sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | stacks 2.41+dfsg-1 (s390x) Wed, 28 Aug 2019 11:33:44 +0000 | +==============================================================================+ Package: stacks Version: 2.41+dfsg-1 Source Version: 2.41+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2613f78b-ebc3-44ff-87b9-06b8438f840c' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-28-0829.45.pdiff [12.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-28-0829.45.pdiff [29.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-28-0829.45.pdiff [12.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7975 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-28-0829.45.pdiff [29.8 kB] Fetched 8211 kB in 2s (3790 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/stacks.git Please use: git clone https://salsa.debian.org/med-team/stacks.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 393 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (dsc) [2034 B] Get:2 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (tar) [384 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main stacks 2.41+dfsg-1 (diff) [7116 B] Fetched 393 kB in 0s (8604 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/stacks-8ie0zb/stacks-2.41+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-8ie0zb' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-a3apSb/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-a3apSb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a3apSb/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-a3apSb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a3apSb/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-a3apSb/apt_archive ./ Packages [452 B] Fetched 1770 B in 0s (95.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-9-locales cpp-doc binutils-multiarch g++-9-multilib-s390x-linux-gnu gcc-9-doc libstdc++6-9-dbg-s390x-cross gcc-9-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 40.3 MB of archives. After this operation, 149 MB of additional disk space will be used. Get:1 copy:/<>/resolver-a3apSb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.32.51.20190821-2 [1914 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.2.1-4cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.2.1-4cross1 [6136 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3 [16.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-4cross1 [188 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-10cross6 [1310 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:9.2.1-4cross1 [24.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 9.2.1-4cross1 [79.4 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 9.2.1-4cross1 [26.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 9.2.1-4cross1 [8008 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.2.1-4cross1 [337 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 9.2.1-4cross1 [449 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 9.2.1-4cross1 [119 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.2.1-4cross1 [682 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.2.1-4cross1 [6492 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3 [1452 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.2.9-2cross6 [1327 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-10cross6 [2255 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.2.1-4cross1 [1644 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.2.1-4cross1 [6712 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.7 [6600 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.3 MB in 1s (60.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13052 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../06-binutils-s390x-linux-gnu_2.32.51.20190821-2_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.32.51.20190821-2) ... Selecting previously unselected package gcc-9-s390x-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-9-s390x-linux-gnu-base_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-4cross1) ... Selecting previously unselected package cpp-9-s390x-linux-gnu. Preparing to unpack .../08-cpp-9-s390x-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking cpp-9-s390x-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../11-gcc-9-cross-base_9.2.1-4cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-4cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../12-libc6-s390x-cross_2.28-10cross6_all.deb ... Unpacking libc6-s390x-cross (2.28-10cross6) ... Selecting previously unselected package libgcc1-s390x-cross. Preparing to unpack .../13-libgcc1-s390x-cross_1%3a9.2.1-4cross1_all.deb ... Unpacking libgcc1-s390x-cross (1:9.2.1-4cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../14-libgomp1-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libgomp1-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../15-libitm1-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libitm1-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libatomic1-s390x-cross. Preparing to unpack .../16-libatomic1-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libatomic1-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libasan5-s390x-cross. Preparing to unpack .../17-libasan5-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libasan5-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libstdc++6-s390x-cross. Preparing to unpack .../18-libstdc++6-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++6-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libubsan1-s390x-cross. Preparing to unpack .../19-libubsan1-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libubsan1-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package libgcc-9-dev-s390x-cross. Preparing to unpack .../20-libgcc-9-dev-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libgcc-9-dev-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package gcc-9-s390x-linux-gnu. Preparing to unpack .../21-gcc-9-s390x-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-s390x-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../22-gcc-s390x-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../23-linux-libc-dev-s390x-cross_5.2.9-2cross6_all.deb ... Unpacking linux-libc-dev-s390x-cross (5.2.9-2cross6) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../24-libc6-dev-s390x-cross_2.28-10cross6_all.deb ... Unpacking libc6-dev-s390x-cross (2.28-10cross6) ... Selecting previously unselected package libstdc++-9-dev-s390x-cross. Preparing to unpack .../25-libstdc++-9-dev-s390x-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++-9-dev-s390x-cross (9.2.1-4cross1) ... Selecting previously unselected package g++-9-s390x-linux-gnu. Preparing to unpack .../26-g++-9-s390x-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking g++-9-s390x-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../27-g++-s390x-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../28-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../29-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../30-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../31-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../32-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../33-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../34-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../35-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../36-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../37-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../43-crossbuild-essential-s390x_12.7_all.deb ... Unpacking crossbuild-essential-s390x (12.7) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.32.51.20190821-2) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libc6-s390x-cross (2.28-10cross6) ... Setting up gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-4cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (5.2.9-2cross6) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-9-s390x-linux-gnu (9.2.1-4cross1) ... Setting up gcc-9-cross-base (9.2.1-4cross1) ... Setting up libitm1-s390x-cross (9.2.1-4cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-10cross6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (9.2.1-4cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:9.2.1-4cross1) ... Setting up cpp-s390x-linux-gnu (4:9.2.1-3) ... Setting up libstdc++6-s390x-cross (9.2.1-4cross1) ... Setting up libatomic1-s390x-cross (9.2.1-4cross1) ... Setting up libasan5-s390x-cross (9.2.1-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (9.2.1-4cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-s390x-cross (9.2.1-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-9-dev-s390x-cross (9.2.1-4cross1) ... Setting up gcc-9-s390x-linux-gnu (9.2.1-4cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:9.2.1-3) ... Setting up g++-9-s390x-linux-gnu (9.2.1-4cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-s390x-linux-gnu (4:9.2.1-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-s390x (12.7) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-a3apSb/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-a3apSb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a3apSb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-a3apSb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a3apSb/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-a3apSb/apt_archive ./ Packages [570 B] Fetched 2016 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-a3apSb/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 16223 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev dpkg-deb: building package 'sbuild-build-depends-stacks-dummy' in '/<>/resolver-a3apSb/apt_archive/sbuild-build-depends-stacks-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-stacks-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-a3apSb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a3apSb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-a3apSb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a3apSb/apt_archive ./ Sources [663 B] Get:5 copy:/<>/resolver-a3apSb/apt_archive ./ Packages [745 B] Fetched 2371 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install stacks build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbam-dev:s390x libbsd0 libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libcom-err2:s390x libcroco3 libcurl3-gnutls:s390x libdb5.3:s390x libdeflate0:s390x libelf1 libffi6:s390x libfile-stripnondeterminism-perl libgcc-9-dev:s390x libgcc1:s390x libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed4:s390x libhts-dev:s390x libhts2:s390x libidn2-0:s390x libitm1:s390x libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x libldap-common liblzma-dev:s390x liblzma5:s390x libncurses6 libncurses6:s390x libnettle6:s390x libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libsparsehash-dev libssh2-1:s390x libssl1.1:s390x libstdc++-9-dev:s390x libstdc++6:s390x libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtool libubsan1:s390x libuchardet0 libunistring2:s390x linux-libc-dev:s390x m4 man-db po-debconf samtools:s390x zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x rng-tools:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:s390x libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:s390x krb5-locales:s390x libgpm2 libgpm2:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libmail-sendmail-perl python:s390x cwltool:s390x The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbam-dev:s390x libbsd0 libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libcom-err2:s390x libcroco3 libcurl3-gnutls:s390x libdb5.3:s390x libdeflate0:s390x libelf1 libffi6:s390x libfile-stripnondeterminism-perl libgcc-9-dev:s390x libgcc1:s390x libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed4:s390x libhts-dev:s390x libhts2:s390x libidn2-0:s390x libitm1:s390x libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x libldap-common liblzma-dev:s390x liblzma5:s390x libncurses6 libncurses6:s390x libnettle6:s390x libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libsparsehash-dev libssh2-1:s390x libssl1.1:s390x libstdc++-9-dev:s390x libstdc++6:s390x libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtool libubsan1:s390x libuchardet0 libunistring2:s390x linux-libc-dev:s390x m4 man-db po-debconf samtools:s390x sbuild-build-depends-stacks-dummy:s390x zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 32.5 MB of archives. After this operation, 122 MB of additional disk space will be used. Get:1 copy:/<>/resolver-a3apSb/apt_archive ./ sbuild-build-depends-stacks-dummy 0.invalid.0 [904 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.2.1-4 [192 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.5.0-1 [14.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.3 [1036 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:9.2.1-4 [24.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-10 [2505 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.2.1-4 [344 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 9.2.1-4 [8096 B] Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libbam-dev s390x 0.1.19-4 [118 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.6-9.2 [45.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.2.9-2 [1232 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-10 [2270 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.3-4 [70.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.1.2+dfsg-4 [238 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main s390x libnettle6 s390x 3.4.1-1+b1 [225 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed4 s390x 3.4.1-1+b1 [139 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-2 [367 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.2.0-1 [81.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main s390x libffi6 s390x 3.2.1-9 [18.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.16.1-2 [315 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.14-2 [51.4 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.9-4 [1057 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6-6 [14.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.17-6 [63.7 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.17-6 [114 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1c-1 [1194 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.17-6 [345 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.17-6 [144 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6 [612 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-1 [68.0 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-1 [103 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.48+dfsg-1 [215 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.39.2-1 [78.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.20.2-2 [53.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1+b1 [88.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2 [56.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main s390x libgpg-error0 s390x 1.36-7 [67.2 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main s390x libgcrypt20 s390x 1.8.4-5 [487 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.8.0-2.1 [132 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.65.3-1 [312 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.3-1 [78.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 9.2.1-4 [81.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 9.2.1-4 [26.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 9.2.1-4 [490 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 9.2.1-4 [120 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.2.1-4 [681 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.4-1+b1 [151 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main s390x libhts2 s390x 1.9-11 [279 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.4-1+b1 [210 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1+b1 [207 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main s390x libhts-dev s390x 1.9-11 [4347 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main s390x libtinfo6 s390x 6.1+20190803-1 [327 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main s390x libncurses6 s390x 6.1+20190803-1 [95.0 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsparsehash-dev all 2.0.3-1 [76.9 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.2.1-4 [1633 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main s390x samtools s390x 1.9-5 [417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.5 MB in 1s (27.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16223 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../06-gcc-9-base_9.2.1-4_s390x.deb ... Unpacking gcc-9-base:s390x (9.2.1-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.5.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.5.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.5.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.5.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.5.3_all.deb ... Unpacking debhelper (12.5.3) ... Selecting previously unselected package libgcc1:s390x. Preparing to unpack .../29-libgcc1_1%3a9.2.1-4_s390x.deb ... Unpacking libgcc1:s390x (1:9.2.1-4) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../30-libc6_2.28-10_s390x.deb ... Unpacking libc6:s390x (2.28-10) ... Selecting previously unselected package libasan5:s390x. Preparing to unpack .../31-libasan5_9.2.1-4_s390x.deb ... Unpacking libasan5:s390x (9.2.1-4) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../32-libatomic1_9.2.1-4_s390x.deb ... Unpacking libatomic1:s390x (9.2.1-4) ... Selecting previously unselected package libbam-dev:s390x. Preparing to unpack .../33-libbam-dev_0.1.19-4_s390x.deb ... Unpacking libbam-dev:s390x (0.1.19-4) ... Selecting previously unselected package libbz2-1.0:s390x. Preparing to unpack .../34-libbz2-1.0_1.0.6-9.2_s390x.deb ... Unpacking libbz2-1.0:s390x (1.0.6-9.2) ... Selecting previously unselected package linux-libc-dev:s390x. Preparing to unpack .../35-linux-libc-dev_5.2.9-2_s390x.deb ... Unpacking linux-libc-dev:s390x (5.2.9-2) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../36-libc6-dev_2.28-10_s390x.deb ... Unpacking libc6-dev:s390x (2.28-10) ... Selecting previously unselected package libcom-err2:s390x. Preparing to unpack .../37-libcom-err2_1.45.3-4_s390x.deb ... Unpacking libcom-err2:s390x (1.45.3-4) ... Selecting previously unselected package libgmp10:s390x. Preparing to unpack .../38-libgmp10_2%3a6.1.2+dfsg-4_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-4) ... Selecting previously unselected package libnettle6:s390x. Preparing to unpack .../39-libnettle6_3.4.1-1+b1_s390x.deb ... Unpacking libnettle6:s390x (3.4.1-1+b1) ... Selecting previously unselected package libhogweed4:s390x. Preparing to unpack .../40-libhogweed4_3.4.1-1+b1_s390x.deb ... Unpacking libhogweed4:s390x (3.4.1-1+b1) ... Selecting previously unselected package libunistring2:s390x. Preparing to unpack .../41-libunistring2_0.9.10-2_s390x.deb ... Unpacking libunistring2:s390x (0.9.10-2) ... Selecting previously unselected package libidn2-0:s390x. Preparing to unpack .../42-libidn2-0_2.2.0-1_s390x.deb ... Unpacking libidn2-0:s390x (2.2.0-1) ... Selecting previously unselected package libffi6:s390x. Preparing to unpack .../43-libffi6_3.2.1-9_s390x.deb ... Unpacking libffi6:s390x (3.2.1-9) ... Selecting previously unselected package libp11-kit0:s390x. Preparing to unpack .../44-libp11-kit0_0.23.16.1-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.16.1-2) ... Selecting previously unselected package libtasn1-6:s390x. Preparing to unpack .../45-libtasn1-6_4.14-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.14-2) ... Selecting previously unselected package libgnutls30:s390x. Preparing to unpack .../46-libgnutls30_3.6.9-4_s390x.deb ... Unpacking libgnutls30:s390x (3.6.9-4) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../47-libkeyutils1_1.6-6_s390x.deb ... Unpacking libkeyutils1:s390x (1.6-6) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../48-libkrb5support0_1.17-6_s390x.deb ... Unpacking libkrb5support0:s390x (1.17-6) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../49-libk5crypto3_1.17-6_s390x.deb ... Unpacking libk5crypto3:s390x (1.17-6) ... Selecting previously unselected package libssl1.1:s390x. Preparing to unpack .../50-libssl1.1_1.1.1c-1_s390x.deb ... Unpacking libssl1.1:s390x (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../51-libkrb5-3_1.17-6_s390x.deb ... Unpacking libkrb5-3:s390x (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../52-libgssapi-krb5-2_1.17-6_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.17-6) ... Selecting previously unselected package libdb5.3:s390x. Preparing to unpack .../53-libdb5.3_5.3.28+dfsg1-0.6_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../54-libsasl2-modules-db_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../55-libsasl2-2_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../56-libldap-common_2.4.48+dfsg-1_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:s390x. Preparing to unpack .../57-libldap-2.4-2_2.4.48+dfsg-1_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.48+dfsg-1) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../58-libnghttp2-14_1.39.2-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.39.2-1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../59-libpsl5_0.20.2-2_s390x.deb ... Unpacking libpsl5:s390x (0.20.2-2) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../60-zlib1g_1%3a1.2.11.dfsg-1+b1_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../61-librtmp1_2.4+20151223.gitfa8646d.1-2_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libgpg-error0:s390x. Preparing to unpack .../62-libgpg-error0_1.36-7_s390x.deb ... Unpacking libgpg-error0:s390x (1.36-7) ... Selecting previously unselected package libgcrypt20:s390x. Preparing to unpack .../63-libgcrypt20_1.8.4-5_s390x.deb ... Unpacking libgcrypt20:s390x (1.8.4-5) ... Selecting previously unselected package libssh2-1:s390x. Preparing to unpack .../64-libssh2-1_1.8.0-2.1_s390x.deb ... Unpacking libssh2-1:s390x (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:s390x. Preparing to unpack .../65-libcurl3-gnutls_7.65.3-1_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.65.3-1) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../66-libdeflate0_1.3-1_s390x.deb ... Unpacking libdeflate0:s390x (1.3-1) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../67-libgomp1_9.2.1-4_s390x.deb ... Unpacking libgomp1:s390x (9.2.1-4) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../68-libitm1_9.2.1-4_s390x.deb ... Unpacking libitm1:s390x (9.2.1-4) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../69-libstdc++6_9.2.1-4_s390x.deb ... Unpacking libstdc++6:s390x (9.2.1-4) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../70-libubsan1_9.2.1-4_s390x.deb ... Unpacking libubsan1:s390x (9.2.1-4) ... Selecting previously unselected package libgcc-9-dev:s390x. Preparing to unpack .../71-libgcc-9-dev_9.2.1-4_s390x.deb ... Unpacking libgcc-9-dev:s390x (9.2.1-4) ... Selecting previously unselected package liblzma5:s390x. Preparing to unpack .../72-liblzma5_5.2.4-1+b1_s390x.deb ... Unpacking liblzma5:s390x (5.2.4-1+b1) ... Selecting previously unselected package libhts2:s390x. Preparing to unpack .../73-libhts2_1.9-11_s390x.deb ... Unpacking libhts2:s390x (1.9-11) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../74-liblzma-dev_5.2.4-1+b1_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.4-1+b1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../75-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package libhts-dev:s390x. Preparing to unpack .../76-libhts-dev_1.9-11_s390x.deb ... Unpacking libhts-dev:s390x (1.9-11) ... Selecting previously unselected package libtinfo6:s390x. Preparing to unpack .../77-libtinfo6_6.1+20190803-1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20190803-1) ... Selecting previously unselected package libncurses6:s390x. Preparing to unpack .../78-libncurses6_6.1+20190803-1_s390x.deb ... Unpacking libncurses6:s390x (6.1+20190803-1) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../79-libsparsehash-dev_2.0.3-1_all.deb ... Unpacking libsparsehash-dev (2.0.3-1) ... Selecting previously unselected package libstdc++-9-dev:s390x. Preparing to unpack .../80-libstdc++-9-dev_9.2.1-4_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.2.1-4) ... Selecting previously unselected package samtools:s390x. Preparing to unpack .../81-samtools_1.9-5_s390x.deb ... Unpacking samtools:s390x (1.9-5) ... Selecting previously unselected package sbuild-build-depends-stacks-dummy:s390x. Preparing to unpack .../82-sbuild-build-depends-stacks-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-stacks-dummy:s390x (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-2) ... No schema files found: doing nothing. Setting up linux-libc-dev:s390x (5.2.9-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libsparsehash-dev (2.0.3-1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libbam-dev:s390x (0.1.19-4) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:s390x (9.2.1-4) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:s390x (2.28-10) ... Setting up libtasn1-6:s390x (4.14-2) ... Setting up libc6-dev:s390x (2.28-10) ... Setting up libbz2-1.0:s390x (1.0.6-9.2) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Setting up libitm1:s390x (9.2.1-4) ... Setting up libtinfo6:s390x (6.1+20190803-1) ... Setting up libkeyutils1:s390x (1.6-6) ... Setting up liblzma5:s390x (5.2.4-1+b1) ... Setting up libgpg-error0:s390x (1.36-7) ... Setting up libgcc1:s390x (1:9.2.1-4) ... Setting up libssl1.1:s390x (1.1.1c-1) ... Setting up libnghttp2-14:s390x (1.39.2-1) ... Setting up libunistring2:s390x (0.9.10-2) ... Setting up libdeflate0:s390x (1.3-1) ... Setting up libgcrypt20:s390x (1.8.4-5) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:s390x (3.2.1-9) ... Setting up libidn2-0:s390x (2.2.0-1) ... Setting up libcom-err2:s390x (1.45.3-4) ... Setting up libgomp1:s390x (9.2.1-4) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:s390x (9.2.1-4) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-4) ... Setting up libncurses6:s390x (6.1+20190803-1) ... Setting up libp11-kit0:s390x (0.23.16.1-2) ... Setting up libatomic1:s390x (9.2.1-4) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libnettle6:s390x (3.4.1-1+b1) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-1) ... Setting up liblzma-dev:s390x (5.2.4-1+b1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:s390x (1.8.0-2.1) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libstdc++6:s390x (9.2.1-4) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libhogweed4:s390x (3.4.1-1+b1) ... Setting up debhelper (12.5.3) ... Setting up libgnutls30:s390x (3.6.9-4) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libubsan1:s390x (9.2.1-4) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up libldap-2.4-2:s390x (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.65.3-1) ... Setting up libgcc-9-dev:s390x (9.2.1-4) ... Setting up libstdc++-9-dev:s390x (9.2.1-4) ... Setting up libhts2:s390x (1.9-11) ... Setting up libhts-dev:s390x (1.9-11) ... Setting up samtools:s390x (1.9-5) ... Setting up sbuild-build-depends-stacks-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190821-2 dpkg-dev_1.19.7 g++-8_8.3.0-21 g++-9_9.2.1-4 gcc-8_8.3.0-21 gcc-9_9.2.1-4 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-4 libstdc++-9-dev-s390x-cross_9.2.1-4cross1 libstdc++6_9.2.1-4 libstdc++6-s390x-cross_9.2.1-4cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190821-2 binutils-common_2.32.51.20190821-2 binutils-s390x-linux-gnu_2.32.51.20190821-2 binutils-x86-64-linux-gnu_2.32.51.20190821-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.7 bzip2_1.0.6-9.2 coreutils_8.30-3+b1 cpp_4:9.2.1-3 cpp-8_8.3.0-21 cpp-9_9.2.1-4 cpp-9-s390x-linux-gnu_9.2.1-4cross1 cpp-s390x-linux-gnu_4:9.2.1-3 cross-config_2.6.15-3 crossbuild-essential-s390x_12.7 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:9.2.1-3 g++-8_8.3.0-21 g++-9_9.2.1-4 g++-9-s390x-linux-gnu_9.2.1-4cross1 g++-s390x-linux-gnu_4:9.2.1-3 gcc_4:9.2.1-3 gcc-8_8.3.0-21 gcc-8-base_8.3.0-21 gcc-9_9.2.1-4 gcc-9-base_9.2.1-4 gcc-9-cross-base_9.2.1-4cross1 gcc-9-s390x-linux-gnu_9.2.1-4cross1 gcc-9-s390x-linux-gnu-base_9.2.1-4cross1 gcc-s390x-linux-gnu_4:9.2.1-3 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libasan5_9.2.1-4 libasan5-s390x-cross_9.2.1-4cross1 libatomic1_9.2.1-4 libatomic1-s390x-cross_9.2.1-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbam-dev_0.1.19-4 libbinutils_2.32.51.20190821-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-s390x-cross_2.28-10cross6 libc6-s390x-cross_2.28-10cross6 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-4 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-21 libgcc-9-dev_9.2.1-4 libgcc-9-dev-s390x-cross_9.2.1-4cross1 libgcc1_1:9.2.1-4 libgcc1-s390x-cross_1:9.2.1-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-4 libgomp1-s390x-cross_9.2.1-4cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.4.1-1+b1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.2.1-4 libitm1-s390x-cross_9.2.1-4cross1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-4 liblz4-1_1.8.3-1+b1 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-21 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1+b1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_9.2.1-4 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsparsehash-dev_2.0.3-1 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-4 libstdc++-9-dev-s390x-cross_9.2.1-4cross1 libstdc++6_9.2.1-4 libstdc++6-s390x-cross_9.2.1-4cross1 libsub-override-perl_0.09-2 libsystemd0_242-4 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-10 libtsan0_9.2.1-4 libubsan1_9.2.1-4 libubsan1-s390x-cross_9.2.1-4cross1 libuchardet0_0.0.6-3 libudev1_242-4 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-s390x-cross_5.2.9-2cross6 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 samtools_1.9-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-stacks-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019b-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jul 12 18:48:24 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./stacks_2.41+dfsg-1.dsc dpkg-source: info: extracting stacks in /<>/stacks-2.41+dfsg dpkg-source: info: unpacking stacks_2.41+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.41+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2613f78b-ebc3-44ff-87b9-06b8438f840c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.41+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>/stacks-2.41+dfsg' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-sparsehash, --enable-bam, --with-bam-include-path, --with-bam-lib-path configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking whether s390x-linux-gnu-g++ supports C++11 features by default... yes checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking the archiver (s390x-linux-gnu-ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for s390x-linux-gnu-gcc option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater. no checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-sparsehash, --enable-bam, --with-bam-include-path, --with-bam-lib-path make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_auto_build -a make -j1 make[1]: Entering directory '/<>/stacks-2.41+dfsg' make all-recursive make[2]: Entering directory '/<>/stacks-2.41+dfsg' make[3]: Entering directory '/<>/stacks-2.41+dfsg' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc rm -f libcore.a s390x-linux-gnu-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libcore.a s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc rm -f libclean.a s390x-linux-gnu-ar cru libclean.a src/clean.o src/file_io.o src/write.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libclean.a s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc src/export_formats.cc: In member function 'virtual int PhylipVarAllExport::post_processing()': src/export_formats.cc:2360:22: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] 2360 | sprintf(s, "% 11lu", this->_seq_len); | ^ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc rm -f libpop.a s390x-linux-gnu-ar cru libpop.a src/export_formats.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libpop.a s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/stacks-2.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>/stacks-2.41+dfsg' make[2]: Leaving directory '/<>/stacks-2.41+dfsg' make[1]: Leaving directory '/<>/stacks-2.41+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.41\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/stacks-2.41+dfsg' make[3]: Entering directory '/<>/stacks-2.41+dfsg' make[4]: Entering directory '/<>/stacks-2.41+dfsg' /bin/mkdir -p '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /bin/mkdir -p '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/integrate_alignments.py scripts/count_fixed_catalog_snps.py scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb '/<>/stacks-2.41+dfsg/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>/stacks-2.41+dfsg' sed -e 's,_VERSION_,2.41,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl > /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl.subst /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.41,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl > /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl.subst /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.41,' /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments rm -f /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments.bkp chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/stacks-2.41+dfsg/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>/stacks-2.41+dfsg' make[4]: Leaving directory '/<>/stacks-2.41+dfsg' make[3]: Leaving directory '/<>/stacks-2.41+dfsg' make[2]: Leaving directory '/<>/stacks-2.41+dfsg' make[1]: Leaving directory '/<>/stacks-2.41+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/stacks-2.41+dfsg' mkdir -p debian/stacks/usr/lib/stacks mv debian/stacks/usr/bin debian/stacks/usr/lib/stacks cd debian/stacks/usr/lib/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>/stacks-2.41+dfsg' dh_link mkdir -p debian/stacks/usr/lib/debian-med/bin cd debian/stacks/usr/lib/debian-med/bin && \ for f in `ls /<>/stacks-2.41+dfsg/debian/stacks/usr/lib/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>/stacks-2.41+dfsg' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'stacks' in '../stacks_2.41+dfsg-1_s390x.deb'. dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.41+dfsg-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../stacks_2.41+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-28T11:40:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-a3apSb/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-stacks-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-a3apSb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a3apSb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-a3apSb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a3apSb/apt_archive ./ Sources [785 B] Get:5 copy:/<>/resolver-a3apSb/apt_archive ./ Packages [859 B] Fetched 2607 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8520 kB of archives. After this operation, 23.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-a3apSb/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-1 [34.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.19.0 [1256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8520 kB in 0s (27.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19369 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../24-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../28-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../33-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../34-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../35-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../36-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../37-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../38-libnumber-compare-perl_0.03-1_all.deb ... Unpacking libnumber-compare-perl (0.03-1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../39-libtext-glob-perl_0.10-1_all.deb ... Unpacking libtext-glob-perl (0.10-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../40-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../41-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../42-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../43-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../44-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../45-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../46-libio-async-perl_0.74-1_all.deb ... Unpacking libio-async-perl (0.74-1) ... Selecting previously unselected package liblinux-epoll-perl. Preparing to unpack .../47-liblinux-epoll-perl_0.016-1+b1_amd64.deb ... Unpacking liblinux-epoll-perl (0.016-1+b1) ... Selecting previously unselected package libio-async-loop-epoll-perl. Preparing to unpack .../48-libio-async-loop-epoll-perl_0.20-1_all.deb ... Unpacking libio-async-loop-epoll-perl (0.20-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../49-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../50-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../51-liblist-compare-perl_0.53-1_all.deb ... Unpacking liblist-compare-perl (0.53-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../52-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../53-librole-tiny-perl_2.000006-1_all.deb ... Unpacking librole-tiny-perl (2.000006-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../54-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../55-libsub-quote-perl_2.006003-1_all.deb ... Unpacking libsub-quote-perl (2.006003-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../56-libmoo-perl_2.003004-2_all.deb ... Unpacking libmoo-perl (2.003004-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../57-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../58-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../59-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../60-libtype-tiny-perl_1.004004-1_all.deb ... Unpacking libtype-tiny-perl (1.004004-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../61-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../62-libyaml-libyaml-perl_0.80+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.80+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../63-patchutils_0.3.4-2+b1_amd64.deb ... Unpacking patchutils (0.3.4-2+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../64-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../65-lintian_2.19.0_all.deb ... Unpacking lintian (2.19.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:s390x. Preparing to unpack .../66-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.29.0-2) ... Setting up libfuture-perl (0.41-1) ... Setting up libyaml-libyaml-perl (0.80+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.74-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.016-1+b1) ... Setting up diffstat (1.62-1+b1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up libnet-dns-perl (1.20-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up lintian (2.19.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.41+dfsg-1_s390x.changes: --------------------------------- Format: 1.8 Date: Fri, 12 Jul 2019 20:40:33 +0200 Source: stacks Binary: stacks stacks-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.41+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.41+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * dh_auto_install --no-parallel * Removed stacks-web package since the code for the web service was removed from upstream source and the package has no active users according to popcon anyway * Python3 port of two simple scripts using 2to3 Checksums-Sha1: 8c618fc442ebe2bdec66a6b3d421172620deccaa 27985680 stacks-dbgsym_2.41+dfsg-1_s390x.deb 2b2bbc02cf513b67b41e643b934675eb20147aaa 5527 stacks_2.41+dfsg-1_s390x.buildinfo cc8c57cdecb61732ecf5e4fbc63df32c14c21ae3 918408 stacks_2.41+dfsg-1_s390x.deb Checksums-Sha256: 6a9b7c1c84dac5a2f8a582352968b37136d59e6fcef7a9336ba12629f9102fe0 27985680 stacks-dbgsym_2.41+dfsg-1_s390x.deb c93c357c202a1fb252dab0d4d620499179b1c8e34633592b85927c3ffe8d64c4 5527 stacks_2.41+dfsg-1_s390x.buildinfo 610976dfc677519f3e345d6fffcd4aa6e3d4652db66f594ab842f0edcc5af61a 918408 stacks_2.41+dfsg-1_s390x.deb Files: c67d1253e424abe88dde32a8e0bc8f17 27985680 debug optional stacks-dbgsym_2.41+dfsg-1_s390x.deb 70be1efd18087333310a6ce84e8937b0 5527 science optional stacks_2.41+dfsg-1_s390x.buildinfo a1d9fab86ce1fcbb38fb89bc4af0eed2 918408 science optional stacks_2.41+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks Architecture: s390x Version: 2.41+dfsg-1 Checksums-Md5: c67d1253e424abe88dde32a8e0bc8f17 27985680 stacks-dbgsym_2.41+dfsg-1_s390x.deb a1d9fab86ce1fcbb38fb89bc4af0eed2 918408 stacks_2.41+dfsg-1_s390x.deb Checksums-Sha1: 8c618fc442ebe2bdec66a6b3d421172620deccaa 27985680 stacks-dbgsym_2.41+dfsg-1_s390x.deb cc8c57cdecb61732ecf5e4fbc63df32c14c21ae3 918408 stacks_2.41+dfsg-1_s390x.deb Checksums-Sha256: 6a9b7c1c84dac5a2f8a582352968b37136d59e6fcef7a9336ba12629f9102fe0 27985680 stacks-dbgsym_2.41+dfsg-1_s390x.deb 610976dfc677519f3e345d6fffcd4aa6e3d4652db66f594ab842f0edcc5af61a 918408 stacks_2.41+dfsg-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 28 Aug 2019 11:39:59 +0000 Build-Path: /<>/stacks-2.41+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190821-2), binutils-common (= 2.32.51.20190821-2), binutils-x86-64-linux-gnu (= 2.32.51.20190821-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.7), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3), cpp-8 (= 8.3.0-21), cpp-9 (= 9.2.1-4), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.5.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.5.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:9.2.1-3), g++-9 (= 9.2.1-4), gcc (= 4:9.2.1-3), gcc-8 (= 8.3.0-21), gcc-8-base (= 8.3.0-21), gcc-9 (= 9.2.1-4), gcc-9-base (= 9.2.1-4), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.2.1-4), libatomic1 (= 9.2.1-4), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbam-dev (= 0.1.19-4), libbinutils (= 2.32.51.20190821-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-4), libcom-err2 (= 1.45.3-4), libcroco3 (= 0.6.13-1), libcurl3-gnutls (= 7.65.3-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdeflate0 (= 1.3-1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.5.0-1), libgcc-8-dev (= 8.3.0-21), libgcc-9-dev (= 9.2.1-4), libgcc1 (= 1:9.2.1-4), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-4), libgomp1 (= 9.2.1-4), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhogweed4 (= 3.4.1-1+b1), libhts-dev (= 1.9-11), libhts2 (= 1.9-11), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-1), libisl19 (= 0.20-2), libitm1 (= 9.2.1-4), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.2.1-4), liblz4-1 (= 1.8.3-1+b1), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-21), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnettle6 (= 3.4.1-1+b1), libnghttp2-14 (= 1.39.2-1), libp11-kit0 (= 0.23.16.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.2.1-4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libsparsehash-dev (= 2.0.3-1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1c-1), libstdc++-9-dev (= 9.2.1-4), libstdc++6 (= 9.2.1-4), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-4), libtasn1-6 (= 4.14-2), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-10), libtsan0 (= 9.2.1-4), libubsan1 (= 9.2.1-4), libuchardet0 (= 0.0.6-3), libudev1 (= 242-4), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.9-2), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), samtools (= 1.9-5), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96~beta-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1562956833" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ stacks-dbgsym_2.41+dfsg-1_s390x.deb ----------------------------------- new Debian package, version 2.0. size 27985680 bytes: control archive=1092 bytes. 786 bytes, 12 lines control 1248 bytes, 12 lines md5sums Package: stacks-dbgsym Source: stacks Version: 2.41+dfsg-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 28558 Depends: stacks (= 2.41+dfsg-1) Section: debug Priority: optional Description: debug symbols for stacks Build-Ids: 01422b6f1154d06dac1f540dce094f1563b75393 190ad49063999c1ca1be83cf947d69ae1e352394 1d670abaec1380bb2d1a0225e724a27b45a82837 592628cf1348d8f70bcd62a086ea789fad29e881 7de543d7ddf7455bb546d0984469a2832dec0921 871108f21a85ab2434fdf1876915cc0c8c355b3d 8d81dc8e5f0d60020e64081ad3bad5b3b46e3bc8 c357e174341b998c8c8c5573d6d9af506ecf724a dcda5b29df6d703efa207083bd44f484adbce043 f96226eafeb3e74e51c9c7a3ce4c69531826ba26 fbd1cdfdba111484dc88509d6b36cdd8ea4f9c6e drwxr-xr-x root/root 0 2019-07-12 18:40 ./ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/01/ -rw-r--r-- root/root 1168856 2019-07-12 18:40 ./usr/lib/debug/.build-id/01/422b6f1154d06dac1f540dce094f1563b75393.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/19/ -rw-r--r-- root/root 2142096 2019-07-12 18:40 ./usr/lib/debug/.build-id/19/0ad49063999c1ca1be83cf947d69ae1e352394.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 1881672 2019-07-12 18:40 ./usr/lib/debug/.build-id/1d/670abaec1380bb2d1a0225e724a27b45a82837.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/59/ -rw-r--r-- root/root 4724152 2019-07-12 18:40 ./usr/lib/debug/.build-id/59/2628cf1348d8f70bcd62a086ea789fad29e881.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/7d/ -rw-r--r-- root/root 2183120 2019-07-12 18:40 ./usr/lib/debug/.build-id/7d/e543d7ddf7455bb546d0984469a2832dec0921.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/87/ -rw-r--r-- root/root 2414672 2019-07-12 18:40 ./usr/lib/debug/.build-id/87/1108f21a85ab2434fdf1876915cc0c8c355b3d.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/8d/ -rw-r--r-- root/root 2166480 2019-07-12 18:40 ./usr/lib/debug/.build-id/8d/81dc8e5f0d60020e64081ad3bad5b3b46e3bc8.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/c3/ -rw-r--r-- root/root 3013880 2019-07-12 18:40 ./usr/lib/debug/.build-id/c3/57e174341b998c8c8c5573d6d9af506ecf724a.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 4481432 2019-07-12 18:40 ./usr/lib/debug/.build-id/dc/da5b29df6d703efa207083bd44f484adbce043.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 1562688 2019-07-12 18:40 ./usr/lib/debug/.build-id/f9/6226eafeb3e74e51c9c7a3ce4c69531826ba26.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 2271456 2019-07-12 18:40 ./usr/lib/debug/.build-id/fb/d1cdfdba111484dc88509d6b36cdd8ea4f9c6e.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 1204032 2019-07-12 18:40 ./usr/lib/debug/.dwz/s390x-linux-gnu/stacks.debug drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/share/doc/stacks-dbgsym -> stacks stacks_2.41+dfsg-1_s390x.deb ---------------------------- new Debian package, version 2.0. size 918408 bytes: control archive=1512 bytes. 991 bytes, 21 lines control 1541 bytes, 23 lines md5sums Package: stacks Version: 2.41+dfsg-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5502 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 6), libhts2 (>= 1.0), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl, python3 Conflicts: stacks-web Replaces: stacks-web Provides: stacks-web Section: science Priority: optional Homepage: http://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/bin/ -rwxr-xr-x root/root 771 2019-07-12 18:40 ./usr/bin/stacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/count_fixed_catalog_snps.py -> ../../stacks/bin/count_fixed_catalog_snps.py lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/integrate_alignments.py -> ../../stacks/bin/integrate_alignments.py lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/stacks/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/ -rwxr-xr-x root/root 369152 2019-07-12 18:40 ./usr/lib/stacks/bin/clone_filter -rwxr-xr-x root/root 8652 2019-07-12 18:40 ./usr/lib/stacks/bin/count_fixed_catalog_snps.py -rwxr-xr-x root/root 483464 2019-07-12 18:40 ./usr/lib/stacks/bin/cstacks lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 22296 2019-07-12 18:40 ./usr/lib/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 790008 2019-07-12 18:40 ./usr/lib/stacks/bin/gstacks -rwxr-xr-x root/root 10879 2019-07-12 18:40 ./usr/lib/stacks/bin/integrate_alignments.py -rwxr-xr-x root/root 299432 2019-07-12 18:40 ./usr/lib/stacks/bin/kmer_filter -rwxr-xr-x root/root 393392 2019-07-12 18:40 ./usr/lib/stacks/bin/phasedstacks -rwxr-xr-x root/root 909576 2019-07-12 18:40 ./usr/lib/stacks/bin/populations -rwxr-xr-x root/root 437176 2019-07-12 18:40 ./usr/lib/stacks/bin/process_radtags -rwxr-xr-x root/root 382288 2019-07-12 18:40 ./usr/lib/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2019-07-12 18:40 ./usr/lib/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 14547 2019-07-12 18:40 ./usr/lib/stacks/bin/ref_map.pl -rwxr-xr-x root/root 475080 2019-07-12 18:40 ./usr/lib/stacks/bin/sstacks -rwxr-xr-x root/root 773 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1207 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-gdb -rwxr-xr-x root/root 5752 2019-07-12 18:40 ./usr/lib/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 462152 2019-07-12 18:40 ./usr/lib/stacks/bin/tsv2bam -rwxr-xr-x root/root 488368 2019-07-12 18:40 ./usr/lib/stacks/bin/ustacks drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-12 18:40 ./usr/share/doc/stacks/ -rw-r--r-- root/root 1451 2019-07-12 18:40 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1523 2019-07-12 18:40 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 27833 2019-07-08 18:29 ./usr/share/doc/stacks/changelog.gz -rw-r--r-- root/root 1383 2019-07-12 18:40 ./usr/share/doc/stacks/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 490056 Build-Time: 335 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 29 Job: stacks_2.41+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: stacks Package-Time: 376 Source-Version: 2.41+dfsg-1 Space: 490056 Status: successful Version: 2.41+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-08-28T11:40:00Z Build needed 00:06:16, 490056k disk space