sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | spaln 2.4.0+dfsg-2 (armhf) Mon, 15 Jun 2020 04:17:07 +0000 | +==============================================================================+ Package: spaln Version: 2.4.0+dfsg-2 Source Version: 2.4.0+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5451de65-9d7c-4cec-9909-07f3946ab751' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-1xLAB7/resolver-pYfoSY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-14-0800.16.pdiff [4502 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-14-1401.44.pdiff [58.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-14-2000.12.pdiff [18.0 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-15-0200.27.pdiff [7203 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-14-0800.16.pdiff [4039 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-14-1401.44.pdiff [52.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-14-2000.12.pdiff [35.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-15-0200.27.pdiff [7203 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-15-0200.27.pdiff [10.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-15-0200.27.pdiff [10.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7977 kB] Fetched 8369 kB in 2s (5340 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 253 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgmp10 amd64 2:6.2.0+dfsg-6 [253 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 253 kB in 0s (17.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10322 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-6) over (2:6.2.0+dfsg-5) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-6) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spaln.git Please use: git clone https://salsa.debian.org/med-team/spaln.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 15.4 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.0+dfsg-2 (dsc) [2025 B] Get:2 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.0+dfsg-2 (tar) [15.4 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.0+dfsg-2 (diff) [3532 B] Fetched 15.4 MB in 0s (75.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/spaln-1xLAB7/spaln-2.4.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-1xLAB7' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1853 B in 0s (71.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-10-cross-base gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf gnupg | gnupg2 git bzr libstdc++-9-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx libidn2-0:armhf libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-10-cross-base gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 88.2 MB of archives. After this operation, 360 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.2-1 [1315 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.1.0-3 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-13 [197 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.34-8 [2750 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.3.0-13cross1 [197 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.3.0-13cross1 [6818 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.30-2cross1 [1111 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.1.0-3cross1 [36.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.1.0-3cross1 [82.4 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.1.0-3cross1 [6632 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.3.0-13cross1 [363 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.1.0-3cross1 [380 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.1.0-3cross1 [115 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.3.0-13cross1 [659 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.3.0-13cross1 [7180 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.4.19-1cross1 [1155 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.30-2cross1 [2118 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.3.0-13cross1 [1725 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.3.0-13cross1 [7406 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-2 [8610 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.1.0-3 [36.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.16-1 [101 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.30-8 [2343 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-13 [370 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.1.0-3 [6884 B] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.6.14-2 [1096 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.16-1 [120 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.30-8 [2136 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.1.0-3 [84.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.1.0-3 [420 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.1.0-3 [116 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-13 [662 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-13 [1756 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.2 MB in 1s (112 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 10322 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.2-1_amd64.deb ... Unpacking man-db (2.9.2-1) ... Selecting previously unselected package perl-modules-5.30. 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Setting up m4 (1.4.18-4) ... Setting up libatomic1-armhf-cross (10.1.0-3cross1) ... Setting up libasan5-armhf-cross (9.3.0-13cross1) ... Setting up perl (5.30.3-4) ... Setting up libstdc++6-armhf-cross (10.1.0-3cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libubsan1-armhf-cross (10.1.0-3cross1) ... Setting up ucf (3.0042) ... Setting up g++-9 (9.3.0-13) ... Setting up libdpkg-perl (1.19.7) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libgcc-9-dev-armhf-cross (9.3.0-13cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-9-arm-linux-gnueabihf (9.3.0-13cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.3.0-13cross1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-arm-linux-gnueabihf (9.3.0-13cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libcrypt1:armhf (1:4.4.16-1) ... Setting up libgcc-s1:armhf (10.1.0-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.30-8) ... Setting up libcrypt-dev:armhf (1:4.4.16-1) ... Setting up libc6-dev:armhf (2.30-8) ... Setting up libstdc++6:armhf (10.1.0-3) ... Setting up debhelper (13.1) ... Setting up libgomp1:armhf (10.1.0-3) ... Setting up libasan5:armhf (9.3.0-13) ... Setting up libatomic1:armhf (10.1.0-3) ... Setting up libubsan1:armhf (10.1.0-3) ... Setting up libgcc-9-dev:armhf (9.3.0-13) ... Setting up libstdc++-9-dev:armhf (9.3.0-13) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-armhf-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-armhf-cross_10.1.0-3cross1 linux-libc-dev_5.6.14-2 Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-arm-linux-gnueabihf_2.34-8 binutils-common_2.34-8 binutils-x86-64-linux-gnu_2.34-8 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-13 cpp-9-arm-linux-gnueabihf_9.3.0-13cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-13 g++-9-arm-linux-gnueabihf_9.3.0-13cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-3 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-13 gcc-9-arm-linux-gnueabihf_9.3.0-13cross1 gcc-9-arm-linux-gnueabihf-base_9.3.0-13cross1 gcc-9-base_9.3.0-13 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libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-2 linux-libc-dev_5.6.14-2 linux-libc-dev-armhf-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-3 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 util-linux_2.35.2-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spaln Binary: spaln, spaln-data Architecture: any all Version: 2.4.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/spaln Vcs-Git: https://salsa.debian.org/med-team/spaln.git Build-Depends: debhelper-compat (= 12) Package-List: spaln deb science optional arch=any spaln-data deb science optional arch=all Checksums-Sha1: 395c1c9605008c024c363bb8f7529087fb57e655 15359052 spaln_2.4.0+dfsg.orig.tar.xz acbe372ebed0a0d2398125a98f6ecb6efe156658 3532 spaln_2.4.0+dfsg-2.debian.tar.xz Checksums-Sha256: 0aae119ac10627cb8c53d5891a3786a68a1b3a041445fe2c01d249ad984b50fc 15359052 spaln_2.4.0+dfsg.orig.tar.xz 387f4913be2991c2eab2f4c2968e77722d67e799a362ed92e85418de049aa18e 3532 spaln_2.4.0+dfsg-2.debian.tar.xz Files: d28355f7efdd4df3db0d1fcb44634452 15359052 spaln_2.4.0+dfsg.orig.tar.xz 0537b5465cb0965c062f2cc97e12d450 3532 spaln_2.4.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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19:56:47 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spaln_2.4.0+dfsg-2.dsc dpkg-source: info: extracting spaln in /<> dpkg-source: info: unpacking spaln_2.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking spaln_2.4.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5451de65-9d7c-4cec-9909-07f3946ab751 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 2.4.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' [ -r src/Makefile ] && make -C src clean || true rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cd src && ./configure --exec_prefix=/usr/bin Checking for 64 bits compiler... use CXX=g++ CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto binaries install to /usr/bin tables install to /usr/share/spaln/table alndbs install to /usr/share/spaln/seqdb wrote Makefile wrote files OK. try make and make install. good luck! make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin -C src make[2]: Entering directory '/<>/src' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c spaln.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from spaln.c:25: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from spaln.c:29: blksrc.h:586:2: warning: extra ‘;’ [-Wpedantic] 586 | }; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c blksrc.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from blksrc.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from blksrc.c:25: blksrc.h:586:2: warning: extra ‘;’ [-Wpedantic] 586 | }; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c aln2.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from aln2.c:23: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c dbs.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from dbs.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c gaps.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gaps.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c codepot.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from codepot.c:26: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c divseq.c In file included from stdtype.h:34, from cmn.h:25, from divseq.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c gsinfo.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gsinfo.c:23: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c fwd2b1.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2b1.c:28: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c fwd2d1.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from fwd2d1.c:29: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c fwd2h1.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2h1.c:29: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c fwd2s1.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2s1.c:26: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c bitpat.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from bitpat.c:23: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c seq.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from seq.c:23: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ seq.c: In member function ‘Seq* Seq::aliaseq(Seq*, bool)’: seq.c:408:32: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Seq’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 408 | memcpy(dest, this, sizeof(Seq)); | ^ In file included from seq.c:23: seq.h:252:7: note: ‘class Seq’ declared here 252 | class Seq { | ^~~ seq.c: In member function ‘void Seq::seqalloc(int, int, bool)’: seq.c:477:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 477 | } catch (std::bad_alloc ba) { | ^~ seq.c: In member function ‘CHAR* Seq::seq_realloc()’: seq.c:499:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 499 | } catch (std::bad_alloc ba) { | ^~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c simmtx.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from simmtx.c:25: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c sqpr.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from divseq.h:26, from sqpr.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c utilseq.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from utilseq.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c vmf.c In file included from stdtype.h:34, from cmn.h:25, from vmf.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c wln.c In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from wln.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o ranlib sblib.a g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c clib.c In file included from clib.c:34: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c iolib.c In file included from iolib.c:33: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c mfile.c In file included from stdtype.h:34, from mfile.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c sets.c In file included from stdtype.h:34, from sets.c:22: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -c supprime.c In file included from stdtype.h:34, from supprime.c:13: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o ranlib clib.a g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -o sortgrcd sortgrcd.c sblib.a clib.a -lpthread -lm -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from sortgrcd.h:26, from sortgrcd.c:26: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -o makmdm makmdm.c clib.a -lpthread -lm -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makmdm.c:28: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ makmdm.c: In function ‘void exp_qdt(double (*)[20], double*, double, int)’: makmdm.c:396:15: warning: unused variable ‘q’ [-Wunused-variable] 396 | static double q[2][20][20] = { | ^ makmdm.c: At global scope: makmdm.c:396:15: warning: ‘q’ defined but not used [-Wunused-variable] g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -DM_THREAD=1 -o makdbs makdbs.c sblib.a clib.a -lpthread -lm -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makdbs.c:23: clib.h:957:51: warning: extra ‘;’ [-Wpedantic] 957 | inline double inverse(double x) {return (1. / x);}; | ^ make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/spaln.substvars rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make table_dir=/<>/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/debian/spaln//usr/bin -C src install make[2]: Entering directory '/<>/src' test -d /<>/debian/spaln//usr/bin || mkdir -p /<>/debian/spaln//usr/bin cp spaln sortgrcd makmdm makdbs /<>/debian/spaln//usr/bin test -d /<>/debian/spaln-data//usr/share/spaln/table || mkdir -p /<>/debian/spaln-data//usr/share/spaln/table ./makmdm /<>/debian/spaln-data//usr/share/spaln/table 7.6862 5.1057 4.2546 5.1269 2.0279 4.1061 6.1820 7.4714 2.2983 5.2569 9.1111 5.9498 2.3414 4.0530 5.0532 6.8225 5.8518 1.4336 3.2303 6.6374 Pam = 0 Norl fact = 106.899 trace = 106.899 Pam = 10 Norl fact = 13.996 trace = 41.995 Pam = 20 Norl fact = 15.588 trace = 45.299 Pam = 30 Norl fact = 16.894 trace = 47.531 Pam = 40 Norl fact = 18.094 trace = 49.266 Pam = 50 Norl fact = 19.249 trace = 50.701 Pam = 60 Norl fact = 20.386 trace = 51.928 Pam = 70 Norl fact = 21.522 trace = 52.997 Pam = 80 Norl fact = 22.667 trace = 53.943 Pam = 90 Norl fact = 23.828 trace = 54.788 Pam = 100 Norl fact = 25.012 trace = 55.547 Pam = 110 Norl fact = 26.222 trace = 56.234 Pam = 120 Norl fact = 27.462 trace = 56.858 Pam = 130 Norl fact = 28.735 trace = 57.427 Pam = 140 Norl fact = 30.044 trace = 57.946 Pam = 150 Norl fact = 31.391 trace = 58.421 Pam = 160 Norl fact = 32.778 trace = 58.858 Pam = 170 Norl fact = 34.208 trace = 59.259 Pam = 180 Norl fact = 35.683 trace = 59.629 Pam = 190 Norl fact = 37.204 trace = 59.970 Pam = 200 Norl fact = 38.774 trace = 60.286 Pam = 210 Norl fact = 40.394 trace = 60.580 Pam = 220 Norl fact = 42.066 trace = 60.854 Pam = 230 Norl fact = 43.793 trace = 61.110 Pam = 240 Norl fact = 45.577 trace = 61.350 Pam = 250 Norl fact = 47.419 trace = 61.576 Pam = 260 Norl fact = 49.322 trace = 61.791 Pam = 270 Norl fact = 51.287 trace = 61.996 Pam = 280 Norl fact = 53.318 trace = 62.191 Pam = 290 Norl fact = 55.415 trace = 62.380 Pam = 300 Norl fact = 57.582 trace = 62.563 test -d /<>/debian/spaln-data//usr/share/spaln/seqdb || mkdir -p /<>/debian/spaln-data//usr/share/spaln/seqdb make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_install -a install -d debian/.debhelper/generated/spaln install -d debian/.debhelper/generated/spaln-data dh_installdocs -a install -d debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./debian/README.Debian debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./doc/readme.html debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./doc/spalnData.txt debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./README.md debian/spaln/usr/share/doc/spaln chown -R 0:0 debian/spaln/usr/share/doc chmod -R u\+rw,go=rX debian/spaln/usr/share/doc install -p -m0644 debian/README.Debian debian/spaln/usr/share/doc/spaln/README.Debian install -p -m0644 debian/copyright debian/spaln/usr/share/doc/spaln/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/spaln/usr/share/doc/spaln/changelog.Debian dh_installman -a install -d debian/spaln/usr/share/man/man1/ install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1 install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1 man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 debian/spaln/usr/share/man/man1/spaln.1 mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1 chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1 debian/spaln/usr/share/man/man1/spaln.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/spaln chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 cd '/<>' dh_fixperms -a find debian/spaln -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -d debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -- debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln arm-linux-gnueabihf-objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug arm-linux-gnueabihf-objcopy: debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug: file format not recognized dh_dwz: error: arm-linux-gnueabihf-objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug returned exit code 1 make: *** [debian/rules:17: binary-arch] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-06-15T04:18:17Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 82340 Build-Time: 40 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 18 Job: spaln_2.4.0+dfsg-2 Machine Architecture: amd64 Package: spaln Package-Time: 70 Source-Version: 2.4.0+dfsg-2 Space: 82340 Status: attempted Version: 2.4.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-06-15T04:18:17Z Build needed 00:01:10, 82340k disk space