sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | spaln 2.4.1+dfsg-3 (mipsel) Wed, 16 Jun 2021 15:08:43 +0000 | +==============================================================================+ Package: spaln Version: 2.4.1+dfsg-3 Source Version: 2.4.1+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-852c51f8-76ca-4473-b52b-49a881421803' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-pgdWKB/resolver-T1OViN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [161 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-06-16-1401.40-F-2021-06-16-0801.38.pdiff [7237 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-06-16-1401.40-F-2021-06-16-0801.38.pdiff [4893 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-06-16-1401.40-F-2021-06-16-0801.38.pdiff [7237 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-06-16-1401.40-F-2021-06-16-0801.38.pdiff [4893 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8333 kB] Fetched 8634 kB in 9s (948 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spaln.git Please use: git clone https://salsa.debian.org/med-team/spaln.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.7 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.1+dfsg-3 (dsc) [2037 B] Get:2 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.1+dfsg-3 (tar) [19.7 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main spaln 2.4.1+dfsg-3 (diff) [4112 B] Fetched 19.7 MB in 0s (101 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/spaln-pgdWKB/spaln-2.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-pgdWKB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [410 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1865 B in 0s (76.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:mipsel libgcc-10-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev:mipsel libstdc++-10-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mipsel-linux-gnu gcc-10-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel gnupg git bzr krb5-doc:mipsel krb5-user:mipsel libstdc++-10-doc libstdc++-10-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mipsel libnss-nis:mipsel libnss-nisplus:mipsel libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:mipsel libgcc-10-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev:mipsel libstdc++-10-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 93.5 MB of archives. After this operation, 375 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-4 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-4 [4117 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-4 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.2.1-6 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.35.2-2cross2 [2359 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-12 [2346 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu-base amd64 10.2.1-6cross1 [202 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mipsel-linux-gnu amd64 10.2.1-6cross1 [6982 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:10.2.0-1 [16.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.1-6cross1 [197 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.31-11cross1 [1188 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10.2.1-6cross1 [46.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10.2.1-6cross1 [91.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10.2.1-6cross1 [6644 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mipsel-cross all 10.2.1-6cross1 [244 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu amd64 10.2.1-6cross1 [13.6 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10.2.1-6cross1 [397 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.10.28-1cross1 [1418 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.31-11cross1 [2022 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mipsel-cross all 10.2.1-6cross1 [1749 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mipsel-linux-gnu amd64 10.2.1-6cross1 [7653 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:10.2.0-1 [1180 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-3 [165 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.4 [1049 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.2.1-6 [46.2 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.18-4 [112 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.31-12 [2419 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.2.1-6 [6704 B] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.10.40-1 [1342 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.18-4 [131 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.46.2-2 [73.8 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.18.3-5 [64.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.18.3-5 [118 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1k-1 [1192 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.18.3-5 [335 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.18.3-5 [149 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc3 mipsel 1.3.1-1 [73.6 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc-dev mipsel 1.3.1-1 [196 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.31-12 [2012 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.2.1-6 [92.9 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-10-dev mipsel 10.2.1-6 [243 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.2.1-6 [437 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-10-dev mipsel 10.2.1-6 [1758 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.5 MB in 1s (121 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10487 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_amd64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-4_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4) ... 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Setting up file (1:5.39-3) ... Setting up gcc-10-mipsel-linux-gnu-base:amd64 (10.2.1-6cross1) ... Setting up gcc-10-base:mipsel (10.2.1-6) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up gcc-10-cross-base-mipsen (10.2.1-6cross1) ... Setting up binutils-mipsel-linux-gnu (2.35.2-2cross2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libgomp1-mipsel-cross (10.2.1-6cross1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-4) ... Setting up linux-libc-dev-mipsel-cross (5.10.28-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-12) ... Setting up libelf1:amd64 (0.183-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up cpp-10-mipsel-linux-gnu (10.2.1-6cross1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libc6-dev-mipsel-cross (2.31-11cross1) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-mipsel-cross (10.2.1-6cross1) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-mipsel-cross (10.2.1-6cross1) ... Setting up perl (5.32.1-4) ... Setting up libgcc-10-dev-mipsel-cross (10.2.1-6cross1) ... Setting up cpp-mipsel-linux-gnu (4:10.2.0-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-mipsel-linux-gnu (10.2.1-6cross1) ... Setting up libstdc++6-mipsel-cross (10.2.1-6cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++-10-dev-mipsel-cross (10.2.1-6cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-mipsel-linux-gnu (4:10.2.0-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up g++-10-mipsel-linux-gnu (10.2.1-6cross1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mipsel-linux-gnu (4:10.2.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.3.4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libcrypt1:mipsel (1:4.4.18-4) ... Setting up libgcc-s1:mipsel (10.2.1-6) ... Setting up libc6:mipsel (2.31-12) ... Setting up libcrypt-dev:mipsel (1:4.4.18-4) ... Setting up libstdc++6:mipsel (10.2.1-6) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up libssl1.1:mipsel (1.1.1k-1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libcom-err2:mipsel (1.46.2-2) ... Setting up libgomp1:mipsel (10.2.1-6) ... Setting up libkrb5support0:mipsel (1.18.3-5) ... Setting up libatomic1:mipsel (10.2.1-6) ... Setting up libk5crypto3:mipsel (1.18.3-5) ... Setting up libkrb5-3:mipsel (1.18.3-5) ... Setting up libgcc-10-dev:mipsel (10.2.1-6) ... Setting up libgssapi-krb5-2:mipsel (1.18.3-5) ... Setting up libtirpc3:mipsel (1.3.1-1) ... Setting up libtirpc-dev:mipsel (1.3.1-1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.31-12) ... Setting up libstdc++-10-dev:mipsel (10.2.1-6) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.31-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) amd64 (x86_64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mipsel-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-mipsel-cross_10.2.1-6cross1 linux-libc-dev_5.10.40-1 Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 bash_5.1-3 binutils_2.35.2-2 binutils-common_2.35.2-2 binutils-mipsel-linux-gnu_2.35.2-2cross2 binutils-x86-64-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-mipsel-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-mipsel-linux-gnu_4:10.2.0-1 cross-config_2.6.18+nmu1 crossbuild-essential-mipsel_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 fdisk_2.36.1-7 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-mipsel-linux-gnu_10.2.1-6cross1 g++-mipsel-linux-gnu_4:10.2.0-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base-mipsen_10.2.1-6cross1 gcc-10-mipsel-linux-gnu_10.2.1-6cross1 gcc-10-mipsel-linux-gnu-base_10.2.1-6cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-1 gcc-mipsel-linux-gnu_4:10.2.0-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan5_9.4.0-1 libasan6_10.2.1-6 libatomic1_10.2.1-6 libatomic1-mipsel-cross_10.2.1-6cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2 libblkid1_2.36.1-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-12 libc-dev-bin_2.31-12 libc6_2.31-12 libc6-dev_2.31-12 libc6-dev-mipsel-cross_2.31-11cross1 libc6-mipsel-cross_2.31-11cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.46.2-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.259 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.18+nmu1 libdpkg-perl_1.20.9 libelf1_0.183-3 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-7 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-mipsel-cross_10.2.1-6cross1 libgcc-s1_10.2.1-6 libgcc-s1-mipsel-cross_10.2.1-6cross1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6 libgomp1-mipsel-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-5 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-6 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-4 libpipeline1_1.5.3-1 libquadmath0_10.2.1-6 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-7 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mipsel-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-mipsel-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-5 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libuchardet0_0.0.7-1 libudev1_247.3-5 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libxml-libxml-perl_2.0134+dfsg-2+b1 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Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: spaln Binary: spaln, spaln-data Architecture: any all Version: 2.4.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/spaln Vcs-Git: https://salsa.debian.org/med-team/spaln.git Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: spaln deb science optional arch=any spaln-data deb science optional arch=all Checksums-Sha1: f58464a240ccd32adbc63aea9f87423fa4f42f74 19684856 spaln_2.4.1+dfsg.orig.tar.xz 93a46eb1d3ce903c78696e0e7b9ebc92d325595d 4112 spaln_2.4.1+dfsg-3.debian.tar.xz Checksums-Sha256: 06623ccee3583a4b91cba3cb814cbeba67dad962efe1e420fd4e1f3860bd89ff 19684856 spaln_2.4.1+dfsg.orig.tar.xz 49537833db0600a8a9f1c5ce6dfaad84cd562b6d29f33f0ad59ca2b5edf20565 4112 spaln_2.4.1+dfsg-3.debian.tar.xz Files: 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gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.7wYPg8U3/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 5 16:48:58 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spaln_2.4.1+dfsg-3.dsc dpkg-source: info: extracting spaln in /<> dpkg-source: info: unpacking spaln_2.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking spaln_2.4.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying portability.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-852c51f8-76ca-4473-b52b-49a881421803 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 2.4.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' [ -r src/Makefile ] && make -C src clean || true rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cd src && AR="mipsel-linux-gnu-ar rc" ./configure --exec_prefix=/usr/bin OK, CXX=mipsel-linux-gnu-g++ CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto 1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto binaries install to /usr/bin tables install to /usr/share/spaln/table alndbs install to /usr/share/spaln/seqdb wrote Makefile wrote files OK. try make and make install. good luck! make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin -C src make[2]: Entering directory '/<>/src' mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from spaln.cc:25: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from spaln.cc:25: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from blksrc.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from blksrc.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ blksrc.cc: In function ‘void idx2SeqLenStat(const char*, SeqLenStat&)’: blksrc.cc:1003:19: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | if (sls.maxv < widx->seqlen) sls.maxv = widx->seqlen; | ~~~~~~~~~^~~~~~~~~~~~~~ blksrc.cc: In member function ‘int SrchBlk::FindHsp(BPAIR*)’: blksrc.cc:2528:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘INT’ {aka ‘unsigned int’} [-Wsign-compare] 2528 | if (curgr - gener >= OutPrm.MaxOut - 1) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ blksrc.cc: In member function ‘int SrchBlk::TestOutput(int)’: blksrc.cc:2733:13: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 11 has type ‘int’ [-Wformat=] 2733 | printf(ofmt, query->sqname(), dir[d / 2], query->left, query->right, cid, p, q, | ^~~~ ...... 2736 | bh4->as[d][bh4->maxs[d]] - query->at(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int blksrc.cc:2733:13: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 12 has type ‘int’ [-Wformat=] mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from aln2.cc:23: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from aln2.cc:23: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from dbs.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from dbs.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ dbs.cc: In member function ‘Seq* Seq::getdbseq(DbsDt*, const char*, int, bool)’: dbs.cc:821:9: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 821 | if (n > record->seqlen) n = record->seqlen; | ~~^~~~~~~~~~~~~~~~ dbs.cc:826:9: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 826 | if (n == record->seqlen) break; | ~~^~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gaps.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from gaps.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from codepot.cc:26: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from codepot.cc:26: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc In file included from stdtype.h:34, from cmn.h:25, from divseq.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from divseq.h:26, from divseq.cc:23: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gsinfo.cc:23: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from gsinfo.cc:23: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2b1.cc:28: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2b1.cc:28: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from fwd2d1.cc:29: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from fwd2d1.cc:29: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2h1.cc:29: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2h1.cc:29: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2s1.cc:26: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2s1.cc:26: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from bitpat.cc:23: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from bitpat.cc:23: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from seq.cc:23: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from seq.cc:23: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ seq.cc: In member function ‘Seq* Seq::aliaseq(Seq*, bool)’: seq.cc:408:32: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Seq’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 408 | memcpy(dest, this, sizeof(Seq)); | ^ In file included from seq.cc:23: seq.h:252:7: note: ‘class Seq’ declared here 252 | class Seq { | ^~~ seq.cc: In member function ‘void Seq::seqalloc(int, int, bool)’: seq.cc:477:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 477 | } catch (std::bad_alloc ba) { | ^~ seq.cc: In member function ‘CHAR* Seq::seq_realloc()’: seq.cc:499:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 499 | } catch (std::bad_alloc ba) { | ^~ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from simmtx.cc:25: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from simmtx.cc:25: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from divseq.h:26, from sqpr.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from divseq.h:26, from sqpr.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from utilseq.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from utilseq.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc In file included from stdtype.h:34, from cmn.h:25, from vmf.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from wln.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from wln.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from boyer_moore.h:4, from boyer_moore.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from boyer_moore.h:4, from boyer_moore.cc:22: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ mipsel-linux-gnu-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o mipsel-linux-gnu-ranlib sblib.a mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc In file included from clib.cc:34: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc In file included from iolib.cc:33: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc In file included from stdtype.h:34, from mfile.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc In file included from stdtype.h:34, from sets.cc:22: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc In file included from stdtype.h:34, from supprime.cc:13: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ mipsel-linux-gnu-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o mipsel-linux-gnu-ranlib clib.a mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from sortgrcd.h:26, from sortgrcd.cc:26: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from sortgrcd.h:26, from sortgrcd.cc:26: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ sortgrcd.cc: In function ‘int count_record(const char*, const char*, size_t)’: sortgrcd.cc:994:11: warning: ISO C++ forbids variable length array ‘buf’ [-Wvla] 994 | char buf[rcdsize]; | ^~~ mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makmdm.cc:28: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from makmdm.cc:28: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ makmdm.cc: In function ‘void exp_qdt(double (*)[20], double*, double, int)’: makmdm.cc:396:15: warning: unused variable ‘q’ [-Wunused-variable] 396 | static double q[2][20][20] = { | ^ makmdm.cc: At global scope: makmdm.cc:396:15: warning: ‘q’ defined but not used [-Wunused-variable] mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makdbs.h:25, from makdbs.cc:24: clib.h:1076:51: warning: extra ‘;’ [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from makdbs.h:25, from makdbs.cc:24: codepot.h:171:2: warning: extra ‘;’ [-Wpedantic] 171 | }; | ^ make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/spaln.substvars rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make table_dir=/<>/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/debian/spaln//usr/bin -C src install make[2]: Entering directory '/<>/src' test -d /<>/debian/spaln//usr/bin || mkdir -p /<>/debian/spaln//usr/bin cp spaln sortgrcd makmdm makdbs /<>/debian/spaln//usr/bin test -d /<>/debian/spaln-data//usr/share/spaln/table || mkdir -p /<>/debian/spaln-data//usr/share/spaln/table ./makmdm /<>/debian/spaln-data//usr/share/spaln/table ./makmdm: 1: Syntax error: "(" unexpected make[2]: *** [Makefile:60: install] Error 2 make[2]: Leaving directory '/<>/src' make[1]: *** [debian/rules:29: override_dh_auto_install] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:20: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-06-16T15:10:12Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 111116 Build-Time: 52 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 19 Job: spaln_2.4.1+dfsg-3 Machine Architecture: amd64 Package: spaln Package-Time: 89 Source-Version: 2.4.1+dfsg-3 Space: 111116 Status: attempted Version: 2.4.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-06-16T15:10:12Z Build needed 00:01:29, 111116k disk space