sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | stacks 2.59+dfsg-1 (s390x) Fri, 20 Aug 2021 23:37:35 +0000 | +==============================================================================+ Package: stacks Version: 2.59+dfsg-1 Source Version: 2.59+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-cfaf2ce8-3109-4faa-9b33-4fec57ff3d0c' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-FFsfWC/resolver-i9FaYc' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-20-2001.51-F-2021-08-20-0809.24.pdiff [127 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-20-2001.51-F-2021-08-20-0809.24.pdiff [106 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-20-2001.51-F-2021-08-20-0809.24.pdiff [127 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-20-2001.51-F-2021-08-20-0809.24.pdiff [106 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8360 kB] Fetched 8885 kB in 4s (2232 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libreadline8 readline-common The following packages will be upgraded: bsdutils debianutils fdisk libblkid1 libfdisk1 libmount1 libsmartcols1 libuuid1 mount util-linux 10 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 2963 kB of archives. After this operation, 870 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 bsdutils amd64 1:2.37.2-1 [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 debianutils amd64 5.3-1 [93.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libblkid1 amd64 2.37.2-1 [201 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmount1 amd64 2.37.2-1 [215 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-2 [73.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libuuid1 amd64 2.37.2-1 [84.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libfdisk1 amd64 2.37.2-1 [241 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsmartcols1 amd64 2.37.2-1 [161 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 fdisk amd64 2.37.2-1 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 util-linux amd64 2.37.2-1 [1193 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 mount amd64 2.37.2-1 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2963 kB in 0s (81.7 MB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10517 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.37.2-1_amd64.deb ... Unpacking libfdisk1:amd64 (2.37.2-1) over (2.36.1-8) ... Preparing to unpack .../libsmartcols1_2.37.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.37.2-1) over (2.36.1-8) ... Setting up libsmartcols1:amd64 (2.37.2-1) ... (Reading database ... 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Processing triggers for libc-bin (2.31-16) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/stacks.git Please use: git clone https://salsa.debian.org/med-team/stacks.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 336 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main stacks 2.59+dfsg-1 (dsc) [2044 B] Get:2 http://debian.oregonstate.edu/debian unstable/main stacks 2.59+dfsg-1 (tar) [327 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main stacks 2.59+dfsg-1 (diff) [7544 B] Fetched 336 kB in 0s (806 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/stacks-FFsfWC/stacks-2.59+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-FFsfWC' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1911 B in 0s (77.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbam-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libperl5.32 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libsparsehash-dev libssh2-1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto samtools:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x glibc-doc manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn11-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x pkg-config:s390x gnupg git bzr gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl cwltool:s390x Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:s390x libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x libgpm2:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-11-base:s390x gcc-11-cross-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbam-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libperl5.32 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libsparsehash-dev libssh2-1:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto samtools:s390x sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 215 MB of archives. After this operation, 902 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-1 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-11-base s390x 11.2.0-2 [204 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.4.0-2 [200 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-1 [819 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.37-4 [2067 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-16 [2254 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.1-6cross1 [202 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.1-6cross1 [41.1 MB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-9cross4 [1231 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 11.2.0-2cross1 [24.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 11.2.0-2cross1 [94.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 11.2.0-2cross1 [24.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 11.2.0-2cross1 [7912 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 11.2.0-2cross1 [2001 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 11.2.0-2cross1 [529 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 11.2.0-2cross1 [806 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.1-6cross1 [663 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.1-6cross1 [46.3 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.1-1 [1456 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.10.13-1cross4 [1395 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-9cross4 [1943 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.1-6cross1 [1684 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.1-6cross1 [44.2 MB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.1-1 [1176 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.4+nmu1 [191 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.4+nmu1 [1039 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 11.2.0-2 [24.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-16 [2447 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.4.0-2 [2553 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 11.2.0-2 [8064 B] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.10.46-4 [1361 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.25-1 [89.4 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.25-1 [105 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.46.4-1 [75.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-6 [64.3 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-6 [112 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1k-1 [1213 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-6 [341 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-6 [153 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.3.2-2 [78.0 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.3.2-2 [185 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-16 [1887 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libbam-dev s390x 0.1.19+dfsg-2 [113 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libbrotli1 s390x 1.0.9-2+b2 [275 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-4 [45.9 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.2.1+dfsg-1 [552 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libnettle8 s390x 3.7.3-1 [277 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed6 s390x 3.7.3-1 [318 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-6 [385 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.3.2-2 [94.2 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libffi7 s390x 3.3-6 [20.1 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.22-1 [333 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.16.0-2 [52.5 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.7.1-5 [1228 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.8 [618 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2.1 [68.2 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-2.1 [103 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.57+dfsg-3 [221 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.43.0-1 [72.4 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.21.0-1.2 [57.1 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.9.0-3 [159 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.74.0-1.3+b1 [315 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libcurl4-gnutls-dev s390x 7.74.0-1.3+b1 [412 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.7-1 [46.1 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate-dev s390x 1.7-1 [42.0 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 11.2.0-2 [96.7 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 11.2.0-2 [25.2 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 11.2.0-2 [569 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 11.2.0-2 [807 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.4.0-2 [680 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.5-2 [167 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main s390x libhts3 s390x 1.11-4 [347 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.5-2 [228 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main s390x libhts-dev s390x 1.11-4 [3872 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main s390x libtinfo6 s390x 6.2+20201114-2 [336 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main s390x libncurses6 s390x 6.2+20201114-2 [95.3 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.4.0-2 [1683 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main s390x samtools s390x 1.11-1 [525 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 215 MB in 2s (127 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10519 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-1_amd64.deb ... Unpacking bsdextrautils (2.37.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-5) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-5_amd64.deb ... Unpacking perl (5.32.1-5) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:s390x. Preparing to unpack .../009-gcc-11-base_11.2.0-2_s390x.deb ... Unpacking gcc-11-base:s390x (11.2.0-2) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../010-gcc-9-base_9.4.0-2_s390x.deb ... Unpacking gcc-9-base:s390x (9.4.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.4-1_all.deb ... Unpacking automake (1:1.16.4-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../023-binutils-s390x-linux-gnu_2.37-4_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.37-4) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.25-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../025-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../026-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../027-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../028-libc6-dev_2.31-16_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-16) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../029-libstdc++-10-dev_10.2.1-6_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-6) ... Selecting previously unselected package g++-10. Preparing to unpack .../030-g++-10_10.2.1-6_amd64.deb ... Unpacking g++-10 (10.2.1-6) ... Selecting previously unselected package g++. Preparing to unpack .../031-g++_4%3a10.2.1-1_amd64.deb ... Unpacking g++ (4:10.2.1-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../032-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../033-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../034-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-10-s390x-linux-gnu-base:amd64. Preparing to unpack .../035-gcc-10-s390x-linux-gnu-base_10.2.1-6cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu-base:amd64 (10.2.1-6cross1) ... Selecting previously unselected package cpp-10-s390x-linux-gnu. Preparing to unpack .../036-cpp-10-s390x-linux-gnu_10.2.1-6cross1_amd64.deb ... 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Selecting previously unselected package libhts-dev:s390x. Preparing to unpack .../139-libhts-dev_1.11-4_s390x.deb ... Unpacking libhts-dev:s390x (1.11-4) ... Selecting previously unselected package libtinfo6:s390x. Preparing to unpack .../140-libtinfo6_6.2+20201114-2_s390x.deb ... Unpacking libtinfo6:s390x (6.2+20201114-2) ... Selecting previously unselected package libncurses6:s390x. Preparing to unpack .../141-libncurses6_6.2+20201114-2_s390x.deb ... Unpacking libncurses6:s390x (6.2+20201114-2) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../142-libsparsehash-dev_2.0.3-2_all.deb ... Unpacking libsparsehash-dev (2.0.3-2) ... Selecting previously unselected package libstdc++-9-dev:s390x. Preparing to unpack .../143-libstdc++-9-dev_9.4.0-2_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.4.0-2) ... Selecting previously unselected package samtools:s390x. Preparing to unpack .../144-samtools_1.11-1_s390x.deb ... Unpacking samtools:s390x (1.11-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../145-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up gcc-11-base:s390x (11.2.0-2) ... Setting up binutils-s390x-linux-gnu (2.37-4) ... Setting up bsdextrautils (2.37.2-1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-5) ... Setting up libc6-s390x-cross (2.31-9cross4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:s390x (5.10.46-4) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (5.10.13-1cross4) ... Setting up cross-config (2.6.18+nmu1) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-10-cross-base (10.2.1-6cross1) ... Setting up gcc-11-cross-base (11.2.0-2cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libc6-dev-s390x-cross (2.31-9cross4) ... Setting up libcrypt-dev:amd64 (1:4.4.25-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-16) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libgomp1-s390x-cross (11.2.0-2cross1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.2.1-6cross1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:s390x (9.4.0-2) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-s390x-cross (11.2.0-2cross1) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-5) ... Setting up libgcc-s1-s390x-cross (11.2.0-2cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.69-14) ... Setting up libitm1-s390x-cross (11.2.0-2cross1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up cpp-10-s390x-linux-gnu (10.2.1-6cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.4-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up cpp-s390x-linux-gnu (4:10.2.1-1) ... Setting up libstdc++6-s390x-cross (11.2.0-2cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.4+nmu1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (11.2.0-2cross1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libubsan1-s390x-cross (11.2.0-2cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.1-6cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.2.1-6cross1) ... Setting up debhelper (13.4+nmu1) ... Setting up gcc-10-s390x-linux-gnu (10.2.1-6cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.2.1-6cross1) ... Setting up g++-s390x-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (11.2.0-2) ... Setting up libc6:s390x (2.31-16) ... Setting up libtasn1-6:s390x (4.16.0-2) ... Setting up libbz2-1.0:s390x (1.0.8-4) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:s390x (11.2.0-2) ... Setting up libitm1:s390x (11.2.0-2) ... Setting up libtinfo6:s390x (6.2+20201114-2) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up liblzma5:s390x (5.2.5-2) ... Setting up libssl1.1:s390x (1.1.1k-1) ... Setting up libbrotli1:s390x (1.0.9-2+b2) ... Setting up libffi7:s390x (3.3-6) ... Setting up libnghttp2-14:s390x (1.43.0-1) ... Setting up libunistring2:s390x (0.9.10-6) ... Setting up libdeflate0:s390x (1.7-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libcrypt1:s390x (1:4.4.25-1) ... Setting up libidn2-0:s390x (2.3.2-2) ... Setting up libcom-err2:s390x (1.46.4-1) ... Setting up libgomp1:s390x (11.2.0-2) ... Setting up libkrb5support0:s390x (1.18.3-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2.1) ... Setting up libasan5:s390x (9.4.0-2) ... Setting up libnettle8:s390x (3.7.3-1) ... Setting up libgmp10:s390x (2:6.2.1+dfsg-1) ... Setting up libncurses6:s390x (6.2+20201114-2) ... Setting up libp11-kit0:s390x (0.23.22-1) ... Setting up libatomic1:s390x (11.2.0-2) ... Setting up libk5crypto3:s390x (1.18.3-6) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:s390x (5.2.5-2) ... Setting up libubsan1:s390x (11.2.0-2) ... Setting up libcrypt-dev:s390x (1:4.4.25-1) ... Setting up libssh2-1:s390x (1.9.0-3) ... Setting up libkrb5-3:s390x (1.18.3-6) ... Setting up libdeflate-dev:s390x (1.7-1) ... Setting up libpsl5:s390x (0.21.0-1.2) ... Setting up libhogweed6:s390x (3.7.3-1) ... Setting up libgcc-9-dev:s390x (9.4.0-2) ... Setting up libgnutls30:s390x (3.7.1-5) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.18.3-6) ... Setting up libtirpc3:s390x (1.3.2-2) ... Setting up libldap-2.4-2:s390x (2.4.57+dfsg-3) ... Setting up libcurl3-gnutls:s390x (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:s390x (7.74.0-1.3+b1) ... Setting up libtirpc-dev:s390x (1.3.2-2) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libhts3:s390x (1.11-4) ... Setting up samtools:s390x (1.11-1) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.31-16) ... Setting up libstdc++-9-dev:s390x (9.4.0-2) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libhts-dev:s390x (1.11-4) ... Setting up libbam-dev:s390x (0.1.19+dfsg-2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-16) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-4 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-16 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-s390x-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-2 libstdc++6-s390x-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.8 autoconf_2.69-14 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.51 bash_5.1-3+b1 binutils_2.37-4 binutils-common_2.37-4 binutils-s390x-linux-gnu_2.37-4 binutils-x86-64-linux-gnu_2.37-4 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-s390x-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-s390x-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu1 crossbuild-essential-s390x_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.4+nmu1 debian-archive-keyring_2021.1.1 debianutils_5.3-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fdisk_2.37.2-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-s390x-linux-gnu_10.2.1-6cross1 g++-s390x-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base_10.2.1-6cross1 gcc-10-s390x-linux-gnu_10.2.1-6cross1 gcc-10-s390x-linux-gnu-base_10.2.1-6cross1 gcc-11-base_11.2.0-2 gcc-11-cross-base_11.2.0-2cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-2 gcc-s390x-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.8 libarchive-zip-perl_1.68-1 libasan5_9.4.0-2 libasan6_11.2.0-2 libasan6-s390x-cross_11.2.0-2cross1 libatomic1_11.2.0-2 libatomic1-s390x-cross_11.2.0-2cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbam-dev_0.1.19+dfsg-2 libbinutils_2.37-4 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-16 libc-dev-bin_2.31-16 libc6_2.31-16 libc6-dev_2.31-16 libc6-dev-s390x-cross_2.31-9cross4 libc6-s390x-cross_2.31-9cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-2 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-1 libcrypt1_1:4.4.25-1 libctf-nobfd0_2.37-4 libctf0_2.37-4 libcurl3-gnutls_7.74.0-1.3+b1 libcurl4-gnutls-dev_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.4+nmu1 libdebian-dpkgcross-perl_2.6.18+nmu1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.9 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libfdisk1_2.37.2-1 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-s390x-cross_10.2.1-6cross1 libgcc-9-dev_9.4.0-2 libgcc-s1_11.2.0-2 libgcc-s1-s390x-cross_11.2.0-2cross1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_11.2.0-2 libgomp1-s390x-cross_11.2.0-2cross1 libgpg-error0_1.42-2 libgssapi-krb5-2_1.18.3-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_11.2.0-2 libitm1-s390x-cross_11.2.0-2cross1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-2 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsparsehash-dev_2.0.3-2 libss2_1.46.4-1 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-s390x-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-2 libstdc++6-s390x-cross_11.2.0-2cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-2 libubsan1_11.2.0-2 libubsan1-s390x-cross_11.2.0-2cross1 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 linux-libc-dev-s390x-cross_5.10.13-1cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-5 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: stacks Binary: stacks Architecture: any Version: 2.59+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://creskolab.uoregon.edu/stacks/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Package-List: stacks deb science optional arch=any Checksums-Sha1: 6216fcc87e1fde6d9d4bc9ab6f6028efeffcbf31 326828 stacks_2.59+dfsg.orig.tar.xz 7595d85f939417723b45072600a23220a313f8e6 7544 stacks_2.59+dfsg-1.debian.tar.xz Checksums-Sha256: e61686dbd80e54d3851782c23f1288e338f6db5f20aed383f4402d917d04197b 326828 stacks_2.59+dfsg.orig.tar.xz 8a1aa2345d7f8d870bc38948173942bc6c32a21a6e59948480bc81c455c5f56d 7544 stacks_2.59+dfsg-1.debian.tar.xz Files: 98c85dd151fbe7faf0961a628255b47b 326828 stacks_2.59+dfsg.orig.tar.xz bbc56b131bfc34211cfdd110eb927f13 7544 stacks_2.59+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZHJMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGkvhAAmT3mCsn1APBLtZgEZi/PpRK7mOD8 LUR6GbajeJKAuQIqdCM7Rt6bmKG/kzAWQFsd0y/g2/skN8ytSvgTWrfAtp1xVcbs ATGXPoRfAjV33bWilr5WYCMEh9mOK2YHIM5s0V64+ysR863wIBL6hzlZO+JzXAmH 0E9sZa9qR9ExbuOTkgd/ZRDjbfSF1L/CmxEbF82fvx1xvB52AQ7aqcb8ypdfGcys uaw97yj1xIhTi10GTzFzTggCOiPrJI0Aiu467UTA/yoCwfMBXMogK3yQlWmrXYWc 3vsLAxkFVU1UzRsmql13VA2UTfnQH8vR9OaFSl6yjxAxqk+YoCMe6jtWHEchu64U BJzofRmc2ykci9K+0dcz+ZANq5GUqZB34XlmzBCGnsucvP5JpefDuMRhO5yvDnHb rDgb89kSlWS1l+FJuoTdPuNEFbJGw/Hbm9DYgPsZD7o/FxwVmJJqa35SwWaHlTsO Mf4JEZwM5WneK6jsXjnB/qKwY//PFhbiztCGjjtoEUP2DEuhJQN5kVt0h78px+Mt NlKJS9QBNK9Y1erK8M0RqlAbTKrUIljss9ublCTB/GhmDlfn4Q72+5h+0EdqNXSL Ql6duweVjhs7RJMRkEyFNFK2Gx/d0+i+ler422MQxZEFihACv+Z16Lp3yG+5yyrS qoMKmsqgdYJ84wg= =pm6H -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.e6J6tuCa/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 15 13:54:27 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./stacks_2.59+dfsg-1.dsc dpkg-source: info: extracting stacks in /<> dpkg-source: info: unpacking stacks_2.59+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.59+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying RisR.patch dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-cfaf2ce8-3109-4faa-9b33-4fec57ff3d0c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.59+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:33: installing 'config/ar-lib' configure.ac:28: installing 'config/compile' configure.ac:7: installing 'config/install-sh' configure.ac:7: installing 'config/missing' Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking whether s390x-linux-gnu-g++ supports C++11 features by default... yes checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking the archiver (s390x-linux-gnu-ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for s390x-linux-gnu-gcc option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater. no checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc rm -f libcore.a s390x-linux-gnu-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libcore.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc rm -f libclean.a s390x-linux-gnu-ar cru libclean.a src/clean.o src/file_io.o src/write.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libclean.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mapping_utils.o src/mapping_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc rm -f libpop.a s390x-linux-gnu-ar cru libpop.a src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libpop.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.59\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/debian/stacks/usr/bin' /bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/integrate_alignments.py scripts/count_fixed_catalog_snps.py scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<>/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>' sed -e 's,_VERSION_,2.59,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/denovo_map.pl > /<>/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/debian/stacks/usr/bin/denovo_map.pl.subst /<>/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.59,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/ref_map.pl > /<>/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/debian/stacks/usr/bin/ref_map.pl.subst /<>/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.59,' /<>/debian/stacks/usr/bin/stacks-integrate-alignments sed -i.bkp -e 's,_VERSION_,2.59,' /<>/debian/stacks/usr/bin/stacks-samtools-tview rm -f /<>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp rm -f /<>/debian/stacks/usr/bin/stacks-samtools-tview.bkp chmod +x /<>/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/stacks/usr/lib/stacks mv debian/stacks/usr/bin debian/stacks/usr/lib/stacks cd debian/stacks/usr/lib/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link mkdir -p debian/stacks/usr/lib/debian-med/bin cd debian/stacks/usr/lib/debian-med/bin && \ for f in `ls /<>/debian/stacks/usr/lib/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'stacks' in '../stacks_2.59+dfsg-1_s390x.deb'. dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.59+dfsg-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../stacks_2.59+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-08-20T23:43:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.59+dfsg-1_s390x.changes: --------------------------------- Format: 1.8 Date: Sun, 15 Aug 2021 19:19:04 +0530 Source: stacks Binary: stacks stacks-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.59+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.59+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 2.59+dfsg Checksums-Sha1: 3a239c2be8db0c6fbd8c494b292a8ccf3cf2e869 27879216 stacks-dbgsym_2.59+dfsg-1_s390x.deb e335cc8090e05517b5f202b5e068966c8ea80586 5651 stacks_2.59+dfsg-1_s390x.buildinfo 83f4e8942711e3f426e5bc801d745c78920dc1f0 944160 stacks_2.59+dfsg-1_s390x.deb Checksums-Sha256: c7f2a1e4e3ffa51d763bd915bb70df6c62699bdd2add9b000b26578a12becbe5 27879216 stacks-dbgsym_2.59+dfsg-1_s390x.deb ae3a6e31d75381304a869edfacceb9008a2f2243f16c80f1e43b3a8ddbd5d21a 5651 stacks_2.59+dfsg-1_s390x.buildinfo f465c760c39d63ebda38df0b48ba7ab9a4257455e1a2e4fb6ab1ee2fd1e0286d 944160 stacks_2.59+dfsg-1_s390x.deb Files: 6929abcf6dd005bece38adc08a52ddb8 27879216 debug optional stacks-dbgsym_2.59+dfsg-1_s390x.deb 46e2bc2926c59d44e0943dae0a96afde 5651 science optional stacks_2.59+dfsg-1_s390x.buildinfo f1d80b2ca21483db80887e36c37dadf4 944160 science optional stacks_2.59+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks stacks-dbgsym Architecture: s390x Version: 2.59+dfsg-1 Checksums-Md5: 6929abcf6dd005bece38adc08a52ddb8 27879216 stacks-dbgsym_2.59+dfsg-1_s390x.deb f1d80b2ca21483db80887e36c37dadf4 944160 stacks_2.59+dfsg-1_s390x.deb Checksums-Sha1: 3a239c2be8db0c6fbd8c494b292a8ccf3cf2e869 27879216 stacks-dbgsym_2.59+dfsg-1_s390x.deb 83f4e8942711e3f426e5bc801d745c78920dc1f0 944160 stacks_2.59+dfsg-1_s390x.deb Checksums-Sha256: c7f2a1e4e3ffa51d763bd915bb70df6c62699bdd2add9b000b26578a12becbe5 27879216 stacks-dbgsym_2.59+dfsg-1_s390x.deb f465c760c39d63ebda38df0b48ba7ab9a4257455e1a2e4fb6ab1ee2fd1e0286d 944160 stacks_2.59+dfsg-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 20 Aug 2021 23:43:29 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.51), bash (= 5.1-3+b1), binutils (= 2.37-4), binutils-common (= 2.37-4), binutils-x86-64-linux-gnu (= 2.37-4), bsdextrautils (= 2.37.2-1), bsdutils (= 1:2.37.2-1), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.4+nmu1), debianutils (= 5.3-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gcc-11-base (= 11.2.0-2), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-2), libatomic1 (= 11.2.0-2), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbam-dev (= 0.1.19+dfsg-2), libbinutils (= 2.37-4), libblkid1 (= 2.37.2-1), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-16), libc-dev-bin (= 2.31-16), libc6 (= 2.31-16), libc6-dev (= 2.31-16), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-2), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-1), libcrypt1 (= 1:4.4.25-1), libctf-nobfd0 (= 2.37-4), libctf0 (= 2.37-4), libcurl3-gnutls (= 7.74.0-1.3+b1), libcurl4-gnutls-dev (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.4+nmu1), libdeflate-dev (= 1.7-1), libdeflate0 (= 1.7-1), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 11.2.0-2), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.1-5), libgomp1 (= 11.2.0-2), libgpg-error0 (= 1.42-2), libgssapi-krb5-2 (= 1.18.3-6), libhogweed6 (= 3.7.3-1), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-2), libk5crypto3 (= 1.18.3-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-6), libkrb5support0 (= 1.18.3-6), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 11.2.0-2), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-9), libpam-modules-bin (= 1.4.0-9), libpam-runtime (= 1.4.0-9), libpam0g (= 1.4.0-9), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.2.0-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-1), libsparsehash-dev (= 2.0.3-2), libssh2-1 (= 1.9.0-3), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 11.2.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-2), libubsan1 (= 11.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-1), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), samtools (= 1.11-1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629035344" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ stacks-dbgsym_2.59+dfsg-1_s390x.deb ----------------------------------- new Debian package, version 2.0. size 27879216 bytes: control archive=1088 bytes. 786 bytes, 12 lines control 1248 bytes, 12 lines md5sums Package: stacks-dbgsym Source: stacks Version: 2.59+dfsg-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 28571 Depends: stacks (= 2.59+dfsg-1) Section: debug Priority: optional Description: debug symbols for stacks Build-Ids: 3e22c9829a046fa8a760aabfcc279feac91225ad 51e19e8f8db90e238ac131aeba2c83bce940358f 7046422922fbdf38963d7fd00bf08354cf0ba735 76503dec62936963238128bb36a81f15bb201c92 8464d012770bdbabd07152aa9b2416c81b832f90 96eaaf907ee9e392368e668697ac08a76864183d 9f8871636a7b39d24b7ea276dd331369fc7bb03c a88f5d86b4947ccd08c7a734d9687a829691ec3f d7214bc263eaf25e3604e244802d896971d06cb1 da8875b85925b1463f18b58777ee7fd4ce6f9013 f95d9285ea4fdf83f02fb9730606f7c39ccdfde1 drwxr-xr-x root/root 0 2021-08-15 13:49 ./ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/3e/ -rw-r--r-- root/root 2070120 2021-08-15 13:49 ./usr/lib/debug/.build-id/3e/22c9829a046fa8a760aabfcc279feac91225ad.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/51/ -rw-r--r-- root/root 4614432 2021-08-15 13:49 ./usr/lib/debug/.build-id/51/e19e8f8db90e238ac131aeba2c83bce940358f.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 2042728 2021-08-15 13:49 ./usr/lib/debug/.build-id/70/46422922fbdf38963d7fd00bf08354cf0ba735.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/76/ -rw-r--r-- root/root 2896856 2021-08-15 13:49 ./usr/lib/debug/.build-id/76/503dec62936963238128bb36a81f15bb201c92.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/84/ -rw-r--r-- root/root 1036064 2021-08-15 13:49 ./usr/lib/debug/.build-id/84/64d012770bdbabd07152aa9b2416c81b832f90.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/96/ -rw-r--r-- root/root 1821096 2021-08-15 13:49 ./usr/lib/debug/.build-id/96/eaaf907ee9e392368e668697ac08a76864183d.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/9f/ -rw-r--r-- root/root 5324232 2021-08-15 13:49 ./usr/lib/debug/.build-id/9f/8871636a7b39d24b7ea276dd331369fc7bb03c.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 1412728 2021-08-15 13:49 ./usr/lib/debug/.build-id/a8/8f5d86b4947ccd08c7a734d9687a829691ec3f.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/d7/ -rw-r--r-- root/root 2128336 2021-08-15 13:49 ./usr/lib/debug/.build-id/d7/214bc263eaf25e3604e244802d896971d06cb1.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/da/ -rw-r--r-- root/root 2154144 2021-08-15 13:49 ./usr/lib/debug/.build-id/da/8875b85925b1463f18b58777ee7fd4ce6f9013.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 2441744 2021-08-15 13:49 ./usr/lib/debug/.build-id/f9/5d9285ea4fdf83f02fb9730606f7c39ccdfde1.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 1286680 2021-08-15 13:49 ./usr/lib/debug/.dwz/s390x-linux-gnu/stacks.debug drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/share/doc/stacks-dbgsym -> stacks stacks_2.59+dfsg-1_s390x.deb ---------------------------- new Debian package, version 2.0. size 944160 bytes: control archive=1660 bytes. 1002 bytes, 21 lines control 1868 bytes, 27 lines md5sums Package: stacks Version: 2.59+dfsg-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5658 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl, python3, littler Conflicts: stacks-web Replaces: stacks-web Provides: stacks-web Section: science Priority: optional Homepage: https://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks drwxr-xr-x root/root 0 2021-08-15 13:49 ./ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/bin/ -rwxr-xr-x root/root 771 2021-08-15 13:48 ./usr/bin/stacks drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/count_fixed_catalog_snps.py -> ../../stacks/bin/count_fixed_catalog_snps.py lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/integrate_alignments.py -> ../../stacks/bin/integrate_alignments.py lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/stacks/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/lib/stacks/bin/ -rwxr-xr-x root/root 369152 2021-08-15 13:49 ./usr/lib/stacks/bin/clone_filter -rwxr-xr-x root/root 8652 2021-08-15 13:49 ./usr/lib/stacks/bin/count_fixed_catalog_snps.py -rwxr-xr-x root/root 471184 2021-08-15 13:49 ./usr/lib/stacks/bin/cstacks lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 30259 2021-08-15 13:49 ./usr/lib/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 798200 2021-08-15 13:49 ./usr/lib/stacks/bin/gstacks -rwxr-xr-x root/root 10879 2021-08-15 13:49 ./usr/lib/stacks/bin/integrate_alignments.py -rwxr-xr-x root/root 278952 2021-08-15 13:49 ./usr/lib/stacks/bin/kmer_filter -rwxr-xr-x root/root 385200 2021-08-15 13:49 ./usr/lib/stacks/bin/phasedstacks -rwxr-xr-x root/root 1068160 2021-08-15 13:49 ./usr/lib/stacks/bin/populations -rwxr-xr-x root/root 441424 2021-08-15 13:49 ./usr/lib/stacks/bin/process_radtags -rwxr-xr-x root/root 374096 2021-08-15 13:49 ./usr/lib/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2021-08-15 13:49 ./usr/lib/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 15168 2021-08-15 13:49 ./usr/lib/stacks/bin/ref_map.pl -rwxr-xr-x root/root 462792 2021-08-15 13:49 ./usr/lib/stacks/bin/sstacks -rwxr-xr-x root/root 1040 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-count-reads-per-sample-per-locus -rwxr-xr-x root/root 773 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1207 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-gdb -rwxr-xr-x root/root 1773 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-hist2d-loci-samples-coverage -rwxr-xr-x root/root 22215 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 3037 2021-08-15 13:49 ./usr/lib/stacks/bin/stacks-samtools-tview -rwxr-xr-x root/root 470344 2021-08-15 13:49 ./usr/lib/stacks/bin/tsv2bam -rwxr-xr-x root/root 492464 2021-08-15 13:49 ./usr/lib/stacks/bin/ustacks drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-15 13:49 ./usr/share/doc/stacks/ -rw-r--r-- root/root 229 2021-08-15 13:48 ./usr/share/doc/stacks/NEWS.Debian.gz -rw-r--r-- root/root 1451 2021-08-15 13:48 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1883 2021-08-15 13:49 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 29350 2021-07-13 18:53 ./usr/share/doc/stacks/changelog.gz -rw-r--r-- root/root 1684 2021-08-15 13:48 ./usr/share/doc/stacks/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [563 B] Get:5 copy:/<>/apt_archive ./ Packages [648 B] Fetched 2174 B in 0s (88.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 7383 kB of archives. After this operation, 21.1 MB of additional disk space will be used. 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0.03+ds1-1.1 [18.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-1 [60.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7383 kB in 0s (26.8 MB/s) Selecting previously unselected package diffstat. (Reading database ... 21448 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../27-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../28-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../29-liblist-moreutils-xs-perl_0.430-2_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../30-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../31-libparams-util-perl_1.102-1+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... 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Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.01-2) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.25-1+b1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.5-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 458620 Build-Time: 306 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 35 Job: stacks_2.59+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: stacks Package-Time: 355 Source-Version: 2.59+dfsg-1 Space: 458620 Status: successful Version: 2.59+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-08-20T23:43:30Z Build needed 00:05:55, 458620k disk space