sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | spaln 2.4.9a+dfsg-2 (arm64) Sat, 01 Oct 2022 02:37:07 +0000 | +==============================================================================+ Package: spaln Version: 2.4.9a+dfsg-2 Source Version: 2.4.9a+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-0970713b-020c-4b29-a7bd-add3f20c025e' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-uomSRz/resolver-xgwaNz' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main arm64 Packages [9200 kB] Fetched 9200 kB in 1s (6301 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spaln.git Please use: git clone https://salsa.debian.org/med-team/spaln.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.7 MB of source archives. Get:1 http://localhost:3142/debian sid/main spaln 2.4.9a+dfsg-2 (dsc) [2203 B] Get:2 http://localhost:3142/debian sid/main spaln 2.4.9a+dfsg-2 (tar) [19.7 MB] Get:3 http://localhost:3142/debian sid/main spaln 2.4.9a+dfsg-2 (diff) [5736 B] Fetched 19.7 MB in 1s (15.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/spaln-uomSRz/spaln-2.4.9a+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spaln-uomSRz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [501 B] Fetched 1869 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 96.2 MB of archives. After this operation, 396 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1 [145 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:12 http://localhost:3142/debian sid/main 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cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-3cross2 [204 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.35-1cross1 [1216 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 12.2.0-3cross2 [35.1 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 12.2.0-3cross2 [102 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 12.2.0-3cross2 [23.5 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 12.2.0-3cross2 [9304 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 12.2.0-3cross2 [2096 kB] Get:31 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 12.2.0-3cross2 [926 kB] Get:32 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 12.2.0-3cross2 [2179 kB] Get:33 http://localhost:3142/debian sid/main amd64 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libyaml-perl all 1.30-1 [67.7 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:60 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.9.1 [196 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:66 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:67 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:68 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:69 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:70 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:71 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://localhost:3142/debian sid/main amd64 debhelper all 13.9.1 [1071 kB] Get:73 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.3.0-6 [209 kB] Get:74 http://localhost:3142/debian sid/main arm64 gcc-12-base arm64 12.2.0-3 [208 kB] Get:75 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 12.2.0-3 [35.1 kB] Get:76 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.35-1 [2523 kB] Get:77 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.3.0-6 [1950 kB] Get:78 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 12.2.0-3 [9528 B] Get:79 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 5.19.11-1 [1615 kB] Get:80 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.28-2 [90.8 kB] Get:81 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.28-2 [122 kB] Get:82 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.46.6~rc1-1 [75.7 kB] Get:83 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20-1 [65.0 kB] Get:84 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20-1 [113 kB] Get:85 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-1 [15.7 kB] Get:86 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.5-4 [1816 kB] Get:87 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20-1 [346 kB] Get:88 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20-1 [157 kB] Get:89 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.3+ds-1 [80.9 kB] Get:90 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:91 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.3+ds-1 [194 kB] Get:92 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:93 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.35-1 [1625 kB] Get:94 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 12.2.0-3 [104 kB] Get:95 http://localhost:3142/debian sid/main arm64 libitm1 arm64 12.2.0-3 [23.9 kB] Get:96 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 12.2.0-3 [927 kB] Get:97 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.3.0-6 [1958 kB] Get:98 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 12.2.0-3 [557 kB] Get:99 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 12.2.0-3 [862 kB] Get:100 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 12.2.0-3 [998 kB] Get:101 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.3.0-6 [927 kB] Get:102 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.3.0-6 [1925 kB] Get:103 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.2.11.dfsg-4.1 [89.0 kB] Get:104 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-4.1 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.2 MB in 1s (184 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13651 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-9_amd64.deb ... Unpacking gettext-base (0.21-9) ... 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Setting up libdebhelper-perl (13.9.1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:arm64 (5.19.11-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up binutils-aarch64-linux-gnu (2.39-4) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:arm64 (12.2.0-3) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libc6-arm64-cross (2.35-1cross1) ... Setting up autopoint (0.21-9) ... Setting up libitm1-arm64-cross (12.2.0-3cross2) ... Setting up autoconf (2.71-2) ... Setting up linux-libc-dev-arm64-cross (5.19.6-1cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libgcc-s1-arm64-cross (12.2.0-3cross2) ... Setting up libatomic1-arm64-cross (12.2.0-3cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up liblsan0-arm64-cross (12.2.0-3cross2) ... Setting up libgomp1-arm64-cross (12.2.0-3cross2) ... Setting up gettext (0.21-9) ... Setting up cpp-12-aarch64-linux-gnu (12.2.0-3cross2) ... Setting up libtool (2.4.7-4) ... Setting up libhwasan0-arm64-cross (12.2.0-3cross2) ... Setting up libc6-dev-arm64-cross (2.35-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-arm64-cross (12.2.0-3cross2) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:12.2.0-1) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up libasan8-arm64-cross (12.2.0-3cross2) ... Setting up libtsan2-arm64-cross (12.2.0-3cross2) ... Setting up libubsan1-arm64-cross (12.2.0-3cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up libgcc-12-dev-arm64-cross (12.2.0-3cross2) ... Setting up gcc-12-aarch64-linux-gnu (12.2.0-3cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up gcc-aarch64-linux-gnu (4:12.2.0-1) ... Setting up debhelper (13.9.1) ... Setting up libstdc++-12-dev-arm64-cross (12.2.0-3cross2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-aarch64-linux-gnu (12.2.0-3cross2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:12.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (12.2.0-3) ... Setting up libc6:arm64 (2.35-1) ... Setting up libhwasan0:arm64 (12.2.0-3) ... Setting up libstdc++6:arm64 (12.2.0-3) ... Setting up liblsan0:arm64 (12.2.0-3) ... Setting up libitm1:arm64 (12.2.0-3) ... Setting up libtsan0:arm64 (11.3.0-6) ... Setting up libkeyutils1:arm64 (1.6.3-1) ... Setting up libssl3:arm64 (3.0.5-4) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:arm64 (1:4.4.28-2) ... Setting up libcom-err2:arm64 (1.46.6~rc1-1) ... Setting up libgomp1:arm64 (12.2.0-3) ... Setting up libasan6:arm64 (11.3.0-6) ... Setting up libkrb5support0:arm64 (1.20-1) ... Setting up libatomic1:arm64 (12.2.0-3) ... Setting up libk5crypto3:arm64 (1.20-1) ... Setting up libubsan1:arm64 (12.2.0-3) ... Setting up libgcc-11-dev:arm64 (11.3.0-6) ... Setting up libcrypt-dev:arm64 (1:4.4.28-2) ... Setting up libkrb5-3:arm64 (1.20-1) ... Setting up libgssapi-krb5-2:arm64 (1.20-1) ... Setting up libtirpc3:arm64 (1.3.3+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.3+ds-1) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.35-1) ... Setting up libstdc++-11-dev:arm64 (11.3.0-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-4.1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.35-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in amd64 arm64 mips64el ppc64el s390x alpha ia64 kfreebsd-amd64 ppc64 riscv64 sparc64 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-4 dpkg-dev_1.21.9 g++-11_11.3.0-6 g++-12_12.2.0-3 gcc-11_11.3.0-6 gcc-12_12.2.0-3 libc6-dev_2.35-1 libstdc++-11-dev_11.3.0-6 libstdc++-12-dev_12.2.0-3 libstdc++-12-dev-arm64-cross_12.2.0-3cross2 libstdc++6_12.2.0-3 libstdc++6-arm64-cross_12.2.0-3cross2 linux-libc-dev_5.19.11-1 Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.1 bash_5.2-1 binutils_2.39-4 binutils-aarch64-linux-gnu_2.39-4 binutils-common_2.39-4 binutils-x86-64-linux-gnu_2.39-4 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-6 cpp-12_12.2.0-3 cpp-12-aarch64-linux-gnu_12.2.0-3cross2 cpp-aarch64-linux-gnu_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-6 g++-12_12.2.0-3 g++-12-aarch64-linux-gnu_12.2.0-3cross2 g++-aarch64-linux-gnu_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-6 gcc-11-base_11.3.0-6 gcc-12_12.2.0-3 gcc-12-aarch64-linux-gnu_12.2.0-3cross2 gcc-12-aarch64-linux-gnu-base_12.2.0-3cross2 gcc-12-base_12.2.0-3 gcc-12-cross-base_12.2.0-3cross2 gcc-9-base_9.5.0-2+b1 gcc-aarch64-linux-gnu_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.39-1 grep_3.8-2 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan6_11.3.0-6 libasan8_12.2.0-3 libasan8-arm64-cross_12.2.0-3cross2 libatomic1_12.2.0-3 libatomic1-arm64-cross_12.2.0-3cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-4 libblkid1_2.38.1-1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.35-1 libc-dev-bin_2.35-1 libc6_2.35-1 libc6-arm64-cross_2.35-1cross1 libc6-dev_2.35-1 libc6-dev-arm64-cross_2.35-1cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-3 libcom-err2_1.46.6~rc1-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-4 libctf0_2.39-4 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.9 libelf1_0.187-4 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.3-2 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-6 libgcc-12-dev_12.2.0-3 libgcc-12-dev-arm64-cross_12.2.0-3cross2 libgcc-s1_12.2.0-3 libgcc-s1-arm64-cross_12.2.0-3cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-3 libgomp1-arm64-cross_12.2.0-3cross2 libgpg-error0_1.45-2 libgprofng0_2.39-4 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-3 libhwasan0-arm64-cross_12.2.0-3cross2 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-3 libitm1-arm64-cross_12.2.0-3cross2 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-3 liblsan0-arm64-cross_12.2.0-3cross2 liblz4-1_1.9.4-1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libquadmath0_12.2.0-3 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libss2_1.46.6~rc1-1 libssl3_3.0.5-4 libstdc++-11-dev_11.3.0-6 libstdc++-12-dev_12.2.0-3 libstdc++-12-dev-arm64-cross_12.2.0-3cross2 libstdc++6_12.2.0-3 libstdc++6-arm64-cross_12.2.0-3cross2 libsub-override-perl_0.09-3 libsystemd0_251.4-3 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-6 libtsan2_12.2.0-3 libtsan2-arm64-cross_12.2.0-3cross2 libubsan1_12.2.0-3 libubsan1-arm64-cross_12.2.0-3cross2 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.11-1 linux-libc-dev-arm64-cross_5.19.6-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.6~rc1-1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 usrmerge_32 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spaln Binary: spaln, spaln-data Architecture: amd64 arm64 mips64el ppc64el s390x alpha ia64 kfreebsd-amd64 ppc64 riscv64 sparc64 all Version: 2.4.9a+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/ogotoh/spaln Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/spaln Vcs-Git: https://salsa.debian.org/med-team/spaln.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: spaln deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,kfreebsd-amd64,ppc64,riscv64,sparc64 spaln-data deb science optional arch=all Checksums-Sha1: b4f7ae3be8af2b2e5918a60628556d24f2220005 19683304 spaln_2.4.9a+dfsg.orig.tar.xz 26a15496851b8ba54b112a46a12e5f804c4ffb9f 5736 spaln_2.4.9a+dfsg-2.debian.tar.xz Checksums-Sha256: 912b0a0c93859d97d3cdba05746869b13c9a18dd7e5194b995b012e46a3b297a 19683304 spaln_2.4.9a+dfsg.orig.tar.xz c428a872c75146f2f39c5f65035766ba413de4ce753e27995b49b9eaedbfa687 5736 spaln_2.4.9a+dfsg-2.debian.tar.xz Files: e4cbb6f14f5616d0d031f842d8f6a72f 19683304 spaln_2.4.9a+dfsg.orig.tar.xz 7c503426a6c616a594e61730ffe7e05c 5736 spaln_2.4.9a+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1npARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtENsw//dG8WUc5RvTmkVFYa6TcKNlwCn2YNdli/ tuUjp9uGWIy0X+99Y8oS4b202cgxZgIShO5eKIYotVr/Vzu3fLVrhz79+ZSodoax ZKdEbIIvjdjQxRKQRamAJDHtQ8Mt6uuy072RdCYegAZdsolvZypww2dC49XfJxOH 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in /<> dpkg-source: info: unpacking spaln_2.4.9a+dfsg.orig.tar.xz dpkg-source: info: unpacking spaln_2.4.9a+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying portability.patch dpkg-source: info: applying add_path_to_testscript.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-0970713b-020c-4b29-a7bd-add3f20c025e SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 2.4.9a+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true install -d /<>/spaln-2.4.9a\+dfsg/debian/.debhelper/generated/_source/home rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # the configure script is not originated from autoconf and needs to be manually called cd src && AR="aarch64-linux-gnu-ar rc" ./configure --exec_prefix=/usr/bin OK, CXX=aarch64-linux-gnu-g++ CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto binaries install to /usr/bin tables install to /usr/share/spaln/table alndbs install to /usr/share/spaln/seqdb wrote Makefile wrote files OK. try make and make install. good luck! make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin install -d /<>/spaln-2.4.9a\+dfsg/debian/.debhelper/generated/_source/home cd src && make -j1 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c eijunc.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc seq.cc: In member function ‘Seq* Seq::aliaseq(Seq*, const bool&)’: seq.cc:411:15: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Seq’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 411 | memcpy(dest, this, sizeof(Seq)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from seq.cc:23: seq.h:226:7: note: ‘class Seq’ declared here 226 | class Seq { | ^~~ seq.cc: In function ‘void reportseq(Seq**, int)’: seq.cc:482:50: warning: format ‘%p’ expects argument of type ‘void*’, but argument 9 has type ‘int*’ [-Wformat=] 482 | printf("%d\t%d\t%d\t%d\t%d\t%d\t%p\t%p\n", i + 1, | ~^ | | | void* | %n 483 | sd->sid, sd->vrtl, sd->len, sd->area_, sd->did, sd->seq_, sd->lens); | ~~~~~~~~ | | | int* seq.cc: In member function ‘void Seq::seqalloc(const int&, const int&, const bool&)’: seq.cc:516:33: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 516 | } catch (std::bad_alloc ba) { | ^~ seq.cc: In member function ‘CHAR* Seq::seq_realloc()’: seq.cc:538:33: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 538 | } catch (std::bad_alloc ba) { | ^~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc aarch64-linux-gnu-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o eijunc.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o aarch64-linux-gnu-ranlib sblib.a aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc aarch64-linux-gnu-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o aarch64-linux-gnu-ranlib clib.a aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -flto lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information spaln.cc: In function ‘blkaln.constprop’: spaln.cc:797:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 797 | Gsinfo* GsI = new Gsinfo[nparalog + 1]; | ^ /usr/aarch64-linux-gnu/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -flto sortgrcd.cc: In function ‘int count_record(const char*, const char*, size_t)’: sortgrcd.cc:997:25: warning: ISO C++ forbids variable length array ‘buf’ [-Wvla] 997 | char buf[rcdsize]; | ^~~ lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -flto makmdm.cc: In function ‘void exp_qdt(double (*)[20], double*, double, int)’: makmdm.cc:395:15: warning: unused variable ‘q’ [-Wunused-variable] 395 | static double q[2][20][20] = { | ^ makmdm.cc: At global scope: makmdm.cc:395:15: warning: ‘q’ defined but not used [-Wunused-variable] aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -flto make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src rm -f -- debian/spaln.substvars rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ rm -f debian/spaln.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- table_dir=/<>/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/debian/spaln//usr/bin install -d /<>/spaln-2.4.9a\+dfsg/debian/tmp cd src && make -j1 install DESTDIR=/<>/spaln-2.4.9a\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/<>/spaln-2.4.9a\+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/spaln-2.4.9a\+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/spaln-2.4.9a\+dfsg/debian/spaln//usr/bin make[2]: Entering directory '/<>/src' test -d /<>/debian/spaln//usr/bin || mkdir -p /<>/debian/spaln//usr/bin cp spaln sortgrcd makmdm makdbs /<>/debian/spaln//usr/bin test -d /<>/debian/spaln-data//usr/share/spaln/table || mkdir -p /<>/debian/spaln-data//usr/share/spaln/table ./makmdm /<>/debian/spaln-data//usr/share/spaln/table ./makmdm: 3: Syntax error: Unterminated quoted string make[2]: *** [Makefile:60: install] Error 2 make[2]: Leaving directory '/<>/src' dh_auto_install: error: cd src && make -j1 install DESTDIR=/<>/spaln-2.4.9a\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/<>/spaln-2.4.9a\+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<>/spaln-2.4.9a\+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<>/spaln-2.4.9a\+dfsg/debian/spaln//usr/bin returned exit code 2 make[1]: *** [debian/rules:30: override_dh_auto_install] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:20: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-10-01T02:38:11Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 113208 Build-Time: 41 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 12 Job: spaln_2.4.9a+dfsg-2 Machine Architecture: amd64 Package: spaln Package-Time: 64 Source-Version: 2.4.9a+dfsg-2 Space: 113208 Status: attempted Version: 2.4.9a+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-10-01T02:38:11Z Build needed 00:01:04, 113208k disk space