sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | spaln 2.4.13f+dfsg-1 (s390x) Tue, 19 Dec 2023 02:15:31 +0000 | +==============================================================================+ Package: spaln Version: 2.4.13f+dfsg-1 Source Version: 2.4.13f+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-c2987270-3ca0-4ecd-92b0-3be668bcaf91' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-dEMRgE/resolver-dzcIT2' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main s390x Packages [9165 kB] Fetched 9165 kB in 1s (7648 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spaln.git Please use: git clone https://salsa.debian.org/med-team/spaln.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.7 MB of source archives. Get:1 http://localhost:3142/debian sid/main spaln 2.4.13f+dfsg-1 (dsc) [2209 B] Get:2 http://localhost:3142/debian sid/main spaln 2.4.13f+dfsg-1 (tar) [19.7 MB] Get:3 http://localhost:3142/debian sid/main spaln 2.4.13f+dfsg-1 (diff) [13.7 kB] Fetched 19.7 MB in 2s (8897 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/spaln-dEMRgE/spaln-2.4.13f+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-dEMRgE' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [726 B] Get:5 copy:/<>/apt_archive ./ Packages [769 B] Fetched 2104 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu72 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:s390x libnsl2:s390x libpipeline1 libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch g++-13-multilib-s390x-linux-gnu gcc-13-doc gcc-13-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x krb5-doc:s390x krb5-user:s390x libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl krb5-locales:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu72 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:s390x libnsl2:s390x libpipeline1 libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 84.8 MB of archives. After this operation, 326 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-2 [89.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main 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amd64 libgcc-13-dev-s390x-cross all 13.2.0-7cross2 [842 kB] Get:34 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu amd64 13.2.0-7cross2 [16.7 MB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:13.2.0-2 [1464 B] Get:36 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 6.5.8-1cross1 [2010 kB] Get:37 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.37-12cross1 [1383 kB] Get:38 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-s390x-cross all 13.2.0-7cross2 [2231 kB] Get:39 http://localhost:3142/debian sid/main amd64 g++-13-s390x-linux-gnu amd64 13.2.0-7cross2 [9379 kB] Get:40 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:13.2.0-2 [1176 B] Get:41 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:42 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:43 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libfile-homedir-perl all 1.006-2 [42.4 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:55 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:56 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.10 [3480 B] Get:57 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.8 [82.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:59 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:61 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:64 http://localhost:3142/debian 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http://localhost:3142/debian sid/main s390x linux-libc-dev s390x 6.5.13-1 [2034 kB] Get:77 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.36-2 [93.7 kB] Get:78 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.36-2 [122 kB] Get:79 http://localhost:3142/debian sid/main s390x libkrb5support0 s390x 1.20.1-5 [33.2 kB] Get:80 http://localhost:3142/debian sid/main s390x libcom-err2 s390x 1.47.0-2+b1 [19.9 kB] Get:81 http://localhost:3142/debian sid/main s390x libk5crypto3 s390x 1.20.1-5 [82.6 kB] Get:82 http://localhost:3142/debian sid/main s390x libkeyutils1 s390x 1.6.3-2 [8600 B] Get:83 http://localhost:3142/debian sid/main s390x libssl3 s390x 3.1.4-2 [1688 kB] Get:84 http://localhost:3142/debian sid/main s390x libkrb5-3 s390x 1.20.1-5 [325 kB] Get:85 http://localhost:3142/debian sid/main s390x libgssapi-krb5-2 s390x 1.20.1-5 [129 kB] Get:86 http://localhost:3142/debian sid/main s390x libtirpc3 s390x 1.3.4+ds-1 [79.1 kB] Get:87 http://localhost:3142/debian sid/main s390x libnsl2 s390x 1.3.0-3 [38.4 kB] Get:88 http://localhost:3142/debian sid/main s390x libtirpc-dev s390x 1.3.4+ds-1 [186 kB] Get:89 http://localhost:3142/debian sid/main s390x libnsl-dev s390x 1.3.0-3 [65.3 kB] Get:90 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.37-13 [1400 kB] Get:91 http://localhost:3142/debian sid/main s390x libgomp1 s390x 13.2.0-9 [126 kB] Get:92 http://localhost:3142/debian sid/main s390x libitm1 s390x 13.2.0-9 [26.9 kB] Get:93 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 13.2.0-9 [738 kB] Get:94 http://localhost:3142/debian sid/main s390x libubsan1 s390x 13.2.0-9 [991 kB] Get:95 http://localhost:3142/debian sid/main s390x libgcc-11-dev s390x 11.4.0-7 [692 kB] Get:96 http://localhost:3142/debian sid/main s390x libstdc++-11-dev s390x 11.4.0-7 [1944 kB] Get:97 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.3.dfsg-3 [85.8 kB] Get:98 http://localhost:3142/debian sid/main s390x zlib1g-dev s390x 1:1.3.dfsg-3 [916 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.8 MB in 0s (193 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14616 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.45-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2_amd64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14_amd64.deb ... Unpacking gettext-base (0.21-14) ... 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Preparing to unpack .../97-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:s390x (11.4.0-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:amd64 (72.1-4) ... Setting up binutils-s390x-linux-gnu (2.41.50.20231214-1) ... Setting up bsdextrautils (2.39.3-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.8) ... Setting up libc6-s390x-cross (2.37-12cross1) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up linux-libc-dev:s390x (6.5.13-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libyaml-perl (1.30-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (6.5.8-1cross1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:s390x (13.2.0-9) ... Setting up gcc-13-s390x-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up autopoint (0.21-14) ... Setting up libgcc-s1-s390x-cross (13.2.0-7cross2) ... Setting up autoconf (2.71-3) ... Setting up libitm1-s390x-cross (13.2.0-7cross2) ... Setting up sensible-utils (0.0.20) ... Setting up libc6-dev-s390x-cross (2.37-12cross1) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1) ... Setting up libgomp1-s390x-cross (13.2.0-7cross2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up libstdc++6-s390x-cross (13.2.0-7cross2) ... Setting up libatomic1-s390x-cross (13.2.0-7cross2) ... Setting up libasan8-s390x-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libubsan1-s390x-cross (13.2.0-7cross2) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-s390x-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-s390x-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.8) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-2) ... Setting up g++-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-s390x-linux-gnu (4:13.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-s390x (12.10) ... Setting up libgcc-s1:s390x (13.2.0-9) ... Setting up libc6:s390x (2.37-13) ... Setting up libstdc++6:s390x (13.2.0-9) ... Setting up libitm1:s390x (13.2.0-9) ... Setting up libkeyutils1:s390x (1.6.3-2) ... Setting up libssl3:s390x (3.1.4-2) ... Setting up zlib1g:s390x (1:1.3.dfsg-3) ... Setting up libcrypt1:s390x (1:4.4.36-2) ... Setting up libcom-err2:s390x (1.47.0-2+b1) ... Setting up libgomp1:s390x (13.2.0-9) ... Setting up libasan6:s390x (11.4.0-7) ... Setting up libkrb5support0:s390x (1.20.1-5) ... Setting up libatomic1:s390x (13.2.0-9) ... Setting up libk5crypto3:s390x (1.20.1-5) ... Setting up libubsan1:s390x (13.2.0-9) ... Setting up libgcc-11-dev:s390x (11.4.0-7) ... Setting up libcrypt-dev:s390x (1:4.4.36-2) ... Setting up libkrb5-3:s390x (1.20.1-5) ... Setting up libgssapi-krb5-2:s390x (1.20.1-5) ... Setting up libtirpc3:s390x (1.3.4+ds-1) ... Setting up libtirpc-dev:s390x (1.3.4+ds-1) ... Setting up libnsl2:s390x (1.3.0-3) ... Setting up libnsl-dev:s390x (1.3.0-3) ... Setting up libc6-dev:s390x (2.37-13) ... Setting up libstdc++-11-dev:s390x (11.4.0-7) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg-3) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in amd64 arm64 mips64el ppc64el s390x alpha ia64 kfreebsd-amd64 ppc64 riscv64 sparc64 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-s390x-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-s390x-cross_13.2.0-7cross2 linux-libc-dev_6.5.13-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231214-1 binutils-common_2.41.50.20231214-1 binutils-s390x-linux-gnu_2.41.50.20231214-1 binutils-x86-64-linux-gnu_2.41.50.20231214-1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-s390x-linux-gnu_13.2.0-7cross2 cpp-s390x-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-s390x_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-s390x-linux-gnu_13.2.0-7cross2 g++-s390x-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-13-s390x-linux-gnu_13.2.0-7cross2 gcc-13-s390x-linux-gnu-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-s390x-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-s390x-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-s390x-cross_13.2.0-7cross2 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231214-1 libblkid1_2.39.3-2 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-s390x-cross_2.37-12cross1 libc6-s390x-cross_2.37-12cross1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41.50.20231214-1 libctf0_2.41.50.20231214-1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-s390x-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-s390x-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-s390x-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231214-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.2.0-9 libitm1-s390x-cross_13.2.0-7cross2 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-9 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-3 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libquadmath0_13.2.0-9 libseccomp2_2.5.4-2+b1 libselinux1_3.5-1+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1 libsmartcols1_2.39.3-2 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-s390x-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-s390x-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255-1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libubsan1_13.2.0-9 libubsan1-s390x-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255-1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b1 libxxhash0_0.8.2-2 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.13-1 linux-libc-dev-s390x-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spaln Binary: spaln, spaln-data Architecture: amd64 arm64 mips64el ppc64el s390x alpha ia64 kfreebsd-amd64 ppc64 riscv64 sparc64 all Version: 2.4.13f+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/ogotoh/spaln Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/spaln Vcs-Git: https://salsa.debian.org/med-team/spaln.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: spaln deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,kfreebsd-amd64,ppc64,riscv64,sparc64 spaln-data deb science optional arch=all Checksums-Sha1: 72592af468ec7fc398781a1dfb1f24f2608d2267 19683708 spaln_2.4.13f+dfsg.orig.tar.xz 4a9d261024900d15608505bb8f4e3b175cfaaaa8 13668 spaln_2.4.13f+dfsg-1.debian.tar.xz Checksums-Sha256: 68fa7af1b32e9deee7a73d7e18a8772903f2668684c521cbed4201c509adeeb6 19683708 spaln_2.4.13f+dfsg.orig.tar.xz 8a06b3c82424874c50192392214a42144ebe55407bd94946b87fd5138b3d47e6 13668 spaln_2.4.13f+dfsg-1.debian.tar.xz Files: dbacf8e975b81adfbafa447436888436 19683708 spaln_2.4.13f+dfsg.orig.tar.xz 4fd531ebf9b66e95bdef1f809c8744b7 13668 spaln_2.4.13f+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgGTYOHHRpbGxlYUBy 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./spaln_2.4.13f+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting spaln in /<> dpkg-source: info: unpacking spaln_2.4.13f+dfsg.orig.tar.xz dpkg-source: info: unpacking spaln_2.4.13f+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying portability.patch dpkg-source: info: applying add_path_to_testscript.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.zJlSVZuwdG/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-c2987270-3ca0-4ecd-92b0-3be668bcaf91 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 2.4.13f+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # the configure script is not originated from autoconf and needs to be manually called cd src && AR="s390x-linux-gnu-ar rc" ./configure --exec_prefix=/usr/bin OK, CXX=s390x-linux-gnu-g++ CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic binaries install to /usr/bin tables install to /usr/share/spaln/table alndbs install to /usr/share/spaln/seqdb wrote Makefile wrote files OK. try make and make install. good luck! make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin cd src && make -j1 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/<>/src' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c eijunc.cc eijunc.cc: In member function ‘EiJuncSeq::EiJuncSeq(Eijmode, char const*, char const*, int)’: eijunc.cc:150:20: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 255 [-Wstringop-truncation] 150 | strncpy(genome, str, 8); | ^ eijunc.cc:154:16: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 255 [-Wstringop-truncation] 154 | strncpy(genspc, genome, 8); | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc seq.cc: In member function ‘Seq* Seq::aliaseq(Seq*, const bool&)’: seq.cc:411:15: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Seq’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 411 | memcpy(dest, this, sizeof(Seq)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from seq.cc:23: seq.h:226:7: note: ‘class Seq’ declared here 226 | class Seq { | ^~~ seq.cc: In function ‘void reportseq(Seq**, int)’: seq.cc:482:50: warning: format ‘%p’ expects argument of type ‘void*’, but argument 9 has type ‘int*’ [-Wformat=] 482 | printf("%d\t%d\t%d\t%d\t%d\t%d\t%p\t%p\n", i + 1, | ~^ | | | void* | %n 483 | sd->sid, sd->vrtl, sd->len, sd->area_, sd->did, sd->seq_, sd->lens); | ~~~~~~~~ | | | int* seq.cc: In member function ‘CHAR* Seq::seq_realloc()’: seq.cc:538:33: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 538 | } catch (std::bad_alloc ba) { | ^~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc In file included from /usr/s390x-linux-gnu/include/string.h:535, from adddef.h:30, from stdtype.h:33, from cmn.h:25, from seq.h:25, from utilseq.cc:22: In function ‘memset’, inlined from ‘vclear(float*, int)void’ at clib.h:104:8, inlined from ‘ExinPot::calcScr_3(Seq const*, float*) const’ at utilseq.cc:1457:8: /usr/s390x-linux-gnu/include/bits/string_fortified.h:59:33: warning: ‘memset’ writing 20 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ utilseq.cc: In member function ‘ExinPot::calcScr_3(Seq const*, float*) const’: utilseq.cc:1430:39: note: at offset -20 into destination object of size [0, 8589934588] allocated by ‘operator new[](unsigned long)’ 1430 | float* result = new float[len]; | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc s390x-linux-gnu-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o eijunc.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o s390x-linux-gnu-ranlib sblib.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc s390x-linux-gnu-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o s390x-linux-gnu-ranlib clib.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now spaln.cc: In function ‘blkaln.isra’: spaln.cc:801:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 801 | Gsinfo* GsI = new Gsinfo[nparalog + 1]; | ^ /usr/s390x-linux-gnu/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now sortgrcd.cc: In function ‘int count_record(const char*, const char*, size_t)’: sortgrcd.cc:997:25: warning: ISO C++ forbids variable length array ‘buf’ [-Wvla] 997 | char buf[rcdsize]; | ^~~ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now makmdm.cc: In function ‘void exp_qdt(double (*)[20], double*, double, int)’: makmdm.cc:395:15: warning: unused variable ‘q’ [-Wunused-variable] 395 | static double q[2][20][20] = { | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pedantic -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src rm -f -- debian/spaln.substvars rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ rm -f debian/spaln.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- table_dir=/<>/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/debian/spaln//usr/bin install -m0755 -d /<>/spaln-2.4.13f\+dfsg/debian/tmp cd src && make -j1 install DESTDIR=/<>/spaln-2.4.13f\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/<>/spaln-2.4.13f\+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/spaln-2.4.13f\+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/spaln-2.4.13f\+dfsg/debian/spaln//usr/bin make[2]: Entering directory '/<>/src' test -d /<>/debian/spaln//usr/bin || mkdir -p /<>/debian/spaln//usr/bin cp spaln sortgrcd makmdm makdbs /<>/debian/spaln//usr/bin test -d /<>/debian/spaln-data//usr/share/spaln/table || mkdir -p /<>/debian/spaln-data//usr/share/spaln/table ./makmdm /<>/debian/spaln-data//usr/share/spaln/table ./makmdm: 1: Syntax error: "(" unexpected make[2]: *** [Makefile:60: install] Error 2 make[2]: Leaving directory '/<>/src' dh_auto_install: error: cd src && make -j1 install DESTDIR=/<>/spaln-2.4.13f\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/<>/spaln-2.4.13f\+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/spaln-2.4.13f\+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/spaln-2.4.13f\+dfsg/debian/spaln//usr/bin returned exit code 2 make[1]: *** [debian/rules:34: override_dh_auto_install] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:24: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-12-19T02:17:14Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 129144 Build-Time: 79 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 11 Job: spaln_2.4.13f+dfsg-1 Machine Architecture: amd64 Package: spaln Package-Time: 103 Source-Version: 2.4.13f+dfsg-1 Space: 129144 Status: attempted Version: 2.4.13f+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-12-19T02:17:14Z Build needed 00:01:43, 129144k disk space