sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | stacks 2.55+dfsg-1 (mips64el) Wed, 03 Feb 2021 21:50:13 +0000 | +==============================================================================+ Package: stacks Version: 2.55+dfsg-1 Source Version: 2.55+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5b397110-9cc2-446c-852b-0f3db44e3db2' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-gGQDEu/resolver-FzqkWL' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-02-03-2000.13-F-2021-02-03-0800.29.pdiff [48.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-02-03-2000.13-F-2021-02-03-0800.29.pdiff [42.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-02-03-2000.13-F-2021-02-03-0800.29.pdiff [48.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-02-03-2000.13-F-2021-02-03-0800.29.pdiff [42.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8291 kB] Fetched 8661 kB in 4s (2146 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libpam-modules libpam-modules-bin libpam-runtime libpam0g libsystemd0 libudev1 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1303 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libpam0g amd64 1.4.0-4 [129 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libpam-modules-bin amd64 1.4.0-4 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libpam-modules amd64 1.4.0-4 [321 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 247.3-1 [375 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpam-runtime all 1.4.0-4 [205 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 247.3-1 [167 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1303 kB in 0s (41.9 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/stacks.git Please use: git clone https://salsa.debian.org/med-team/stacks.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 331 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main stacks 2.55+dfsg-1 (dsc) [2044 B] Get:2 http://debian.oregonstate.edu/debian unstable/main stacks 2.55+dfsg-1 (tar) [322 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main stacks 2.55+dfsg-1 (diff) [7540 B] Fetched 331 kB in 0s (17.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/stacks-gGQDEu/stacks-2.55+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-gGQDEu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1911 B in 0s (72.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-8-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbam-dev:mips64el libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libdpkg-perl libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-8-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed6:mips64el libhts-dev:mips64el libhts3:mips64el libicu67 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncurses6:mips64el libnettle8:mips64el libnghttp2-14:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libperl5.32 libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libsparsehash-dev libssh2-1:mips64el libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-8-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf samtools:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mips64el-linux-gnuabi64 gcc-10-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn11-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el libssh2-1-dev:mips64el pkg-config:mips64el gnupg git bzr rng-tools:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libstdc++-10-doc libstdc++-8-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl cwltool:mips64el Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:mips64el libnss-nisplus:mips64el ca-certificates:mips64el libfile-fcntllock-perl libarchive-cpio-perl libgpg-error-l10n:mips64el krb5-locales:mips64el libldap-common:mips64el libgpm2:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-8-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbam-dev:mips64el libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libdpkg-perl libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-8-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed6:mips64el libhts-dev:mips64el libhts3:mips64el libicu67 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncurses6:mips64el libnettle8:mips64el libnghttp2-14:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libperl5.32 libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libsparsehash-dev libssh2-1:mips64el libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-8-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf samtools:mips64el sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 418 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-6 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-2 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-2 [4101 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-2 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.1-6 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35.1-6cross1 [2358 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-9 [2346 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.7.1 [1537 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.7.1 [2149 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64-base amd64 10.2.1-3cross1 [201 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mips64el-linux-gnuabi64 amd64 10.2.1-3cross1 [6982 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [16.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.1-3cross1 [196 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-6cross1 [1311 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10.2.1-3cross1 [69.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10.2.1-3cross1 [88.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10.2.1-3cross1 [7368 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mips64el-cross all 10.2.1-3cross1 [270 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64 amd64 10.2.1-3cross1 [13.6 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1480 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10.2.1-3cross1 [392 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.9.15-1cross1 [1334 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-6cross1 [2202 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mips64el-cross all 10.2.1-3cross1 [1768 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mips64el-linux-gnuabi64 amd64 10.2.1-3cross1 [7652 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1192 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.2 [189 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.10.0-1 [15.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182+20210203-1 [165 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20210126-1 [174 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.2 [1012 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-8-base mips64el 8.4.0-7 [195 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.1-6 [69.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.17-1 [93.1 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-9 [2545 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.1-6 [7484 B] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libbam-dev mips64el 0.1.19+dfsg-1 [124 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libbrotli1 mips64el 1.0.9-2+b2 [289 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-4 [47.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.10.12-1 [1274 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.17-1 [115 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.7-1 [72.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-4 [63.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-4 [120 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1i-3 [1148 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-4 [328 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-4 [150 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.3.1-1 [74.0 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.3.1-1 [199 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-9 [2203 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.2.1+dfsg-1 [553 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle8 mips64el 3.7-2 [276 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed6 mips64el 3.7-2 [311 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-4 [371 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.3.0-5 [85.0 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libffi7 mips64el 3.3-5 [22.6 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.22-1 [278 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.16.0-2 [52.6 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.7.0-5 [1191 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-2 [68.3 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-2 [102 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.57+dfsg-1 [211 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.42.0-1 [73.8 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.21.0-1.1 [55.0 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b2 [56.0 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.38-2 [74.2 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.7-2 [502 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.9.0-2 [150 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.74.0-1 [313 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl4-gnutls-dev mips64el 7.74.0-1 [442 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.7-1 [47.6 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate-dev mips64el 1.7-1 [46.2 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.1-6 [90.2 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-8-dev mips64el 8.4.0-7 [234 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.5-1.0 [166 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mips64el libhts3 mips64el 1.11-4 [350 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.5-1.0 [233 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.11-4 [3878 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mips64el libtinfo6 mips64el 6.2+20201114-2 [334 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el libncurses6 mips64el 6.2+20201114-2 [90.2 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.1-6 [433 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-8-dev mips64el 8.4.0-7 [1582 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mips64el samtools mips64el 1.11-1 [531 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 106 MB in 2s (63.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10482 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-6_amd64.deb ... Unpacking bsdextrautils (2.36.1-6) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-2_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-2) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-2_amd64.deb ... Unpacking perl (5.32.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:mips64el. Preparing to unpack .../009-gcc-10-base_10.2.1-6_mips64el.deb ... Unpacking gcc-10-base:mips64el (10.2.1-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../012-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../016-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../022-binutils-mips64el-linux-gnuabi64_2.35.1-6cross1_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.35.1-6cross1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../023-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../024-libtirpc-dev_1.3.1-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.1-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../025-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../026-libc6-dev_2.31-9_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-9) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../027-libstdc++-10-dev_10.2.1-6_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-6) ... Selecting previously unselected package g++-10. Preparing to unpack .../028-g++-10_10.2.1-6_amd64.deb ... Unpacking g++-10 (10.2.1-6) ... Selecting previously unselected package g++. Preparing to unpack .../029-g++_4%3a10.2.1-1_amd64.deb ... Unpacking g++ (4:10.2.1-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../030-libdpkg-perl_1.20.7.1_all.deb ... Unpacking libdpkg-perl (1.20.7.1) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../031-dpkg-dev_1.20.7.1_all.deb ... Unpacking dpkg-dev (1.20.7.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../032-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-10-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../033-gcc-10-mips64el-linux-gnuabi64-base_10.2.1-3cross1_amd64.deb ... Unpacking gcc-10-mips64el-linux-gnuabi64-base:amd64 (10.2.1-3cross1) ... Selecting previously unselected package cpp-10-mips64el-linux-gnuabi64. Preparing to unpack .../034-cpp-10-mips64el-linux-gnuabi64_10.2.1-3cross1_amd64.deb ... Unpacking cpp-10-mips64el-linux-gnuabi64 (10.2.1-3cross1) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../035-cpp-mips64el-linux-gnuabi64_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../036-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base-mipsen. Preparing to unpack .../037-gcc-10-cross-base-mipsen_10.2.1-3cross1_all.deb ... Unpacking gcc-10-cross-base-mipsen (10.2.1-3cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../038-libc6-mips64el-cross_2.31-6cross1_all.deb ... Unpacking libc6-mips64el-cross (2.31-6cross1) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../039-libgcc-s1-mips64el-cross_10.2.1-3cross1_all.deb ... Unpacking libgcc-s1-mips64el-cross (10.2.1-3cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../040-libgomp1-mips64el-cross_10.2.1-3cross1_all.deb ... Unpacking libgomp1-mips64el-cross (10.2.1-3cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../041-libatomic1-mips64el-cross_10.2.1-3cross1_all.deb ... Unpacking libatomic1-mips64el-cross (10.2.1-3cross1) ... Selecting previously unselected package libgcc-10-dev-mips64el-cross. Preparing to unpack .../042-libgcc-10-dev-mips64el-cross_10.2.1-3cross1_all.deb ... Unpacking libgcc-10-dev-mips64el-cross (10.2.1-3cross1) ... Selecting previously unselected package gcc-10-mips64el-linux-gnuabi64. Preparing to unpack .../043-gcc-10-mips64el-linux-gnuabi64_10.2.1-3cross1_amd64.deb ... Unpacking gcc-10-mips64el-linux-gnuabi64 (10.2.1-3cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../044-gcc-mips64el-linux-gnuabi64_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Selecting previously unselected package libstdc++6-mips64el-cross. 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Setting up gcc-10-base:mips64el (10.2.1-6) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up gcc-10-cross-base-mipsen (10.2.1-3cross1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up gcc-8-base:mips64el (8.4.0-7) ... Setting up autopoint (0.21-4) ... Setting up libbam-dev:mips64el (0.1.19+dfsg-1) ... Setting up libperl5.32:amd64 (5.32.1-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-9) ... Setting up linux-libc-dev-mips64el-cross (5.9.15-1cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up libgomp1-mips64el-cross (10.2.1-3cross1) ... Setting up libgcc-s1-mips64el-cross (10.2.1-3cross1) ... Setting up libelf1:amd64 (0.182+20210203-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gettext (0.21-4) ... Setting up libatomic1-mips64el-cross (10.2.1-3cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-2) ... Setting up libc6-dev-mips64el-cross (2.31-6cross1) ... Setting up libgcc-10-dev-mips64el-cross (10.2.1-3cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.7.1) ... Setting up autoconf (2.69-14) ... Setting up libstdc++6-mips64el-cross (10.2.1-3cross1) ... Setting up libstdc++-10-dev-mips64el-cross (10.2.1-3cross1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13+20210126-1) ... Setting up gcc-10-mips64el-linux-gnuabi64 (10.2.1-3cross1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up g++-10-mips64el-linux-gnuabi64 (10.2.1-3cross1) ... Setting up libdebhelper-perl (13.3.2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.7.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.10.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.10.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libcrypt1:mips64el (1:4.4.17-1) ... Setting up libgcc-s1:mips64el (10.2.1-6) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.31-9) ... Setting up libcrypt-dev:mips64el (1:4.4.17-1) ... Setting up libtasn1-6:mips64el (4.16.0-2) ... Setting up libbz2-1.0:mips64el (1.0.8-4) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:mips64el (10.2.1-6) ... Setting up libtinfo6:mips64el (6.2+20201114-2) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up liblzma5:mips64el (5.2.5-1.0) ... Setting up libgpg-error0:mips64el (1.38-2) ... Setting up libssl1.1:mips64el (1.1.1i-3) ... Setting up libbrotli1:mips64el (1.0.9-2+b2) ... Setting up libffi7:mips64el (3.3-5) ... Setting up libnghttp2-14:mips64el (1.42.0-1) ... Setting up libunistring2:mips64el (0.9.10-4) ... Setting up libdeflate0:mips64el (1.7-1) ... Setting up libgcrypt20:mips64el (1.8.7-2) ... Setting up debhelper (13.3.2) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mips64el (2.3.0-5) ... Setting up libcom-err2:mips64el (1.45.7-1) ... Setting up libgomp1:mips64el (10.2.1-6) ... Setting up libkrb5support0:mips64el (1.18.3-4) ... Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-2) ... Setting up libnettle8:mips64el (3.7-2) ... Setting up libgmp10:mips64el (2:6.2.1+dfsg-1) ... Setting up libncurses6:mips64el (6.2+20201114-2) ... Setting up libp11-kit0:mips64el (0.23.22-1) ... Setting up libatomic1:mips64el (10.2.1-6) ... Setting up libk5crypto3:mips64el (1.18.3-4) ... Setting up libgcc-8-dev:mips64el (8.4.0-7) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-2) ... Setting up liblzma-dev:mips64el (5.2.5-1.0) ... Setting up libssh2-1:mips64el (1.9.0-2) ... Setting up libkrb5-3:mips64el (1.18.3-4) ... Setting up libdeflate-dev:mips64el (1.7-1) ... Setting up libpsl5:mips64el (0.21.0-1.1) ... Setting up libhogweed6:mips64el (3.7-2) ... Setting up libgnutls30:mips64el (3.7.0-5) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:mips64el (1.18.3-4) ... Setting up libtirpc3:mips64el (1.3.1-1) ... Setting up libldap-2.4-2:mips64el (2.4.57+dfsg-1) ... Setting up libcurl3-gnutls:mips64el (7.74.0-1) ... Setting up libcurl4-gnutls-dev:mips64el (7.74.0-1) ... Setting up libtirpc-dev:mips64el (1.3.1-1) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libhts3:mips64el (1.11-4) ... Setting up samtools:mips64el (1.11-1) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.31-9) ... Setting up libstdc++-8-dev:mips64el (8.4.0-7) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libhts-dev:mips64el (1.11-4) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-7 dpkg-dev_1.20.7.1 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-9 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mips64el-cross_10.2.1-3cross1 libstdc++-8-dev_8.4.0-7 libstdc++6_10.2.1-6 libstdc++6-mips64el-cross_10.2.1-3cross1 linux-libc-dev_5.10.12-1 Package versions: adduser_3.118 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7 binutils-common_2.35.1-7 binutils-mips64el-linux-gnuabi64_2.35.1-6cross1 binutils-x86-64-linux-gnu_2.35.1-7 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-6 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-mips64el-linux-gnuabi64_10.2.1-3cross1 cpp-8_8.4.0-7 cpp-mips64el-linux-gnuabi64_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-mips64el_12.9 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.2 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-5 dpkg_1.20.7.1 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.7.1 dwz_0.13+20210126-1 e2fsprogs_1.45.7-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-6 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-mips64el-linux-gnuabi64_10.2.1-3cross1 g++-mips64el-linux-gnuabi64_4:10.2.0-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base-mipsen_10.2.1-3cross1 gcc-10-mips64el-linux-gnuabi64_10.2.1-3cross1 gcc-10-mips64el-linux-gnuabi64-base_10.2.1-3cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.3.0-21 gcc-mips64el-linux-gnuabi64_4:10.2.0-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libasan5_9.3.0-21 libasan6_10.2.1-6 libatomic1_10.2.1-6 libatomic1-mips64el-cross_10.2.1-3cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbam-dev_0.1.19+dfsg-1 libbinutils_2.35.1-7 libblkid1_2.36.1-6 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-9 libc-dev-bin_2.31-9 libc6_2.31-9 libc6-dev_2.31-9 libc6-dev-mips64el-cross_2.31-6cross1 libc6-mips64el-cross_2.31-6cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.45.7-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7 libctf0_2.35.1-7 libcurl3-gnutls_7.74.0-1 libcurl4-gnutls-dev_7.74.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.7.1 libelf1_0.182+20210203-1 libext2fs2_1.45.7-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-6 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.10.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-mips64el-cross_10.2.1-3cross1 libgcc-8-dev_8.4.0-7 libgcc-s1_10.2.1-6 libgcc-s1-mips64el-cross_10.2.1-3cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6 libgomp1-mips64el-cross_10.2.1-3cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7-2 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-6 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.57+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-1 liblzma-dev_5.2.5-1.0 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-6 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7-2 libnghttp2-14_1.42.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-4 libpam-modules-bin_1.4.0-4 libpam-runtime_1.4.0-4 libpam0g_1.4.0-4 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-2 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libquadmath0_10.2.1-6 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1 libselinux1_3.1-2+b2 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-6 libsparsehash-dev_2.0.3-2 libss2_1.45.7-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1i-3 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mips64el-cross_10.2.1-3cross1 libstdc++-8-dev_8.4.0-7 libstdc++6_10.2.1-6 libstdc++6-mips64el-cross_10.2.1-3cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libuchardet0_0.0.7-1 libudev1_247.3-1 libunistring2_0.9.10-4 libuuid1_2.36.1-6 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.3+b1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.12-1 linux-libc-dev-mips64el-cross_5.9.15-1cross1 login_1:4.8.1-1 logsave_1.45.7-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-6 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-2 perl-base_5.32.1-2 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-2 po-debconf_1.0.21+nmu1 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-6 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: stacks Binary: stacks Architecture: any Version: 2.55+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://creskolab.uoregon.edu/stacks/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Package-List: stacks deb science optional arch=any Checksums-Sha1: b524951318872462d5280b93181c625602da55c0 321808 stacks_2.55+dfsg.orig.tar.xz ecb80cedb021e10b33ea6fcc45b25780fb6fce8e 7540 stacks_2.55+dfsg-1.debian.tar.xz Checksums-Sha256: 4143458fdf55874bfcd0273fb8d4c8f54fcf57c6b27ac56f907296fc4e5878cf 321808 stacks_2.55+dfsg.orig.tar.xz dbf29f8698859be6556aa6d6a33020f9871464af671a7cfd8383db30e04da2b0 7540 stacks_2.55+dfsg-1.debian.tar.xz Files: becc7b543cb6d25407b164a010819cac 321808 stacks_2.55+dfsg.orig.tar.xz 2a2be29dfd0b8a45d91e2b115d2de149 7540 stacks_2.55+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/7NPgUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEjABAAmcDKy5PrttUyaolrotV3bVKhUFtU 1cM2IW7j/uQiLiMXTjyZWrDjX63GRkyQvb23fjxTc8mh7AyuzGrSi9LaUjJvopdD 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verify signature on ./stacks_2.55+dfsg-1.dsc dpkg-source: info: extracting stacks in /<> dpkg-source: info: unpacking stacks_2.55+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.55+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying RisR.patch dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5b397110-9cc2-446c-852b-0f3db44e3db2 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.55+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:33: installing 'config/ar-lib' configure.ac:28: installing 'config/compile' configure.ac:7: installing 'config/install-sh' configure.ac:7: installing 'config/missing' Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mips64el-linux-gnuabi64-g++... none checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking whether mips64el-linux-gnuabi64-g++ supports C++11 features by default... yes checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking the archiver (mips64el-linux-gnuabi64-ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... mips64el-linux-gnuabi64-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for mips64el-linux-gnuabi64-gcc option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater. no checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc rm -f libcore.a mips64el-linux-gnuabi64-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libcore.a mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc rm -f libclean.a mips64el-linux-gnuabi64-ar cru libclean.a src/clean.o src/file_io.o src/write.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libclean.a mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mapping_utils.o src/mapping_utils.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc rm -f libpop.a mips64el-linux-gnuabi64-ar cru libpop.a src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o mips64el-linux-gnuabi64-ar: `u' modifier ignored since `D' is the default (see `U') mips64el-linux-gnuabi64-ranlib libpop.a mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.55\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/debian/stacks/usr/bin' /bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/integrate_alignments.py scripts/count_fixed_catalog_snps.py scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<>/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>' sed -e 's,_VERSION_,2.55,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/denovo_map.pl > /<>/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/debian/stacks/usr/bin/denovo_map.pl.subst /<>/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.55,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/ref_map.pl > /<>/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/debian/stacks/usr/bin/ref_map.pl.subst /<>/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.55,' /<>/debian/stacks/usr/bin/stacks-integrate-alignments sed -i.bkp -e 's,_VERSION_,2.55,' /<>/debian/stacks/usr/bin/stacks-samtools-tview rm -f /<>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp rm -f /<>/debian/stacks/usr/bin/stacks-samtools-tview.bkp chmod +x /<>/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/stacks/usr/lib/stacks mv debian/stacks/usr/bin debian/stacks/usr/lib/stacks cd debian/stacks/usr/lib/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link mkdir -p debian/stacks/usr/lib/debian-med/bin cd debian/stacks/usr/lib/debian-med/bin && \ for f in `ls /<>/debian/stacks/usr/lib/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'stacks' in '../stacks_2.55+dfsg-1_mips64el.deb'. dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.55+dfsg-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../stacks_2.55+dfsg-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-02-03T21:56:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.55+dfsg-1_mips64el.changes: ------------------------------------ Format: 1.8 Date: Sun, 10 Jan 2021 17:37:28 +0530 Source: stacks Binary: stacks stacks-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.55+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.55+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 6a4757d22367bb748e8d8e8e1249a0b52a867ba4 27323264 stacks-dbgsym_2.55+dfsg-1_mips64el.deb c44da66d3f842844b9f8eb64bcdd8e17eb5c1b75 5629 stacks_2.55+dfsg-1_mips64el.buildinfo 40b58bf740666fa52a9b1becd4db0e906bc2a292 1014468 stacks_2.55+dfsg-1_mips64el.deb Checksums-Sha256: 6c175b16a437495b0d807897d1f9c00897744c8a1b1ffea9cfd9a7271151a231 27323264 stacks-dbgsym_2.55+dfsg-1_mips64el.deb 5899c718b1f1b61b28e70fa5b8c7b55118c6d5b74d3f26bb3f36fa7f82990d3d 5629 stacks_2.55+dfsg-1_mips64el.buildinfo 56cc8726e7e7c1872d554644be5ec8f0adc4195d6108a0960653acc4c5248319 1014468 stacks_2.55+dfsg-1_mips64el.deb Files: 446a6ff89c51564fb7d91c7529f2f48e 27323264 debug optional stacks-dbgsym_2.55+dfsg-1_mips64el.deb 59a52b331accc4a4d1c84706444e1a41 5629 science optional stacks_2.55+dfsg-1_mips64el.buildinfo ebefa0cdd1764d156ae4e790ddb37b06 1014468 science optional stacks_2.55+dfsg-1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks stacks-dbgsym Architecture: mips64el Version: 2.55+dfsg-1 Checksums-Md5: 446a6ff89c51564fb7d91c7529f2f48e 27323264 stacks-dbgsym_2.55+dfsg-1_mips64el.deb ebefa0cdd1764d156ae4e790ddb37b06 1014468 stacks_2.55+dfsg-1_mips64el.deb Checksums-Sha1: 6a4757d22367bb748e8d8e8e1249a0b52a867ba4 27323264 stacks-dbgsym_2.55+dfsg-1_mips64el.deb 40b58bf740666fa52a9b1becd4db0e906bc2a292 1014468 stacks_2.55+dfsg-1_mips64el.deb Checksums-Sha256: 6c175b16a437495b0d807897d1f9c00897744c8a1b1ffea9cfd9a7271151a231 27323264 stacks-dbgsym_2.55+dfsg-1_mips64el.deb 56cc8726e7e7c1872d554644be5ec8f0adc4195d6108a0960653acc4c5248319 1014468 stacks_2.55+dfsg-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 03 Feb 2021 21:56:37 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1-2), binutils (= 2.35.1-7), binutils-common (= 2.35.1-7), binutils-x86-64-linux-gnu (= 2.35.1-7), bsdextrautils (= 2.36.1-6), bsdutils (= 1:2.36.1-6), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20200708+dd9ef66-5), debconf (= 1.5.74), debhelper (= 13.3.2), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.10.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.7.1), dpkg-dev (= 1.20.7.1), dwz (= 0.13+20210126-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-6), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbam-dev (= 0.1.19+dfsg-1), libbinutils (= 2.35.1-7), libblkid1 (= 2.36.1-6), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-9), libc-dev-bin (= 2.31-9), libc6 (= 2.31-9), libc6-dev (= 2.31-9), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.45.7-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-7), libctf0 (= 2.35.1-7), libcurl3-gnutls (= 7.74.0-1), libcurl4-gnutls-dev (= 7.74.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.256), libdebhelper-perl (= 13.3.2), libdeflate-dev (= 1.7-1), libdeflate0 (= 1.7-1), libdpkg-perl (= 1.20.7.1), libelf1 (= 0.182+20210203-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.10.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.0-5), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libhogweed6 (= 3.7-2), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libicu67 (= 67.1-6), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libldap-2.4-2 (= 2.4.57+dfsg-1), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-1), liblzma-dev (= 5.2.5-1.0), liblzma5 (= 5.2.5-1.0), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-6), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libnettle8 (= 3.7-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-4), libpam-modules-bin (= 1.4.0-4), libpam-runtime (= 1.4.0-4), libpam0g (= 1.4.0-4), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-2), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1), libquadmath0 (= 10.2.1-6), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-2+b2), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.36.1-6), libsparsehash-dev (= 2.0.3-2), libssh2-1 (= 1.9.0-2), libssl1.1 (= 1.1.1i-3), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-6), libxml2 (= 2.9.10+dfsg-6.3+b1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.10.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-2), perl-base (= 5.32.1-2), perl-modules-5.32 (= 5.32.1-2), po-debconf (= 1.0.21+nmu1), samtools (= 1.11-1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-6), xz-utils (= 5.2.5-1.0), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610280448" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ stacks-dbgsym_2.55+dfsg-1_mips64el.deb -------------------------------------- new Debian package, version 2.0. size 27323264 bytes: control archive=1104 bytes. 789 bytes, 12 lines control 1256 bytes, 12 lines md5sums Package: stacks-dbgsym Source: stacks Version: 2.55+dfsg-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 28345 Depends: stacks (= 2.55+dfsg-1) Section: debug Priority: optional Description: debug symbols for stacks Build-Ids: 02fcf67f9fbdd1067f6ff207dfc4b9a8c100d71e 34163a54dc91c5c318f674d3cdf1bc925526b02d 36457c55ac9042b025c56ab14c5c43eb21dda466 3b778743437473edbe9d96cb09702a17e2266ab6 3c37eaa1bcc517363f795ef4effd53de1f15fde6 63038a124a1add69e4b8ead5b9b0ae071b8ab8ee ac694655fda17e09830128b14829134d0a2f2799 b776e12abeba5b76805b4d15a0beba277e359766 dbb4e7d95452fc9d6101539f074d31d590f5beba e4702994743f304e4a435f10b0a0e2a1a3e66e4b f4d7e7da6289b6fc4ae4c4b85651fad7eea94866 drwxr-xr-x root/root 0 2021-01-10 12:07 ./ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/02/ -rw-r--r-- root/root 2005488 2021-01-10 12:07 ./usr/lib/debug/.build-id/02/fcf67f9fbdd1067f6ff207dfc4b9a8c100d71e.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 1778776 2021-01-10 12:07 ./usr/lib/debug/.build-id/34/163a54dc91c5c318f674d3cdf1bc925526b02d.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/36/ -rw-r--r-- root/root 2104296 2021-01-10 12:07 ./usr/lib/debug/.build-id/36/457c55ac9042b025c56ab14c5c43eb21dda466.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 4614192 2021-01-10 12:07 ./usr/lib/debug/.build-id/3b/778743437473edbe9d96cb09702a17e2266ab6.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/3c/ -rw-r--r-- root/root 2135480 2021-01-10 12:07 ./usr/lib/debug/.build-id/3c/37eaa1bcc517363f795ef4effd53de1f15fde6.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/63/ -rw-r--r-- root/root 2050488 2021-01-10 12:07 ./usr/lib/debug/.build-id/63/038a124a1add69e4b8ead5b9b0ae071b8ab8ee.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/ac/ -rw-r--r-- root/root 1031168 2021-01-10 12:07 ./usr/lib/debug/.build-id/ac/694655fda17e09830128b14829134d0a2f2799.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 5270848 2021-01-10 12:07 ./usr/lib/debug/.build-id/b7/76e12abeba5b76805b4d15a0beba277e359766.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/db/ -rw-r--r-- root/root 2433872 2021-01-10 12:07 ./usr/lib/debug/.build-id/db/b4e7d95452fc9d6101539f074d31d590f5beba.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 2916472 2021-01-10 12:07 ./usr/lib/debug/.build-id/e4/702994743f304e4a435f10b0a0e2a1a3e66e4b.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.build-id/f4/ -rw-r--r-- root/root 1373000 2021-01-10 12:07 ./usr/lib/debug/.build-id/f4/d7e7da6289b6fc4ae4c4b85651fad7eea94866.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 1282656 2021-01-10 12:07 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/stacks.debug drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/share/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/share/doc/stacks-dbgsym -> stacks stacks_2.55+dfsg-1_mips64el.deb ------------------------------- new Debian package, version 2.0. size 1014468 bytes: control archive=1656 bytes. 1005 bytes, 21 lines control 1868 bytes, 27 lines md5sums Package: stacks Version: 2.55+dfsg-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 6873 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl, python3, littler Conflicts: stacks-web Replaces: stacks-web Provides: stacks-web Section: science Priority: optional Homepage: https://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks drwxr-xr-x root/root 0 2021-01-10 12:07 ./ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/bin/ -rwxr-xr-x root/root 771 2021-01-10 12:04 ./usr/bin/stacks drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/count_fixed_catalog_snps.py -> ../../stacks/bin/count_fixed_catalog_snps.py lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/integrate_alignments.py -> ../../stacks/bin/integrate_alignments.py lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/stacks/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/lib/stacks/bin/ -rwxr-xr-x root/root 456784 2021-01-10 12:07 ./usr/lib/stacks/bin/clone_filter -rwxr-xr-x root/root 8652 2021-01-10 12:07 ./usr/lib/stacks/bin/count_fixed_catalog_snps.py -rwxr-xr-x root/root 568976 2021-01-10 12:07 ./usr/lib/stacks/bin/cstacks lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 30259 2021-01-10 12:07 ./usr/lib/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 971400 2021-01-10 12:07 ./usr/lib/stacks/bin/gstacks -rwxr-xr-x root/root 10879 2021-01-10 12:07 ./usr/lib/stacks/bin/integrate_alignments.py -rwxr-xr-x root/root 351128 2021-01-10 12:07 ./usr/lib/stacks/bin/kmer_filter -rwxr-xr-x root/root 470696 2021-01-10 12:07 ./usr/lib/stacks/bin/phasedstacks -rwxr-xr-x root/root 1276128 2021-01-10 12:07 ./usr/lib/stacks/bin/populations -rwxr-xr-x root/root 543920 2021-01-10 12:07 ./usr/lib/stacks/bin/process_radtags -rwxr-xr-x root/root 452904 2021-01-10 12:07 ./usr/lib/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2021-01-10 12:07 ./usr/lib/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 15168 2021-01-10 12:07 ./usr/lib/stacks/bin/ref_map.pl -rwxr-xr-x root/root 560208 2021-01-10 12:07 ./usr/lib/stacks/bin/sstacks -rwxr-xr-x root/root 1040 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-count-reads-per-sample-per-locus -rwxr-xr-x root/root 773 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1207 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-gdb -rwxr-xr-x root/root 1773 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-hist2d-loci-samples-coverage -rwxr-xr-x root/root 5937 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 3037 2021-01-10 12:07 ./usr/lib/stacks/bin/stacks-samtools-tview -rwxr-xr-x root/root 585456 2021-01-10 12:07 ./usr/lib/stacks/bin/tsv2bam -rwxr-xr-x root/root 636280 2021-01-10 12:07 ./usr/lib/stacks/bin/ustacks drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/share/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-10 12:07 ./usr/share/doc/stacks/ -rw-r--r-- root/root 229 2021-01-10 12:04 ./usr/share/doc/stacks/NEWS.Debian.gz -rw-r--r-- root/root 1451 2021-01-10 12:04 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1857 2021-01-10 12:07 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 28636 2021-01-06 19:28 ./usr/share/doc/stacks/changelog.gz -rw-r--r-- root/root 1684 2021-01-10 12:07 ./usr/share/doc/stacks/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [564 B] Get:5 copy:/<>/apt_archive ./ Packages [652 B] Fetched 2179 B in 0s (82.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7575 kB of archives. After this operation, 21.6 MB of additional disk space will be used. 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[10.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-2 [53.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.07-1 [90.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-2 [88.1 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7575 kB in 0s (31.0 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21412 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.4-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-1) ... Selecting previously unselected package gpg. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 470196 Build-Time: 349 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 22 Job: stacks_2.55+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: stacks Package-Time: 385 Source-Version: 2.55+dfsg-1 Space: 470196 Status: successful Version: 2.55+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-02-03T21:56:38Z Build needed 00:06:25, 470196k disk space