sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | stacks 2.41+dfsg-1 (mips64el) Wed, 28 Aug 2019 06:25:19 +0000 | +==============================================================================+ Package: stacks Version: 2.41+dfsg-1 Source Version: 2.41+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-36e3ca5e-fb2e-496f-910f-92011e18acb1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-27-0813.12.pdiff [9499 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-27-1422.21.pdiff [14.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-27-2037.45.pdiff [12.0 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-28-0212.23.pdiff [27.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-27-0813.12.pdiff [63.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-27-1422.21.pdiff [73.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-27-2037.45.pdiff [39.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-28-0212.23.pdiff [63.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-28-0212.23.pdiff [27.1 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-28-0212.23.pdiff [63.1 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7985 kB] Fetched 8483 kB in 2s (4515 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/stacks.git Please use: git clone https://salsa.debian.org/med-team/stacks.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 393 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (dsc) [2034 B] Get:2 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (tar) [384 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (diff) [7116 B] Fetched 393 kB in 0s (8233 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/stacks-Vohv4l/stacks-2.41+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-Vohv4l' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HMxQg1/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-HMxQg1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HMxQg1/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-HMxQg1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HMxQg1/apt_archive ./ Sources [364 B] Get:5 copy:/<>/resolver-HMxQg1/apt_archive ./ Packages [454 B] Fetched 1775 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-9-cross-base gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sensible-utils ucf Suggested packages: binutils-doc gcc-9-locales cpp-doc binutils-multiarch g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-doc libstdc++6-9-dbg-mips64el-cross gcc-9-multilib-mips64el-linux-gnuabi64 libgcc1-dbg-mips64el-cross libgomp1-dbg-mips64el-cross libitm1-dbg-mips64el-cross libatomic1-dbg-mips64el-cross libasan5-dbg-mips64el-cross liblsan0-dbg-mips64el-cross libtsan0-dbg-mips64el-cross libubsan1-dbg-mips64el-cross libquadmath0-dbg-mips64el-cross manpages-dev autoconf automake libtool flex bison gdb-mips64el-linux-gnuabi64 gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-9-cross-base gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sbuild-build-depends-core-dummy:mips64el sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 41.1 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HMxQg1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [880 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.32.51.20190821-2 [2286 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-4cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [6460 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [16.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-4cross1 [188 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.28-10cross6 [1392 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-4cross1 [69.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-4cross1 [76.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-4cross1 [7472 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.2.1-4cross1 [247 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [6790 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [1472 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.2.1-4cross1 [396 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.2.9-2cross6 [1323 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.28-10cross6 [2513 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.2.1-4cross1 [1720 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [7037 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [1184 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.7 [6612 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.1 MB in 1s (64.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13052 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-4cross1) ... Setting up libc6-mips64el-cross (2.28-10cross6) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.32.51.20190821-2) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-9-cross-base (9.2.1-4cross1) ... Setting up sensible-utils (0.0.12) ... Setting up linux-libc-dev-mips64el-cross (5.2.9-2cross6) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libgomp1-mips64el-cross (9.2.1-4cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-mips64el-cross (9.2.1-4cross1) ... Setting up libgcc1-mips64el-cross (1:9.2.1-4cross1) ... Setting up libc6-dev-mips64el-cross (2.28-10cross6) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-mips64el-cross (9.2.1-4cross1) ... Setting up libgcc-9-dev-mips64el-cross (9.2.1-4cross1) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-4cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.7) ... Setting up sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-HMxQg1/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-HMxQg1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HMxQg1/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HMxQg1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HMxQg1/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-HMxQg1/apt_archive ./ Packages [573 B] Fetched 2020 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips64el 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HMxQg1/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips64el. (Reading database ... 16292 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev dpkg-deb: building package 'sbuild-build-depends-stacks-dummy' in '/<>/resolver-HMxQg1/apt_archive/sbuild-build-depends-stacks-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-stacks-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-HMxQg1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HMxQg1/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HMxQg1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HMxQg1/apt_archive ./ Sources [663 B] Get:5 copy:/<>/resolver-HMxQg1/apt_archive ./ Packages [745 B] Fetched 2371 B in 0s (131 kB/s) Reading package lists... Reading package lists... Install stacks build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbam-dev:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libdb5.3:mips64el libdeflate0:mips64el libelf1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-9-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed4:mips64el libhts-dev:mips64el libhts2:mips64el libidn2-0:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libncurses6:mips64el libnettle6:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libsparsehash-dev libssh2-1:mips64el libssl1.1:mips64el libstdc++-9-dev:mips64el libstdc++6:mips64el libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtool libuchardet0 libunistring2:mips64el linux-libc-dev:mips64el m4 man-db po-debconf samtools:mips64el zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el manpages-dev:mips64el rng-tools:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el krb5-locales:mips64el libgpm2 libgpm2:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libmail-sendmail-perl python:mips64el cwltool:mips64el The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbam-dev:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libdb5.3:mips64el libdeflate0:mips64el libelf1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-9-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed4:mips64el libhts-dev:mips64el libhts2:mips64el libidn2-0:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libncurses6:mips64el libnettle6:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libsparsehash-dev libssh2-1:mips64el libssl1.1:mips64el libstdc++-9-dev:mips64el libstdc++6:mips64el libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtool libuchardet0 libunistring2:mips64el linux-libc-dev:mips64el m4 man-db po-debconf samtools:mips64el sbuild-build-depends-stacks-dummy:mips64el zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 31.8 MB of archives. After this operation, 123 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HMxQg1/apt_archive ./ sbuild-build-depends-stacks-dummy 0.invalid.0 [904 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.2.1-4 [192 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.5.0-1 [14.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.3 [1036 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc1 mips64el 1:9.2.1-4 [69.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.28-10 [2562 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 9.2.1-4 [7480 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mips64el libbam-dev mips64el 0.1.19-4 [132 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.6-9.2 [46.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.2.9-2 [1228 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.28-10 [2513 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.3-4 [70.3 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.1.2+dfsg-4 [237 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle6 mips64el 3.4.1-1+b1 [228 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed4 mips64el 3.4.1-1+b1 [134 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-2 [376 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.2.0-1 [81.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main mips64el libffi6 mips64el 3.2.1-9 [21.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.16.1-2 [259 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.14-2 [51.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.9-4 [1015 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6-6 [14.5 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.17-6 [62.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.17-6 [121 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1c-1 [1135 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.17-6 [333 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.17-6 [141 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-1 [68.2 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-1 [102 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.48+dfsg-1 [205 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.39.2-1 [78.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.20.2-2 [53.5 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-1+b1 [88.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2 [55.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.36-7 [68.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.4-5 [496 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.65.3-1 [311 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.3-1 [81.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 9.2.1-4 [78.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.2.1-4 [246 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1+b1 [151 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main mips64el libhts2 mips64el 1.9-11 [279 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1+b1 [214 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-1+b1 [211 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.9-11 [4351 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main mips64el libtinfo6 mips64el 6.1+20190803-1 [325 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main mips64el libncurses6 mips64el 6.1+20190803-1 [89.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsparsehash-dev all 2.0.3-1 [76.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 9.2.1-4 [435 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.2.1-4 [1703 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mips64el samtools mips64el 1.9-5 [433 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.8 MB in 1s (28.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16292 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Unpacking sbuild-build-depends-stacks-dummy:mips64el (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-2) ... No schema files found: doing nothing. Setting up linux-libc-dev:mips64el (5.2.9-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libsparsehash-dev (2.0.3-1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libbam-dev:mips64el (0.1.19-4) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:mips64el (9.2.1-4) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mips64el (2.28-10) ... Setting up libtasn1-6:mips64el (4.14-2) ... Setting up libc6-dev:mips64el (2.28-10) ... Setting up libbz2-1.0:mips64el (1.0.6-9.2) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Setting up libtinfo6:mips64el (6.1+20190803-1) ... Setting up libkeyutils1:mips64el (1.6-6) ... Setting up liblzma5:mips64el (5.2.4-1+b1) ... Setting up libgpg-error0:mips64el (1.36-7) ... Setting up libgcc1:mips64el (1:9.2.1-4) ... Setting up libssl1.1:mips64el (1.1.1c-1) ... Setting up libnghttp2-14:mips64el (1.39.2-1) ... Setting up libunistring2:mips64el (0.9.10-2) ... Setting up libdeflate0:mips64el (1.3-1) ... Setting up libgcrypt20:mips64el (1.8.4-5) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:mips64el (3.2.1-9) ... Setting up libidn2-0:mips64el (2.2.0-1) ... Setting up libcom-err2:mips64el (1.45.3-4) ... Setting up libgomp1:mips64el (9.2.1-4) ... Setting up libkrb5support0:mips64el (1.17-6) ... Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up libgmp10:mips64el (2:6.1.2+dfsg-4) ... Setting up libncurses6:mips64el (6.1+20190803-1) ... Setting up libp11-kit0:mips64el (0.23.16.1-2) ... Setting up libatomic1:mips64el (9.2.1-4) ... Setting up libk5crypto3:mips64el (1.17-6) ... Setting up libnettle6:mips64el (3.4.1-1+b1) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-1) ... Setting up liblzma-dev:mips64el (5.2.4-1+b1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:mips64el (1.8.0-2.1) ... Setting up libkrb5-3:mips64el (1.17-6) ... Setting up libstdc++6:mips64el (9.2.1-4) ... Setting up libpsl5:mips64el (0.20.2-2) ... Setting up libhogweed4:mips64el (3.4.1-1+b1) ... Setting up debhelper (12.5.3) ... Setting up libgcc-9-dev:mips64el (9.2.1-4) ... Setting up libgnutls30:mips64el (3.6.9-4) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:mips64el (1.17-6) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up libstdc++-9-dev:mips64el (9.2.1-4) ... Setting up libldap-2.4-2:mips64el (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:mips64el (7.65.3-1) ... Setting up libhts2:mips64el (1.9-11) ... Setting up libhts-dev:mips64el (1.9-11) ... Setting up samtools:mips64el (1.9-5) ... Setting up sbuild-build-depends-stacks-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190821-2 dpkg-dev_1.19.7 g++-8_8.3.0-21 g++-9_9.2.1-4 gcc-8_8.3.0-21 gcc-9_9.2.1-4 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-4 libstdc++-9-dev-mips64el-cross_9.2.1-4cross1 libstdc++6_9.2.1-4 libstdc++6-mips64el-cross_9.2.1-4cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190821-2 binutils-common_2.32.51.20190821-2 binutils-mips64el-linux-gnuabi64_2.32.51.20190821-2 binutils-x86-64-linux-gnu_2.32.51.20190821-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.7 bzip2_1.0.6-9.2 coreutils_8.30-3+b1 cpp_4:9.2.1-3 cpp-8_8.3.0-21 cpp-9_9.2.1-4 cpp-9-mips64el-linux-gnuabi64_9.2.1-4cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-3 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.7 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:9.2.1-3 g++-8_8.3.0-21 g++-9_9.2.1-4 g++-9-mips64el-linux-gnuabi64_9.2.1-4cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-3 gcc_4:9.2.1-3 gcc-8_8.3.0-21 gcc-8-base_8.3.0-21 gcc-9_9.2.1-4 gcc-9-base_9.2.1-4 gcc-9-cross-base_9.2.1-4cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-4cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-4cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-3 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libasan5_9.2.1-4 libatomic1_9.2.1-4 libatomic1-mips64el-cross_9.2.1-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbam-dev_0.1.19-4 libbinutils_2.32.51.20190821-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mips64el-cross_2.28-10cross6 libc6-mips64el-cross_2.28-10cross6 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-4 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-21 libgcc-9-dev_9.2.1-4 libgcc-9-dev-mips64el-cross_9.2.1-4cross1 libgcc1_1:9.2.1-4 libgcc1-mips64el-cross_1:9.2.1-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-4 libgomp1-mips64el-cross_9.2.1-4cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.4.1-1+b1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.2.1-4 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-4 liblz4-1_1.8.3-1+b1 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-21 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1+b1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_9.2.1-4 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsparsehash-dev_2.0.3-1 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-4 libstdc++-9-dev-mips64el-cross_9.2.1-4cross1 libstdc++6_9.2.1-4 libstdc++6-mips64el-cross_9.2.1-4cross1 libsub-override-perl_0.09-2 libsystemd0_242-4 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-10 libtsan0_9.2.1-4 libubsan1_9.2.1-4 libuchardet0_0.0.6-3 libudev1_242-4 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-mips64el-cross_5.2.9-2cross6 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 samtools_1.9-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-stacks-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019b-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jul 12 18:48:24 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./stacks_2.41+dfsg-1.dsc dpkg-source: info: extracting stacks in /<>/stacks-2.41+dfsg dpkg-source: info: unpacking stacks_2.41+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.41+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-36e3ca5e-fb2e-496f-910f-92011e18acb1 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.41+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>/stacks-2.41+dfsg' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-sparsehash, --enable-bam, --with-bam-include-path, --with-bam-lib-path configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mips64el-linux-gnuabi64-g++... none checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking whether mips64el-linux-gnuabi64-g++ supports C++11 features by default... yes checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking the archiver (mips64el-linux-gnuabi64-ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... mips64el-linux-gnuabi64-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for mips64el-linux-gnuabi64-gcc option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater. no checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-sparsehash, --enable-bam, --with-bam-include-path, --with-bam-lib-path make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_auto_build -a make -j1 make[1]: Entering directory '/<>/stacks-2.41+dfsg' make all-recursive make[2]: Entering directory '/<>/stacks-2.41+dfsg' make[3]: Entering directory '/<>/stacks-2.41+dfsg' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc rm -f libcore.a mips64el-linux-gnuabi64-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libcore.a mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc rm -f libclean.a mips64el-linux-gnuabi64-ar cru libclean.a src/clean.o src/file_io.o src/write.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libclean.a mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc src/export_formats.cc: In member function 'virtual int PhylipVarAllExport::post_processing()': src/export_formats.cc:2360:22: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] 2360 | sprintf(s, "% 11lu", this->_seq_len); | ^ mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc rm -f libpop.a mips64el-linux-gnuabi64-ar cru libpop.a src/export_formats.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libpop.a mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>/stacks-2.41+dfsg' make[2]: Leaving directory '/<>/stacks-2.41+dfsg' make[1]: Leaving directory '/<>/stacks-2.41+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.41\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/stacks-2.41+dfsg' make[3]: Entering directory '/<>/stacks-2.41+dfsg' make[4]: Entering directory '/<>/stacks-2.41+dfsg' /bin/mkdir -p '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /bin/mkdir -p '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/integrate_alignments.py scripts/count_fixed_catalog_snps.py scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>/stacks-2.41+dfsg' sed -e 's,_VERSION_,2.41,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl > /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl.subst /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.41,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl > /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl.subst /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.41,' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments rm -f /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments.bkp chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>/stacks-2.41+dfsg' make[4]: Leaving directory '/<>/stacks-2.41+dfsg' make[3]: Leaving directory '/<>/stacks-2.41+dfsg' make[2]: Leaving directory '/<>/stacks-2.41+dfsg' make[1]: Leaving directory '/<>/stacks-2.41+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/stacks-2.41+dfsg' mkdir -p debian/stacks/usr/lib/stacks mv debian/stacks/usr/bin debian/stacks/usr/lib/stacks cd debian/stacks/usr/lib/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_link mkdir -p debian/stacks/usr/lib/debian-med/bin cd debian/stacks/usr/lib/debian-med/bin && \ for f in `ls /<>/stacks-2.41+dfsg/debian/stacks/usr/lib/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'stacks' in '../stacks_2.41+dfsg-1_mips64el.deb'. dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.41+dfsg-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../stacks_2.41+dfsg-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-28T06:32:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-HMxQg1/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-stacks-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-HMxQg1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HMxQg1/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HMxQg1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HMxQg1/apt_archive ./ Sources [785 B] Get:5 copy:/<>/resolver-HMxQg1/apt_archive ./ Packages [857 B] Fetched 2605 B in 0s (128 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8520 kB of archives. After this operation, 23.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HMxQg1/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-1 [34.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.19.0 [1256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8520 kB in 0s (27.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19412 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../24-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../28-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../33-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../34-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../35-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../36-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../37-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../38-libnumber-compare-perl_0.03-1_all.deb ... Unpacking libnumber-compare-perl (0.03-1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../39-libtext-glob-perl_0.10-1_all.deb ... Unpacking libtext-glob-perl (0.10-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../40-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../41-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../42-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../43-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../44-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../45-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../46-libio-async-perl_0.74-1_all.deb ... Unpacking libio-async-perl (0.74-1) ... Selecting previously unselected package liblinux-epoll-perl. Preparing to unpack .../47-liblinux-epoll-perl_0.016-1+b1_amd64.deb ... Unpacking liblinux-epoll-perl (0.016-1+b1) ... Selecting previously unselected package libio-async-loop-epoll-perl. Preparing to unpack .../48-libio-async-loop-epoll-perl_0.20-1_all.deb ... Unpacking libio-async-loop-epoll-perl (0.20-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../49-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../50-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-compare-perl. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.41+dfsg-1_mips64el.changes: ------------------------------------ Format: 1.8 Date: Fri, 12 Jul 2019 20:40:33 +0200 Source: stacks Binary: stacks stacks-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.41+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.41+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * dh_auto_install --no-parallel * Removed stacks-web package since the code for the web service was removed from upstream source and the package has no active users according to popcon anyway * Python3 port of two simple scripts using 2to3 Checksums-Sha1: 0127cbcc3bc9391a0e4cdb1fc8f445783b4ebbd1 27959388 stacks-dbgsym_2.41+dfsg-1_mips64el.deb 77f1c1471e2959979079bbb184cba98a61764dcf 5548 stacks_2.41+dfsg-1_mips64el.buildinfo aab642d758896bf6fcf010a0a984d9ce411baa07 985872 stacks_2.41+dfsg-1_mips64el.deb Checksums-Sha256: 2622339b22c89ebcea6aaa99d6e0d301b6ced8f579442fb04a3bfc15805a949f 27959388 stacks-dbgsym_2.41+dfsg-1_mips64el.deb cd4c496d36106268c5bdb690dabecff5359718f13f3aae4a20ba2f04ab2a8811 5548 stacks_2.41+dfsg-1_mips64el.buildinfo f92983ade04f9cbe43813edc3d395695b4bb0f58e544643f01eed07874f2fea7 985872 stacks_2.41+dfsg-1_mips64el.deb Files: d0ff244b53ab7ca70d2cd3b1df568fe8 27959388 debug optional stacks-dbgsym_2.41+dfsg-1_mips64el.deb 79c40535699ed37a58861a8edf6d19bf 5548 science optional stacks_2.41+dfsg-1_mips64el.buildinfo 6188da0d02e9a74649f5ff1ac1469550 985872 science optional stacks_2.41+dfsg-1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks Architecture: mips64el Version: 2.41+dfsg-1 Checksums-Md5: d0ff244b53ab7ca70d2cd3b1df568fe8 27959388 stacks-dbgsym_2.41+dfsg-1_mips64el.deb 6188da0d02e9a74649f5ff1ac1469550 985872 stacks_2.41+dfsg-1_mips64el.deb Checksums-Sha1: 0127cbcc3bc9391a0e4cdb1fc8f445783b4ebbd1 27959388 stacks-dbgsym_2.41+dfsg-1_mips64el.deb aab642d758896bf6fcf010a0a984d9ce411baa07 985872 stacks_2.41+dfsg-1_mips64el.deb Checksums-Sha256: 2622339b22c89ebcea6aaa99d6e0d301b6ced8f579442fb04a3bfc15805a949f 27959388 stacks-dbgsym_2.41+dfsg-1_mips64el.deb f92983ade04f9cbe43813edc3d395695b4bb0f58e544643f01eed07874f2fea7 985872 stacks_2.41+dfsg-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 28 Aug 2019 06:32:19 +0000 Build-Path: /<>/stacks-2.41+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190821-2), binutils-common (= 2.32.51.20190821-2), binutils-x86-64-linux-gnu (= 2.32.51.20190821-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.7), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3), cpp-8 (= 8.3.0-21), cpp-9 (= 9.2.1-4), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.5.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.5.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:9.2.1-3), g++-9 (= 9.2.1-4), gcc (= 4:9.2.1-3), gcc-8 (= 8.3.0-21), gcc-8-base (= 8.3.0-21), gcc-9 (= 9.2.1-4), gcc-9-base (= 9.2.1-4), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.2.1-4), libatomic1 (= 9.2.1-4), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbam-dev (= 0.1.19-4), libbinutils (= 2.32.51.20190821-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-4), libcom-err2 (= 1.45.3-4), libcroco3 (= 0.6.13-1), libcurl3-gnutls (= 7.65.3-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdeflate0 (= 1.3-1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.5.0-1), libgcc-8-dev (= 8.3.0-21), libgcc-9-dev (= 9.2.1-4), libgcc1 (= 1:9.2.1-4), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-4), libgomp1 (= 9.2.1-4), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhogweed4 (= 3.4.1-1+b1), libhts-dev (= 1.9-11), libhts2 (= 1.9-11), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-1), libisl19 (= 0.20-2), libitm1 (= 9.2.1-4), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.2.1-4), liblz4-1 (= 1.8.3-1+b1), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-21), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnettle6 (= 3.4.1-1+b1), libnghttp2-14 (= 1.39.2-1), libp11-kit0 (= 0.23.16.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.2.1-4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libsparsehash-dev (= 2.0.3-1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1c-1), libstdc++-9-dev (= 9.2.1-4), libstdc++6 (= 9.2.1-4), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-4), libtasn1-6 (= 4.14-2), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-10), libtsan0 (= 9.2.1-4), libubsan1 (= 9.2.1-4), libuchardet0 (= 0.0.6-3), libudev1 (= 242-4), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.9-2), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), 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Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 28909 Depends: stacks (= 2.41+dfsg-1) Section: debug Priority: optional Description: debug symbols for stacks Build-Ids: 2842a7acb46e71ecaba0b50931d316aa76cb5a85 2a0ec95d5d1eb4b6126b1db721500aa2bb970201 3df77c2419765d22bef5c42ec474eb53e44eea30 5684d3396b2b18cd1ee869cc6882f308f5da2da2 6e57becb50c01dd3752e599beaa19fe10402ffb1 8152f8656d72147d718964b0bfcdebc3d59cf50f 84790f3ffafef01b6adc9e08b8c42062651c3405 e21b04ff87a4c5e1ce4491d89c912367d39a4dc9 eab29c321c28e793f4ce83a8adafae392f27f103 f15ea741664faa817f4f01822a7df4af16a78de3 f704fffdd6f21de48b7f7c9560990a5626868310 drwxr-xr-x root/root 0 2019-07-12 18:40 ./ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-07-12 18:40 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./usr/lib/debug/.build-id/f7/04fffdd6f21de48b7f7c9560990a5626868310.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 1219352 2019-07-12 18:40 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/stacks.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/share/doc/stacks-dbgsym -> stacks stacks_2.41+dfsg-1_mips64el.deb ------------------------------- new Debian package, version 2.0. size 985872 bytes: control archive=1516 bytes. 994 bytes, 21 lines control 1541 bytes, 23 lines md5sums Package: stacks Version: 2.41+dfsg-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 6835 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 6), libhts2 (>= 1.0), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl, python3 Conflicts: stacks-web Replaces: stacks-web Provides: stacks-web Section: science Priority: optional Homepage: http://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/bin/ -rwxr-xr-x root/root 771 2019-07-12 18:40 ./usr/bin/stacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/count_fixed_catalog_snps.py -> ../../stacks/bin/count_fixed_catalog_snps.py lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/integrate_alignments.py -> ../../stacks/bin/integrate_alignments.py lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/stacks/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/ -rwxr-xr-x root/root 469344 2019-07-12 18:40 ./usr/lib/stacks/bin/clone_filter -rwxr-xr-x root/root 8652 2019-07-12 18:40 ./usr/lib/stacks/bin/count_fixed_catalog_snps.py -rwxr-xr-x root/root 589240 2019-07-12 18:40 ./usr/lib/stacks/bin/cstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 22296 2019-07-12 18:40 ./usr/lib/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 970776 2019-07-12 18:40 ./usr/lib/stacks/bin/gstacks -rwxr-xr-x root/root 10879 2019-07-12 18:40 ./usr/lib/stacks/bin/integrate_alignments.py -rwxr-xr-x root/root 375808 2019-07-12 18:40 ./usr/lib/stacks/bin/kmer_filter -rwxr-xr-x root/root 483024 2019-07-12 18:40 ./usr/lib/stacks/bin/phasedstacks -rwxr-xr-x root/root 1125856 2019-07-12 18:40 ./usr/lib/stacks/bin/populations -rwxr-xr-x root/root 552320 2019-07-12 18:40 ./usr/lib/stacks/bin/process_radtags -rwxr-xr-x root/root 473712 2019-07-12 18:40 ./usr/lib/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 14547 2019-07-12 18:40 ./usr/lib/stacks/bin/ref_map.pl -rwxr-xr-x root/root 584920 2019-07-12 18:40 ./usr/lib/stacks/bin/sstacks -rwxr-xr-x root/root 773 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1207 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-gdb -rwxr-xr-x root/root 5752 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 585456 2019-07-12 18:40 ./usr/lib/stacks/bin/tsv2bam -rwxr-xr-x root/root 644776 2019-07-12 18:40 ./usr/lib/stacks/bin/ustacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/stacks/ -rw-r--r-- root/root 1451 2019-07-12 18:40 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1523 2019-07-12 18:40 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 27833 2019-07-08 18:29 ./usr/share/doc/stacks/changelog.gz -rw-r--r-- root/root 1383 2019-07-12 18:40 ./usr/share/doc/stacks/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 517788 Build-Time: 385 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 26 Job: stacks_2.41+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: stacks Package-Time: 421 Source-Version: 2.41+dfsg-1 Space: 517788 Status: successful Version: 2.41+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-08-28T06:32:20Z Build needed 00:07:01, 517788k disk space