sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| stacks 2.66+dfsg-1 (armel)                   Sun, 28 Jan 2024 23:22:46 +0000 |
+==============================================================================+

Package: stacks
Version: 2.66+dfsg-1
Source Version: 2.66+dfsg-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-1e3347b8-6186-441e-b7b9-242a80260149' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/stacks-v5LS0V/resolver-qONwby' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://localhost:3142/debian sid InRelease
Get:2 http://localhost:3142/debian sid/main armel Packages [9193 kB]
Fetched 9193 kB in 1s (7617 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/stacks.git
Please use:
git clone https://salsa.debian.org/med-team/stacks.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 353 kB of source archives.
Get:1 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (dsc) [2041 B]
Get:2 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (tar) [339 kB]
Get:3 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (diff) [12.1 kB]
Fetched 353 kB in 0s (6299 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/stacks-v5LS0V/stacks-2.66+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/stacks-v5LS0V' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [779 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [822 B]
Fetched 2210 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi
  gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base
  gcc-13-cross-base-ports gcc-14-base:armel gcc-arm-linux-gnueabi gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel
  libasan8-armel-cross libatomic1:armel libatomic1-armel-cross
  libbam-dev:armel libbrotli1:armel libbz2-1.0:armel libc6:armel
  libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel
  libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel
  libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel
  libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:armel libdeflate0:armel libelf1 libffi8:armel
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel
  libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel
  libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel
  libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel
  libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
  libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl
  liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses6:armel
  libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel
  libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel
  libsasl2-modules-db:armel libsparsehash-dev libssh2-1:armel libssl3:armel
  libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel
  libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel
  libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel
  libubsan1-armel-cross libuchardet0 libunistring5:armel libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:armel
  linux-libc-dev-armel-cross m4 man-db po-debconf samtools:armel
  sensible-utils ucf zlib1g:armel zlib1g-dev:armel
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales
  cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex
  bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel
  libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libcurl4-doc:armel
  libgnutls28-dev:armel libidn-dev:armel libkrb5-dev:armel libldap2-dev:armel
  librtmp-dev:armel libssh2-1-dev:armel pkg-config:armel gnutls-bin:armel
  krb5-doc:armel krb5-user:armel liblzma-doc:armel libstdc++-11-doc:armel
  libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc
  apparmor less www-browser libmail-box-perl cwltool:armel
Recommended packages:
  curl | wget | lynx ca-certificates:armel libarchive-cpio-perl
  krb5-locales:armel libldap-common:armel libgpm2:armel publicsuffix:armel
  libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi
  gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base
  gcc-13-cross-base-ports gcc-14-base:armel gcc-arm-linux-gnueabi gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel
  libasan8-armel-cross libatomic1:armel libatomic1-armel-cross
  libbam-dev:armel libbrotli1:armel libbz2-1.0:armel libc6:armel
  libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel
  libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel
  libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel
  libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:armel libdeflate0:armel libelf1 libffi8:armel
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel
  libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel
  libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel
  libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel
  libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
  libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl
  liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses6:armel
  libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel
  libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel
  libsasl2-modules-db:armel libsparsehash-dev libssh2-1:armel libssl3:armel
  libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel
  libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel
  libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel
  libubsan1-armel-cross libuchardet0 libunistring5:armel libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:armel
  linux-libc-dev-armel-cross m4 man-db po-debconf samtools:armel
  sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel
  zlib1g-dev:armel
0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded.
Need to get 95.5 MB of archives.
After this operation, 357 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB]
Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB]
Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB]
Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB]
Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB]
Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB]
Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB]
Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB]
Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB]
Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB]
Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.41.90.20240122-1 [3224 kB]
Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi-base amd64 13.2.0-7cross2 [41.1 kB]
Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [9284 kB]
Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:13.2.1-2 [3944 B]
Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB]
Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-ports all 13.2.0-7cross2 [36.6 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.37-12cross1 [884 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 13.2.0-7cross2 [38.3 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 13.2.0-7cross2 [105 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 13.2.0-7cross2 [9120 B]
Get:29 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 13.2.0-7cross2 [2382 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 13.2.0-7cross2 [534 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 13.2.0-7cross2 [965 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armel-cross all 13.2.0-7cross2 [775 kB]
Get:33 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [18.2 MB]
Get:34 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:13.2.1-2 [1476 B]
Get:35 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.5.8-1cross1 [1975 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.37-12cross1 [1292 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armel-cross all 13.2.0-7cross2 [2215 kB]
Get:38 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [10.2 MB]
Get:39 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:13.2.1-2 [1180 B]
Get:40 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB]
Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB]
Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.10 [3484 B]
Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.13 [85.0 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB]
Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:63 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB]
Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB]
Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB]
Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.13 [889 kB]
Get:69 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.4.0-7 [40.3 kB]
Get:70 http://localhost:3142/debian sid/main armel gcc-14-base armel 14-20240127-1 [42.0 kB]
Get:71 http://localhost:3142/debian sid/main armel libgcc-s1 armel 14-20240127-1 [38.9 kB]
Get:72 http://localhost:3142/debian sid/main armel libc6 armel 2.37-14 [2138 kB]
Get:73 http://localhost:3142/debian sid/main armel libasan6 armel 11.4.0-7 [1944 kB]
Get:74 http://localhost:3142/debian sid/main armel libatomic1 armel 14-20240127-1 [9436 B]
Get:75 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.3.dfsg-3+b1 [74.6 kB]
Get:76 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.36-4 [96.9 kB]
Get:77 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.36-4 [126 kB]
Get:78 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-5 [30.0 kB]
Get:79 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.47.0-2+b1 [19.4 kB]
Get:80 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-5 [74.6 kB]
Get:81 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-2+b2 [8128 B]
Get:82 http://localhost:3142/debian sid/main armel libssl3 armel 3.1.4-2 [1644 kB]
Get:83 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-5 [285 kB]
Get:84 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-5 [111 kB]
Get:85 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.4+ds-1 [69.4 kB]
Get:86 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-3 [33.2 kB]
Get:87 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.4+ds-1 [180 kB]
Get:88 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-3 [61.6 kB]
Get:89 http://localhost:3142/debian sid/main armel libc6-dev armel 2.37-14 [1294 kB]
Get:90 http://localhost:3142/debian sid/main armel zlib1g-dev armel 1:1.3.dfsg-3+b1 [905 kB]
Get:91 http://localhost:3142/debian sid/main armel libbam-dev armel 0.1.19+dfsg-6 [106 kB]
Get:92 http://localhost:3142/debian sid/main armel libbrotli1 armel 1.1.0-2+b3 [306 kB]
Get:93 http://localhost:3142/debian sid/main armel libbz2-1.0 armel 1.0.8-5+b2 [36.1 kB]
Get:94 http://localhost:3142/debian sid/main armel libgmp10 armel 2:6.3.0+dfsg-2 [502 kB]
Get:95 http://localhost:3142/debian sid/main armel libnettle8 armel 3.9.1-2 [301 kB]
Get:96 http://localhost:3142/debian sid/main armel libhogweed6 armel 3.9.1-2 [314 kB]
Get:97 http://localhost:3142/debian sid/main armel libunistring5 armel 1.1-2 [394 kB]
Get:98 http://localhost:3142/debian sid/main armel libidn2-0 armel 2.3.7-1 [124 kB]
Get:99 http://localhost:3142/debian sid/main armel libffi8 armel 3.4.4-2 [19.6 kB]
Get:100 http://localhost:3142/debian sid/main armel libp11-kit0 armel 0.25.3-4 [400 kB]
Get:101 http://localhost:3142/debian sid/main armel libtasn1-6 armel 4.19.0-3+b2 [43.2 kB]
Get:102 http://localhost:3142/debian sid/main armel libgnutls30 armel 3.8.3-1 [1333 kB]
Get:103 http://localhost:3142/debian sid/main armel libdb5.3 armel 5.3.28+dfsg2-4+b1 [577 kB]
Get:104 http://localhost:3142/debian sid/main armel libsasl2-modules-db armel 2.1.28+dfsg1-4+b1 [18.3 kB]
Get:105 http://localhost:3142/debian sid/main armel libsasl2-2 armel 2.1.28+dfsg1-4+b1 [49.9 kB]
Get:106 http://localhost:3142/debian sid/main armel libldap-2.5-0 armel 2.5.13+dfsg-5+b3 [158 kB]
Get:107 http://localhost:3142/debian sid/main armel libnghttp2-14 armel 1.58.0-1 [62.0 kB]
Get:108 http://localhost:3142/debian sid/main armel libpsl5 armel 0.21.2-1+b1 [57.9 kB]
Get:109 http://localhost:3142/debian sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB]
Get:110 http://localhost:3142/debian sid/main armel libssh2-1 armel 1.11.0-4 [196 kB]
Get:111 http://localhost:3142/debian sid/main armel libzstd1 armel 1.5.5+dfsg2-2 [256 kB]
Get:112 http://localhost:3142/debian sid/main armel libcurl3-gnutls armel 8.5.0-2 [373 kB]
Get:113 http://localhost:3142/debian sid/main armel libcurl4-gnutls-dev armel 8.5.0-2 [484 kB]
Get:114 http://localhost:3142/debian sid/main armel libdeflate0 armel 1.18-1 [33.5 kB]
Get:115 http://localhost:3142/debian sid/main armel libdeflate-dev armel 1.18-1 [41.5 kB]
Get:116 http://localhost:3142/debian sid/main armel libgomp1 armel 14-20240127-1 [112 kB]
Get:117 http://localhost:3142/debian sid/main armel libstdc++6 armel 14-20240127-1 [594 kB]
Get:118 http://localhost:3142/debian sid/main armel libubsan1 armel 14-20240127-1 [1034 kB]
Get:119 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.4.0-7 [702 kB]
Get:120 http://localhost:3142/debian sid/main armel libhtscodecs2 armel 1.6.0-1 [61.7 kB]
Get:121 http://localhost:3142/debian sid/main armel liblzma5 armel 5.4.5-0.3 [227 kB]
Get:122 http://localhost:3142/debian sid/main armel libhts3 armel 1.18+ds-1 [385 kB]
Get:123 http://localhost:3142/debian sid/main armel liblzma-dev armel 5.4.5-0.3 [281 kB]
Get:124 http://localhost:3142/debian sid/main armel libhts-dev armel 1.18+ds-1 [1571 kB]
Get:125 http://localhost:3142/debian sid/main armel libtinfo6 armel 6.4+20240113-1 [326 kB]
Get:126 http://localhost:3142/debian sid/main armel libncurses6 armel 6.4+20240113-1 [82.8 kB]
Get:127 http://localhost:3142/debian sid/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB]
Get:128 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.4.0-7 [1989 kB]
Get:129 http://localhost:3142/debian sid/main armel samtools armel 1.19-1 [609 kB]
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Selecting previously unselected package libldap-2.5-0:armel.
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Unpacking libldap-2.5-0:armel (2.5.13+dfsg-5+b3) ...
Selecting previously unselected package libnghttp2-14:armel.
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Unpacking libnghttp2-14:armel (1.58.0-1) ...
Selecting previously unselected package libpsl5:armel.
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Unpacking libpsl5:armel (0.21.2-1+b1) ...
Selecting previously unselected package librtmp1:armel.
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Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armel.
Preparing to unpack .../108-libssh2-1_1.11.0-4_armel.deb ...
Unpacking libssh2-1:armel (1.11.0-4) ...
Selecting previously unselected package libzstd1:armel.
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Unpacking libzstd1:armel (1.5.5+dfsg2-2) ...
Selecting previously unselected package libcurl3-gnutls:armel.
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Unpacking libcurl3-gnutls:armel (8.5.0-2) ...
Selecting previously unselected package libcurl4-gnutls-dev:armel.
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Unpacking libcurl4-gnutls-dev:armel (8.5.0-2) ...
Selecting previously unselected package libdeflate0:armel.
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Unpacking libdeflate0:armel (1.18-1) ...
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Unpacking libdeflate-dev:armel (1.18-1) ...
Selecting previously unselected package libgomp1:armel.
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Selecting previously unselected package libstdc++6:armel.
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Selecting previously unselected package libubsan1:armel.
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Selecting previously unselected package libgcc-11-dev:armel.
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Unpacking libgcc-11-dev:armel (11.4.0-7) ...
Selecting previously unselected package libhtscodecs2:armel.
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Unpacking libhtscodecs2:armel (1.6.0-1) ...
Selecting previously unselected package liblzma5:armel.
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Unpacking liblzma5:armel (5.4.5-0.3) ...
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Unpacking liblzma-dev:armel (5.4.5-0.3) ...
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Selecting previously unselected package libtinfo6:armel.
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Selecting previously unselected package libstdc++-11-dev:armel.
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Unpacking libstdc++-11-dev:armel (11.4.0-7) ...
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Unpacking samtools:armel (1.19-1) ...
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Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ...
Setting up libconfig-inifiles-perl (3.000003-2) ...
Setting up libpipeline1:amd64 (1.5.7-1+b2) ...
Setting up gcc-11-base:armel (11.4.0-7) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up binutils-arm-linux-gnueabi (2.41.90.20240122-1) ...
Setting up libicu72:amd64 (72.1-4) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up libmagic-mgc (1:5.45-2+b1) ...
Setting up gcc-14-base:armel (14-20240127-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.13) ...
Setting up libmagic1:amd64 (1:5.45-2+b1) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up gcc-13-arm-linux-gnueabi-base:amd64 (13.2.0-7cross2) ...
Setting up file (1:5.45-2+b1) ...
Setting up libyaml-perl (1.31-1) ...
Setting up libsparsehash-dev (2.0.3-2) ...
Setting up linux-libc-dev-armel-cross (6.5.8-1cross1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up cross-config (2.6.20) ...
Setting up autopoint (0.21-14) ...
Setting up autoconf (2.71-3) ...
Setting up libc6-armel-cross (2.37-12cross1) ...
Setting up sensible-utils (0.0.20) ...
Setting up libuchardet0:amd64 (0.0.8-1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libc6-dev-armel-cross (2.37-12cross1) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up gcc-13-cross-base-ports (13.2.0-7cross2) ...
Setting up libelf1:amd64 (0.190-1+b1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ...
Setting up liblocale-gettext-perl (1.07-6+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-14) ...
Setting up cpp-13-arm-linux-gnueabi (13.2.0-7cross2) ...
Setting up libgomp1-armel-cross (13.2.0-7cross2) ...
Setting up libtool (2.4.7-7) ...
Setting up libgcc-s1-armel-cross (13.2.0-7cross2) ...
Setting up libstdc++6-armel-cross (13.2.0-7cross2) ...
Setting up libatomic1-armel-cross (13.2.0-7cross2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up cpp-arm-linux-gnueabi (4:13.2.1-2) ...
Setting up libubsan1-armel-cross (13.2.0-7cross2) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libasan8-armel-cross (13.2.0-7cross2) ...
Setting up libgcc-13-dev-armel-cross (13.2.0-7cross2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up gcc-13-arm-linux-gnueabi (13.2.0-7cross2) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libstdc++-13-dev-armel-cross (13.2.0-7cross2) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gcc-arm-linux-gnueabi (4:13.2.1-2) ...
Setting up g++-13-arm-linux-gnueabi (13.2.0-7cross2) ...
Setting up debhelper (13.13) ...
Setting up g++-arm-linux-gnueabi (4:13.2.1-2) ...
Setting up libxml-simple-perl (2.25-2) ...
Setting up libconfig-auto-perl (0.44-2) ...
Setting up libdebian-dpkgcross-perl (2.6.20) ...
Setting up dpkg-cross (2.6.20) ...
Setting up crossbuild-essential-armel (12.10) ...
Setting up libgcc-s1:armel (14-20240127-1) ...
Setting up libc6:armel (2.37-14) ...
Setting up libffi8:armel (3.4.4-2) ...
Setting up libtasn1-6:armel (4.19.0-3+b2) ...
Setting up libbz2-1.0:armel (1.0.8-5+b2) ...
Setting up libdb5.3:armel (5.3.28+dfsg2-4+b1) ...
Setting up libstdc++6:armel (14-20240127-1) ...
Setting up libtinfo6:armel (6.4+20240113-1) ...
Setting up libhtscodecs2:armel (1.6.0-1) ...
Setting up libzstd1:armel (1.5.5+dfsg2-2) ...
Setting up libkeyutils1:armel (1.6.3-2+b2) ...
Setting up liblzma5:armel (5.4.5-0.3) ...
Setting up libbrotli1:armel (1.1.0-2+b3) ...
Setting up libnghttp2-14:armel (1.58.0-1) ...
Setting up libdeflate0:armel (1.18-1) ...
Setting up zlib1g:armel (1:1.3.dfsg-3+b1) ...
Setting up libcrypt1:armel (1:4.4.36-4) ...
Setting up libcom-err2:armel (1.47.0-2+b1) ...
Setting up libgomp1:armel (14-20240127-1) ...
Setting up libasan6:armel (11.4.0-7) ...
Setting up libkrb5support0:armel (1.20.1-5) ...
Setting up libsasl2-modules-db:armel (2.1.28+dfsg1-4+b1) ...
Setting up libnettle8:armel (3.9.1-2) ...
Setting up libgmp10:armel (2:6.3.0+dfsg-2) ...
Setting up libncurses6:armel (6.4+20240113-1) ...
Setting up libp11-kit0:armel (0.25.3-4) ...
Setting up libunistring5:armel (1.1-2) ...
Setting up libatomic1:armel (14-20240127-1) ...
Setting up libk5crypto3:armel (1.20.1-5) ...
Setting up liblzma-dev:armel (5.4.5-0.3) ...
Setting up libubsan1:armel (14-20240127-1) ...
Setting up libgcc-11-dev:armel (11.4.0-7) ...
Setting up libcrypt-dev:armel (1:4.4.36-4) ...
Setting up libdeflate-dev:armel (1.18-1) ...
Setting up libhogweed6:armel (3.9.1-2) ...
Setting up libssl3:armel (3.1.4-2) ...
Setting up libidn2-0:armel (2.3.7-1) ...
Setting up libgnutls30:armel (3.8.3-1) ...
Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsasl2-2:armel (2.1.28+dfsg1-4+b1) ...
Setting up libssh2-1:armel (1.11.0-4) ...
Setting up libkrb5-3:armel (1.20.1-5) ...
Setting up libpsl5:armel (0.21.2-1+b1) ...
Setting up libldap-2.5-0:armel (2.5.13+dfsg-5+b3) ...
Setting up libgssapi-krb5-2:armel (1.20.1-5) ...
Setting up libtirpc3:armel (1.3.4+ds-1) ...
Setting up libcurl3-gnutls:armel (8.5.0-2) ...
Setting up libcurl4-gnutls-dev:armel (8.5.0-2) ...
Setting up libtirpc-dev:armel (1.3.4+ds-1) ...
Setting up libnsl2:armel (1.3.0-3) ...
Setting up libhts3:armel (1.18+ds-1) ...
Setting up samtools:armel (1.19-1) ...
Setting up libnsl-dev:armel (1.3.0-3) ...
Setting up libc6-dev:armel (2.37-14) ...
Setting up libstdc++-11-dev:armel (11.4.0-7) ...
Setting up zlib1g-dev:armel (1:1.3.dfsg-3+b1) ...
Setting up libhts-dev:armel (1.18+ds-1) ...
Setting up libbam-dev:armel (0.1.19+dfsg-6) ...
Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.37-14) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armel included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64)
Toolchain package versions: binutils_2.41.90.20240122-1 dpkg-dev_1.22.4 g++-11_11.4.0-7 g++-13_13.2.0-12 gcc-11_11.4.0-7 gcc-13_13.2.0-12 libc6-dev_2.37-14 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-12 libstdc++-13-dev-armel-cross_13.2.0-7cross2 libstdc++6_14-20240127-1 libstdc++6-armel-cross_13.2.0-7cross2 linux-libc-dev_6.6.13-1
Package versions: adduser_3.137 apt_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.90.20240122-1 binutils-arm-linux-gnueabi_2.41.90.20240122-1 binutils-common_2.41.90.20240122-1 binutils-x86-64-linux-gnu_2.41.90.20240122-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-4 cpp-11_11.4.0-7 cpp-13_13.2.0-12 cpp-13-arm-linux-gnueabi_13.2.0-7cross2 cpp-13-x86-64-linux-gnu_13.2.0-12 cpp-arm-linux-gnueabi_4:13.2.1-2 cpp-x86-64-linux-gnu_4:13.2.0-4 cross-config_2.6.20 crossbuild-essential-armel_12.10 dash_0.5.12-6 debconf_1.5.85 debhelper_13.13 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.4 dpkg-cross_2.6.20 dpkg-dev_1.22.4 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.33-1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-4 g++-11_11.4.0-7 g++-13_13.2.0-12 g++-13-arm-linux-gnueabi_13.2.0-7cross2 g++-13-x86-64-linux-gnu_13.2.0-12 g++-arm-linux-gnueabi_4:13.2.1-2 g++-x86-64-linux-gnu_4:13.2.0-4 gcc_4:13.2.0-4 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-14 gcc-13_13.2.0-12 gcc-13-arm-linux-gnueabi_13.2.0-7cross2 gcc-13-arm-linux-gnueabi-base_13.2.0-7cross2 gcc-13-base_13.2.0-12 gcc-13-cross-base-ports_13.2.0-7cross2 gcc-13-x86-64-linux-gnu_13.2.0-12 gcc-14-base_14-20240127-1 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabi_4:13.2.1-2 gcc-x86-64-linux-gnu_4:13.2.0-4 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0_2.7.10 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_14-20240127-1 libasan8-armel-cross_13.2.0-7cross2 libatomic1_14-20240127-1 libatomic1-armel-cross_13.2.0-7cross2 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbam-dev_0.1.19+dfsg-6 libbinutils_2.41.90.20240122-1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-14 libc-dev-bin_2.37-14 libc6_2.37-14 libc6-armel-cross_2.37-12cross1 libc6-dev_2.37-14 libc6-dev-armel-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_14-20240127-1 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.90.20240122-1 libctf0_2.41.90.20240122-1 libcurl3-gnutls_8.5.0-2 libcurl4-gnutls-dev_8.5.0-2 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.13 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdpkg-perl_1.22.4 libelf1_0.190-1+b1 libext2fs2_1.47.0-2+b1 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-12 libgcc-13-dev-armel-cross_13.2.0-7cross2 libgcc-s1_14-20240127-1 libgcc-s1-armel-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_14-20240127-1 libgomp1-armel-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.90.20240122-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libhwasan0_14-20240127-1 libicu72_72.1-4 libidn2-0_2.3.7-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240127-1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libldap-2.5-0_2.5.13+dfsg-5+b3 liblocale-gettext-perl_1.07-6+b1 liblsan0_14-20240127-1 liblz4-1_1.9.4-1+b2 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libncurses6_6.4+20240113-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1+b2 libpsl5_0.21.2-1+b1 libquadmath0_14-20240127-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4+b1 libsasl2-modules-db_2.1.28+dfsg1-4+b1 libseccomp2_2.5.5-1 libselinux1_3.5-2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.90.20240122-1 libsmartcols1_2.39.3-6 libsparsehash-dev_2.0.3-2 libss2_1.47.0-2+b1 libssh2-1_1.11.0-4 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-12 libstdc++-13-dev-armel-cross_13.2.0-7cross2 libstdc++6_14-20240127-1 libstdc++6-armel-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.3-1 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_14-20240127-1 libubsan1_14-20240127-1 libubsan1-armel-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.3-1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.13-1 linux-libc-dev-armel-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3+b1 zlib1g-dev_1:1.3.dfsg-3+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: stacks
Binary: stacks
Architecture: any
Version: 2.66+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org>
Homepage: https://creskolab.uoregon.edu/stacks/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/stacks
Vcs-Git: https://salsa.debian.org/med-team/stacks.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev
Package-List:
 stacks deb science optional arch=any
Checksums-Sha1:
 385fa639bf9e6404984e3f92390b91f12f70477d 339220 stacks_2.66+dfsg.orig.tar.xz
 15689298d93b191899eb8595721abc3532bb2585 12128 stacks_2.66+dfsg-1.debian.tar.xz
Checksums-Sha256:
 ebfe03f3ff69f9e398e891ae055c75d09f0f5e46a4094be5b75268eae410cf95 339220 stacks_2.66+dfsg.orig.tar.xz
 10cf0e2485079286ec96d0d3a256c8f89a42670b9d57d932d98c03bac4140f65 12128 stacks_2.66+dfsg-1.debian.tar.xz
Files:
 ad4aa860ad9e955b5add40699f74ee1d 339220 stacks_2.66+dfsg.orig.tar.xz
 5f9ede170e0058c49fe7bbf2193676ae 12128 stacks_2.66+dfsg-1.debian.tar.xz

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gpgv: Signature made Tue Jan 23 12:37:41 2024 UTC
gpgv:                using RSA key 4A31DB5A1EE4096C87399880903649294C33F9B7
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./stacks_2.66+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting stacks in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking stacks_2.66+dfsg.orig.tar.xz
dpkg-source: info: unpacking stacks_2.66+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying RisR.patch
dpkg-source: info: applying script-exe-paths
dpkg-source: info: applying use_debian_packaged_htslib.patch
dpkg-source: info: applying fix_spelling_errors.patch
dpkg-source: info: applying change_program_exit_to_success.patch
dpkg-source: info: applying offer_help_option_for_stacks_gdb.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.nyx1eAIvpF/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-1e3347b8-6186-441e-b7b9-242a80260149
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package stacks
dpkg-buildpackage: info: source version 2.66+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Lance Lin <lq27267@gmail.com>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
 debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f ./constants.php
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:28: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
configure.ac:28: the top level
configure.ac:20: installing 'config/ar-lib'
configure.ac:15: installing 'config/compile'
configure.ac:42: installing 'config/config.guess'
configure.ac:42: installing 'config/config.sub'
configure.ac:7: installing 'config/install-sh'
configure.ac:7: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
parallel-tests: installing 'config/test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-sparsehash --enable-bam \
         --with-bam-include-path=/usr/include/samtools \
	 --with-bam-lib-path=/usr/lib
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib
configure: loading site script /etc/dpkg-cross/cross-config.armel
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether arm-linux-gnueabi-g++ accepts -g... yes
checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of arm-linux-gnueabi-g++... none
checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc
checking whether the compiler supports GNU C... yes
checking whether arm-linux-gnueabi-gcc accepts -g... yes
checking for arm-linux-gnueabi-gcc option to enable C11 features... none needed
checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes
checking dependency style of arm-linux-gnueabi-gcc... none
checking whether arm-linux-gnueabi-g++ supports C++11 features by default... yes
checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib
checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar
checking the archiver (arm-linux-gnueabi-ar) interface... ar
checking for omp_set_num_threads in -lgomp... yes
checking for gzread in -lz... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for float.h... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for arm-linux-gnueabi-gcc option to support OpenMP... -fopenmp
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether closedir returns void... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... arm-unknown-linux-gnueabi
checking for GNU libc compatible malloc... (cached) yes
checking for GNU libc compatible realloc... (cached) yes
checking for floor... no
checking for memset... yes
checking for pow... no
checking for sqrt... no
checking for clock_gettime... yes
checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater.
no
checking for gawk... (cached) mawk
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make  all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/set:62,
                 from src/constants.h:43,
                 from src/ustacks.h:24,
                 from src/ustacks.cc:25:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algobase.h:71,
                 from /usr/arm-linux-gnueabi/include/c++/13/bits/specfun.h:43,
                 from /usr/arm-linux-gnueabi/include/c++/13/cmath:3699,
                 from src/constants.h:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >; _Iterator2 = __gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  157 |         operator()(_Iterator1 __it1, _Iterator2 __it2)
      |         ^~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Aln>::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/map:63,
                 from src/constants.h:44:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2599:46:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2599:83:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘int dump_stack_graph(std::string, std::map<int, Stack*>&, std::map<int, MergedStack*>&, std::vector<int>&, std::map<int, std::map<int, double> >&, std::map<int, std::set<int> >&)’ at src/ustacks.cc:2604:42:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/algorithm:61,
                 from src/constants.h:53:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1819:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1819 |           if (__comp(__i, __first))
      |               ~~~~~~^~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1854 |     __final_insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Aln; _Alloc = std::allocator<Aln>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_Z15search_for_gapsRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEE._omp_fn.0’ at src/ustacks.cc:675:42:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Distance = int; _Tp = Aln; _Compare = __gnu_cxx::__ops::_Iter_comp_val<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  135 |     __push_heap(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Distance = int; _Tp = Aln; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  232 |           if (__comp(__first + __secondChild,
      |               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
  233 |                      __first + (__secondChild - 1)))
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1631 |     __heap_select(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1637:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1637 |         if (__comp(__i, __first))
      |             ~~~~~~^~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1926:27:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1910:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1910 |       std::__heap_select(__first, __middle, __last, __comp);
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1897:34,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1931:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:88:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   88 |       if (__comp(__a, __b))
      |           ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:90:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   90 |           if (__comp(__b, __c))
      |               ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:92:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   92 |           else if (__comp(__a, __c))
      |                    ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:97:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   97 |       else if (__comp(__a, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:99:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
   99 |       else if (__comp(__b, __c))
      |                ~~~~~~^~~~~~~~~~
In function ‘_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1899:40,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1931:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1877:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1877 |           while (__comp(__first, __pivot))
      |                  ~~~~~~^~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1880:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1880 |           while (__comp(__pivot, __last))
      |                  ~~~~~~^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘_Z28search_for_gapped_remaindersRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEERS_IiP5StackS3_SaIS4_IS5_SB_EEERS_IiP3RemS3_SaIS4_IS5_SH_EEE._omp_fn.0’ at src/ustacks.cc:967:17:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Aln}; _Tp = Aln; _Alloc = std::allocator<Aln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Aln; _Alloc = std::allocator<Aln>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_Z28search_for_gapped_remaindersRSt3mapIiP11MergedStackSt4lessIiESaISt4pairIKiS1_EEERS_IiP5StackS3_SaIS4_IS5_SB_EEERS_IiP3RemS3_SaIS4_IS5_SH_EEE._omp_fn.0’ at src/ustacks.cc:958:39:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int merge_gapped_alns(std::map<int, Stack*>&, std::map<int, Rem*>&, std::map<int, MergedStack*>&)’ at src/ustacks.cc:300:13:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Aln, Aln)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Aln*, vector<Aln> >; _Compare = bool (*)(Aln, Aln)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int merge_gapped_alns(std::map<int, Stack*>&, std::map<int, Rem*>&, std::map<int, MergedStack*>&)’ at src/ustacks.cc:316:13:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Aln*, std::vector<Aln> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/input.o src/input.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc
src/MetaPopInfo.cc: In member function ‘void MetaPopInfo::fill_pop_indexes(std::map<int, std::pair<int, int> >&) const’:
src/MetaPopInfo.cc:427:30: warning: narrowing conversion of ‘i’ from ‘std::size_t’ {aka ‘unsigned int’} to ‘int’ [-Wnarrowing]
  427 |         pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} );
      |                              ^
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/models.o src/models.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/set:62,
                 from src/constants.h:43,
                 from src/models.h:24,
                 from src/models.cc:30:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = Nt2; _Val = std::pair<const Nt2, double>; _KeyOfValue = std::_Select1st<std::pair<const Nt2, double> >; _Compare = std::less<Nt2>; _Alloc = std::allocator<std::pair<const Nt2, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree<Nt2, std::pair<const Nt2, double>, std::_Select1st<std::pair<const Nt2, double> >, std::less<Nt2>, std::allocator<std::pair<const Nt2, double> > >::const_iterator’ changed in GCC 7.1
 2210 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MarukiLowModel::LikData}; _Tp = MarukiLowModel::LikData; _Alloc = std::allocator<MarukiLowModel::LikData>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<MarukiLowModel::LikData>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MarukiLowModel::LikData}; _Tp = MarukiLowModel::LikData; _Alloc = std::allocator<MarukiLowModel::LikData>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<MarukiLowModel::LikData*, std::vector<MarukiLowModel::LikData> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40,
                 from src/Vcf.h:24,
                 from src/Vcf.cc:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘static std::string VcfRecord::util::fmt_gt_gl(const std::vector<Nt2>&, const GtLiks&)’ at src/Vcf.cc:206:24:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libcore.a
arm-linux-gnueabi-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o  
arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libcore.a
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/MetaPopInfo.h:5,
                 from src/cstacks.cc:25:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/algorithm:61,
                 from src/constants.h:53,
                 from src/MetaPopInfo.h:8:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/13/regex:52,
                 from src/sstacks.cc:25:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, AlignRes>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/regex:59:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>}; _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> >::iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/regex:55:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, AlignRes>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’ changed in GCC 7.1
 2210 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>&}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, AlignRes>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>}; _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, AlignRes>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, AlignRes> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1032:31:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1033:13:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, AlignRes>*, vector<pair<__cxx11::basic_string<char>, AlignRes> > >; _Compare = verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)::<lambda(pair<__cxx11::basic_string<char>, AlignRes>&, pair<__cxx11::basic_string<char>, AlignRes>&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1033:13:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, AlignRes>*, std::vector<std::pair<std::__cxx11::basic_string<char>, AlignRes> > >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/regex:56:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, AlignRes>&}; _Key = std::__cxx11::basic_string<char>; _Tp = AlignRes; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’,
    inlined from ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair<std::__cxx11::basic_string<char>, AlignRes>&; _Key = std::__cxx11::basic_string<char>; _Tp = AlignRes; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:860:27,
    inlined from ‘bool verify_gapped_match(std::map<int, Locus*>&, QLocus*, std::set<int>&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, AlignRes> >&, uint&, uint&, uint&, uint&, uint&)’ at src/sstacks.cc:1042:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:640:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, AlignRes>::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, AlignRes>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, AlignRes> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, AlignRes> > >::const_iterator’} changed in GCC 7.1
  640 |           return _M_t._M_emplace_hint_unique(__pos,
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
  641 |                                              std::forward<_Args>(__args)...);
      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/write.o src/write.cc
rm -f libclean.a
arm-linux-gnueabi-ar cru libclean.a src/clean.o src/file_io.o src/write.o 
arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libclean.a
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/13/algorithm:61,
                 from src/constants.h:53,
                 from src/populations.h:45,
                 from src/populations.cc:29:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘_ForwardIterator std::__upper_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2022:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2022 |     __upper_bound(_ForwardIterator __first, _ForwardIterator __last,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2022:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1854 |     __final_insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/populations.h:41:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4861:18,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = HapStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2070:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2070 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2071 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_ZN9BootstrapI7HapStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4861:18,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = SumStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2070:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2070 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2071 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = SumStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7SumStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2070:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2070 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2071 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4861:18,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = PopPair]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2070:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2070 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2071 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4861:18,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_ZN9BootstrapI7PopPairE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4861:18,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:250:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1950 |           std::__final_insertion_sort(__first, __last, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::upper_bound(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Tp = double]’,
    inlined from ‘double Bootstrap<StatT>::pval(double, std::vector<double>&) [with StatT = LocStat]’ at src/bootstrap.h:268:39,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:251:22:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:2070:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 2070 |       return std::__upper_bound(__first, __last, __val,
      |              ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
 2071 |                                 __gnu_cxx::__ops::__val_less_iter());
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘_ZN9BootstrapI7LocStatE7executeERSt6vectorIPS0_SaIS3_EE._omp_fn.0’ at src/bootstrap.h:243:49:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/bootstrap.o src/bootstrap.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40,
                 from src/bootstrap.h:24,
                 from src/bootstrap.cc:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 2>}; _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 2> >::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 3>}; _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 3> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 1>}; _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 1> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array<double, 4>}; _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::array<double, 4> >::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 2>}; _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 2>; _Alloc = std::allocator<std::array<double, 2> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:246:46:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 2>*, std::vector<std::array<double, 2> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 3>}; _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 3>; _Alloc = std::allocator<std::array<double, 3> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:258:46:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 3>*, std::vector<std::array<double, 3> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 1>}; _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 1>; _Alloc = std::allocator<std::array<double, 1> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:273:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 1>*, std::vector<std::array<double, 1> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array<double, 4>}; _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array<double, 4>; _Alloc = std::allocator<std::array<double, 4> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int BSArchive::parse_archive()’ at src/bootstrap.cc:291:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::array<double, 4>*, std::vector<std::array<double, 4> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc
src/export_formats.cc: In member function ‘virtual int PhylipVarAllExport::post_processing()’:
src/export_formats.cc:2375:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
 2375 |     sprintf(s, "%11lu", this->_seq_len);
      |                 ~~~~^   ~~~~~~~~~~~~~~
      |                     |         |
      |                     |         std::size_t {aka unsigned int}
      |                     long unsigned int
      |                 %11u
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/mapping_utils.o src/mapping_utils.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/map:62,
                 from src/PopSum.h:27,
                 from src/PopSum.cc:21:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2210 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/PopSum.h:26:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:969:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:970:42:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:971:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:972:44:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:973:39:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:974:43:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:975:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘LocusDivergence::LocusDivergence(const MetaPopInfo*)’ at src/PopSum.cc:976:42:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2210 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/map:63:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double count_haplotypes_at_locus(int, int, const Datum* const*, std::map<std::__cxx11::basic_string<char>, double>&)’ at src/PopSum.cc:955:45:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2073:47:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2074:55:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2079:30:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2093:68:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2096:53:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_dxy(const Datum**, std::size_t, std::vector<int>&)’ at src/PopSum.cc:2096:72:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘LocStat* LocPopSum::haplotype_diversity(int, int, const Datum* const*)’ at src/PopSum.cc:843:39:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘LocStat* LocPopSum::haplotype_diversity(int, int, const Datum* const*)’ at src/PopSum.cc:844:39:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2000:51:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2001:59:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  532 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  533 |                                         std::forward_as_tuple(std::move(__k)),
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  534 |                                         std::tuple<>());
      |                                         ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2007:30:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2017:61:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2017:82:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2018:65:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2018:86:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2029:51:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2029:88:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2030:35:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
    inlined from ‘double LocusDivergence::haplotype_d_est(const Datum**, const LocSum**, std::vector<int>&)’ at src/PopSum.cc:2030:57:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc
src/Hwp.cc: In member function ‘void HWMatrix::dump_matrix()’:
src/Hwp.cc:383:43: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
  383 |                 snprintf(buf, id_len, "%*lu  ", padding, this->_g[i][j]);
      |                                        ~~~^              ~~~~~~~~~~~~~~
      |                                           |                           |
      |                                           long unsigned int           std::size_t {aka unsigned int}
      |                                        %*u
rm -f libpop.a
arm-linux-gnueabi-ar cru libpop.a src/bootstrap.o src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o 
arm-linux-gnueabi-ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabi-ranlib libpop.a
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/phasedstacks.h:39,
                 from src/phasedstacks.cc:25:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int bucket_dprime(std::vector<double>&, std::vector<double>&, PhasedSummary*)’ at src/phasedstacks.cc:284:37:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int bucket_dprime(std::vector<double>&, std::vector<double>&, PhasedSummary*)’ at src/phasedstacks.cc:285:41:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp 
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc
src/gstacks.cc: In member function ‘bool LocusProcessor::align_reads_to_contig(SuffixTree*, GappedAln*, DNASeq4&, AlignRes&) const’:
src/gstacks.cc:1365:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wformat=]
 1365 |         snprintf(c, id_len, "%luM", query.length());
      |                              ~~^    ~~~~~~~~~~~~~~
      |                                |                |
      |                                |                std::__cxx11::basic_string<char>::size_type {aka unsigned int}
      |                                long unsigned int
      |                              %u
src/gstacks.cc: In member function ‘std::size_t LocusProcessor::find_locus_overlap(SuffixTree*, GappedAln*, const DNASeq4&, std::string&) const’:
src/gstacks.cc:1551:38: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::size_t’ {aka ‘unsigned int’} [-Wformat=]
 1551 |             snprintf(buf, id_len, "%luM", alns.front().aln_len);
      |                                    ~~^    ~~~~~~~~~~~~~~~~~~~~
      |                                      |                 |
      |                                      long unsigned int std::size_t {aka unsigned int}
      |                                    %u
In file included from /usr/arm-linux-gnueabi/include/c++/13/algorithm:61,
                 from src/constants.h:53,
                 from src/gstacks.h:23,
                 from src/gstacks.cc:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algobase.h:71,
                 from /usr/arm-linux-gnueabi/include/c++/13/bits/specfun.h:43,
                 from /usr/arm-linux-gnueabi/include/c++/13/cmath:3699,
                 from src/constants.h:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >; _Iterator2 = __gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  157 |         operator()(_Iterator1 __it1, _Iterator2 __it2)
      |         ^~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1819:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1819 |           if (__comp(__i, __first))
      |               ~~~~~~^~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Distance = int; _Tp = STAln; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  232 |           if (__comp(__first + __secondChild,
      |               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
  233 |                      __first + (__secondChild - 1)))
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const STAln&}; _Tp = STAln; _Alloc = std::allocator<STAln>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<STAln>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<AlignRes>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<STAln>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {STLink}; _Tp = STLink; _Alloc = std::allocator<STLink>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<STLink>::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<double, Nt2>}; _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, Nt2> >::iterator’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1792 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1812 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Distance = int; _Tp = AlignRes; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:924:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_local_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:928:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlignRes}; _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlignRes; _Alloc = std::allocator<AlignRes>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:778:23:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const AlignRes&, const AlignRes&)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<AlignRes*, vector<AlignRes> >; _Compare = bool (*)(const AlignRes&, const AlignRes&)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int GappedAln::trace_global_alignment(const std::string&, const std::string&)’ at src/GappedAln.h:782:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlignRes*, std::vector<AlignRes> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1918 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1897:34,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1931:38:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:88:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   88 |       if (__comp(__a, __b))
      |           ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:90:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   90 |           if (__comp(__b, __c))
      |               ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:92:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   92 |           else if (__comp(__a, __c))
      |                    ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:97:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   97 |       else if (__comp(__a, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:99:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
   99 |       else if (__comp(__b, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1932 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1393:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1947 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1948 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1949 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<STAln*, vector<STAln> >; _Compare = LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const::<lambda(STAln, STAln)>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1393:9:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1859 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1864 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STLink}; _Tp = STLink; _Alloc = std::allocator<STLink>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STLink; _Alloc = std::allocator<STLink>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1435:40:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STLink*, std::vector<STLink> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘int LocusProcessor::suffix_tree_hits_to_dag(std::size_t, std::vector<STAln>&, std::vector<STAln>&) const’ at src/gstacks.cc:1487:29:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘bool LocusProcessor::align_reads_to_contig(SuffixTree*, GappedAln*, DNASeq4&, AlignRes&) const’ at src/gstacks.cc:1349:31:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {STAln}; _Tp = STAln; _Alloc = std::allocator<STAln>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = STAln; _Alloc = std::allocator<STAln>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘std::size_t LocusProcessor::find_locus_overlap(SuffixTree*, GappedAln*, const DNASeq4&, std::string&) const’ at src/gstacks.cc:1516:31:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<STAln*, std::vector<STAln> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, Nt2>}; _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, Nt2>; _Alloc = std::allocator<std::pair<double, Nt2> >]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘void LocusProcessor::write_one_locus(const CLocAlnSet&, const std::vector<SiteCounts>&, const std::vector<SiteCall>&, const std::vector<std::map<unsigned int, PhasedHet> >&, const std::vector<SiteMethylCounts>&)’ at src/gstacks.cc:2682:41:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, Nt2>*, std::vector<std::pair<double, Nt2> > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void LocusProcessor::write_one_locus(const CLocAlnSet&, const std::vector<SiteCounts>&, const std::vector<SiteCall>&, const std::vector<std::map<unsigned int, PhasedHet> >&, const std::vector<SiteMethylCounts>&)’ at src/gstacks.cc:2793:36:
/usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc
In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72,
                 from src/constants.h:40,
                 from src/debruijn.cc:5:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]’:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Node>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator<Node>]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘void Graph::rebuild(const std::vector<const DNASeq4*>&, std::size_t)’ at src/debruijn.cc:137:29:
/usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I.  -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc
arm-linux-gnueabi-g++  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp 
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --no-parallel
	make -j1 install DESTDIR=/<<BUILDDIR>>/stacks-2.66\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
  /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
 /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<<PKGBUILDDIR>>/debian/stacks/usr/bin'
make  install-data-hook
make[5]: Entering directory '/<<PKGBUILDDIR>>'
sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl > /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl.subst /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/denovo_map.pl
sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl > /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl.subst /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/ref_map.pl
sed -i.bkp -e 's,_VERSION_,2.66,' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments
sed -i.bkp -e 's,_VERSION_,2.66,' /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-samtools-tview
rm -f /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp
rm -f /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-samtools-tview.bkp
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-integrate-alignments
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-dist-extract
chmod +x /<<PKGBUILDDIR>>/debian/stacks/usr/bin/stacks-gdb
make[5]: Leaving directory '/<<PKGBUILDDIR>>'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/stacks/usr/libexec/stacks
mv debian/stacks/usr/bin debian/stacks/usr/libexec/stacks
cd debian/stacks/usr/libexec/stacks/bin && \
  for f in *.pl ; do \
    ln -s "$f" "`basename $f .pl`" ; \
    sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \
  done
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
mkdir -p debian/stacks/usr/libexec/debian-med/bin
cd debian/stacks/usr/libexec/debian-med/bin && \
for f in `ls /<<PKGBUILDDIR>>/debian/stacks/usr/libexec/stacks/bin` ; do \
    ln -s ../../stacks/bin/$f ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/phasedstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/process_shortreads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/tsv2bam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/cstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/sstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/populations contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/kmer_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/clone_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/ustacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/gstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/libexec/stacks/bin/process_radtags contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'stacks' in '../stacks_2.66+dfsg-1_armel.deb'.
dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.66+dfsg-1_armel.deb'.
 dpkg-genbuildinfo --build=any -O../stacks_2.66+dfsg-1_armel.buildinfo
 dpkg-genchanges --build=any -O../stacks_2.66+dfsg-1_armel.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-28T23:27:19Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


stacks_2.66+dfsg-1_armel.changes:
---------------------------------

Format: 1.8
Date: Tue, 23 Jan 2024 19:32:21 +0700
Source: stacks
Binary: stacks stacks-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armel
Version: 2.66+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Lance Lin <lq27267@gmail.com>
Description:
 stacks     - pipeline for building loci from short-read DNA sequences
Changes:
 stacks (2.66+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * d/patches: Refresh patches (change_program_exit_to_success.patch,
     fix_spelling_errors.patch, script-exe-paths)
Checksums-Sha1:
 494e1eaf68ef665864d9c08e4e6cf1d3efcac7d8 26531528 stacks-dbgsym_2.66+dfsg-1_armel.deb
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+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: stacks
Binary: stacks stacks-dbgsym
Architecture: armel
Version: 2.66+dfsg-1
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sun, 28 Jan 2024 23:27:18 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
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 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13),
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 binutils-x86-64-linux-gnu (= 2.41.90.20240122-1),
 bsdextrautils (= 2.39.3-6),
 bsdutils (= 1:2.39.3-6),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5+b2),
 coreutils (= 9.4-3+b1),
 cpp (= 4:13.2.0-4),
 cpp-11 (= 11.4.0-7),
 cpp-13 (= 13.2.0-12),
 cpp-13-x86-64-linux-gnu (= 13.2.0-12),
 cpp-x86-64-linux-gnu (= 4:13.2.0-4),
 dash (= 0.5.12-6),
 debconf (= 1.5.85),
 debhelper (= 13.13),
 debianutils (= 5.16),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.4),
 dpkg-dev (= 1.22.4),
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 file (= 1:5.45-2+b1),
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 g++-13 (= 13.2.0-12),
 g++-13-x86-64-linux-gnu (= 13.2.0-12),
 g++-x86-64-linux-gnu (= 4:13.2.0-4),
 gcc (= 4:13.2.0-4),
 gcc-11 (= 11.4.0-7),
 gcc-11-base (= 11.4.0-7),
 gcc-13 (= 13.2.0-12),
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 gettext (= 0.21-14),
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 grep (= 3.11-4),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu2),
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 libbinutils (= 2.41.90.20240122-1),
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 libbrotli1 (= 1.1.0-2+b3),
 libbz2-1.0 (= 1.0.8-5+b2),
 libc-bin (= 2.37-14),
 libc-dev-bin (= 2.37-14),
 libc6 (= 2.37-14),
 libc6-dev (= 2.37-14),
 libcap-ng0 (= 0.8.4-1),
 libcap2 (= 1:2.66-4+b2),
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 libcurl4-gnutls-dev (= 8.5.0-2),
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 libgcc-13-dev (= 13.2.0-12),
 libgcc-s1 (= 14-20240127-1),
 libgcrypt20 (= 1.10.3-2),
 libgdbm-compat4 (= 1.23-5),
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 liblsan0 (= 14-20240127-1),
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 liblzma5 (= 5.4.5-0.3),
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 libmagic1 (= 1:5.45-2+b1),
 libmd0 (= 1.1.0-2),
 libmount1 (= 2.39.3-6),
 libmpc3 (= 1.3.1-1+b2),
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 libncurses6 (= 6.4+20240113-1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnsl-dev (= 1.3.0-3),
 libnsl2 (= 1.3.0-3),
 libnumber-compare-perl (= 0.03-3),
 libp11-kit0 (= 0.25.3-4),
 libpam-modules (= 1.5.2-9.1+b1),
 libpam-modules-bin (= 1.5.2-9.1+b1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1+b1),
 libpcre2-8-0 (= 10.42-4),
 libperl5.38 (= 5.38.2-3),
 libpipeline1 (= 1.5.7-1+b2),
 libpsl5 (= 0.21.2-1+b1),
 libquadmath0 (= 14-20240127-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-4+b1),
 libsasl2-modules-db (= 2.1.28+dfsg1-4+b1),
 libseccomp2 (= 2.5.5-1),
 libselinux1 (= 3.5-2),
 libsframe1 (= 2.41.90.20240122-1),
 libsmartcols1 (= 2.39.3-6),
 libsparsehash-dev (= 2.0.3-2),
 libssh2-1 (= 1.11.0-4),
 libssl3 (= 3.1.4-2),
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 libstdc++6 (= 14-20240127-1),
 libsub-override-perl (= 0.10-1),
 libsystemd0 (= 255.3-1),
 libtasn1-6 (= 4.19.0-3+b2),
 libtext-glob-perl (= 0.11-3),
 libtinfo6 (= 6.4+20240113-1),
 libtirpc-common (= 1.3.4+ds-1),
 libtirpc-dev (= 1.3.4+ds-1),
 libtirpc3 (= 1.3.4+ds-1),
 libtool (= 2.4.7-7),
 libtsan0 (= 11.4.0-7),
 libtsan2 (= 14-20240127-1),
 libubsan1 (= 14-20240127-1),
 libuchardet0 (= 0.0.8-1),
 libudev1 (= 255.3-1),
 libunistring5 (= 1.1-2),
 libuuid1 (= 2.39.3-6),
 libxml2 (= 2.9.14+dfsg-1.3+b2),
 libzstd1 (= 1.5.5+dfsg2-2),
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 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
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 ncurses-bin (= 6.4+20240113-1),
 patch (= 2.7.6-7),
 perl (= 5.38.2-3),
 perl-base (= 5.38.2-3),
 perl-modules-5.38 (= 5.38.2-3),
 po-debconf (= 1.0.21+nmu1),
 rpcsvc-proto (= 1.4.3-1),
 samtools (= 1.19-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.20),
 sysvinit-utils (= 3.08-6),
 tar (= 1.35+dfsg-3),
 usrmerge (= 39),
 util-linux (= 2.39.3-6),
 xz-utils (= 5.4.5-0.3),
 zlib1g (= 1:1.3.dfsg-3+b1),
 zlib1g-dev (= 1:1.3.dfsg-3+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1706013141"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


stacks-dbgsym_2.66+dfsg-1_armel.deb
-----------------------------------

 new Debian package, version 2.0.
 size 26531528 bytes: control archive=1096 bytes.
     786 bytes,    12 lines      control
    1250 bytes,    12 lines      md5sums
 Package: stacks-dbgsym
 Source: stacks
 Version: 2.66+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 27173
 Depends: stacks (= 2.66+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for stacks
 Build-Ids: 17bb7f83f41917a5107679c446cc56c957493a5a 1c236305afb3b1f2d9772df3500a5cbb4bd18a08 3f35661420c638432941e1bb77a1de21c20db4ba 46bc5da685bd21caea443ba6f93cf6e0a1315563 585571557c2089f3b3d9819f058c3ba278c97cd8 6ba76081527f663860e03ba8be29649cab1a95a7 7c86fa7fdd009541b7a92dc76b6e50c3e43cc2d0 9edd14b0729fcc7a7b829f2572bff666583eadf3 ab8650a56eb566c2750b7aa65534bd02a2187599 c110e6f1448a5e6c8d87b6de516121cb8dfdc664 ec7d7c048e1e1d48b482c6ff48b08db25e37c917

drwxr-xr-x root/root         0 2024-01-23 12:32 ./
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/17/
-rw-r--r-- root/root   1631288 2024-01-23 12:32 ./usr/lib/debug/.build-id/17/bb7f83f41917a5107679c446cc56c957493a5a.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/1c/
-rw-r--r-- root/root   2037120 2024-01-23 12:32 ./usr/lib/debug/.build-id/1c/236305afb3b1f2d9772df3500a5cbb4bd18a08.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root   1893760 2024-01-23 12:32 ./usr/lib/debug/.build-id/3f/35661420c638432941e1bb77a1de21c20db4ba.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/46/
-rw-r--r-- root/root   5242612 2024-01-23 12:32 ./usr/lib/debug/.build-id/46/bc5da685bd21caea443ba6f93cf6e0a1315563.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/58/
-rw-r--r-- root/root    914940 2024-01-23 12:32 ./usr/lib/debug/.build-id/58/5571557c2089f3b3d9819f058c3ba278c97cd8.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root   1308328 2024-01-23 12:32 ./usr/lib/debug/.build-id/6b/a76081527f663860e03ba8be29649cab1a95a7.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root   1825832 2024-01-23 12:32 ./usr/lib/debug/.build-id/7c/86fa7fdd009541b7a92dc76b6e50c3e43cc2d0.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root   2280168 2024-01-23 12:32 ./usr/lib/debug/.build-id/9e/dd14b0729fcc7a7b829f2572bff666583eadf3.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root   4413808 2024-01-23 12:32 ./usr/lib/debug/.build-id/ab/8650a56eb566c2750b7aa65534bd02a2187599.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root   2214896 2024-01-23 12:32 ./usr/lib/debug/.build-id/c1/10e6f1448a5e6c8d87b6de516121cb8dfdc664.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.build-id/ec/
-rw-r--r-- root/root   2597700 2024-01-23 12:32 ./usr/lib/debug/.build-id/ec/7d7c048e1e1d48b482c6ff48b08db25e37c917.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/lib/debug/.dwz/arm-linux-gnueabi/
-rw-r--r-- root/root   1436296 2024-01-23 12:32 ./usr/lib/debug/.dwz/arm-linux-gnueabi/stacks.debug
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/share/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/share/doc/stacks-dbgsym -> stacks


stacks_2.66+dfsg-1_armel.deb
----------------------------

 new Debian package, version 2.0.
 size 1004620 bytes: control archive=1572 bytes.
     991 bytes,    20 lines      control
    1716 bytes,    24 lines      md5sums
 Package: stacks
 Version: 2.66+dfsg-1
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 5143
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libhts3 (>= 1.17), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), samtools, libdbi-perl, bsdextrautils, python3
 Recommends: libspreadsheet-writeexcel-perl, littler
 Suggests: gdb
 Provides: stacks-web
 Section: science
 Priority: optional
 Homepage: https://creskolab.uoregon.edu/stacks/
 Description: pipeline for building loci from short-read DNA sequences
  Stacks is a software pipeline for building loci from short-read sequences,
  such as those generated on the Illumina platform. Stacks was developed to work
  with restriction enzyme-based data, such as RAD-seq, for the purpose of
  building genetic maps and conducting population genomics and phylogeography.
  .
  Note that this package installs Stacks such that all commands must be run as:
  $ stacks <cmdname> <args>

drwxr-xr-x root/root         0 2024-01-23 12:32 ./
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/bin/
-rwxr-xr-x root/root       775 2024-01-19 16:09 ./usr/bin/stacks
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/libexec/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/cstacks -> ../../stacks/bin/cstacks
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/gstacks -> ../../stacks/bin/gstacks
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/populations -> ../../stacks/bin/populations
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ref_map -> ../../stacks/bin/ref_map
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/sstacks -> ../../stacks/bin/sstacks
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ustacks -> ../../stacks/bin/ustacks
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/libexec/stacks/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/libexec/stacks/bin/
-rwxr-xr-x root/root    322280 2024-01-23 12:32 ./usr/libexec/stacks/bin/clone_filter
-rwxr-xr-x root/root    416320 2024-01-23 12:32 ./usr/libexec/stacks/bin/cstacks
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/stacks/bin/denovo_map -> denovo_map.pl
-rwxr-xr-x root/root     32838 2024-01-23 12:32 ./usr/libexec/stacks/bin/denovo_map.pl
-rwxr-xr-x root/root    731400 2024-01-23 12:32 ./usr/libexec/stacks/bin/gstacks
-rwxr-xr-x root/root    244432 2024-01-23 12:32 ./usr/libexec/stacks/bin/kmer_filter
-rwxr-xr-x root/root    322136 2024-01-23 12:32 ./usr/libexec/stacks/bin/phasedstacks
-rwxr-xr-x root/root   1056924 2024-01-23 12:32 ./usr/libexec/stacks/bin/populations
-rwxr-xr-x root/root    467040 2024-01-23 12:32 ./usr/libexec/stacks/bin/process_radtags
-rwxr-xr-x root/root    330916 2024-01-23 12:32 ./usr/libexec/stacks/bin/process_shortreads
lrwxrwxrwx root/root         0 2024-01-23 12:32 ./usr/libexec/stacks/bin/ref_map -> ref_map.pl
-rwxr-xr-x root/root     15364 2024-01-23 12:32 ./usr/libexec/stacks/bin/ref_map.pl
-rwxr-xr-x root/root    379360 2024-01-23 12:32 ./usr/libexec/stacks/bin/sstacks
-rwxr-xr-x root/root      1040 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus
-rwxr-xr-x root/root      7316 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-dist-extract
-rwxr-xr-x root/root      1244 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-gdb
-rwxr-xr-x root/root      1773 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage
-rwxr-xr-x root/root     22320 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-integrate-alignments
-rwxr-xr-x root/root      3037 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-samtools-tview
-rwxr-xr-x root/root    399536 2024-01-23 12:32 ./usr/libexec/stacks/bin/tsv2bam
-rwxr-xr-x root/root    424944 2024-01-23 12:32 ./usr/libexec/stacks/bin/ustacks
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/share/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-23 12:32 ./usr/share/doc/stacks/
-rw-r--r-- root/root      1451 2024-01-19 16:09 ./usr/share/doc/stacks/README.Debian
-rw-r--r-- root/root      1348 2024-01-23 12:32 ./usr/share/doc/stacks/changelog.Debian.gz
-rw-r--r-- root/root     31698 2023-12-05 19:06 ./usr/share/doc/stacks/changelog.gz
-rw-r--r-- root/root      1730 2024-01-19 16:09 ./usr/share/doc/stacks/copyright


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1361 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1440 B]
Fetched 3416 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libreadline8
  libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl
  libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip readline-common t1utils unzip
Suggested packages:
  isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl
  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl
  libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc
  zip
Recommended packages:
  gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl
  liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl
  libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl
  libhttp-daemon-perl libmailtools-perl
The following NEW packages will be installed:
  ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libreadline8
  libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl
  libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip readline-common
  sbuild-build-depends-lintian-dummy:armel t1utils unzip
0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded.
Need to get 13.8 MB of archives.
After this operation, 51.9 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB]
Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB]
Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.4-2 [1426 kB]
Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB]
Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB]
Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB]
Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1+b1 [565 kB]
Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.0-1 [894 kB]
Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1+b1 [950 kB]
Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB]
Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b3 [66.9 kB]
Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB]
Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB]
Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB]
Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b2 [43.9 kB]
Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b2 [121 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.25-1 [91.9 kB]
Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1+b1 [99.0 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.61-1 [217 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b2 [36.3 kB]
Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB]
Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b2 [24.4 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b1 [128 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b2 [32.6 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b2 [98.1 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB]
Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b2 [24.3 kB]
Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b2 [29.3 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:65 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:66 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB]
Get:68 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:69 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:70 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:71 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:72 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B]
Get:73 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1 [338 kB]
Get:74 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB]
Get:75 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.12-1 [10.5 kB]
Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.76-1 [183 kB]
Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB]
Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB]
Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB]
Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB]
Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b4 [143 kB]
Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB]
Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB]
Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB]
Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b2 [17.5 kB]
Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b1 [11.4 kB]
Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b1 [42.2 kB]
Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b1 [99.2 kB]
Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b1 [102 kB]
Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b1 [57.5 kB]
Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1+b1 [27.1 kB]
Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b2 [24.7 kB]
Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b2 [8704 B]
Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b1 [13.0 kB]
Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b3 [174 kB]
Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b2 [72.7 kB]
Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b1 [20.3 kB]
Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB]
Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB]
Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1+b1 [34.2 kB]
Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB]
Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB]
Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB]
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Setting up libapt-pkg-perl (0.1.40+b3) ...
Setting up liblz1:amd64 (1.14-1) ...
Setting up libberkeleydb-perl:amd64 (0.64-2+b2) ...
Setting up plzip (1.11-1) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libunicode-utf8-perl (0.62-2+b1) ...
Setting up libmouse-perl (2.5.10-1+b4) ...
Setting up libdata-messagepack-perl (1.02-1+b2) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.46-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-1) ...
Setting up libsub-identify-perl (0.14-3+b1) ...
Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b1) ...
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libdevel-size-perl (0.83-2+b2) ...
Setting up unzip (6.0-28) ...
Setting up libsqlite3-0:amd64 (3.45.0-1) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.86+ds-1+b1) ...
Setting up libio-interactive-perl (1.025-1) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up perl-openssl-defaults:amd64 (7+b1) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libtime-moment-perl (0.44-2+b2) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libassuan0:amd64 (2.5.6-1) ...
Setting up libconfig-tiny-perl (2.30-1) ...
Setting up libsereal-encoder-perl (5.004+ds-1+b1) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004005-1) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b2) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libxs-parse-keyword-perl (0.39-1+b1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b1) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.65-1) ...
Setting up libvariable-magic-perl (0.63-1+b2) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b2) ...
Setting up libparams-util-perl (1.102-2+b2) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-1+b3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.27-1+b1) ...
Setting up libsyntax-keyword-try-perl (0.29-1+b1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl:amd64 (0.636-1+b1) ...
Setting up libpath-tiny-perl (0.144-1) ...
Setting up lzop (1.04-2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.4) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b2) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b2) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.1.4-2) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b2) ...
Setting up libperlio-gzip-perl (0.20-1+b2) ...
Setting up readline-common (8.2-3) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b1) ...
Setting up libmarkdown2:amd64 (2.2.7-2+b1) ...
Setting up liburi-perl (5.25-1) ...
Setting up iso-codes (4.16.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b2) ...
Setting up libnet-ssleay-perl:amd64 (1.94-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libreadline8:amd64 (8.2-3) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libtext-markdown-discount-perl (0.16-1+b1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-2) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libhtml-parser-perl:amd64 (3.81-1+b1) ...
Setting up gpgconf (2.2.40-1.1+b1) ...
Setting up libio-socket-ssl-perl (2.085-1) ...
Setting up gpg (2.2.40-1.1+b1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libhtml-form-perl (6.11-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b2) ...
Setting up libcgi-pm-perl (4.61-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.59-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-perl (6.76-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.17-1) ...
Setting up liblwp-protocol-https-perl (6.12-1) ...
Setting up lintian (2.116.3) ...
Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.37-14) ...
Processing triggers for man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
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+------------------------------------------------------------------------------+
| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 293648
Build-Time: 251
Distribution: unstable
Foreign Architectures: armel
Host Architecture: armel
Install-Time: 12
Job: stacks_2.66+dfsg-1
Lintian: pass
Machine Architecture: amd64
Package: stacks
Package-Time: 273
Source-Version: 2.66+dfsg-1
Space: 293648
Status: successful
Version: 2.66+dfsg-1
--------------------------------------------------------------------------------
Finished at 2024-01-28T23:27:19Z
Build needed 00:04:33, 293648k disk space