sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley

+==============================================================================+
| stacks 2.62+dfsg-1 (armhf)                   Wed, 07 Dec 2022 00:49:52 +0000 |
+==============================================================================+

Package: stacks
Version: 2.62+dfsg-1
Source Version: 2.62+dfsg-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-faf5e9eb-302e-4502-a508-8065a7479b81' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/stacks-Ip6rre/resolver-rcJJ3Y' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://localhost:3142/debian sid InRelease
Get:2 http://localhost:3142/debian sid/main armhf Packages [9050 kB]
Fetched 9050 kB in 1s (7454 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/stacks.git
Please use:
git clone https://salsa.debian.org/med-team/stacks.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 341 kB of source archives.
Get:1 http://localhost:3142/debian sid/main stacks 2.62+dfsg-1 (dsc) [2040 B]
Get:2 http://localhost:3142/debian sid/main stacks 2.62+dfsg-1 (tar) [333 kB]
Get:3 http://localhost:3142/debian sid/main stacks 2.62+dfsg-1 (diff) [6416 B]
Fetched 341 kB in 0s (6325 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/stacks-Ip6rre/stacks-2.62+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/stacks-Ip6rre' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [430 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [521 B]
Fetched 1908 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf
  cross-config crossbuild-essential-armhf debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabihf
  g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf
  gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base
  gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf
  libatomic1-armhf-cross libbam-dev:armhf libbrotli1:armhf libbz2-1.0:armhf
  libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross
  libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf
  libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libelf1
  libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross
  libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf
  libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf
  libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu72 libidn2-0:armhf
  libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf
  libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl
  liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses6:armhf
  libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf
  libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf
  libsasl2-modules-db:armhf libsparsehash-dev libssh2-1:armhf libssl3:armhf
  libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf
  libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf
  libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf
  libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf
  linux-libc-dev-armhf-cross m4 man-db po-debconf samtools:armhf
  sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
  cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex
  bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf
  libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libcurl4-doc:armhf
  libgnutls28-dev:armhf libidn11-dev:armhf libkrb5-dev:armhf
  libldap2-dev:armhf librtmp-dev:armhf libssh2-1-dev:armhf pkg-config:armhf
  gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf
  libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk
  libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl
  cwltool:armhf
Recommended packages:
  curl | wget | lynx ca-certificates:armhf libarchive-cpio-perl
  krb5-locales:armhf libldap-common:armhf libgpm2:armhf publicsuffix:armhf
  libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf
  cross-config crossbuild-essential-armhf debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabihf
  g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf
  gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base
  gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf
  libatomic1-armhf-cross libbam-dev:armhf libbrotli1:armhf libbz2-1.0:armhf
  libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross
  libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf
  libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libelf1
  libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross
  libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf
  libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf
  libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu72 libidn2-0:armhf
  libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf
  libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl
  liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses6:armhf
  libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf
  libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf
  libsasl2-modules-db:armhf libsparsehash-dev libssh2-1:armhf libssl3:armhf
  libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf
  libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf
  libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf
  libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf
  linux-libc-dev-armhf-cross m4 man-db po-debconf samtools:armhf
  sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf
  zlib1g-dev:armhf
0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded.
Need to get 93.2 MB of archives.
After this operation, 353 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB]
Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB]
Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB]
Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB]
Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB]
Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.1-1 [1384 kB]
Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB]
Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB]
Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB]
Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB]
Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.39-8 [3230 kB]
Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf-base amd64 12.2.0-9cross2 [37.3 kB]
Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabihf amd64 12.2.0-9cross2 [8666 kB]
Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:12.2.0-1 [17.2 kB]
Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB]
Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-9cross2 [32.8 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.36-3cross1 [872 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 12.2.0-9cross2 [36.7 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 12.2.0-9cross2 [94.8 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 12.2.0-9cross2 [6772 B]
Get:29 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 12.2.0-9cross2 [2113 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 12.2.0-9cross2 [476 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 12.2.0-9cross2 [855 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armhf-cross all 12.2.0-9cross2 [742 kB]
Get:33 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf amd64 12.2.0-9cross2 [17.0 MB]
Get:34 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:12.2.0-1 [1464 B]
Get:35 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.0.6-2cross1 [1763 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.36-3cross1 [1260 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armhf-cross all 12.2.0-9cross2 [2036 kB]
Get:38 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabihf amd64 12.2.0-9cross2 [9595 kB]
Get:39 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:12.2.0-1 [1180 B]
Get:40 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB]
Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB]
Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.9 [6708 B]
Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.1 [80.8 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB]
Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:63 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-1 [172 kB]
Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB]
Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB]
Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.1 [941 kB]
Get:69 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.3.0-8 [209 kB]
Get:70 http://localhost:3142/debian sid/main armhf gcc-12-base armhf 12.2.0-9 [37.0 kB]
Get:71 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 12.2.0-9 [36.6 kB]
Get:72 http://localhost:3142/debian sid/main armhf libc6 armhf 2.36-6 [2184 kB]
Get:73 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.3.0-8 [1971 kB]
Get:74 http://localhost:3142/debian sid/main armhf libatomic1 armhf 12.2.0-9 [7044 B]
Get:75 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.2.13.dfsg-1 [73.8 kB]
Get:76 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 6.0.10-2 [1650 kB]
Get:77 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.33-1 [95.6 kB]
Get:78 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.33-1 [125 kB]
Get:79 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.46.6~rc1-1+b1 [14.1 kB]
Get:80 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20.1-1 [29.2 kB]
Get:81 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20.1-1 [74.4 kB]
Get:82 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-1 [14.7 kB]
Get:83 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.7-1 [1656 kB]
Get:84 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20.1-1 [287 kB]
Get:85 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20.1-1 [111 kB]
Get:86 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB]
Get:87 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB]
Get:88 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB]
Get:89 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB]
Get:90 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.36-6 [1264 kB]
Get:91 http://localhost:3142/debian sid/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB]
Get:92 http://localhost:3142/debian sid/main armhf libbam-dev armhf 0.1.19+dfsg-5 [106 kB]
Get:93 http://localhost:3142/debian sid/main armhf libbrotli1 armhf 1.0.9-2+b5 [261 kB]
Get:94 http://localhost:3142/debian sid/main armhf libbz2-1.0 armhf 1.0.8-5+b1 [44.1 kB]
Get:95 http://localhost:3142/debian sid/main armhf libgmp10 armhf 2:6.2.1+dfsg1-1.1 [514 kB]
Get:96 http://localhost:3142/debian sid/main armhf libnettle8 armhf 3.8.1-2 [296 kB]
Get:97 http://localhost:3142/debian sid/main armhf libhogweed6 armhf 3.8.1-2 [315 kB]
Get:98 http://localhost:3142/debian sid/main armhf libunistring2 armhf 1.0-2 [409 kB]
Get:99 http://localhost:3142/debian sid/main armhf libidn2-0 armhf 2.3.3-1+b1 [120 kB]
Get:100 http://localhost:3142/debian sid/main armhf libffi8 armhf 3.4.4-1 [19.5 kB]
Get:101 http://localhost:3142/debian sid/main armhf libp11-kit0 armhf 0.24.1-1 [326 kB]
Get:102 http://localhost:3142/debian sid/main armhf libtasn1-6 armhf 4.19.0-2 [51.2 kB]
Get:103 http://localhost:3142/debian sid/main armhf libgnutls30 armhf 3.7.8-4 [1304 kB]
Get:104 http://localhost:3142/debian sid/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.10 [595 kB]
Get:105 http://localhost:3142/debian sid/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB]
Get:106 http://localhost:3142/debian sid/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB]
Get:107 http://localhost:3142/debian sid/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-2+b1 [158 kB]
Get:108 http://localhost:3142/debian sid/main armhf libnghttp2-14 armhf 1.50.0-1+b1 [62.5 kB]
Get:109 http://localhost:3142/debian sid/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB]
Get:110 http://localhost:3142/debian sid/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get:111 http://localhost:3142/debian sid/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB]
Get:112 http://localhost:3142/debian sid/main armhf libzstd1 armhf 1.5.2+dfsg-1 [237 kB]
Get:113 http://localhost:3142/debian sid/main armhf libcurl3-gnutls armhf 7.86.0-2 [321 kB]
Get:114 http://localhost:3142/debian sid/main armhf libcurl4-gnutls-dev armhf 7.86.0-2 [423 kB]
Get:115 http://localhost:3142/debian sid/main armhf libdeflate0 armhf 1.14-1 [52.2 kB]
Get:116 http://localhost:3142/debian sid/main armhf libdeflate-dev armhf 1.14-1 [48.7 kB]
Get:117 http://localhost:3142/debian sid/main armhf libgomp1 armhf 12.2.0-9 [97.0 kB]
Get:118 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 12.2.0-9 [519 kB]
Get:119 http://localhost:3142/debian sid/main armhf libubsan1 armhf 12.2.0-9 [856 kB]
Get:120 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.3.0-8 [708 kB]
Get:121 http://localhost:3142/debian sid/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB]
Get:122 http://localhost:3142/debian sid/main armhf liblzma5 armhf 5.2.9-0.0 [179 kB]
Get:123 http://localhost:3142/debian sid/main armhf libhts3 armhf 1.16+ds-3 [375 kB]
Get:124 http://localhost:3142/debian sid/main armhf liblzma-dev armhf 5.2.9-0.0 [236 kB]
Get:125 http://localhost:3142/debian sid/main armhf libhts-dev armhf 1.16+ds-3 [1517 kB]
Get:126 http://localhost:3142/debian sid/main armhf libtinfo6 armhf 6.3+20220423-2 [337 kB]
Get:127 http://localhost:3142/debian sid/main armhf libncurses6 armhf 6.3+20220423-2 [80.5 kB]
Get:128 http://localhost:3142/debian sid/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB]
Get:129 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.3.0-8 [1982 kB]
Get:130 http://localhost:3142/debian sid/main armhf samtools armhf 1.16.1-1 [575 kB]
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Setting up libconfig-inifiles-perl (3.000003-1) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up gcc-11-base:armhf (11.3.0-8) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libc6-armhf-cross (2.36-3cross1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up gcc-12-cross-base (12.2.0-9cross2) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libgcc-s1-armhf-cross (12.2.0-9cross2) ...
Setting up libdebhelper-perl (13.11.1) ...
Setting up libmagic1:amd64 (1:5.41-4) ...
Setting up linux-libc-dev:armhf (6.0.10-2) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up libatomic1-armhf-cross (12.2.0-9cross2) ...
Setting up libyaml-perl (1.30-2) ...
Setting up libsparsehash-dev (2.0.3-2) ...
Setting up gcc-12-base:armhf (12.2.0-9) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-3.1) ...
Setting up autotools-dev (20220109.1) ...
Setting up cross-config (2.6.20) ...
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Setting up gcc-12-arm-linux-gnueabihf-base:amd64 (12.2.0-9cross2) ...
Setting up linux-libc-dev-armhf-cross (6.0.6-2cross1) ...
Setting up autopoint (0.21-10) ...
Setting up libubsan1-armhf-cross (12.2.0-9cross2) ...
Setting up autoconf (2.71-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up binutils-arm-linux-gnueabihf (2.39-8) ...
Setting up libelf1:amd64 (0.188-1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ...
Setting up liblocale-gettext-perl (1.07-4+b3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libgomp1-armhf-cross (12.2.0-9cross2) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
Setting up libasan8-armhf-cross (12.2.0-9cross2) ...
Setting up gettext (0.21-10) ...
Setting up libtool (2.4.7-5) ...
Setting up libc6-dev-armhf-cross (2.36-3cross1) ...
Setting up cpp-12-arm-linux-gnueabihf (12.2.0-9cross2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ucf (3.0043) ...
Setting up dh-strip-nondeterminism (1.13.0-2) ...
Setting up dwz (0.14+20220924-2) ...
Setting up libgcc-12-dev-armhf-cross (12.2.0-9cross2) ...
Setting up groff-base (1.22.4-9) ...
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Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
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Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gcc-arm-linux-gnueabihf (4:12.2.0-1) ...
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Setting up debhelper (13.11.1) ...
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Setting up crossbuild-essential-armhf (12.9) ...
Setting up libgcc-s1:armhf (12.2.0-9) ...
Setting up libc6:armhf (2.36-6) ...
Setting up libffi8:armhf (3.4.4-1) ...
Setting up libtasn1-6:armhf (4.19.0-2) ...
Setting up libbz2-1.0:armhf (1.0.8-5+b1) ...
Setting up libdb5.3:armhf (5.3.28+dfsg1-0.10) ...
Setting up libstdc++6:armhf (12.2.0-9) ...
Setting up libtinfo6:armhf (6.3+20220423-2) ...
Setting up libhtscodecs2:armhf (1.3.0-4) ...
Setting up libzstd1:armhf (1.5.2+dfsg-1) ...
Setting up libkeyutils1:armhf (1.6.3-1) ...
Setting up liblzma5:armhf (5.2.9-0.0) ...
Setting up libbrotli1:armhf (1.0.9-2+b5) ...
Setting up libssl3:armhf (3.0.7-1) ...
Setting up libnghttp2-14:armhf (1.50.0-1+b1) ...
Setting up libunistring2:armhf (1.0-2) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up zlib1g:armhf (1:1.2.13.dfsg-1) ...
Setting up libcrypt1:armhf (1:4.4.33-1) ...
Setting up libidn2-0:armhf (2.3.3-1+b1) ...
Setting up libcom-err2:armhf (1.46.6~rc1-1+b1) ...
Setting up libgomp1:armhf (12.2.0-9) ...
Setting up libasan6:armhf (11.3.0-8) ...
Setting up libkrb5support0:armhf (1.20.1-1) ...
Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ...
Setting up libnettle8:armhf (3.8.1-2) ...
Setting up libgmp10:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up libp11-kit0:armhf (0.24.1-1) ...
Setting up libatomic1:armhf (12.2.0-9) ...
Setting up libk5crypto3:armhf (1.20.1-1) ...
Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ...
Setting up liblzma-dev:armhf (5.2.9-0.0) ...
Setting up libubsan1:armhf (12.2.0-9) ...
Setting up libgcc-11-dev:armhf (11.3.0-8) ...
Setting up libcrypt-dev:armhf (1:4.4.33-1) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libkrb5-3:armhf (1.20.1-1) ...
Setting up libdeflate-dev:armhf (1.14-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up libhogweed6:armhf (3.8.1-2) ...
Setting up libgnutls30:armhf (3.7.8-4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libgssapi-krb5-2:armhf (1.20.1-1) ...
Setting up libtirpc3:armhf (1.3.3+ds-1) ...
Setting up libldap-2.5-0:armhf (2.5.13+dfsg-2+b1) ...
Setting up libtirpc-dev:armhf (1.3.3+ds-1) ...
Setting up libnsl2:armhf (1.3.0-2) ...
Setting up libcurl3-gnutls:armhf (7.86.0-2) ...
Setting up libcurl4-gnutls-dev:armhf (7.86.0-2) ...
Setting up libnsl-dev:armhf (1.3.0-2) ...
Setting up libc6-dev:armhf (2.36-6) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up samtools:armhf (1.16.1-1) ...
Setting up libstdc++-11-dev:armhf (11.3.0-8) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up libhts-dev:armhf (1.16+ds-3) ...
Setting up libbam-dev:armhf (0.1.19+dfsg-5) ...
Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64)
Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.12 g++-11_11.3.0-8 g++-12_12.2.0-9 gcc-11_11.3.0-8 gcc-12_12.2.0-9 libc6-dev_2.36-6 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armhf-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armhf-cross_12.2.0-9cross2 linux-libc-dev_6.0.10-2
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-2+b1 binutils_2.39-8 binutils-arm-linux-gnueabihf_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-9 cpp-12-arm-linux-gnueabihf_12.2.0-9cross2 cpp-arm-linux-gnueabihf_4:12.2.0-1 cross-config_2.6.20 crossbuild-essential-armhf_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.12 dpkg-cross_2.6.20 dpkg-dev_1.21.12 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.30.1-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-9 g++-12-arm-linux-gnueabihf_12.2.0-9cross2 g++-arm-linux-gnueabihf_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-9 gcc-12-arm-linux-gnueabihf_12.2.0-9cross2 gcc-12-arm-linux-gnueabihf-base_12.2.0-9cross2 gcc-12-base_12.2.0-9 gcc-12-cross-base_12.2.0-9cross2 gcc-9-base_9.5.0-2+b2 gcc-arm-linux-gnueabihf_4:12.2.0-1 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-9 libasan8-armhf-cross_12.2.0-9cross2 libatomic1_12.2.0-9 libatomic1-armhf-cross_12.2.0-9cross2 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbam-dev_0.1.19+dfsg-5 libbinutils_2.39-8 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b5 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-6 libc-dev-bin_2.36-6 libc6_2.36-6 libc6-armhf-cross_2.36-3cross1 libc6-dev_2.36-6 libc6-dev-armhf-cross_2.36-3cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.44-1 libcc1-0_12.2.0-9 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39-8 libctf0_2.39-8 libcurl3-gnutls_7.86.0-2 libcurl4-gnutls-dev_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.1 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.12 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.30.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.0-2 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-9 libgcc-12-dev-armhf-cross_12.2.0-9cross2 libgcc-s1_12.2.0-9 libgcc-s1-armhf-cross_12.2.0-9cross2 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-9 libgomp1-armhf-cross_12.2.0-9cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-9 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-9 liblz4-1_1.9.4-1 liblzma-dev_5.2.9-0.0 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1+b1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-5 libpipeline1_1.5.7-1 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-9 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b3 libsemanage-common_3.4-1 libsemanage2_3.4-1+b3 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsparsehash-dev_2.0.3-2 libss2_1.46.6~rc1-1+b1 libssh2-1_1.10.0-3+b1 libssl3_3.0.7-1 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armhf-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armhf-cross_12.2.0-9cross2 libsub-override-perl_0.09-4 libsystemd0_252.2-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-8 libtsan2_12.2.0-9 libubsan1_12.2.0-9 libubsan1-armhf-cross_12.2.0-9cross2 libuchardet0_0.0.7-1 libudev1_252.2-1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.10-2 linux-libc-dev-armhf-cross_6.0.6-2cross1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-5 perl-base_5.36.0-5 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-5 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 samtools_1.16.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-7 tar_1.34+dfsg-1.1 tzdata_2022f-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: stacks
Binary: stacks
Architecture: any
Version: 2.62+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org>
Homepage: https://creskolab.uoregon.edu/stacks/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/stacks
Vcs-Git: https://salsa.debian.org/med-team/stacks.git
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev
Package-List:
 stacks deb science optional arch=any
Checksums-Sha1:
 69c008d73400af838bcfd31307685e4af74b6fc2 332804 stacks_2.62+dfsg.orig.tar.xz
 31c923b56b10fefabe58983cbe4df461addc77e8 6416 stacks_2.62+dfsg-1.debian.tar.xz
Checksums-Sha256:
 6ee2168d04e5caed55602d225626416b6ff4a11d1c80f08f87980cab7ce90eea 332804 stacks_2.62+dfsg.orig.tar.xz
 45727ffb60756ee4a735989bb5a76f291e740875cc44105c91b88e26ee912662 6416 stacks_2.62+dfsg-1.debian.tar.xz
Files:
 f12e2111471dd97702eecdc1cd6c7589 332804 stacks_2.62+dfsg.orig.tar.xz
 eba9a654cf9aa7a28f01a89cd13bc470 6416 stacks_2.62+dfsg-1.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-gpg-verify.CCwHkcYQ/trustedkeys.kbx': General error
gpgv: Signature made Tue Sep 27 10:41:21 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./stacks_2.62+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting stacks in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking stacks_2.62+dfsg.orig.tar.xz
dpkg-source: info: unpacking stacks_2.62+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying RisR.patch
dpkg-source: info: applying script-exe-paths
dpkg-source: info: applying use_debian_packaged_htslib.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-faf5e9eb-302e-4502-a508-8065a7479b81
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package stacks
dpkg-buildpackage: info: source version 2.62+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f ./constants.php
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:28: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
configure.ac:28: the top level
configure.ac:20: installing 'config/ar-lib'
configure.ac:15: installing 'config/compile'
configure.ac:42: installing 'config/config.guess'
configure.ac:42: installing 'config/config.sub'
configure.ac:7: installing 'config/install-sh'
configure.ac:7: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
parallel-tests: installing 'config/test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-sparsehash --enable-bam \
         --with-bam-include-path=/usr/include/samtools \
	 --with-bam-lib-path=/usr/lib
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib
configure: loading site script /etc/dpkg-cross/cross-config.armhf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether arm-linux-gnueabihf-g++ accepts -g... yes
checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of arm-linux-gnueabihf-g++... none
checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc
checking whether the compiler supports GNU C... yes
checking whether arm-linux-gnueabihf-gcc accepts -g... yes
checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed
checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes
checking dependency style of arm-linux-gnueabihf-gcc... none
checking whether arm-linux-gnueabihf-g++ supports C++11 features by default... yes
checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib
checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar
checking the archiver (arm-linux-gnueabihf-ar) interface... ar
checking for omp_set_num_threads in -lgomp... yes
checking for gzread in -lz... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for float.h... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for arm-linux-gnueabihf-gcc option to support OpenMP... -fopenmp
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether closedir returns void... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... arm-unknown-linux-gnueabihf
checking for GNU libc compatible malloc... (cached) yes
checking for GNU libc compatible realloc... (cached) yes
checking for floor... no
checking for memset... yes
checking for pow... no
checking for sqrt... no
checking for clock_gettime... yes
checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater.
no
checking for gawk... (cached) mawk
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make  all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algobase.h:71,
                 from /usr/arm-linux-gnueabihf/include/c++/12/bits/specfun.h:45,
                 from /usr/arm-linux-gnueabihf/include/c++/12/cmath:1935,
                 from src/constants.h:38,
                 from src/ustacks.h:24,
                 from src/ustacks.cc:25:
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >; _Iterator2 = __gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  157 |         operator()(_Iterator1 __it1, _Iterator2 __it2)
      |         ^~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Aln>::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/set:60,
                 from src/constants.h:43:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/map:61,
                 from src/constants.h:44:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2606:46:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2606:83:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2611:42:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/algorithm:61,
                 from src/constants.h:53:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1809:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1809 |           if (__comp(__i, __first))
      |               ~~~~~~^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1844 |     __final_insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Aln; _Alloc = std::allocator<Aln>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_Z15search_for_gapsRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEE._omp_fn.0’ at src/ustacks.cc:676:42:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Distance = int; _Tp = Aln; _Compare = __gnu_cxx::__ops::_Iter_comp_val<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  135 |     __push_heap(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Distance = int; _Tp = Aln; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  232 |           if (__comp(__first + __secondChild,
      |               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
  233 |                      __first + (__secondChild - 1)))
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1625 |     __heap_select(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1631:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1631 |         if (__comp(__i, __first))
      |             ~~~~~~^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1887:34,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1921:38:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:85:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   85 |       if (__comp(__a, __b))
      |           ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:87:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   87 |           if (__comp(__b, __c))
      |               ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:89:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   89 |           else if (__comp(__a, __c))
      |                    ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:94:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   94 |       else if (__comp(__a, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:96:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   96 |       else if (__comp(__b, __c))
      |                ~~~~~~^~~~~~~~~~
In function ‘_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1889:40,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1921:38:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1867:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1867 |           while (__comp(__first, __pivot))
      |                  ~~~~~~^~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1870:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1870 |           while (__comp(__pivot, __last))
      |                  ~~~~~~^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1916:27:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1900:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1900 |       std::__heap_select(__first, __middle, __last, __comp);
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘_Z28search_for_gapped_remaindersRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEERS_IiP5StackS3_SaIS4_IS5_SB_EEERS_IiP3RemS3_SaIS4_IS5_SH_EEE._omp_fn.0’ at src/ustacks.cc:968:17:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Aln; _Alloc = std::allocator<Aln>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_Z28search_for_gapped_remaindersRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEERS_IiP5StackS3_SaIS4_IS5_SB_EEERS_IiP3RemS3_SaIS4_IS5_SH_EEE._omp_fn.0’ at src/ustacks.cc:959:39:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int merge_gapped_alns(std::map<int, Stack*>&, std::map<int, Rem*>&, std::map<int, MergedStack*>&)’ at src/ustacks.cc:301:13:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int merge_gapped_alns(std::map<int, Stack*>&, std::map<int, Rem*>&, std::map<int, MergedStack*>&)’ at src/ustacks.cc:317:13:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc
src/MetaPopInfo.cc: In member function ‘void MetaPopInfo::fill_pop_indexes(std::map<int, std::pair<int, int> >&) const’:
src/MetaPopInfo.cc:427:30: warning: narrowing conversion of ‘i’ from ‘std::size_t’ {aka ‘unsigned int’} to ‘int’ [-Wnarrowing]
  427 |         pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} );
      |                              ^
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabihf/include/c++/12/algorithm:61,
                 from src/constants.h:53,
                 from src/models.h:24,
                 from src/models.cc:30:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair<double, double>*; _Distance = int; _Tp = pair<double, double>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MarukiLowModel::LikData}; _Tp = MarukiLowModel::LikData; _Alloc = std::allocator<MarukiLowModel::LikData>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<MarukiLowModel::LikData>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MarukiLowModel::LikData}; _Tp = MarukiLowModel::LikData; _Alloc = std::allocator<MarukiLowModel::LikData>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MarukiLowModel::LikData*, std::vector<MarukiLowModel::LikData> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/set:60,
                 from src/constants.h:43:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = Nt2; _Val = std::pair<const Nt2, double>; _KeyOfValue = std::_Select1st<std::pair<const Nt2, double> >; _Compare = std::less<Nt2>; _Alloc = std::allocator<std::pair<const Nt2, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<Nt2, std::pair<const Nt2, double>, std::_Select1st<std::pair<const Nt2, double> >, std::less<Nt2>, std::allocator<std::pair<const Nt2, double> > >::const_iterator’ changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40,
                 from src/Vcf.h:24,
                 from src/Vcf.cc:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘static std::string VcfRecord::util::fmt_gt_gl(const std::vector<Nt2>&, const GtLiks&)’ at src/Vcf.cc:202:24:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libcore.a
arm-linux-gnueabihf-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o  
arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabihf-ranlib libcore.a
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/MetaPopInfo.h:5,
                 from src/cstacks.cc:25:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/algorithm:61,
                 from src/constants.h:53,
                 from src/MetaPopInfo.h:8:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/regex:50,
                 from src/sstacks.cc:25:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, AlignRes>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/regex:57:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>}; _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> >::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/regex:53:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, AlignRes>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’ changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>&}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, AlignRes>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>}; _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1032:31:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1033:13:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1033:13:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/regex:54:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>&}; _Key = std::__cxx11::basic_string<char>; _Tp = AlignRes; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’,
    inlined from ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<std::__cxx11::basic_string<char>, AlignRes>&; _Key = std::__cxx11::basic_string<char>; _Tp = AlignRes; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:858:27,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1042:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, AlignRes>::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’} changed in GCC 7.1
  638 |           return _M_t._M_emplace_hint_unique(__pos,
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
  639 |                                              std::forward<_Args>(__args)...);
      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc
rm -f libclean.a
arm-linux-gnueabihf-ar cru libclean.a src/clean.o src/file_io.o src/write.o 
arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabihf-ranlib libclean.a
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabihf/include/c++/12/algorithm:61,
                 from src/constants.h:53,
                 from src/populations.h:45,
                 from src/populations.cc:29:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘_ForwardIterator std::__upper_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2011:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2011 |     __upper_bound(_ForwardIterator __first, _ForwardIterator __last,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2011:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1844 |     __final_insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/populations.h:41:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = HapStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2059:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2059 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2060 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = SumStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2059:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2059 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2060 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = SumStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2059:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2059 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2060 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = PopPair]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2059:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2059 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2060 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1940 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = LocStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:2059:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2059 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2060 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/bootstrap.o src/bootstrap.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40,
                 from src/bootstrap.h:24,
                 from src/bootstrap.cc:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 2>}; _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 2> >::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 3>}; _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 3> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 1>}; _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 1> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 4>}; _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 4> >::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 2>}; _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:246:46:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 2>*, std::vector<std::array<double, 2> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 3>}; _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:258:46:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 3>*, std::vector<std::array<double, 3> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 1>}; _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:273:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 1>*, std::vector<std::array<double, 1> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 4>}; _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:291:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 4>*, std::vector<std::array<double, 4> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc
src/export_formats.cc: In member function ‘virtual int PhylipVarAllExport::post_processing()’:
src/export_formats.cc:2373:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
 2373 |     sprintf(s, "%11lu", this->_seq_len);
      |                 ~~~~^   ~~~~~~~~~~~~~~
      |                     |         |
      |                     |         std::size_t {aka unsigned int}
      |                     long unsigned int
      |                 %11u
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mapping_utils.o src/mapping_utils.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/PopSum.h:26,
                 from src/PopSum.cc:21:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:944:38:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:945:42:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:946:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:947:44:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:948:39:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:949:43:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:950:38:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:951:42:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/map:60,
                 from src/PopSum.h:27:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/map:61:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double count_haplotypes_at_locus(int, int, const Datum* const*, std::map<std::__cxx11::basic_string<char>, double>&)’ at src/PopSum.cc:930:45:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘LocStat* LocPopSum::haplotype_diversity(int, int, const Datum* const*)’ at src/PopSum.cc:818:39:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘LocStat* LocPopSum::haplotype_diversity(int, int, const Datum* const*)’ at src/PopSum.cc:819:39:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2048:47:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2049:55:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2054:30:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2068:68:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2071:53:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2071:72:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1975:51:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1976:59:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  530 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  531 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  532 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1982:30:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1992:61:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1992:82:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1993:65:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:1993:86:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2004:51:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2004:88:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2005:35:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2005:57:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc
src/Hwp.cc: In member function ‘void HWMatrix::dump_matrix()’:
src/Hwp.cc:383:43: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
  383 |                 snprintf(buf, id_len, "%*lu  ", padding, this->_g[i][j]);
      |                                        ~~~^              ~~~~~~~~~~~~~~
      |                                           |                           |
      |                                           long unsigned int           std::size_t {aka unsigned int}
      |                                        %*u
rm -f libpop.a
arm-linux-gnueabihf-ar cru libpop.a src/bootstrap.o src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o 
arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabihf-ranlib libpop.a
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/phasedstacks.h:39,
                 from src/phasedstacks.cc:25:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int bucket_dprime(std::vector<double>&, std::vector<double>&, PhasedSummary*)’ at src/phasedstacks.cc:284:37:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int bucket_dprime(std::vector<double>&, std::vector<double>&, PhasedSummary*)’ at src/phasedstacks.cc:285:41:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc
src/gstacks.cc: In member function ‘bool LocusProcessor::align_reads_to_contig(SuffixTree*, GappedAln*, DNASeq4&, AlignRes&) const’:
src/gstacks.cc:1347:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wformat=]
 1347 |         snprintf(c, id_len, "%luM", query.length());
      |                              ~~^    ~~~~~~~~~~~~~~
      |                                |                |
      |                                |                std::__cxx11::basic_string<char>::size_type {aka unsigned int}
      |                                long unsigned int
      |                              %u
src/gstacks.cc: In member function ‘std::size_t LocusProcessor::find_locus_overlap(SuffixTree*, GappedAln*, const DNASeq4&, std::string&) const’:
src/gstacks.cc:1533:38: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
 1533 |             snprintf(buf, id_len, "%luM", alns.front().aln_len);
      |                                    ~~^    ~~~~~~~~~~~~~~~~~~~~
      |                                      |                 |
      |                                      long unsigned int std::size_t {aka unsigned int}
      |                                    %u
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algobase.h:71,
                 from /usr/arm-linux-gnueabihf/include/c++/12/bits/specfun.h:45,
                 from /usr/arm-linux-gnueabihf/include/c++/12/cmath:1935,
                 from src/constants.h:38,
                 from src/gstacks.h:23,
                 from src/gstacks.cc:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >; _Iterator2 = __gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  157 |         operator()(_Iterator1 __it1, _Iterator2 __it2)
      |         ^~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:60,
                 from /usr/arm-linux-gnueabihf/include/c++/12/algorithm:61,
                 from src/constants.h:53:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Distance = int; _Tp = STAln; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  232 |           if (__comp(__first + __secondChild,
      |               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
  233 |                      __first + (__secondChild - 1)))
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1809:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1809 |           if (__comp(__i, __first))
      |               ~~~~~~^~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const STAln&}; _Tp = STAln; _Alloc = std::allocator<STAln>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<STAln>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<STAln>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {STLink}; _Tp = STLink; _Alloc = std::allocator<STLink>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<STLink>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<double, Nt2>}; _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, Nt2> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1782 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1887:34,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1921:38:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:85:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   85 |       if (__comp(__a, __b))
      |           ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:87:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   87 |           if (__comp(__b, __c))
      |               ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:89:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   89 |           else if (__comp(__a, __c))
      |                    ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:94:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   94 |       else if (__comp(__a, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:96:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   96 |       else if (__comp(__b, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1375:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:4853:18,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1375:9:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STLink}; _Tp = STLink; _Alloc = std::allocator<STLink>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STLink; _Alloc = std::allocator<STLink>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1417:40:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STLink*, std::vector<STLink> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1469:29:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘bool LocusProcessor::align_reads_to_contig(SuffixTree*, GappedAln*, DNASeq4&, AlignRes&) const’ at src/gstacks.cc:1331:31:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘std::size_t LocusProcessor::find_locus_overlap(SuffixTree*, GappedAln*, const DNASeq4&, std::string&) const’ at src/gstacks.cc:1498:31:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, Nt2>}; _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘void LocusProcessor::write_one_locus(const CLocAlnSet&, const std::vector<SiteCounts>&, const std::vector<SiteCall>&, const std::vector<std::map<unsigned int, PhasedHet> >&)’ at src/gstacks.cc:2454:41:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, Nt2>*, std::vector<std::pair<double, Nt2> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void LocusProcessor::write_one_locus(const CLocAlnSet&, const std::vector<SiteCounts>&, const std::vector<SiteCall>&, const std::vector<std::map<unsigned int, PhasedHet> >&)’ at src/gstacks.cc:2532:36:
/usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/12/vector:70,
                 from src/constants.h:40,
                 from src/debruijn.cc:5:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]’:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Node>::iterator’ changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator<Node>]’ at /usr/arm-linux-gnueabihf/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from ‘void Graph::rebuild(const std::vector<const DNASeq4*>&, std::size_t)’ at src/debruijn.cc:137:29:
/usr/arm-linux-gnueabihf/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc
arm-linux-gnueabihf-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp 
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --no-parallel
	make -j1 install DESTDIR=/<<BUILDDIR>>/stacks-2.62\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
  /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
 /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
make  install-data-hook
make[5]: Entering directory '/<<PKGBUILDDIR>>'
sed -e 's,_VERSION_,2.62,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl > /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl.subst /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl
sed -e 's,_VERSION_,2.62,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl > /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl.subst /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl
sed -i.bkp -e 's,_VERSION_,2.62,' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments
sed -i.bkp -e 's,_VERSION_,2.62,' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-samtools-tview
rm -f /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp
rm -f /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-samtools-tview.bkp
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-dist-extract
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-gdb
make[5]: Leaving directory '/<<PKGBUILDDIR>>'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/stacks/usr/lib/stacks
mv debian/stacks/usr/bin debian/stacks/usr/lib/stacks
cd debian/stacks/usr/lib/stacks/bin && \
  for f in *.pl ; do \
    ln -s "$f" "`basename $f .pl`" ; \
    sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \
  done
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
mkdir -p debian/stacks/usr/lib/debian-med/bin
cd debian/stacks/usr/lib/debian-med/bin && \
for f in `ls /<<PKGBUILDDIR>>/debian/stacks/usr/lib/stacks/bin` ; do \
    ln -s ../../stacks/bin/$f ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/sstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/kmer_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/cstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/tsv2bam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/process_shortreads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/phasedstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/clone_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/populations contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/process_radtags contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/ustacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/gstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'stacks' in '../stacks_2.62+dfsg-1_armhf.deb'.
dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.62+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../stacks_2.62+dfsg-1_armhf.buildinfo
 dpkg-genchanges --build=any -O../stacks_2.62+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-07T00:54:18Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


stacks_2.62+dfsg-1_armhf.changes:
---------------------------------

Format: 1.8
Date: Tue, 27 Sep 2022 12:38:01 +0200
Source: stacks
Binary: stacks stacks-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 2.62+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 stacks     - pipeline for building loci from short-read DNA sequences
Changes:
 stacks (2.62+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.6.1 (routine-update)
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/<<BUILDDIR>>/stacks_2.62+dfsg-1_armhf.changes.new could not be renamed to /<<BUILDDIR>>/stacks_2.62+dfsg-1_armhf.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: stacks
Binary: stacks stacks-dbgsym
Architecture: armhf
Version: 2.62+dfsg-1
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Wed, 07 Dec 2022 00:54:17 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
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 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-10),
 autotools-dev (= 20220109.1),
 base-files (= 12.3),
 base-passwd (= 3.6.1),
 bash (= 5.2-2+b1),
 binutils (= 2.39-8),
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 binutils-x86-64-linux-gnu (= 2.39-8),
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 build-essential (= 12.9),
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 cpp (= 4:12.2.0-1),
 cpp-11 (= 11.3.0-8),
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 debconf (= 1.5.80),
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 file (= 1:5.41-4),
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 g++-12 (= 12.2.0-9),
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 gettext-base (= 0.21-10),
 grep (= 3.8-3),
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 gzip (= 1.12-1),
 hostname (= 3.23),
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 libacl1 (= 2.3.1-2),
 libarchive-zip-perl (= 1.68-1),
 libasan6 (= 11.3.0-8),
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 libc-bin (= 2.36-6),
 libc-dev-bin (= 2.36-6),
 libc6 (= 2.36-6),
 libc6-dev (= 2.36-6),
 libcap-ng0 (= 0.8.3-1+b2),
 libcap2 (= 1:2.44-1),
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 libcom-err2 (= 1.46.6~rc1-1+b1),
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 libcrypt1 (= 1:4.4.33-1),
 libctf-nobfd0 (= 2.39-8),
 libctf0 (= 2.39-8),
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 libcurl4-gnutls-dev (= 7.86.0-2),
 libdb5.3 (= 5.3.28+dfsg1-0.10),
 libdebconfclient0 (= 0.265),
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 libkrb5support0 (= 1.20.1-1),
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 libsasl2-2 (= 2.1.28+dfsg-10),
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 libseccomp2 (= 2.5.4-1+b2),
 libselinux1 (= 3.4-1+b3),
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 libsparsehash-dev (= 2.0.3-2),
 libssh2-1 (= 1.10.0-3+b1),
 libssl3 (= 3.0.7-1),
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 zlib1g-dev (= 1:1.2.13.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1664275081"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


stacks-dbgsym_2.62+dfsg-1_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 26834784 bytes: control archive=1096 bytes.
     786 bytes,    12 lines      control              
    1252 bytes,    12 lines      md5sums              
 Package: stacks-dbgsym
 Source: stacks
 Version: 2.62+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 27487
 Depends: stacks (= 2.62+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for stacks
 Build-Ids: 0d722926e1b8349a5a7f9c3822a87af79d6e4d5f 185c4e10b604d677348c184ee555356180166bde 27a48959d521604131d00a7bdaf874bc88ac1490 4332d99b280ad4c0b9f6c285b5fde5e2f46f2a5d 55d812660bbf4c9f67f1db5af78a9c56f8c5b08b 72fd4bbc43e55dd75b7956c9f1a320f7c1432889 864523de0d9cf8b36a003643370212de0b6bdd59 a18dd8b652805de804a778ca8a3e750b950c3c17 aac4fab2701ed9b03624cd4215915e0b80e9f817 c1328489b924b747e4dfd77793ade0443921a588 ed7f3d86e9dabd146fa99413a2359678c5f24567

drwxr-xr-x root/root         0 2022-09-27 10:38 ./
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/0d/
-rw-r--r-- root/root    937648 2022-09-27 10:38 ./usr/lib/debug/.build-id/0d/722926e1b8349a5a7f9c3822a87af79d6e4d5f.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/18/
-rw-r--r-- root/root   5355136 2022-09-27 10:38 ./usr/lib/debug/.build-id/18/5c4e10b604d677348c184ee555356180166bde.debug
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drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/55/
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drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/72/
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drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/86/
-rw-r--r-- root/root   2738516 2022-09-27 10:38 ./usr/lib/debug/.build-id/86/4523de0d9cf8b36a003643370212de0b6bdd59.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/a1/
-rw-r--r-- root/root   4377128 2022-09-27 10:38 ./usr/lib/debug/.build-id/a1/8dd8b652805de804a778ca8a3e750b950c3c17.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/aa/
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drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root   1660764 2022-09-27 10:38 ./usr/lib/debug/.build-id/c1/328489b924b747e4dfd77793ade0443921a588.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.build-id/ed/
-rw-r--r-- root/root   1331940 2022-09-27 10:38 ./usr/lib/debug/.build-id/ed/7f3d86e9dabd146fa99413a2359678c5f24567.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root   1367668 2022-09-27 10:38 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/stacks.debug
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/share/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/share/doc/stacks-dbgsym -> stacks


stacks_2.62+dfsg-1_armhf.deb
----------------------------

 new Debian package, version 2.0.
 size 968124 bytes: control archive=1596 bytes.
    1003 bytes,    21 lines      control              
    1710 bytes,    25 lines      md5sums              
 Package: stacks
 Version: 2.62+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3773
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 11), zlib1g (>= 1:1.2.6), samtools, libdbi-perl
 Recommends: libspreadsheet-writeexcel-perl, python3, littler
 Conflicts: stacks-web
 Replaces: stacks-web
 Provides: stacks-web
 Section: science
 Priority: optional
 Homepage: https://creskolab.uoregon.edu/stacks/
 Description: pipeline for building loci from short-read DNA sequences
  Stacks is a software pipeline for building loci from short-read sequences,
  such as those generated on the Illumina platform. Stacks was developed to work
  with restriction enzyme-based data, such as RAD-seq, for the purpose of
  building genetic maps and conducting population genomics and phylogeography.
  .
  Note that this package installs Stacks such that all commands must be run as:
  $ stacks <cmdname> <args>

drwxr-xr-x root/root         0 2022-09-27 10:38 ./
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/bin/
-rwxr-xr-x root/root       771 2022-09-27 10:38 ./usr/bin/stacks
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/gstacks -> ../../stacks/bin/gstacks
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/stacks/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/lib/stacks/bin/
-rwxr-xr-x root/root    264944 2022-09-27 10:38 ./usr/lib/stacks/bin/clone_filter
-rwxr-xr-x root/root    264772 2022-09-27 10:38 ./usr/lib/stacks/bin/cstacks
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl
-rwxr-xr-x root/root     31164 2022-09-27 10:38 ./usr/lib/stacks/bin/denovo_map.pl
-rwxr-xr-x root/root    526608 2022-09-27 10:38 ./usr/lib/stacks/bin/gstacks
-rwxr-xr-x root/root    199384 2022-09-27 10:38 ./usr/lib/stacks/bin/kmer_filter
-rwxr-xr-x root/root    264800 2022-09-27 10:38 ./usr/lib/stacks/bin/phasedstacks
-rwxr-xr-x root/root    725116 2022-09-27 10:38 ./usr/lib/stacks/bin/populations
-rwxr-xr-x root/root    331856 2022-09-27 10:38 ./usr/lib/stacks/bin/process_radtags
-rwxr-xr-x root/root    265388 2022-09-27 10:38 ./usr/lib/stacks/bin/process_shortreads
lrwxrwxrwx root/root         0 2022-09-27 10:38 ./usr/lib/stacks/bin/ref_map -> ref_map.pl
-rwxr-xr-x root/root     15360 2022-09-27 10:38 ./usr/lib/stacks/bin/ref_map.pl
-rwxr-xr-x root/root    264672 2022-09-27 10:38 ./usr/lib/stacks/bin/sstacks
-rwxr-xr-x root/root      1040 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-count-reads-per-sample-per-locus
-rwxr-xr-x root/root      1168 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-dist-extract
-rwxr-xr-x root/root      1207 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-gdb
-rwxr-xr-x root/root      1773 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-hist2d-loci-samples-coverage
-rwxr-xr-x root/root     22248 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-integrate-alignments
-rwxr-xr-x root/root      3037 2022-09-27 10:38 ./usr/lib/stacks/bin/stacks-samtools-tview
-rwxr-xr-x root/root    264376 2022-09-27 10:38 ./usr/lib/stacks/bin/tsv2bam
-rwxr-xr-x root/root    330744 2022-09-27 10:38 ./usr/lib/stacks/bin/ustacks
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/share/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-09-27 10:38 ./usr/share/doc/stacks/
-rw-r--r-- root/root       229 2022-09-27 10:38 ./usr/share/doc/stacks/NEWS.Debian.gz
-rw-r--r-- root/root      1451 2022-09-27 10:38 ./usr/share/doc/stacks/README.Debian
-rw-r--r-- root/root       881 2022-09-27 10:38 ./usr/share/doc/stacks/changelog.Debian.gz
-rw-r--r-- root/root     30656 2022-07-26 19:23 ./usr/share/doc/stacks/changelog.gz
-rw-r--r-- root/root      1684 2022-09-27 10:38 ./usr/share/doc/stacks/copyright


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [963 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [561 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [647 B]
Fetched 2171 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libreadline8
  libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl
  libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl
  libsqlite3-0 libstrictures-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl
  libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip readline-common t1utils unzip
Suggested packages:
  isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl
  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl
  binutils-multiarch libtext-template-perl readline-doc zip
Recommended packages:
  gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl
  libfreezethaw-perl libmath-base85-perl libsocket6-perl
  libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl
  libmailtools-perl
The following NEW packages will be installed:
  ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libreadline8
  libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl
  libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl
  libsqlite3-0 libstrictures-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl
  libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip readline-common
  sbuild-build-depends-lintian-dummy:armhf t1utils unzip
0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded.
Need to get 14.0 MB of archives.
After this operation, 51.5 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB]
Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.2 [68.5 kB]
Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.7-1 [1400 kB]
Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB]
Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.64-1 [36.6 kB]
Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.2 [165 kB]
Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB]
Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB]
Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB]
Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB]
Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB]
Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB]
Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB]
Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB]
Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB]
Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:29 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.17-1 [90.4 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.80-1 [101 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.54-1 [224 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:33 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB]
Get:34 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB]
Get:35 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB]
Get:38 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.928-3 [9724 B]
Get:39 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:42 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1+b1 [130 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB]
Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB]
Get:55 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB]
Get:56 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB]
Get:58 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:62 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB]
Get:63 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB]
Get:64 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:65 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:66 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB]
Get:68 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB]
Get:69 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:70 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:71 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:72 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:73 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B]
Get:74 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB]
Get:75 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.077-1 [217 kB]
Get:76 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB]
Get:77 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:78 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:79 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB]
Get:80 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:81 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:82 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB]
Get:83 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB]
Get:84 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB]
Get:85 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:86 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-3 [36.5 kB]
Get:87 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:88 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB]
Get:89 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:90 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB]
Get:91 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:92 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:93 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-2 [21.1 kB]
Get:94 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:96 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:97 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB]
Get:98 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:99 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB]
Get:100 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB]
Get:101 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:102 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.124-1 [56.1 kB]
Get:103 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB]
Get:104 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB]
Get:105 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB]
Get:106 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:107 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB]
Get:108 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-2 [105 kB]
Get:109 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:110 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.30-1 [57.3 kB]
Get:111 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1+b1 [28.8 kB]
Get:112 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB]
Get:113 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B]
Get:114 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-2 [12.4 kB]
Get:115 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB]
Get:116 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:117 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB]
Get:118 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB]
Get:119 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB]
Get:120 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB]
Get:121 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB]
Get:122 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB]
Get:123 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:124 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:125 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:126 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB]
Get:127 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB]
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Setting up libapt-pkg-perl (0.1.40+b2) ...
Setting up liblz1:amd64 (1.13-4) ...
Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ...
Setting up plzip (1.10-4) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libunicode-utf8-perl (0.62-2) ...
Setting up libmouse-perl (2.5.10-1+b3) ...
Setting up libdata-messagepack-perl (1.02-1+b1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libclass-method-modifiers-perl (2.13-2) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.46-1) ...
Setting up libyaml-0-2:amd64 (0.2.5-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.32-1+b1) ...
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libdevel-size-perl (0.83-2+b1) ...
Setting up unzip (6.0-27) ...
Setting up libsqlite3-0:amd64 (3.40.0-1) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.84+ds-1+b1) ...
Setting up libio-interactive-perl (1.023-2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up perl-openssl-defaults:amd64 (7+b1) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libtime-moment-perl (0.44-2+b1) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libassuan0:amd64 (2.5.5-5) ...
Setting up libconfig-tiny-perl (2.28-2) ...
Setting up libsereal-encoder-perl (5.001+ds-2) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.928-3) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004004-1) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libxs-parse-keyword-perl (0.30-1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.64-1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up libsub-name-perl:amd64 (0.26-2+b1) ...
Setting up libsyntax-keyword-try-perl (0.27-1+b1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ...
Setting up libpath-tiny-perl (0.124-1) ...
Setting up lzop (1.04-2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.048-3) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.4) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006006-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libclass-xsaccessor-perl (1.19-4+b1) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b1) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.0.7-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b1) ...
Setting up libperlio-gzip-perl (0.20-1+b1) ...
Setting up readline-common (8.2-1.2) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.001+ds-1+b1) ...
Setting up libmarkdown2:amd64 (2.2.7-2) ...
Setting up liburi-perl (5.17-1) ...
Setting up iso-codes (4.12.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libdata-validate-ip-perl (0.30-1) ...
Setting up libemail-address-xs-perl (1.05-1+b1) ...
Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.15-1) ...
Setting up libreadline8:amd64 (8.2-1.2) ...
Setting up libnet-http-perl (6.22-1) ...
Setting up libtext-markdown-discount-perl (0.13-2) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.008-2) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-2) ...
Setting up libdata-optlist-perl (0.112-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libhtml-parser-perl:amd64 (3.80-1) ...
Setting up gpgconf (2.2.40-1) ...
Setting up libio-socket-ssl-perl (2.077-1) ...
Setting up gpg (2.2.40-1) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libhtml-form-perl (6.10-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b1) ...
Setting up libcgi-pm-perl (4.54-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.58-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005004-3) ...
Setting up liblist-someutils-perl (0.58-3) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-perl (6.67-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.15-1) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up lintian (2.115.3) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6) ...
Processing triggers for man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 287860
Build-Time: 245
Distribution: unstable
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 11
Job: stacks_2.62+dfsg-1
Lintian: pass
Machine Architecture: amd64
Package: stacks
Package-Time: 266
Source-Version: 2.62+dfsg-1
Space: 287860
Status: successful
Version: 2.62+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-12-07T00:54:18Z
Build needed 00:04:26, 287860k disk space