------------------- Finished at 2020-06-02T14:36:18Z Build needed 00:00:56, 7924k disk space