sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | stacks 2.66+dfsg-1 (s390x) Sat, 10 Feb 2024 15:41:13 +0000 | +==============================================================================+ Package: stacks Version: 2.66+dfsg-1 Source Version: 2.66+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-45aea963-c33d-41e4-b3bf-5b49b7bfa674' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-5BqgC0/resolver-1cqcb5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-02-10-0228.31-F-2024-02-10-0228.31.pdiff [13.1 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-02-10-0228.31-F-2024-02-10-0228.31.pdiff [95.7 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-02-10-0228.31-F-2024-02-10-0228.31.pdiff [13.1 kB] Get:6 http://localhost:3142/debian sid/main s390x Packages [9282 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-02-10-0228.31-F-2024-02-10-0228.31.pdiff [95.7 kB] Fetched 9716 kB in 2s (4643 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1141 kB of archives. After this operation, 21.5 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:2 http://localhost:3142/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:3 http://localhost:3142/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:4 http://localhost:3142/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1141 kB in 0s (86.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16272 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.3.0+dfsg-2) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16273 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.20.1-5+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-5+b1) over (1.20.1-5) ... Preparing to unpack .../libkrb5-3_1.20.1-5+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-5+b1) over (1.20.1-5) ... Preparing to unpack .../libkrb5support0_1.20.1-5+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-5+b1) over (1.20.1-5) ... Preparing to unpack .../libk5crypto3_1.20.1-5+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-5+b1) over (1.20.1-5) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Processing triggers for libc-bin (2.37-15) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/stacks.git Please use: git clone https://salsa.debian.org/med-team/stacks.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 353 kB of source archives. Get:1 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (dsc) [2041 B] Get:2 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (tar) [339 kB] Get:3 http://localhost:3142/debian sid/main stacks 2.66+dfsg-1 (diff) [12.1 kB] Fetched 353 kB in 0s (717 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/stacks-5BqgC0/stacks-2.66+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-5BqgC0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [779 B] Get:5 copy:/<>/apt_archive ./ Packages [822 B] Fetched 2210 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-14-base:s390x gcc-14-cross-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbam-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libhtscodecs2:s390x libicu72 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsparsehash-dev libssh2-1:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring5:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf samtools:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x pkgconf:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl cwltool:s390x Recommended packages: curl | wget | lynx ca-certificates:s390x libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x libgpm2:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-14-base:s390x gcc-14-cross-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbam-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts-dev:s390x libhts3:s390x libhtscodecs2:s390x libicu72 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libncurses6:s390x libnettle8:s390x libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsparsehash-dev libssh2-1:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtinfo6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring5:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf samtools:s390x sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 93.2 MB of archives. After this operation, 351 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.42-2 [2446 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu-base amd64 13.2.0-12cross1 [42.7 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-s390x-linux-gnu amd64 13.2.0-12cross1 [8425 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.37-12cross1 [1001 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 14-20240127-1cross1 [31.8 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 14-20240127-1cross1 [128 kB] Get:29 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 14-20240127-1cross1 [26.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 14-20240127-1cross1 [8212 B] Get:31 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 14-20240127-1cross1 [2554 kB] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 14-20240127-1cross1 [713 kB] Get:33 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 14-20240127-1cross1 [1055 kB] Get:34 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-s390x-cross all 13.2.0-12cross1 [843 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu amd64 13.2.0-12cross1 [16.2 MB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:13.2.0-7 [1444 B] Get:37 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 6.5.8-1cross1 [2010 kB] Get:38 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.37-12cross1 [1383 kB] Get:39 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-s390x-cross all 13.2.0-12cross1 [2233 kB] Get:40 http://localhost:3142/debian sid/main amd64 g++-13-s390x-linux-gnu amd64 13.2.0-12cross1 [9368 kB] Get:41 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:13.2.0-7 [1196 B] Get:42 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:43 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:44 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:51 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:52 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:54 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.10 [3480 B] Get:58 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.13 [85.0 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:62 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:65 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:66 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:67 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:68 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:69 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:70 http://localhost:3142/debian sid/main amd64 debhelper all 13.13 [889 kB] Get:71 http://localhost:3142/debian sid/main s390x gcc-11-base s390x 11.4.0-7 [40.3 kB] Get:72 http://localhost:3142/debian sid/main s390x gcc-14-base s390x 14-20240201-3 [42.3 kB] Get:73 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 14-20240201-3 [31.8 kB] Get:74 http://localhost:3142/debian sid/main s390x libc6 s390x 2.37-15 [2249 kB] Get:75 http://localhost:3142/debian sid/main s390x libasan6 s390x 11.4.0-7 [1928 kB] Get:76 http://localhost:3142/debian sid/main s390x libatomic1 s390x 14-20240201-3 [8548 B] Get:77 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.3.dfsg-3+b1 [86.1 kB] Get:78 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.36-4 [93.8 kB] Get:79 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.36-4 [122 kB] Get:80 http://localhost:3142/debian sid/main s390x libkrb5support0 s390x 1.20.1-5+b1 [33.5 kB] Get:81 http://localhost:3142/debian sid/main s390x libcom-err2 s390x 1.47.0-2+b1 [19.9 kB] Get:82 http://localhost:3142/debian sid/main s390x libk5crypto3 s390x 1.20.1-5+b1 [82.4 kB] Get:83 http://localhost:3142/debian sid/main s390x libkeyutils1 s390x 1.6.3-3 [8932 B] Get:84 http://localhost:3142/debian sid/main s390x libssl3 s390x 3.1.5-1 [1695 kB] Get:85 http://localhost:3142/debian sid/main s390x libkrb5-3 s390x 1.20.1-5+b1 [325 kB] Get:86 http://localhost:3142/debian sid/main s390x libgssapi-krb5-2 s390x 1.20.1-5+b1 [129 kB] Get:87 http://localhost:3142/debian sid/main s390x libtirpc3 s390x 1.3.4+ds-1 [79.1 kB] Get:88 http://localhost:3142/debian sid/main s390x libnsl2 s390x 1.3.0-3 [38.4 kB] Get:89 http://localhost:3142/debian sid/main s390x libtirpc-dev s390x 1.3.4+ds-1 [186 kB] Get:90 http://localhost:3142/debian sid/main s390x libnsl-dev s390x 1.3.0-3 [65.3 kB] Get:91 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.37-15 [1400 kB] Get:92 http://localhost:3142/debian sid/main s390x zlib1g-dev s390x 1:1.3.dfsg-3+b1 [917 kB] Get:93 http://localhost:3142/debian sid/main s390x libbam-dev s390x 0.1.19+dfsg-6 [112 kB] Get:94 http://localhost:3142/debian sid/main s390x libbrotli1 s390x 1.1.0-2+b3 [323 kB] Get:95 http://localhost:3142/debian sid/main s390x libbz2-1.0 s390x 1.0.8-5+b2 [42.1 kB] Get:96 http://localhost:3142/debian sid/main s390x libgmp10 s390x 2:6.3.0+dfsg-2+b1 [602 kB] Get:97 http://localhost:3142/debian sid/main s390x libnettle8 s390x 3.9.1-2 [312 kB] Get:98 http://localhost:3142/debian sid/main s390x libhogweed6 s390x 3.9.1-2 [329 kB] Get:99 http://localhost:3142/debian sid/main s390x libunistring5 s390x 1.1-2 [419 kB] Get:100 http://localhost:3142/debian sid/main s390x libidn2-0 s390x 2.3.7-2 [126 kB] Get:101 http://localhost:3142/debian sid/main s390x libffi8 s390x 3.4.4-2 [20.6 kB] Get:102 http://localhost:3142/debian sid/main s390x libp11-kit0 s390x 0.25.3-4 [426 kB] Get:103 http://localhost:3142/debian sid/main s390x libtasn1-6 s390x 4.19.0-3+b2 [47.9 kB] Get:104 http://localhost:3142/debian sid/main s390x libgnutls30 s390x 3.8.3-1 [1341 kB] Get:105 http://localhost:3142/debian sid/main s390x libdb5.3 s390x 5.3.28+dfsg2-4+b1 [665 kB] Get:106 http://localhost:3142/debian sid/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-4+b1 [19.3 kB] Get:107 http://localhost:3142/debian sid/main s390x libsasl2-2 s390x 2.1.28+dfsg1-4+b1 [56.7 kB] Get:108 http://localhost:3142/debian sid/main s390x libldap-2.5-0 s390x 2.5.13+dfsg-5+b3 [179 kB] Get:109 http://localhost:3142/debian sid/main s390x libnghttp2-14 s390x 1.59.0-1 [71.8 kB] Get:110 http://localhost:3142/debian sid/main s390x libpsl5 s390x 0.21.2-1+b1 [59.1 kB] Get:111 http://localhost:3142/debian sid/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:112 http://localhost:3142/debian sid/main s390x libssh2-1 s390x 1.11.0-4 [209 kB] Get:113 http://localhost:3142/debian sid/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [319 kB] Get:114 http://localhost:3142/debian sid/main s390x libcurl3-gnutls s390x 8.6.0-2 [411 kB] Get:115 http://localhost:3142/debian sid/main s390x libcurl4-gnutls-dev s390x 8.6.0-2 [520 kB] Get:116 http://localhost:3142/debian sid/main s390x libdeflate0 s390x 1.19-1 [41.4 kB] Get:117 http://localhost:3142/debian sid/main s390x libdeflate-dev s390x 1.19-1 [49.0 kB] Get:118 http://localhost:3142/debian sid/main s390x libgomp1 s390x 14-20240201-3 [131 kB] Get:119 http://localhost:3142/debian sid/main s390x libitm1 s390x 14-20240201-3 [26.7 kB] Get:120 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 14-20240201-3 [763 kB] Get:121 http://localhost:3142/debian sid/main s390x libubsan1 s390x 14-20240201-3 [1055 kB] Get:122 http://localhost:3142/debian sid/main s390x libgcc-11-dev s390x 11.4.0-7 [692 kB] Get:123 http://localhost:3142/debian sid/main s390x libhtscodecs2 s390x 1.6.0-1 [80.5 kB] Get:124 http://localhost:3142/debian sid/main s390x liblzma5 s390x 5.4.5-0.3 [241 kB] Get:125 http://localhost:3142/debian sid/main s390x libhts3 s390x 1.18+ds-1 [444 kB] Get:126 http://localhost:3142/debian sid/main s390x liblzma-dev s390x 5.4.5-0.3 [294 kB] Get:127 http://localhost:3142/debian sid/main s390x libhts-dev s390x 1.18+ds-1 [1621 kB] Get:128 http://localhost:3142/debian sid/main s390x libtinfo6 s390x 6.4+20240113-1 [344 kB] Get:129 http://localhost:3142/debian sid/main s390x libncurses6 s390x 6.4+20240113-1 [106 kB] Get:130 http://localhost:3142/debian sid/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get:131 http://localhost:3142/debian sid/main s390x libstdc++-11-dev s390x 11.4.0-7 [1944 kB] Get:132 http://localhost:3142/debian sid/main s390x samtools s390x 1.19-1 [652 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.2 MB in 1s (184 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16277 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-3_amd64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.39.3-6_amd64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.7-1+b2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.12.0-3_amd64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. 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Preparing to unpack .../018-gcc-13-s390x-linux-gnu-base_13.2.0-12cross1_amd64.deb ... Unpacking gcc-13-s390x-linux-gnu-base:amd64 (13.2.0-12cross1) ... Selecting previously unselected package cpp-13-s390x-linux-gnu. Preparing to unpack .../019-cpp-13-s390x-linux-gnu_13.2.0-12cross1_amd64.deb ... Unpacking cpp-13-s390x-linux-gnu (13.2.0-12cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../020-cpp-s390x-linux-gnu_4%3a13.2.0-7_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package cross-config. Preparing to unpack .../021-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../022-gcc-13-cross-base_13.2.0-12cross1_all.deb ... Unpacking gcc-13-cross-base (13.2.0-12cross1) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../023-gcc-14-cross-base_14-20240127-1cross1_all.deb ... Unpacking gcc-14-cross-base (14-20240127-1cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../024-libc6-s390x-cross_2.37-12cross1_all.deb ... Unpacking libc6-s390x-cross (2.37-12cross1) ... Selecting previously unselected package libgcc-s1-s390x-cross. Preparing to unpack .../025-libgcc-s1-s390x-cross_14-20240127-1cross1_all.deb ... Unpacking libgcc-s1-s390x-cross (14-20240127-1cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../026-libgomp1-s390x-cross_14-20240127-1cross1_all.deb ... Unpacking libgomp1-s390x-cross (14-20240127-1cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../027-libitm1-s390x-cross_14-20240127-1cross1_all.deb ... Unpacking libitm1-s390x-cross (14-20240127-1cross1) ... Selecting previously unselected package libatomic1-s390x-cross. 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Selecting previously unselected package gcc-13-s390x-linux-gnu. Preparing to unpack .../033-gcc-13-s390x-linux-gnu_13.2.0-12cross1_amd64.deb ... Unpacking gcc-13-s390x-linux-gnu (13.2.0-12cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../034-gcc-s390x-linux-gnu_4%3a13.2.0-7_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../035-linux-libc-dev-s390x-cross_6.5.8-1cross1_all.deb ... Unpacking linux-libc-dev-s390x-cross (6.5.8-1cross1) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../036-libc6-dev-s390x-cross_2.37-12cross1_all.deb ... Unpacking libc6-dev-s390x-cross (2.37-12cross1) ... Selecting previously unselected package libstdc++-13-dev-s390x-cross. Preparing to unpack .../037-libstdc++-13-dev-s390x-cross_13.2.0-12cross1_all.deb ... Unpacking libstdc++-13-dev-s390x-cross (13.2.0-12cross1) ... Selecting previously unselected package g++-13-s390x-linux-gnu. Preparing to unpack .../038-g++-13-s390x-linux-gnu_13.2.0-12cross1_amd64.deb ... Unpacking g++-13-s390x-linux-gnu (13.2.0-12cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../039-g++-s390x-linux-gnu_4%3a13.2.0-7_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../040-libconfig-inifiles-perl_3.000003-2_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../042-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../043-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../044-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../045-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../046-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../047-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... Selecting previously unselected package libxml-simple-perl. 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Selecting previously unselected package dpkg-cross. Preparing to unpack .../054-dpkg-cross_2.6.20_all.deb ... Unpacking dpkg-cross (2.6.20) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../055-crossbuild-essential-s390x_12.10_all.deb ... Unpacking crossbuild-essential-s390x (12.10) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../056-libdebhelper-perl_13.13_all.deb ... Unpacking libdebhelper-perl (13.13) ... Selecting previously unselected package libtool. Preparing to unpack .../057-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../058-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../059-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../060-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../061-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../062-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../063-libelf1_0.190-1+b1_amd64.deb ... Unpacking libelf1:amd64 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../064-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../065-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../066-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../067-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../068-debhelper_13.13_all.deb ... Unpacking debhelper (13.13) ... Selecting previously unselected package gcc-11-base:s390x. Preparing to unpack .../069-gcc-11-base_11.4.0-7_s390x.deb ... Unpacking gcc-11-base:s390x (11.4.0-7) ... Selecting previously unselected package gcc-14-base:s390x. Preparing to unpack .../070-gcc-14-base_14-20240201-3_s390x.deb ... Unpacking gcc-14-base:s390x (14-20240201-3) ... Selecting previously unselected package libgcc-s1:s390x. Preparing to unpack .../071-libgcc-s1_14-20240201-3_s390x.deb ... Unpacking libgcc-s1:s390x (14-20240201-3) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../072-libc6_2.37-15_s390x.deb ... Unpacking libc6:s390x (2.37-15) ... Selecting previously unselected package libasan6:s390x. Preparing to unpack .../073-libasan6_11.4.0-7_s390x.deb ... Unpacking libasan6:s390x (11.4.0-7) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../074-libatomic1_14-20240201-3_s390x.deb ... Unpacking libatomic1:s390x (14-20240201-3) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../075-zlib1g_1%3a1.3.dfsg-3+b1_s390x.deb ... Unpacking zlib1g:s390x (1:1.3.dfsg-3+b1) ... Selecting previously unselected package libcrypt1:s390x. Preparing to unpack .../076-libcrypt1_1%3a4.4.36-4_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.36-4) ... Selecting previously unselected package libcrypt-dev:s390x. Preparing to unpack .../077-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 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Selecting previously unselected package libtasn1-6:s390x. Preparing to unpack .../101-libtasn1-6_4.19.0-3+b2_s390x.deb ... Unpacking libtasn1-6:s390x (4.19.0-3+b2) ... Selecting previously unselected package libgnutls30:s390x. Preparing to unpack .../102-libgnutls30_3.8.3-1_s390x.deb ... Unpacking libgnutls30:s390x (3.8.3-1) ... Selecting previously unselected package libdb5.3:s390x. Preparing to unpack .../103-libdb5.3_5.3.28+dfsg2-4+b1_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../104-libsasl2-modules-db_2.1.28+dfsg1-4+b1_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../105-libsasl2-2_2.1.28+dfsg1-4+b1_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:s390x. 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Setting up libc6-s390x-cross (2.37-12cross1) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14-20240127-1cross1) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (6.5.8-1cross1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-s390x-linux-gnu-base:amd64 (13.2.0-12cross1) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up autopoint (0.21-14) ... Setting up libgcc-s1-s390x-cross (14-20240127-1cross1) ... Setting up autoconf (2.71-3) ... Setting up libitm1-s390x-cross (14-20240127-1cross1) ... Setting up sensible-utils (0.0.22) ... Setting up libc6-dev-s390x-cross (2.37-12cross1) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libgomp1-s390x-cross (14-20240127-1cross1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libstdc++6-s390x-cross (14-20240127-1cross1) ... Setting up libatomic1-s390x-cross (14-20240127-1cross1) ... Setting up libasan8-s390x-cross (14-20240127-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-13-s390x-linux-gnu (13.2.0-12cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libubsan1-s390x-cross (14-20240127-1cross1) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-s390x-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-s390x-cross (13.2.0-12cross1) ... Setting up debhelper (13.13) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-12cross1) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-7) ... Setting up g++-13-s390x-linux-gnu (13.2.0-12cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-s390x-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-s390x (12.10) ... Setting up libgcc-s1:s390x (14-20240201-3) ... Setting up libc6:s390x (2.37-15) ... Setting up libffi8:s390x (3.4.4-2) ... Setting up libtasn1-6:s390x (4.19.0-3+b2) ... Setting up libbz2-1.0:s390x (1.0.8-5+b2) ... Setting up libdb5.3:s390x (5.3.28+dfsg2-4+b1) ... Setting up libstdc++6:s390x (14-20240201-3) ... Setting up libitm1:s390x (14-20240201-3) ... Setting up libtinfo6:s390x (6.4+20240113-1) ... Setting up libhtscodecs2:s390x (1.6.0-1) ... Setting up libzstd1:s390x (1.5.5+dfsg2-2) ... Setting up libkeyutils1:s390x (1.6.3-3) ... Setting up liblzma5:s390x (5.4.5-0.3) ... Setting up libbrotli1:s390x (1.1.0-2+b3) ... Setting up libssl3:s390x (3.1.5-1) ... Setting up libnghttp2-14:s390x (1.59.0-1) ... Setting up libdeflate0:s390x (1.19-1) ... Setting up zlib1g:s390x (1:1.3.dfsg-3+b1) ... Setting up libcrypt1:s390x (1:4.4.36-4) ... Setting up libcom-err2:s390x (1.47.0-2+b1) ... Setting up libgomp1:s390x (14-20240201-3) ... Setting up libasan6:s390x (11.4.0-7) ... Setting up libkrb5support0:s390x (1.20.1-5+b1) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-4+b1) ... Setting up libnettle8:s390x (3.9.1-2) ... Setting up libgmp10:s390x (2:6.3.0+dfsg-2+b1) ... Setting up libncurses6:s390x (6.4+20240113-1) ... Setting up libp11-kit0:s390x (0.25.3-4) ... Setting up libunistring5:s390x (1.1-2) ... Setting up libatomic1:s390x (14-20240201-3) ... Setting up libk5crypto3:s390x (1.20.1-5+b1) ... Setting up libsasl2-2:s390x (2.1.28+dfsg1-4+b1) ... Setting up liblzma-dev:s390x (5.4.5-0.3) ... Setting up libubsan1:s390x (14-20240201-3) ... Setting up libgcc-11-dev:s390x (11.4.0-7) ... Setting up libcrypt-dev:s390x (1:4.4.36-4) ... Setting up libssh2-1:s390x (1.11.0-4) ... Setting up libkrb5-3:s390x (1.20.1-5+b1) ... Setting up libdeflate-dev:s390x (1.19-1) ... Setting up libhogweed6:s390x (3.9.1-2) ... Setting up libidn2-0:s390x (2.3.7-2) ... Setting up libgnutls30:s390x (3.8.3-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.20.1-5+b1) ... Setting up libtirpc3:s390x (1.3.4+ds-1) ... Setting up libpsl5:s390x (0.21.2-1+b1) ... Setting up libldap-2.5-0:s390x (2.5.13+dfsg-5+b3) ... Setting up libtirpc-dev:s390x (1.3.4+ds-1) ... Setting up libnsl2:s390x (1.3.0-3) ... Setting up libcurl3-gnutls:s390x (8.6.0-2) ... Setting up libcurl4-gnutls-dev:s390x (8.6.0-2) ... Setting up libnsl-dev:s390x (1.3.0-3) ... Setting up libc6-dev:s390x (2.37-15) ... Setting up libhts3:s390x (1.18+ds-1) ... Setting up samtools:s390x (1.19-1) ... Setting up libstdc++-11-dev:s390x (11.4.0-7) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg-3+b1) ... Setting up libhts-dev:s390x (1.18+ds-1) ... Setting up libbam-dev:s390x (0.1.19+dfsg-6) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-15) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-2 dpkg-dev_1.22.4 g++-11_11.4.0-7 g++-13_13.2.0-13 gcc-11_11.4.0-7 gcc-13_13.2.0-13 libc6-dev_2.37-15 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-13 libstdc++-13-dev-s390x-cross_13.2.0-12cross1 libstdc++6_14-20240201-3 libstdc++6-s390x-cross_14-20240127-1cross1 linux-libc-dev_6.6.15-2 Package versions: adduser_3.137 apt_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-2 binutils-common_2.42-2 binutils-s390x-linux-gnu_2.42-2 binutils-x86-64-linux-gnu_2.42-2 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-7 cpp-11_11.4.0-7 cpp-13_13.2.0-13 cpp-13-s390x-linux-gnu_13.2.0-12cross1 cpp-13-x86-64-linux-gnu_13.2.0-13 cpp-s390x-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-s390x_12.10 dash_0.5.12-6 debconf_1.5.85 debhelper_13.13 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.4 dpkg-cross_2.6.20 dpkg-dev_1.22.4 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.33-1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-7 g++-11_11.4.0-7 g++-13_13.2.0-13 g++-13-s390x-linux-gnu_13.2.0-12cross1 g++-13-x86-64-linux-gnu_13.2.0-13 g++-s390x-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-14 gcc-13_13.2.0-13 gcc-13-base_13.2.0-13 gcc-13-cross-base_13.2.0-12cross1 gcc-13-s390x-linux-gnu_13.2.0-12cross1 gcc-13-s390x-linux-gnu-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-13 gcc-14-base_14-20240201-3 gcc-14-cross-base_14-20240127-1cross1 gcc-9-base_9.5.0-5 gcc-s390x-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0_2.7.10 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_14-20240201-3 libasan8-s390x-cross_14-20240127-1cross1 libatomic1_14-20240201-3 libatomic1-s390x-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbam-dev_0.1.19+dfsg-6 libbinutils_2.42-2 libblkid1_2.39.3-6 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-15 libc-dev-bin_2.37-15 libc6_2.37-15 libc6-dev_2.37-15 libc6-dev-s390x-cross_2.37-12cross1 libc6-s390x-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240201-3 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-2 libctf0_2.42-2 libcurl3-gnutls_8.6.0-2 libcurl4-gnutls-dev_8.6.0-2 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.13 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.19-1 libdeflate0_1.19-1 libdpkg-perl_1.22.4 libelf1_0.190-1+b1 libext2fs2_1.47.0-2+b1 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-13 libgcc-13-dev-s390x-cross_13.2.0-12cross1 libgcc-s1_14-20240201-3 libgcc-s1-s390x-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5+b1 libgdbm6_1.23-5+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30_3.8.3-1 libgomp1_14-20240201-3 libgomp1-s390x-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-2 libgssapi-krb5-2_1.20.1-5+b1 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libhwasan0_14-20240201-3 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240201-3 libitm1-s390x-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5+b1 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-5+b1 libkrb5support0_1.20.1-5+b1 libldap-2.5-0_2.5.13+dfsg-5+b3 liblocale-gettext-perl_1.07-6+b1 liblsan0_14-20240201-3 liblz4-1_1.9.4-1+b2 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libncurses6_6.4+20240113-1 libnettle8_3.9.1-2 libnghttp2-14_1.59.0-1 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1+b2 libpsl5_0.21.2-1+b1 libquadmath0_14-20240201-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4+b1 libsasl2-modules-db_2.1.28+dfsg1-4+b1 libseccomp2_2.5.5-1 libselinux1_3.5-2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.42-2 libsmartcols1_2.39.3-6 libsparsehash-dev_2.0.3-2 libss2_1.47.0-2+b1 libssh2-1_1.11.0-4 libssl3_3.1.5-1 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-13 libstdc++-13-dev-s390x-cross_13.2.0-12cross1 libstdc++6_14-20240201-3 libstdc++6-s390x-cross_14-20240127-1cross1 libsub-override-perl_0.10-1 libsystemd0_255.3-2 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_14-20240201-3 libubsan1_14-20240201-3 libubsan1-s390x-cross_14-20240127-1cross1 libuchardet0_0.0.8-1 libudev1_255.3-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.15-2 linux-libc-dev-s390x-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2024a-1 ucf_3.0043+nmu1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3+b1 zlib1g-dev_1:1.3.dfsg-3+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: stacks Binary: stacks Architecture: any Version: 2.66+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://creskolab.uoregon.edu/stacks/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Package-List: stacks deb science optional arch=any Checksums-Sha1: 385fa639bf9e6404984e3f92390b91f12f70477d 339220 stacks_2.66+dfsg.orig.tar.xz 15689298d93b191899eb8595721abc3532bb2585 12128 stacks_2.66+dfsg-1.debian.tar.xz Checksums-Sha256: ebfe03f3ff69f9e398e891ae055c75d09f0f5e46a4094be5b75268eae410cf95 339220 stacks_2.66+dfsg.orig.tar.xz 10cf0e2485079286ec96d0d3a256c8f89a42670b9d57d932d98c03bac4140f65 12128 stacks_2.66+dfsg-1.debian.tar.xz Files: ad4aa860ad9e955b5add40699f74ee1d 339220 stacks_2.66+dfsg.orig.tar.xz 5f9ede170e0058c49fe7bbf2193676ae 12128 stacks_2.66+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEESjHbWh7kCWyHOZiAkDZJKUwz+bcFAmWvsxUACgkQkDZJKUwz +bec7A/+LNCmJ2yVljOnuonq0j4O5qYS8bjJdwFT0F3lc7oKHQkr/nXar4SVrcfZ iMCgB/4H+9sNKTgOV4GupFmhoBPOhN95aizPqod3zulcyNRDYFZOE+ei1y8RpHHI D6fXMzx3ewQtWO9RyIRWJQqzqZR3fie3Y3becYkYS8OQ86y6yq9LA2wICf6u1Z7s 586SMUSSpbgKIH8+jaJKwy0XC2yM1njJNwIOX95ws2xNdObTtjNqmFNipj4wQqyj AiYQ1+X6vnnCkimIh/GN5lnFCYEdsUC9VH2Y6M+OMR2IoVC3RL/l4PmO5JIc3kNW leFbyes3ZYX6MkOg0jPKuEr1NGEEHGvlWyYyWFjAVbgnbdJ3qKOiaUSGbkaErs+s 5ypyXKH3/HNDRL7dwbevO/Z5FRCD7e7WfiSzEzrhrJvXgMipTcPLA9Xi7e9c3Go3 9U59Txmw70+5JWHxcD6ws5L8pvmCT96OvF4mL07flaDxNBSXlvasuBCcRpsXr6QB 7PkVruQqmCCrkxR6DX+zHjiDp8H5PiEdWmDl+54L0XVxuspunQORcr+gmwJ5XeGM tdP4mSoW5xhFlSnpyTxEuQVTdAo98KW9iwOHsFXRLnz4JJ+it+HXL5+RdFfLmZZk EI2TuFY64YFZrfUchQW/9Oy2xBjuktc9w239bzJaTFjFAjBCTvs= =kWCv -----END PGP SIGNATURE----- gpgv: Signature made Tue Jan 23 12:37:41 2024 UTC gpgv: using RSA key 4A31DB5A1EE4096C87399880903649294C33F9B7 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./stacks_2.66+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting stacks in /<> dpkg-source: info: unpacking stacks_2.66+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.66+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying RisR.patch dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying fix_spelling_errors.patch dpkg-source: info: applying change_program_exit_to_success.patch dpkg-source: info: applying offer_help_option_for_stacks_gdb.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.vqTwpX74TX/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-45aea963-c33d-41e4-b3bf-5b49b7bfa674 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.66+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:28: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:28: the top level configure.ac:20: installing 'config/ar-lib' configure.ac:15: installing 'config/compile' configure.ac:42: installing 'config/config.guess' configure.ac:42: installing 'config/config.sub' configure.ac:7: installing 'config/install-sh' configure.ac:7: installing 'config/missing' Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking for s390x-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking whether s390x-linux-gnu-g++ supports C++11 features by default... yes checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking the archiver (s390x-linux-gnu-ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for s390x-linux-gnu-gcc option to support OpenMP... -fopenmp checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... no checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... configure: WARNING: Requires g++ 4.9.0 or greater. no checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks.o src/ustacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/aln_utils.o src/aln_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/BamI.o src/BamI.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/catalog_utils.o src/catalog_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cmb.o src/cmb.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/constants.o src/constants.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNANSeq.o src/DNANSeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq4.o src/DNASeq4.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/DNASeq.o src/DNASeq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gzFasta.o src/gzFasta.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/input.o src/input.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmers.o src/kmers.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/locus.o src/locus.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/log_utils.o src/log_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/MetaPopInfo.o src/MetaPopInfo.cc src/MetaPopInfo.cc: In member function ‘void MetaPopInfo::fill_pop_indexes(std::map >&) const’: src/MetaPopInfo.cc:427:30: warning: narrowing conversion of ‘i’ from ‘std::size_t’ {aka ‘long unsigned int’} to ‘int’ [-Wnarrowing] 427 | pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} ); | ^ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/models.o src/models.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mstack.o src/mstack.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mst.o src/mst.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/nucleotides.o src/nucleotides.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/renz.o src/renz.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Seq.o src/Seq.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sql_utilities.o src/sql_utilities.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/stacks.o src/stacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/utils.o src/utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Vcf.o src/Vcf.cc rm -f libcore.a s390x-linux-gnu-ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libcore.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks.o src/cstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks.o src/sstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags.o src/process_radtags.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clean.o src/clean.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/file_io.o src/file_io.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/write.o src/write.cc rm -f libclean.a s390x-linux-gnu-ar cru libclean.a src/clean.o src/file_io.o src/write.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libclean.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads.o src/process_shortreads.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter.o src/kmer_filter.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter.o src/clone_filter.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations.o src/populations.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/bootstrap.o src/bootstrap.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/export_formats.o src/export_formats.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mapping_utils.o src/mapping_utils.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/PopSum.o src/PopSum.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Hwp.o src/Hwp.cc rm -f libpop.a s390x-linux-gnu-ar cru libpop.a src/bootstrap.o src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-ranlib libpop.a s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks.o src/phasedstacks.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tsv2bam.o src/tsv2bam.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gstacks.o src/gstacks.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/debruijn.o src/debruijn.cc s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/SuffixTree.o src/SuffixTree.cc s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.66\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/debian/stacks/usr/bin' /usr/bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<>/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>' sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/denovo_map.pl > /<>/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/debian/stacks/usr/bin/denovo_map.pl.subst /<>/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/ref_map.pl > /<>/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/debian/stacks/usr/bin/ref_map.pl.subst /<>/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.66,' /<>/debian/stacks/usr/bin/stacks-integrate-alignments sed -i.bkp -e 's,_VERSION_,2.66,' /<>/debian/stacks/usr/bin/stacks-samtools-tview rm -f /<>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp rm -f /<>/debian/stacks/usr/bin/stacks-samtools-tview.bkp chmod +x /<>/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/stacks/usr/libexec/stacks mv debian/stacks/usr/bin debian/stacks/usr/libexec/stacks cd debian/stacks/usr/libexec/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link mkdir -p debian/stacks/usr/libexec/debian-med/bin cd debian/stacks/usr/libexec/debian-med/bin && \ for f in `ls /<>/debian/stacks/usr/libexec/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'stacks' in '../stacks_2.66+dfsg-1_s390x.deb'. dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_2.66+dfsg-1_s390x.deb'. dpkg-genbuildinfo --build=any -O../stacks_2.66+dfsg-1_s390x.buildinfo dpkg-genchanges --build=any -O../stacks_2.66+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-10T15:45:47Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.66+dfsg-1_s390x.changes: --------------------------------- Format: 1.8 Date: Tue, 23 Jan 2024 19:32:21 +0700 Source: stacks Binary: stacks stacks-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.66+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.66+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * d/patches: Refresh patches (change_program_exit_to_success.patch, fix_spelling_errors.patch, script-exe-paths) Checksums-Sha1: d28208bbca99a7dbbd812a4c5fcbe28381d5c128 27213684 stacks-dbgsym_2.66+dfsg-1_s390x.deb 6cba0298bf2bdd50609cebd43c8e131a1da7f688 6475 stacks_2.66+dfsg-1_s390x.buildinfo d7462f8669fc293b764bf1e917f243375f2452d3 1131760 stacks_2.66+dfsg-1_s390x.deb Checksums-Sha256: 6b59fab7d38f74ac2c12c4cd0f7468199f7aba99be29869c65f07a91ee49f9a6 27213684 stacks-dbgsym_2.66+dfsg-1_s390x.deb a60a595e258f8d681c814d82b299d9f8153da0274e772d3bf1f6c173d1958c62 6475 stacks_2.66+dfsg-1_s390x.buildinfo 927871886457329a4b295dbb30dafec31a82414048621bd46d69cb8585d62627 1131760 stacks_2.66+dfsg-1_s390x.deb Files: 249573fb4f91e411b9f911614b1b80e1 27213684 debug optional stacks-dbgsym_2.66+dfsg-1_s390x.deb 6ecb10c6940e189d1e52c083ee84b587 6475 science optional stacks_2.66+dfsg-1_s390x.buildinfo 71b16b9fa7dc96495c3729e337c09bcf 1131760 science optional stacks_2.66+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks stacks-dbgsym Architecture: s390x Version: 2.66+dfsg-1 Checksums-Md5: 249573fb4f91e411b9f911614b1b80e1 27213684 stacks-dbgsym_2.66+dfsg-1_s390x.deb 71b16b9fa7dc96495c3729e337c09bcf 1131760 stacks_2.66+dfsg-1_s390x.deb Checksums-Sha1: d28208bbca99a7dbbd812a4c5fcbe28381d5c128 27213684 stacks-dbgsym_2.66+dfsg-1_s390x.deb d7462f8669fc293b764bf1e917f243375f2452d3 1131760 stacks_2.66+dfsg-1_s390x.deb Checksums-Sha256: 6b59fab7d38f74ac2c12c4cd0f7468199f7aba99be29869c65f07a91ee49f9a6 27213684 stacks-dbgsym_2.66+dfsg-1_s390x.deb 927871886457329a4b295dbb30dafec31a82414048621bd46d69cb8585d62627 1131760 stacks_2.66+dfsg-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 10 Feb 2024 15:45:46 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-2), binutils-common (= 2.42-2), binutils-x86-64-linux-gnu (= 2.42-2), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3+b1), cpp (= 4:13.2.0-7), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-13), cpp-13-x86-64-linux-gnu (= 13.2.0-13), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.85), debhelper (= 13.13), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.4), dpkg-dev (= 1.22.4), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-13), g++-13-x86-64-linux-gnu (= 13.2.0-13), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-13), gcc-13-base (= 13.2.0-13), gcc-13-x86-64-linux-gnu (= 13.2.0-13), gcc-14-base (= 14-20240201-3), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 14-20240201-3), libatomic1 (= 14-20240201-3), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2), libaudit1 (= 1:3.1.2-2), libbam-dev (= 0.1.19+dfsg-6), libbinutils (= 2.42-2), libblkid1 (= 2.39.3-6), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-15), libc-dev-bin (= 2.37-15), libc6 (= 2.37-15), libc6-dev (= 2.37-15), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240201-3), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-2), libctf0 (= 2.42-2), libcurl3-gnutls (= 8.6.0-2), libcurl4-gnutls-dev (= 8.6.0-2), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.13), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.4), libelf1 (= 0.190-1+b1), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-13), libgcc-s1 (= 14-20240201-3), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5+b1), libgdbm6 (= 1.23-5+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30 (= 3.8.3-1), libgomp1 (= 14-20240201-3), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-2), libgssapi-krb5-2 (= 1.20.1-5+b1), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 14-20240201-3), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240201-3), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5+b1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-5+b1), libkrb5support0 (= 1.20.1-5+b1), libldap-2.5-0 (= 2.5.13+dfsg-5+b3), liblsan0 (= 14-20240201-3), liblz4-1 (= 1.9.4-1+b2), liblzma-dev (= 5.4.5-0.3), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libncurses6 (= 6.4+20240113-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.59.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1+b2), libpsl5 (= 0.21.2-1+b1), libquadmath0 (= 14-20240201-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-4+b1), libsasl2-modules-db (= 2.1.28+dfsg1-4+b1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2), libsframe1 (= 2.42-2), libsmartcols1 (= 2.39.3-6), libsparsehash-dev (= 2.0.3-2), libssh2-1 (= 1.11.0-4), libssl3 (= 3.1.5-1), libstdc++-13-dev (= 13.2.0-13), libstdc++6 (= 14-20240201-3), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.3-2), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 14-20240201-3), libubsan1 (= 14-20240201-3), libuchardet0 (= 0.0.8-1), libudev1 (= 255.3-2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.15-2), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), samtools (= 1.19-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3+b1), zlib1g-dev (= 1:1.3.dfsg-3+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1706013141" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ stacks-dbgsym_2.66+dfsg-1_s390x.deb ----------------------------------- new Debian package, version 2.0. size 27213684 bytes: control archive=1096 bytes. 786 bytes, 12 lines control 1248 bytes, 12 lines md5sums Package: stacks-dbgsym Source: stacks Version: 2.66+dfsg-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 27677 Depends: stacks (= 2.66+dfsg-1) Section: debug Priority: optional Description: debug symbols for stacks Build-Ids: 0e48ffe121f592ced8c8b18f7d38931d80893272 255230b05c3ab83962a0dec67c50699c6790c78d 3075de6c632f446caf790cbebfeb46f27ecf0bbe 4c53a53fe5e866cfc54885300507d7c8c3956815 4c7ad500931c95db7b41a4e1ceca11e0792eabd7 4eda659eefe2f8d9896a515737819ffcd9f148f2 7102cb5654279ca9083fa705a8d789792ff9537c 8a83c28b8e3a2ea68e656571ff9f1931a850622d abed14c3401a8293c6c60eccc5182c9b8b125042 bb1e4e181c6caae8748e55bca2a3ad01f3e07eb5 f5275d9d12642594c686e48c6b2b0201f5b768a7 drwxr-xr-x root/root 0 2024-01-23 12:32 ./ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/0e/ -rw-r--r-- root/root 1317704 2024-01-23 12:32 ./usr/lib/debug/.build-id/0e/48ffe121f592ced8c8b18f7d38931d80893272.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/25/ -rw-r--r-- root/root 1673008 2024-01-23 12:32 ./usr/lib/debug/.build-id/25/5230b05c3ab83962a0dec67c50699c6790c78d.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/30/ -rw-r--r-- root/root 2352888 2024-01-23 12:32 ./usr/lib/debug/.build-id/30/75de6c632f446caf790cbebfeb46f27ecf0bbe.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 942376 2024-01-23 12:32 ./usr/lib/debug/.build-id/4c/53a53fe5e866cfc54885300507d7c8c3956815.debug -rw-r--r-- root/root 2259976 2024-01-23 12:32 ./usr/lib/debug/.build-id/4c/7ad500931c95db7b41a4e1ceca11e0792eabd7.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/4e/ -rw-r--r-- root/root 5253072 2024-01-23 12:32 ./usr/lib/debug/.build-id/4e/da659eefe2f8d9896a515737819ffcd9f148f2.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/71/ -rw-r--r-- root/root 1935720 2024-01-23 12:32 ./usr/lib/debug/.build-id/71/02cb5654279ca9083fa705a8d789792ff9537c.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 2083296 2024-01-23 12:32 ./usr/lib/debug/.build-id/8a/83c28b8e3a2ea68e656571ff9f1931a850622d.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/ab/ -rw-r--r-- root/root 2682280 2024-01-23 12:32 ./usr/lib/debug/.build-id/ab/ed14c3401a8293c6c60eccc5182c9b8b125042.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/bb/ -rw-r--r-- root/root 1901800 2024-01-23 12:32 ./usr/lib/debug/.build-id/bb/1e4e181c6caae8748e55bca2a3ad01f3e07eb5.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 4479120 2024-01-23 12:32 ./usr/lib/debug/.build-id/f5/275d9d12642594c686e48c6b2b0201f5b768a7.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 1432248 2024-01-23 12:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/stacks.debug drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/share/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/share/doc/stacks-dbgsym -> stacks stacks_2.66+dfsg-1_s390x.deb ---------------------------- new Debian package, version 2.0. size 1131760 bytes: control archive=1572 bytes. 991 bytes, 20 lines control 1716 bytes, 24 lines md5sums Package: stacks Version: 2.66+dfsg-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 6048 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.17), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), samtools, libdbi-perl, bsdextrautils, python3 Recommends: libspreadsheet-writeexcel-perl, littler Suggests: gdb Provides: stacks-web Section: science Priority: optional Homepage: https://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks drwxr-xr-x root/root 0 2024-01-23 12:32 ./ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/bin/ -rwxr-xr-x root/root 775 2024-01-19 16:09 ./usr/bin/stacks drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/libexec/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/libexec/stacks/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/libexec/stacks/bin/ -rwxr-xr-x root/root 381376 2024-01-23 12:32 ./usr/libexec/stacks/bin/clone_filter -rwxr-xr-x root/root 516176 2024-01-23 12:32 ./usr/libexec/stacks/bin/cstacks lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 32838 2024-01-23 12:32 ./usr/libexec/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 867768 2024-01-23 12:32 ./usr/libexec/stacks/bin/gstacks -rwxr-xr-x root/root 287080 2024-01-23 12:32 ./usr/libexec/stacks/bin/kmer_filter -rwxr-xr-x root/root 397424 2024-01-23 12:32 ./usr/libexec/stacks/bin/phasedstacks -rwxr-xr-x root/root 1166512 2024-01-23 12:32 ./usr/libexec/stacks/bin/populations -rwxr-xr-x root/root 539784 2024-01-23 12:32 ./usr/libexec/stacks/bin/process_radtags -rwxr-xr-x root/root 382224 2024-01-23 12:32 ./usr/libexec/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2024-01-23 12:32 ./usr/libexec/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 15364 2024-01-23 12:32 ./usr/libexec/stacks/bin/ref_map.pl -rwxr-xr-x root/root 475016 2024-01-23 12:32 ./usr/libexec/stacks/bin/sstacks -rwxr-xr-x root/root 1040 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus -rwxr-xr-x root/root 7316 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1244 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-gdb -rwxr-xr-x root/root 1773 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage -rwxr-xr-x root/root 22320 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 3037 2024-01-23 12:32 ./usr/libexec/stacks/bin/stacks-samtools-tview -rwxr-xr-x root/root 494928 2024-01-23 12:32 ./usr/libexec/stacks/bin/tsv2bam -rwxr-xr-x root/root 512880 2024-01-23 12:32 ./usr/libexec/stacks/bin/ustacks drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/share/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-23 12:32 ./usr/share/doc/stacks/ -rw-r--r-- root/root 1451 2024-01-19 16:09 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1348 2024-01-23 12:32 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 31698 2023-12-05 19:06 ./usr/share/doc/stacks/changelog.gz -rw-r--r-- root/root 1730 2024-01-19 16:09 ./usr/share/doc/stacks/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1361 B] Get:5 copy:/<>/apt_archive ./ Packages [1440 B] Fetched 3416 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 51.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1+b1 [565 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1+b1 [950 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b3 [66.9 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b2 [43.9 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b2 [121 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.26-1 [98.2 kB] Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1+b1 [99.0 kB] Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.61-1 [217 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b2 [36.3 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b2 [24.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b1 [128 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b2 [32.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b2 [98.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b2 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b2 [29.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:73 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1 [338 kB] Get:74 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:75 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.13-1 [10.7 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.76-1 [183 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b4 [143 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b2 [17.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b1 [42.2 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b1 [99.2 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b1 [57.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1+b1 [27.1 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b2 [24.7 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b2 [8704 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b3 [174 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b2 [72.7 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b1 [20.3 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1 [34.7 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (100 MB/s) Selecting previously unselected package netbase. 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Setting up libberkeleydb-perl:amd64 (0.64-2+b2) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b1) ... Setting up libmouse-perl (2.5.10-1+b4) ... Setting up libdata-messagepack-perl (1.02-1+b2) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b2) ... 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Setting up libemail-address-xs-perl (1.05-1+b2) ... Setting up libnet-ssleay-perl:amd64 (1.94-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1+b1) ... Setting up gpgconf (2.2.40-1.1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-1.1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up libcgi-pm-perl (4.61-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.76-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.13-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 370436 Build-Time: 250 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 13 Job: stacks_2.66+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: stacks Package-Time: 274 Source-Version: 2.66+dfsg-1 Space: 370436 Status: successful Version: 2.66+dfsg-1 -------------------------------------------------------------------------------- Finished at 2024-02-10T15:45:47Z Build needed 00:04:34, 370436k disk space