sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | staden-io-lib 1.14.13-2 (armel) Fri, 17 Jul 2020 09:19:59 +0000 | +==============================================================================+ Package: staden-io-lib Version: 1.14.13-2 Source Version: 1.14.13-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b52a2b33-07fc-4a02-a606-30b140bfb637' with '<>' I: NOTICE: Log filtering will replace 'build/staden-io-lib-mYHlg9/resolver-Ytr3aK' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-17-0818.35.pdiff [6628 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-17-0818.35.pdiff [6628 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-17-0818.35.pdiff [5617 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-17-0818.35.pdiff [5617 B] Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [7978 kB] Fetched 8192 kB in 2s (5349 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'staden-io-lib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden-io-lib.git Please use: git clone https://salsa.debian.org/med-team/staden-io-lib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3397 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main staden-io-lib 1.14.13-2 (dsc) [2469 B] Get:2 http://debian.oregonstate.edu/debian unstable/main staden-io-lib 1.14.13-2 (tar) [3379 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main staden-io-lib 1.14.13-2 (diff) [15.9 kB] Fetched 3397 kB in 3s (1238 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/staden-io-lib-mYHlg9/staden-io-lib-1.14.13' with '<>' I: NOTICE: Log filtering will replace 'build/staden-io-lib-mYHlg9' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, libhtscodecs-dev, d-shlibs, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libcurl4-gnutls-dev, libhtscodecs-dev, d-shlibs, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [440 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1919 B in 0s (89.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-base:armel gcc-10-cross-base gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libffi7:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgcrypt20:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgssapi-krb5-2:armel libhogweed6:armel libhtscodecs-dev:armel libhtscodecs2:armel libicu67 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libnettle8:armel libnghttp2-14:armel libp11-kit0:armel libperl5.30 libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel glibc-doc manpages-dev:armel libcurl4-doc:armel libgnutls28-dev:armel libidn11-dev:armel libkrb5-dev:armel libldap2-dev:armel librtmp-dev:armel libssh2-1-dev:armel pkg-config:armel gnupg git bzr rng-tools:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel libstdc++-9-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:armel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armel krb5-locales:armel publicsuffix:armel libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-base:armel gcc-10-cross-base gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libffi7:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgcrypt20:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgssapi-krb5-2:armel libhogweed6:armel libhtscodecs-dev:armel libhtscodecs2:armel libicu67 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libnettle8:armel libnghttp2-14:armel libp11-kit0:armel libperl5.30 libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel zlib1g-dev:armel 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 98.0 MB of archives. After this operation, 383 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.35.2-7 [139 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armel gcc-10-base armel 10.1.0-6 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.3.0-15 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.34.90.20200706-1 [2772 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-1 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-15 [1701 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-15 [10.7 MB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.3.0-13cross1 [197 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.3.0-13cross1 [6820 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.31-1cross2 [1136 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 10.1.0-3cross1 [38.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 10.1.0-3cross1 [84.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 10.1.0-3cross1 [8804 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.3.0-13cross1 [341 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 10.1.0-3cross1 [368 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 10.1.0-3cross1 [114 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.3.0-13cross1 [644 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.3.0-13cross1 [7181 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.7.6-1cross2 [1198 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.31-1cross2 [1936 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.3.0-13cross1 [1714 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.3.0-13cross1 [7403 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.93 [17.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 10.1.0-6 [38.3 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.16-1 [101 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.31-1 [2359 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.3.0-15 [347 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 10.1.0-6 [9024 B] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libbrotli1 armel 1.0.7-7 [263 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libbz2-1.0 armel 1.0.8-3 [45.4 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.7.6-1 [1096 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.16-1 [120 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.31-1 [1977 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.45.6-1 [71.0 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.2.0+dfsg-6 [198 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libnettle8 armel 3.6-2 [254 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libhogweed6 armel 3.6-2 [300 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-4 [359 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.3.0-1 [83.5 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libffi7 armel 3.3-4 [19.7 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.23.20-1 [310 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.16.0-2 [49.8 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.6.14-2+b1 [1104 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.17-10 [61.6 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.17-10 [113 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-2 [14.5 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1g-1 [1278 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.17-10 [321 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.17-10 [135 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.6 [572 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-2 [67.6 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-2 [98.7 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.50+dfsg-1 [92.9 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.50+dfsg-1+b1 [204 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.41.0-2 [61.5 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.21.0-1.1 [54.1 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-2 [84.7 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.38-2 [67.6 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.8.6-2 [486 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.8.0-2.1 [126 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.68.0-1+b1 [284 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel libcurl4-gnutls-dev armel 7.68.0-1+b1 [377 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 10.1.0-6 [86.7 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 10.1.0-6 [409 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 10.1.0-6 [115 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.3.0-15 [645 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armel libhtscodecs2 armel 0.5-3 [50.1 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main armel libhtscodecs-dev armel 0.5-3 [2518 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.3.0-15 [1745 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-2 [185 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.0 MB in 1s (110 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10430 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.35.2-7_amd64.deb ... Unpacking bsdextrautils (2.35.2-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Preparing to unpack .../086-libcrypt1_1%3a4.4.16-1_armel.deb ... Unpacking libcrypt1:armel (1:4.4.16-1) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../087-libc6_2.31-1_armel.deb ... Unpacking libc6:armel (2.31-1) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../088-libasan5_9.3.0-15_armel.deb ... Unpacking libasan5:armel (9.3.0-15) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../089-libatomic1_10.1.0-6_armel.deb ... Unpacking libatomic1:armel (10.1.0-6) ... Selecting previously unselected package libbrotli1:armel. Preparing to unpack .../090-libbrotli1_1.0.7-7_armel.deb ... Unpacking libbrotli1:armel (1.0.7-7) ... Selecting previously unselected package libbz2-1.0:armel. Preparing to unpack .../091-libbz2-1.0_1.0.8-3_armel.deb ... Unpacking libbz2-1.0:armel (1.0.8-3) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../092-linux-libc-dev_5.7.6-1_armel.deb ... Unpacking linux-libc-dev:armel (5.7.6-1) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../093-libcrypt-dev_1%3a4.4.16-1_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../094-libc6-dev_2.31-1_armel.deb ... Unpacking libc6-dev:armel (2.31-1) ... Selecting previously unselected package libcom-err2:armel. Preparing to unpack .../095-libcom-err2_1.45.6-1_armel.deb ... Unpacking libcom-err2:armel (1.45.6-1) ... Selecting previously unselected package libgmp10:armel. Preparing to unpack .../096-libgmp10_2%3a6.2.0+dfsg-6_armel.deb ... Unpacking libgmp10:armel (2:6.2.0+dfsg-6) ... Selecting previously unselected package libnettle8:armel. Preparing to unpack .../097-libnettle8_3.6-2_armel.deb ... Unpacking libnettle8:armel (3.6-2) ... Selecting previously unselected package libhogweed6:armel. Preparing to unpack .../098-libhogweed6_3.6-2_armel.deb ... Unpacking libhogweed6:armel (3.6-2) ... Selecting previously unselected package libunistring2:armel. Preparing to unpack .../099-libunistring2_0.9.10-4_armel.deb ... Unpacking libunistring2:armel (0.9.10-4) ... Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../100-libidn2-0_2.3.0-1_armel.deb ... Unpacking libidn2-0:armel (2.3.0-1) ... Selecting previously unselected package libffi7:armel. Preparing to unpack .../101-libffi7_3.3-4_armel.deb ... Unpacking libffi7:armel (3.3-4) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../102-libp11-kit0_0.23.20-1_armel.deb ... Unpacking libp11-kit0:armel (0.23.20-1) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../103-libtasn1-6_4.16.0-2_armel.deb ... Unpacking libtasn1-6:armel (4.16.0-2) ... Selecting previously unselected package libgnutls30:armel. Preparing to unpack .../104-libgnutls30_3.6.14-2+b1_armel.deb ... Unpacking libgnutls30:armel (3.6.14-2+b1) ... Selecting previously unselected package libkrb5support0:armel. Preparing to unpack .../105-libkrb5support0_1.17-10_armel.deb ... Unpacking libkrb5support0:armel (1.17-10) ... Selecting previously unselected package libk5crypto3:armel. Preparing to unpack .../106-libk5crypto3_1.17-10_armel.deb ... Unpacking libk5crypto3:armel (1.17-10) ... Selecting previously unselected package libkeyutils1:armel. Preparing to unpack .../107-libkeyutils1_1.6.1-2_armel.deb ... Unpacking libkeyutils1:armel (1.6.1-2) ... Selecting previously unselected package libssl1.1:armel. Preparing to unpack .../108-libssl1.1_1.1.1g-1_armel.deb ... Unpacking libssl1.1:armel (1.1.1g-1) ... Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../109-libkrb5-3_1.17-10_armel.deb ... Unpacking libkrb5-3:armel (1.17-10) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../110-libgssapi-krb5-2_1.17-10_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.17-10) ... Selecting previously unselected package libdb5.3:armel. Preparing to unpack .../111-libdb5.3_5.3.28+dfsg1-0.6_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../112-libsasl2-modules-db_2.1.27+dfsg-2_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../113-libsasl2-2_2.1.27+dfsg-2_armel.deb ... Unpacking libsasl2-2:armel (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../114-libldap-common_2.4.50+dfsg-1_all.deb ... Unpacking libldap-common (2.4.50+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:armel. Preparing to unpack .../115-libldap-2.4-2_2.4.50+dfsg-1+b1_armel.deb ... Unpacking libldap-2.4-2:armel (2.4.50+dfsg-1+b1) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../116-libnghttp2-14_1.41.0-2_armel.deb ... Unpacking libnghttp2-14:armel (1.41.0-2) ... Selecting previously unselected package libpsl5:armel. Preparing to unpack .../117-libpsl5_0.21.0-1.1_armel.deb ... Unpacking libpsl5:armel (0.21.0-1.1) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../118-zlib1g_1%3a1.2.11.dfsg-2_armel.deb ... Unpacking zlib1g:armel (1:1.2.11.dfsg-2) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../119-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libgpg-error0:armel. Preparing to unpack .../120-libgpg-error0_1.38-2_armel.deb ... Unpacking libgpg-error0:armel (1.38-2) ... Selecting previously unselected package libgcrypt20:armel. Preparing to unpack .../121-libgcrypt20_1.8.6-2_armel.deb ... Unpacking libgcrypt20:armel (1.8.6-2) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../122-libssh2-1_1.8.0-2.1_armel.deb ... Unpacking libssh2-1:armel (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../123-libcurl3-gnutls_7.68.0-1+b1_armel.deb ... Unpacking libcurl3-gnutls:armel (7.68.0-1+b1) ... Selecting previously unselected package libcurl4-gnutls-dev:armel. Preparing to unpack .../124-libcurl4-gnutls-dev_7.68.0-1+b1_armel.deb ... Unpacking libcurl4-gnutls-dev:armel (7.68.0-1+b1) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../125-libgomp1_10.1.0-6_armel.deb ... Unpacking libgomp1:armel (10.1.0-6) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../126-libstdc++6_10.1.0-6_armel.deb ... Unpacking libstdc++6:armel (10.1.0-6) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../127-libubsan1_10.1.0-6_armel.deb ... Unpacking libubsan1:armel (10.1.0-6) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../128-libgcc-9-dev_9.3.0-15_armel.deb ... Unpacking libgcc-9-dev:armel (9.3.0-15) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../129-libhtscodecs2_0.5-3_armel.deb ... Unpacking libhtscodecs2:armel (0.5-3) ... Selecting previously unselected package libhtscodecs-dev:armel. Preparing to unpack .../130-libhtscodecs-dev_0.5-3_armel.deb ... Unpacking libhtscodecs-dev:armel (0.5-3) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../131-libstdc++-9-dev_9.3.0-15_armel.deb ... Unpacking libstdc++-9-dev:armel (9.3.0-15) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../132-zlib1g-dev_1%3a1.2.11.dfsg-2_armel.deb ... Unpacking zlib1g-dev:armel (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../133-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up binutils-arm-linux-gnueabi (2.34.90.20200706-1) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.35.2-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-3) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:armel (5.7.6-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up libldap-common (2.4.50+dfsg-1) ... Setting up linux-libc-dev-armel-cross (5.7.6-1cross2) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.3.0-13cross1) ... Setting up gcc-10-base:armel (10.1.0-6) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.3.0-13cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.93) ... Setting up gcc-9-cross-base (9.3.0-13cross1) ... Setting up gcc-10-cross-base (10.1.0-3cross1) ... Setting up libc6-armel-cross (2.31-1cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-1) ... Setting up libc6-dev-armel-cross (2.31-1cross2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.3.0-15) ... Setting up libgomp1-armel-cross (10.1.0-3cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-15) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-armel-cross (10.1.0-3cross1) ... Setting up m4 (1.4.18-4) ... Setting up libstdc++6-armel-cross (10.1.0-3cross1) ... Setting up libatomic1-armel-cross (10.1.0-3cross1) ... Setting up perl (5.30.3-4) ... Setting up libasan5-armel-cross (9.3.0-13cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libubsan1-armel-cross (10.1.0-3cross1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up g++-9 (9.3.0-15) ... Setting up libgcc-9-dev-armel-cross (9.3.0-13cross1) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2) ... Setting up libstdc++-9-dev-armel-cross (9.3.0-13cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gcc-9-arm-linux-gnueabi (9.3.0-13cross1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up g++-9-arm-linux-gnueabi (9.3.0-13cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libcrypt1:armel (1:4.4.16-1) ... Setting up libgcc-s1:armel (10.1.0-6) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.31-1) ... Setting up libcrypt-dev:armel (1:4.4.16-1) ... Setting up libtasn1-6:armel (4.16.0-2) ... Setting up libc6-dev:armel (2.31-1) ... Setting up libbz2-1.0:armel (1.0.8-3) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:armel (10.1.0-6) ... Setting up libhtscodecs2:armel (0.5-3) ... Setting up libkeyutils1:armel (1.6.1-2) ... Setting up libgpg-error0:armel (1.38-2) ... Setting up libssl1.1:armel (1.1.1g-1) ... Setting up libbrotli1:armel (1.0.7-7) ... Setting up libffi7:armel (3.3-4) ... Setting up libnghttp2-14:armel (1.41.0-2) ... Setting up libunistring2:armel (0.9.10-4) ... Setting up libgcrypt20:armel (1.8.6-2) ... Setting up debhelper (13.2) ... Setting up zlib1g:armel (1:1.2.11.dfsg-2) ... Setting up libidn2-0:armel (2.3.0-1) ... Setting up libcom-err2:armel (1.45.6-1) ... Setting up libgomp1:armel (10.1.0-6) ... Setting up libkrb5support0:armel (1.17-10) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-2) ... Setting up libhtscodecs-dev:armel (0.5-3) ... Setting up libasan5:armel (9.3.0-15) ... Setting up libnettle8:armel (3.6-2) ... Setting up libgmp10:armel (2:6.2.0+dfsg-6) ... Setting up libp11-kit0:armel (0.23.20-1) ... Setting up libatomic1:armel (10.1.0-6) ... Setting up libk5crypto3:armel (1.17-10) ... Setting up libsasl2-2:armel (2.1.27+dfsg-2) ... Setting up libubsan1:armel (10.1.0-6) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-2) ... Setting up libssh2-1:armel (1.8.0-2.1) ... Setting up libkrb5-3:armel (1.17-10) ... Setting up libpsl5:armel (0.21.0-1.1) ... Setting up libhogweed6:armel (3.6-2) ... Setting up libgcc-9-dev:armel (9.3.0-15) ... Setting up libgnutls30:armel (3.6.14-2+b1) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:armel (1.17-10) ... Setting up libstdc++-9-dev:armel (9.3.0-15) ... Setting up libldap-2.4-2:armel (2.4.50+dfsg-1+b1) ... Setting up libcurl3-gnutls:armel (7.68.0-1+b1) ... Setting up libcurl4-gnutls-dev:armel (7.68.0-1+b1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.31-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34.90.20200706-1 dpkg-dev_1.20.5 g++-9_9.3.0-15 gcc-9_9.3.0-15 libc6-dev_2.31-1 libstdc++-9-dev_9.3.0-15 libstdc++-9-dev-armel-cross_9.3.0-13cross1 libstdc++6_10.1.0-6 libstdc++6-armel-cross_10.1.0-3cross1 linux-libc-dev_5.7.6-1 Package versions: adduser_3.118 apt_2.1.7 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34.90.20200706-1 binutils-arm-linux-gnueabi_2.34.90.20200706-1 binutils-common_2.34.90.20200706-1 binutils-x86-64-linux-gnu_2.34.90.20200706-1 bsdextrautils_2.35.2-7 bsdutils_1:2.35.2-7 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.32-2 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-15 cpp-9-arm-linux-gnueabi_9.3.0-13cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3.1 crossbuild-essential-armel_12.8 d-shlibs_0.93 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-7 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-15 g++-9-arm-linux-gnueabi_9.3.0-13cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-6 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-15 gcc-9-arm-linux-gnueabi_9.3.0-13cross1 gcc-9-arm-linux-gnueabi-base_9.3.0-13cross1 gcc-9-base_9.3.0-15 gcc-9-cross-base_9.3.0-13cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.7 libarchive-zip-perl_1.68-1 libasan5_9.3.0-15 libasan5-armel-cross_9.3.0-13cross1 libatomic1_10.1.0-6 libatomic1-armel-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34.90.20200706-1 libblkid1_2.35.2-7 libbrotli1_1.0.7-7 libbz2-1.0_1.0.8-3 libc-bin_2.31-1 libc-dev-bin_2.31-1 libc6_2.31-1 libc6-armel-cross_2.31-1cross2 libc6-dev_2.31-1 libc6-dev-armel-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcc1-0_10.1.0-6 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34.90.20200706-1 libctf0_2.34.90.20200706-1 libcurl3-gnutls_7.68.0-1+b1 libcurl4-gnutls-dev_7.68.0-1+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-7 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-15 libgcc-9-dev-armel-cross_9.3.0-13cross1 libgcc-s1_10.1.0-6 libgcc-s1-armel-cross_10.1.0-3cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6 libgomp1-armel-cross_10.1.0-3cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libhtscodecs-dev_0.5-3 libhtscodecs2_0.5-3 libicu67_67.1-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-6 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-6 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-7 libmpc3_1.1.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libpsl5_0.21.0-1.1 libquadmath0_10.1.0-6 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-7 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-15 libstdc++-9-dev-armel-cross_9.3.0-13cross1 libstdc++6_10.1.0-6 libstdc++6-armel-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsystemd0_245.6-3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-6 libubsan1_10.1.0-6 libubsan1-armel-cross_10.1.0-3cross1 libuchardet0_0.0.7-1 libudev1_245.6-3 libunistring2_0.9.10-4 libuuid1_2.35.2-7 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-3 linux-libc-dev_5.7.6-1 linux-libc-dev-armel-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-7 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.35.2-7 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden-io-lib Binary: staden-io-lib-utils, libstaden-read-dev, libstaden-read14, staden-io-lib-examples Architecture: any all Version: 1.14.13-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Thorsten Alteholz , Michael R. Crusoe Homepage: https://github.com/jkbonfield/io_lib Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/staden-io-lib Vcs-Git: https://salsa.debian.org/med-team/staden-io-lib.git Testsuite: autopkgtest Testsuite-Triggers: smalt-examples Build-Depends: debhelper-compat (= 13), zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, libhtscodecs-dev, d-shlibs Package-List: libstaden-read-dev deb libdevel optional arch=any libstaden-read14 deb libs optional arch=any staden-io-lib-examples deb science optional arch=all staden-io-lib-utils deb science optional arch=any Checksums-Sha1: 678594bfa0b66616b0fcc7e31a669900acb4aac9 3378761 staden-io-lib_1.14.13.orig.tar.gz 778ae019a37b81be4097e684d4130b6c8b0f4db3 15892 staden-io-lib_1.14.13-2.debian.tar.xz Checksums-Sha256: 583c01d8ddaa2a86b0ff8e9ba1b63a05a4e40846651b3882a0e8101290cbe3ef 3378761 staden-io-lib_1.14.13.orig.tar.gz 190dfa23249e430a4f9b7b3f00aa47dd6a66e3706e4121d94568c284e486a7eb 15892 staden-io-lib_1.14.13-2.debian.tar.xz Files: c586ca633e6de59dabb480f05fc38195 3378761 staden-io-lib_1.14.13.orig.tar.gz 77a7f8ee95b7685ea8005c365e6495ad 15892 staden-io-lib_1.14.13-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl8QPskACgkQPCZ2P2xn 5uKzkg//WR87iCIyNFEV4n5TCF7koDbOS1DfhF6nCvDYLpJgJyMmjQum6LWqDWue 9SdVN6NPGGNsSnofcXHgN+xJ4bSGe7HJGVL2uvNdZaqIvvHUSakc1tBtEU9l15l8 XYXQHYxdySjcLX1wPaV5R5UboM/jC145+hLaeEXAw21gKvhsc9UFt2JEYep7cUWL HuqzcfF3RWS/NtkFhej8EUA5L56RUSjwpaKVycLavpqJQoGUPHAwgNTGSmXvNdJc t3/vgFqMb0O/fCQ+b9QF7zQMYE+bALZ/5lUDRtNjqOe7ZFFpe5YGHvgzEQ0BreXr ebXnemrpnJEDbTEktRtrasmKrRsW8TJvCLcFLiA/TadUNIXk3MFbV2VLB1CsvalU En+r9+P5vjtVL78J6iDOkK8Ie3MYHl4vQYtJqjLOoo7eCdnMQQLgXA62DkCApyxe 5EYCaSf2bxvQGCDUy94/nKVXb3gmtuJVqStGZd3b742TyO/YQlI7S7c/4EW4ePYr k/6GbMpHlKtV4jXqyGBzZhWph3XZ/rNWiUS/JqguXzPT0I8fhNQLj9J3M9l/9ncG 5V+jzX/E038ysiJ295aoLz+45ttFZls0amN6jvUfqw3UDe6imdg3+Toi5MCZsirF kT5+jlgrruEB1eHa3VZJ0DKHqt+HD1QmG37meZy3EYt0uwo/KPk= =wEZy -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.7hHXfdtz/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 16 11:49:29 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.14.13-2.dsc dpkg-source: info: extracting staden-io-lib in /<> dpkg-source: info: unpacking staden-io-lib_1.14.13.orig.tar.gz dpkg-source: info: unpacking staden-io-lib_1.14.13-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pathmax.patch dpkg-source: info: applying fix_fseeko.patch dpkg-source: info: applying spelling dpkg-source: info: applying usedebianhtscodecs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b52a2b33-07fc-4a02-a606-30b140bfb637 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package staden-io-lib dpkg-buildpackage: info: source version 1.14.13-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam rm -f config.sub config.guess ## ## Try to verify correct ABI version right in the beginning ## Strangely enough d-shlibmove fails in detecting it in this package ## Since upstream build system creates libstaden-read.so.11.1.0 this code is not ## activated but it should be considered in case of future problems with ABI version ## #UPSTREAMABI=`grep ^VERS_CURRENT configure.in | sed 's/^VERS_CURRENT[[:space:]]*=\([0-9]\+\)[[:space:]]*/\1/'` ; \ #DEBABI=`grep '^Package: libstaden-read[0-9]\+' debian/control | sed 's/Package: libstaden-read\([0-9]\+\)/\1/'` ; \ #if [ ${UPSTREAMABI} -ne ${DEBABI} ] ; then \ # echo "Upstream has bumped ABI to ${UPSTREAMABI} but Debian is using libstaden-read${DEBABI} (see bug #710225)" ; \ # exit 1 ; \ #fi make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:79: installing './compile' configure.ac:81: installing './config.guess' configure.ac:81: installing './config.sub' configure.ac:10: installing './install-sh' configure.ac:10: installing './missing' io_lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' export ac_cv_func_mmap_fixed_mapped=yes && dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabi-gcc... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabi-nm -B checking the name lister (/usr/bin/arm-linux-gnueabi-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabi format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabi/bin/ld option to reload object files... -r checking for arm-linux-gnueabi-objdump... arm-linux-gnueabi-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabi-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabi-strip... (cached) arm-linux-gnueabi-strip checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking command to parse /usr/bin/arm-linux-gnueabi-nm -B output from arm-linux-gnueabi-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabi-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabi-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabi-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-gcc static flag -static works... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-gcc linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for C compiler warning flags... -Wall checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.68.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... no checking for lzma_easy_buffer_encode in -llzma... no checking for bsc_compress in -lbsc... no checking whether byte ordering is bigendian... (cached) no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for zlib.h... (cached) yes checking stdio_ext.h usability... yes checking stdio_ext.h presence... yes checking for stdio_ext.h... yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 4 checking for inline... inline checking for mode_t... yes checking for fileno... yes checking for fstat... yes checking for mallopt... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for library containing pthread_join... -lpthread checking for library containing cos... -lm checking for strdup... yes checking for fsync... yes checking that generated files are newer than configure... done === configuring in htscodecs (/<>/htscodecs) configure: WARNING: no configuration information is in htscodecs configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib/version.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in io_lib make[3]: Entering directory '/<>/io_lib' /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -o libstaden_read_la-scf_extras.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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-D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_io.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_io.c -o libstaden_read_la-cram_io.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_index.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_index.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_index.c -o libstaden_read_la-cram_index.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c zfio.c -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c zfio.c -o libstaden_read_la-zfio.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dstring.c -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dstring.c -o libstaden_read_la-dstring.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo './'`string_alloc.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c string_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-string_alloc.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c string_alloc.c -o libstaden_read_la-string_alloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-md5.lo `test -f 'md5.c' || echo './'`md5.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c md5.c -fPIC -DPIC -o .libs/libstaden_read_la-md5.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c md5.c -o libstaden_read_la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-crc32.lo `test -f 'crc32.c' || echo './'`crc32.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c crc32.c -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c crc32.c -o libstaden_read_la-crc32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scram.c -fPIC -DPIC -o .libs/libstaden_read_la-scram.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c thread_pool.c -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -fPIC -DPIC -o .libs/libstaden_read_la-binning.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o libtool: compile: arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include/htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -o libstaden_read_la-bgzip.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 15:0:1 -Wl,-z,relro -Wl,-z,now -o libstaden-read.la -rpath /usr/lib/arm-linux-gnueabi libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-crc32.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo libstaden_read_la-bgzip.lo -lz -lcurl -lhtscodecs -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o .libs/libstaden_read_la-bgzip.o -lz /usr/lib/arm-linux-gnueabi/libcurl-gnutls.so -lhtscodecs -lm -lpthread -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libstaden-read.so.14 -o .libs/libstaden-read.so.14.1.0 libtool: link: (cd ".libs" && rm -f "libstaden-read.so.14" && ln -s "libstaden-read.so.14.1.0" "libstaden-read.so.14") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.14.1.0" "libstaden-read.so") libtool: link: arm-linux-gnueabi-ar cr .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-crc32.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libstaden_read_la-binning.o libstaden_read_la-cram_bambam.o libstaden_read_la-bgzip.o libtool: link: arm-linux-gnueabi-ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) make[3]: Leaving directory '/<>/io_lib' Making all in progs make[3]: Entering directory '/<>/progs' arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 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-O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_info.o srf_info.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_list.o srf_list.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_exp.o hash_exp.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_dump.o cram_dump.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_index.o cram_index.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scramble.o scramble.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_test.o scram_test.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_size.o cram_size.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_filter.o cram_filter.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_filter cram_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_filter cram_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/<>/progs' Making all in tests make[3]: Entering directory '/<>/tests' arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_io_test.o cram_io_test.c /bin/bash ../libtool --tag=CC --mode=link arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o cram_io_test cram_io_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: arm-linux-gnueabi-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_io_test cram_io_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in io_lib make[2]: Entering directory '/<>/io_lib' make[3]: Entering directory '/<>/io_lib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.14.1.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.so.14.1.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libstaden-read.so.14.1.0 libstaden-read.so.14 || { rm -f libstaden-read.so.14 && ln -s libstaden-read.so.14.1.0 libstaden-read.so.14; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libstaden-read.so.14.1.0 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.14.1.0 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c .libs/libstaden-read.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.la libtool: install: /usr/bin/install -c .libs/libstaden-read.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/io_lib' make[2]: Leaving directory '/<>/io_lib' Making install in progs make[2]: Entering directory '/<>/progs' make[3]: Entering directory '/<>/progs' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size cram_filter '/<>/debian/tmp/usr/bin' libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/convert_trace /<>/debian/tmp/usr/bin/convert_trace libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/makeSCF /<>/debian/tmp/usr/bin/makeSCF libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/extract_seq /<>/debian/tmp/usr/bin/extract_seq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/extract_qual /<>/debian/tmp/usr/bin/extract_qual libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/extract_fastq /<>/debian/tmp/usr/bin/extract_fastq libtool: install: /usr/bin/install -c index_tar /<>/debian/tmp/usr/bin/index_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scf_dump /<>/debian/tmp/usr/bin/scf_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scf_info /<>/debian/tmp/usr/bin/scf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scf_update /<>/debian/tmp/usr/bin/scf_update libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/get_comment /<>/debian/tmp/usr/bin/get_comment libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/hash_tar /<>/debian/tmp/usr/bin/hash_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/hash_extract /<>/debian/tmp/usr/bin/hash_extract libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/hash_list /<>/debian/tmp/usr/bin/hash_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/trace_dump /<>/debian/tmp/usr/bin/trace_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/hash_sff /<>/debian/tmp/usr/bin/hash_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/append_sff /<>/debian/tmp/usr/bin/append_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/ztr_dump /<>/debian/tmp/usr/bin/ztr_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_dump_all /<>/debian/tmp/usr/bin/srf_dump_all libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_index_hash /<>/debian/tmp/usr/bin/srf_index_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_extract_linear /<>/debian/tmp/usr/bin/srf_extract_linear libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_extract_hash /<>/debian/tmp/usr/bin/srf_extract_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf2fastq /<>/debian/tmp/usr/bin/srf2fastq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf2fasta /<>/debian/tmp/usr/bin/srf2fasta libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_filter /<>/debian/tmp/usr/bin/srf_filter libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_info /<>/debian/tmp/usr/bin/srf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/srf_list /<>/debian/tmp/usr/bin/srf_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/hash_exp /<>/debian/tmp/usr/bin/hash_exp libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/cram_dump /<>/debian/tmp/usr/bin/cram_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/cram_index /<>/debian/tmp/usr/bin/cram_index libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scramble /<>/debian/tmp/usr/bin/scramble libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scram_merge /<>/debian/tmp/usr/bin/scram_merge libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scram_pileup /<>/debian/tmp/usr/bin/scram_pileup libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scram_flagstat /<>/debian/tmp/usr/bin/scram_flagstat libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/scram_test /<>/debian/tmp/usr/bin/scram_test libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/cram_size /<>/debian/tmp/usr/bin/cram_size libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/cram_filter /<>/debian/tmp/usr/bin/cram_filter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/progs' make[2]: Leaving directory '/<>/progs' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/<>/debian/tmp/usr/share/man/man1' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/<>/debian/tmp/usr/share/man/man3' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/<>/debian/tmp/usr/share/man/man4' /bin/mkdir -p '/<>/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/cram_bambam.h '/<>/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/zfio.h io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h io_lib/bgzip.h io_lib/version.h '/<>/debian/tmp/usr/include/io_lib' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a mkdir -p /<>/debian/libstaden-read-dev/usr/bin mv /<>/debian/staden-io-lib-utils/usr/bin/io_lib-config /<>/debian/libstaden-read-dev/usr/bin # # Call d-shlibmove to comply with library packaging guide d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev "debian/tmp/usr/include" usr \ --override s/libhtscodecs2-dev/libhtscodecs-dev/ \ debian/tmp/usr/lib/*/libstaden-read.so Library package automatic movement utility --> libcurl4-gnutls-dev package exists. --> libhtscodecs-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libstaden-read-dev/usr/lib/arm-linux-gnueabi install -d -m 755 debian/libstaden-read14/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.a debian/libstaden-read-dev/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.so debian/libstaden-read-dev/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.so.14 debian/libstaden-read14/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libstaden-read.so.14.1.0 debian/libstaden-read14/usr/lib/arm-linux-gnueabi PKGDEV=libstaden-read-dev PKGSHL=libstaden-read14 install -d -m 755 debian/libstaden-read-dev/usr mv debian/tmp/usr/include debian/libstaden-read-dev/usr # # make sure io_lib-config --libs will not return -pie (see #825461) find debian/*/usr/bin -name io_lib-config -exec sed -i -e 's/ *-fPIE//' -e 's/ *-pie//' \{\} \; make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libstaden-read14/DEBIAN/symbols doesn't match completely debian/libstaden-read14.symbols --- debian/libstaden-read14.symbols (libstaden-read14_1.14.13-2_armel) +++ dpkg-gensymbolseoxZyC 2020-07-17 09:21:59.733146167 +0000 @@ -57,6 +57,7 @@ bam_aux_iter@Base 1.14.12 bam_aux_iter_full@Base 1.14.12 bam_aux_size_vec@Base 1.14.12 + bam_aux_skip@Base 1.14.13-2 bam_close@Base 1.14.12 bam_construct_seq@Base 1.14.12 bam_copy@Base 1.14.12 @@ -130,6 +131,15 @@ cram_codec_decoder2encoder@Base 1.14.12 cram_codec_to_id@Base 1.14.12 cram_compress_block@Base 1.14.12 + cram_const_decode_byte@Base 1.14.13-2 + cram_const_decode_free@Base 1.14.13-2 + cram_const_decode_init@Base 1.14.13-2 + cram_const_decode_int@Base 1.14.13-2 + cram_const_decode_long@Base 1.14.13-2 + cram_const_decode_size@Base 1.14.13-2 + cram_const_encode@Base 1.14.13-2 + cram_const_encode_init@Base 1.14.13-2 + cram_const_encode_store@Base 1.14.13-2 cram_content_type2str@Base 1.14.12 cram_deallocate_encoder@Base 1.14.12 cram_decode_TD@Base 1.14.12 @@ -145,6 +155,7 @@ cram_encode_compression_header@Base 1.14.12 cram_encode_container@Base 1.14.12 cram_encode_slice_header@Base 1.14.12 + cram_encoder_get_fd@Base 1.14.13-2 cram_encoder_init@Base 1.14.12 cram_encoding2str@Base 1.14.12 cram_enque_compression_block@Base 1.14.12 @@ -256,6 +267,21 @@ cram_subexp_decode_init@Base 1.14.12 cram_uncompress_block@Base 1.14.12 cram_update_curr_slice@Base 1.14.12 + cram_varint_decode_free@Base 1.14.13-2 + cram_varint_decode_init@Base 1.14.13-2 + cram_varint_decode_int@Base 1.14.13-2 + cram_varint_decode_long@Base 1.14.13-2 + cram_varint_decode_sint@Base 1.14.13-2 + cram_varint_decode_size@Base 1.14.13-2 + cram_varint_decode_slong@Base 1.14.13-2 + cram_varint_encode_free@Base 1.14.13-2 + cram_varint_encode_init@Base 1.14.13-2 + cram_varint_encode_int@Base 1.14.13-2 + cram_varint_encode_long@Base 1.14.13-2 + cram_varint_encode_sint@Base 1.14.13-2 + cram_varint_encode_slong@Base 1.14.13-2 + cram_varint_encode_store@Base 1.14.13-2 + cram_varint_get_block@Base 1.14.13-2 cram_write_SAM_hdr@Base 1.14.12 cram_write_block@Base 1.14.12 cram_write_container@Base 1.14.12 dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'staden-io-lib-utils' in '../staden-io-lib-utils_1.14.13-2_armel.deb'. dpkg-deb: building package 'staden-io-lib-utils-dbgsym' in '../staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb'. dpkg-deb: building package 'libstaden-read-dev' in '../libstaden-read-dev_1.14.13-2_armel.deb'. dpkg-deb: building package 'libstaden-read14' in '../libstaden-read14_1.14.13-2_armel.deb'. dpkg-deb: building package 'libstaden-read14-dbgsym' in '../libstaden-read14-dbgsym_1.14.13-2_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../staden-io-lib_1.14.13-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-07-17T09:22:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden-io-lib_1.14.13-2_armel.changes: -------------------------------------- Format: 1.8 Date: Thu, 16 Jul 2020 13:49:13 +0200 Source: staden-io-lib Binary: libstaden-read-dev libstaden-read14 libstaden-read14-dbgsym staden-io-lib-utils staden-io-lib-utils-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.14.13-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libstaden-read-dev - development files for libstaden-read libstaden-read14 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for manipulating DNA sequencing files Changes: staden-io-lib (1.14.13-2) unstable; urgency=medium . * Don't run dh_missing in for arch independent builds. Checksums-Sha1: 2afd61e48fca99da3cdbc5ed7179d56e41e192ab 310688 libstaden-read-dev_1.14.13-2_armel.deb 4c2479e8270982c55837ee5b98153a0d81d20b8f 528464 libstaden-read14-dbgsym_1.14.13-2_armel.deb a12b06e5a2206caea4f08dafcc4b949fb35cceee 237384 libstaden-read14_1.14.13-2_armel.deb 82dc87ae7b90238f161c401c147e62969415235c 270256 staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb 619e29b78d4bdc175bac223ffb5264ec4c82b0c4 165892 staden-io-lib-utils_1.14.13-2_armel.deb 54b4b7f07d735a049f6f93ddcbdb9e46ca466732 6662 staden-io-lib_1.14.13-2_armel.buildinfo Checksums-Sha256: 326ccb5543240744a1f18bbddaa996ff5900522c2f87cde912ee3425d8524979 310688 libstaden-read-dev_1.14.13-2_armel.deb 681d90c69892b15ed825773a8f09d0cb780e2317843138233bc100e71f6a1196 528464 libstaden-read14-dbgsym_1.14.13-2_armel.deb 347d15d8d53b599af0020405f8dbede82c1b24009fe2cf0e27caac9befdea916 237384 libstaden-read14_1.14.13-2_armel.deb 4be94722667181419e4ba32c37a8a720d52e45f7ad4a25c32bb63dc354b4fa8b 270256 staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb e7abc338fa49c5adc83912324440c851af6e0061491b3feb9f89f938cdce6805 165892 staden-io-lib-utils_1.14.13-2_armel.deb 40cef1df4488ea0af9cca71531eab1479614c33d194e2a643ac8ba9614e00c49 6662 staden-io-lib_1.14.13-2_armel.buildinfo Files: f0d916f8f6eae4e0cf1476de8f61fa84 310688 libdevel optional libstaden-read-dev_1.14.13-2_armel.deb 6a1c1a1e7d10ecbbb0e455e427a9b7a9 528464 debug optional libstaden-read14-dbgsym_1.14.13-2_armel.deb dc036fec1de945c4eb811e4eb23440cb 237384 libs optional libstaden-read14_1.14.13-2_armel.deb 9cd7fcb44b2bd1b392e886a322c4a0bd 270256 debug optional staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb 53d7c12a5be58b0e870df044e2a5f05e 165892 science optional staden-io-lib-utils_1.14.13-2_armel.deb 8ad4583eb76ffeac74060ebc7944072a 6662 science optional staden-io-lib_1.14.13-2_armel.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: staden-io-lib Binary: libstaden-read-dev libstaden-read14 libstaden-read14-dbgsym staden-io-lib-utils staden-io-lib-utils-dbgsym Architecture: armel Version: 1.14.13-2 Checksums-Md5: f0d916f8f6eae4e0cf1476de8f61fa84 310688 libstaden-read-dev_1.14.13-2_armel.deb 6a1c1a1e7d10ecbbb0e455e427a9b7a9 528464 libstaden-read14-dbgsym_1.14.13-2_armel.deb dc036fec1de945c4eb811e4eb23440cb 237384 libstaden-read14_1.14.13-2_armel.deb 9cd7fcb44b2bd1b392e886a322c4a0bd 270256 staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb 53d7c12a5be58b0e870df044e2a5f05e 165892 staden-io-lib-utils_1.14.13-2_armel.deb Checksums-Sha1: 2afd61e48fca99da3cdbc5ed7179d56e41e192ab 310688 libstaden-read-dev_1.14.13-2_armel.deb 4c2479e8270982c55837ee5b98153a0d81d20b8f 528464 libstaden-read14-dbgsym_1.14.13-2_armel.deb a12b06e5a2206caea4f08dafcc4b949fb35cceee 237384 libstaden-read14_1.14.13-2_armel.deb 82dc87ae7b90238f161c401c147e62969415235c 270256 staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb 619e29b78d4bdc175bac223ffb5264ec4c82b0c4 165892 staden-io-lib-utils_1.14.13-2_armel.deb Checksums-Sha256: 326ccb5543240744a1f18bbddaa996ff5900522c2f87cde912ee3425d8524979 310688 libstaden-read-dev_1.14.13-2_armel.deb 681d90c69892b15ed825773a8f09d0cb780e2317843138233bc100e71f6a1196 528464 libstaden-read14-dbgsym_1.14.13-2_armel.deb 347d15d8d53b599af0020405f8dbede82c1b24009fe2cf0e27caac9befdea916 237384 libstaden-read14_1.14.13-2_armel.deb 4be94722667181419e4ba32c37a8a720d52e45f7ad4a25c32bb63dc354b4fa8b 270256 staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb e7abc338fa49c5adc83912324440c851af6e0061491b3feb9f89f938cdce6805 165892 staden-io-lib-utils_1.14.13-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 17 Jul 2020 09:22:04 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.1.7), autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34.90.20200706-1), binutils-common (= 2.34.90.20200706-1), binutils-x86-64-linux-gnu (= 2.34.90.20200706-1), bsdextrautils (= 2.35.2-7), bsdutils (= 1:2.35.2-7), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.32-2), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-15), d-shlibs (= 0.93), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debian-archive-keyring (= 2019.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-15), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-6), gcc-9 (= 9.3.0-15), gcc-9-base (= 9.3.0-15), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.20-1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libapt-pkg6.0 (= 2.1.7), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-15), libatomic1 (= 10.1.0-6), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34.90.20200706-1), libblkid1 (= 2.35.2-7), libbrotli1 (= 1.0.7-7), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.31-1), libc-dev-bin (= 2.31-1), libc6 (= 2.31-1), libc6-dev (= 2.31-1), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.1.0-6), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34.90.20200706-1), libctf0 (= 2.34.90.20200706-1), libcurl3-gnutls (= 7.68.0-1+b1), libcurl4-gnutls-dev (= 7.68.0-1+b1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-9-dev (= 9.3.0-15), libgcc-s1 (= 10.1.0-6), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgnutls30 (= 3.6.14-2+b1), libgomp1 (= 10.1.0-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libhogweed6 (= 3.6-2), libhtscodecs-dev (= 0.5-3), libhtscodecs2 (= 0.5-3), libicu67 (= 67.1-3), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-6), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libldap-2.4-2 (= 2.4.50+dfsg-1+b1), libldap-common (= 2.4.50+dfsg-1), liblsan0 (= 10.1.0-6), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.2-7), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-2), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2), libpsl5 (= 0.21.0-1.1), libquadmath0 (= 10.1.0-6), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-7), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1g-1), libstdc++-9-dev (= 9.3.0-15), libstdc++6 (= 10.1.0-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.6-3), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-6), libubsan1 (= 10.1.0-6), libuchardet0 (= 0.0.7-1), libudev1 (= 245.6-3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.35.2-7), libxml2 (= 2.9.10+dfsg-5+b1), libzstd1 (= 1.4.5+dfsg-3), linux-libc-dev (= 5.7.6-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-7), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1594900153" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libstaden-read-dev_1.14.13-2_armel.deb -------------------------------------- new Debian package, version 2.0. size 310688 bytes: control archive=2428 bytes. 796 bytes, 18 lines control 4109 bytes, 63 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.14.13-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1069 Depends: libstaden-read14 (= 1.14.13-2), libcurl4-gnutls-dev, libhtscodecs-dev, zlib1g-dev Section: libdevel Priority: optional Homepage: https://github.com/jkbonfield/io_lib Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2020-07-16 11:49 ./ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/bin/ -rwxr-xr-x root/root 899 2020-07-16 11:49 ./usr/bin/io_lib-config drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/include/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/include/io_lib/ -rw-r--r-- root/root 10263 2020-07-16 11:49 ./usr/include/io_lib/Read.h -rw-r--r-- root/root 2471 2020-07-16 11:49 ./usr/include/io_lib/abi.h -rw-r--r-- root/root 2480 2020-07-16 11:49 ./usr/include/io_lib/alf.h -rw-r--r-- root/root 3536 2020-07-16 11:49 ./usr/include/io_lib/array.h -rw-r--r-- root/root 24892 2020-07-16 11:49 ./usr/include/io_lib/bam.h -rw-r--r-- root/root 2398 2020-07-16 11:49 ./usr/include/io_lib/bgzip.h -rw-r--r-- root/root 2075 2020-07-16 11:49 ./usr/include/io_lib/binning.h -rw-r--r-- root/root 6268 2020-07-16 11:49 ./usr/include/io_lib/compress.h -rw-r--r-- root/root 15348 2020-07-16 11:49 ./usr/include/io_lib/compression.h -rw-r--r-- root/root 2405 2020-07-16 11:49 ./usr/include/io_lib/cram.h -rw-r--r-- root/root 4777 2020-07-16 11:49 ./usr/include/io_lib/cram_bambam.h -rw-r--r-- root/root 8401 2020-07-16 11:49 ./usr/include/io_lib/cram_codecs.h -rw-r--r-- root/root 3612 2020-07-16 11:49 ./usr/include/io_lib/cram_decode.h -rw-r--r-- root/root 3769 2020-07-16 11:49 ./usr/include/io_lib/cram_encode.h -rw-r--r-- root/root 3365 2020-07-16 11:49 ./usr/include/io_lib/cram_index.h -rw-r--r-- root/root 17635 2020-07-16 11:49 ./usr/include/io_lib/cram_io.h -rw-r--r-- root/root 2587 2020-07-16 11:49 ./usr/include/io_lib/cram_stats.h -rw-r--r-- root/root 34861 2020-07-16 11:49 ./usr/include/io_lib/cram_structs.h -rw-r--r-- root/root 4951 2020-07-16 11:49 ./usr/include/io_lib/deflate_interlaced.h -rw-r--r-- root/root 9589 2020-07-16 11:49 ./usr/include/io_lib/dstring.h -rw-r--r-- root/root 2430 2020-07-16 11:49 ./usr/include/io_lib/error.h -rw-r--r-- root/root 10646 2020-07-16 11:49 ./usr/include/io_lib/expFileIO.h -rw-r--r-- root/root 2392 2020-07-16 11:49 ./usr/include/io_lib/fpoint.h -rw-r--r-- root/root 6952 2020-07-16 11:49 ./usr/include/io_lib/hash_table.h -rw-r--r-- root/root 923 2020-07-16 11:49 ./usr/include/io_lib/jenkins_lookup3.h -rw-r--r-- root/root 2969 2020-07-16 11:49 ./usr/include/io_lib/mFILE.h -rw-r--r-- root/root 6459 2020-07-16 11:49 ./usr/include/io_lib/mach-io.h -rw-r--r-- root/root 1479 2020-07-16 11:49 ./usr/include/io_lib/md5.h -rw-r--r-- root/root 6841 2020-07-16 11:49 ./usr/include/io_lib/misc.h -rw-r--r-- root/root 5965 2020-07-16 11:49 ./usr/include/io_lib/open_trace_file.h -rw-r--r-- root/root 10487 2020-07-16 11:49 ./usr/include/io_lib/os.h -rw-r--r-- root/root 4216 2020-07-16 11:49 ./usr/include/io_lib/plain.h -rw-r--r-- root/root 2183 2020-07-16 11:49 ./usr/include/io_lib/pooled_alloc.h -rw-r--r-- root/root 13914 2020-07-16 11:49 ./usr/include/io_lib/sam_header.h -rw-r--r-- root/root 13901 2020-07-16 11:49 ./usr/include/io_lib/scf.h -rw-r--r-- root/root 4238 2020-07-16 11:49 ./usr/include/io_lib/scf_extras.h -rw-r--r-- root/root 7999 2020-07-16 11:49 ./usr/include/io_lib/scram.h -rw-r--r-- root/root 8453 2020-07-16 11:49 ./usr/include/io_lib/seqIOABI.h -rw-r--r-- root/root 3793 2020-07-16 11:49 ./usr/include/io_lib/sff.h -rw-r--r-- root/root 7141 2020-07-16 11:49 ./usr/include/io_lib/srf.h -rw-r--r-- root/root 3350 2020-07-16 11:49 ./usr/include/io_lib/stdio_hack.h -rw-r--r-- root/root 2423 2020-07-16 11:49 ./usr/include/io_lib/string_alloc.h -rw-r--r-- root/root 3253 2020-07-16 11:49 ./usr/include/io_lib/tar_format.h -rw-r--r-- root/root 6759 2020-07-16 11:49 ./usr/include/io_lib/thread_pool.h -rw-r--r-- root/root 5383 2020-07-16 11:49 ./usr/include/io_lib/traceType.h -rw-r--r-- root/root 7365 2020-07-16 11:49 ./usr/include/io_lib/translate.h -rw-r--r-- root/root 1862 2020-07-16 11:49 ./usr/include/io_lib/version.h -rw-r--r-- root/root 3578 2020-07-16 11:49 ./usr/include/io_lib/vlen.h -rw-r--r-- root/root 2562 2020-07-16 11:49 ./usr/include/io_lib/xalloc.h -rw-r--r-- root/root 2118 2020-07-16 11:49 ./usr/include/io_lib/zfio.h -rw-r--r-- root/root 8081 2020-07-16 11:49 ./usr/include/io_lib/ztr.h drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 650146 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/libstaden-read.a lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/libstaden-read.so -> libstaden-read.so.14.1.0 drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/libstaden-read-dev/ -rw-r--r-- root/root 3681 2020-07-16 11:49 ./usr/share/doc/libstaden-read-dev/changelog.Debian.gz -rw-r--r-- root/root 29617 2020-07-03 15:46 ./usr/share/doc/libstaden-read-dev/changelog.gz -rw-r--r-- root/root 7242 2020-07-16 10:10 ./usr/share/doc/libstaden-read-dev/copyright drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/man/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/man/man3/ -rw-r--r-- root/root 2119 2020-07-16 11:49 ./usr/share/man/man3/ExperimentFile.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/exp2read.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/fread_reading.3.gz -> read_reading.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/fread_scf.3.gz -> read_scf.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/fwrite_reading.3.gz -> write_reading.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/fwrite_scf.3.gz -> write_scf.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/read2exp.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/read2scf.3.gz -> scf2read.3.gz -rw-r--r-- root/root 591 2020-07-16 11:49 ./usr/share/man/man3/read_allocate.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/read_deallocate.3.gz -> read_allocate.3.gz -rw-r--r-- root/root 1550 2020-07-16 11:49 ./usr/share/man/man3/read_reading.3.gz -rw-r--r-- root/root 610 2020-07-16 11:49 ./usr/share/man/man3/read_scf.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/read_scf_header.3.gz -> read_scf.3.gz -rw-r--r-- root/root 783 2020-07-16 11:49 ./usr/share/man/man3/scf2read.3.gz -rw-r--r-- root/root 804 2020-07-16 11:49 ./usr/share/man/man3/write_reading.3.gz -rw-r--r-- root/root 608 2020-07-16 11:49 ./usr/share/man/man3/write_scf.3.gz lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man3/write_scf_header.3.gz -> write_scf.3.gz drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/man/man4/ lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/man/man4/Read.4.gz -> ../man3/read_reading.3.gz libstaden-read14-dbgsym_1.14.13-2_armel.deb ------------------------------------------- new Debian package, version 2.0. size 528464 bytes: control archive=564 bytes. 424 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libstaden-read14-dbgsym Source: staden-io-lib Version: 1.14.13-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 571 Depends: libstaden-read14 (= 1.14.13-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libstaden-read14 Build-Ids: c4e4ada1951d469846903de4cdb45769f257616d drwxr-xr-x root/root 0 2020-07-16 11:49 ./ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/debug/.build-id/c4/ -rw-r--r-- root/root 574332 2020-07-16 11:49 ./usr/lib/debug/.build-id/c4/e4ada1951d469846903de4cdb45769f257616d.debug drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/share/doc/libstaden-read14-dbgsym -> libstaden-read14 libstaden-read14_1.14.13-2_armel.deb ------------------------------------ new Debian package, version 2.0. size 237384 bytes: control archive=4728 bytes. 952 bytes, 20 lines control 323 bytes, 4 lines md5sums 48 bytes, 1 lines shlibs 24262 bytes, 787 lines symbols 65 bytes, 2 lines triggers Package: libstaden-read14 Source: staden-io-lib Version: 1.14.13-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 556 Depends: libc6 (>= 2.29), libcurl3-gnutls (>= 7.16.2), libhtscodecs2 (>= 0.5), zlib1g (>= 1:1.2.3.3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/jkbonfield/io_lib Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2020-07-16 11:49 ./ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/libstaden-read.so.14 -> libstaden-read.so.14.1.0 -rw-r--r-- root/root 491416 2020-07-16 11:49 ./usr/lib/arm-linux-gnueabi/libstaden-read.so.14.1.0 drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/libstaden-read14/ -rw-r--r-- root/root 3681 2020-07-16 11:49 ./usr/share/doc/libstaden-read14/changelog.Debian.gz -rw-r--r-- root/root 29617 2020-07-03 15:46 ./usr/share/doc/libstaden-read14/changelog.gz -rw-r--r-- root/root 7242 2020-07-16 10:10 ./usr/share/doc/libstaden-read14/copyright staden-io-lib-utils-dbgsym_1.14.13-2_armel.deb ---------------------------------------------- new Debian package, version 2.0. size 270256 bytes: control archive=2240 bytes. 1851 bytes, 12 lines control 3913 bytes, 37 lines md5sums Package: staden-io-lib-utils-dbgsym Source: staden-io-lib Version: 1.14.13-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 526 Depends: staden-io-lib-utils (= 1.14.13-2) Section: debug Priority: optional Description: debug symbols for staden-io-lib-utils Build-Ids: 17818083f3377096e5ca854180a101c9c3b108fe 2b4197f26c66d19d49df4b8c6a2bc12e33653bd5 34680c9dacd9b4a38ab8c9c4e9cd6e65c5376f72 3b0d6fbe3924109fd1af83e22e921c7bb8fb4ef0 3c78b69526b6454751a8e47eb78939b1f2627b5e 3da504c0d7d5b243ad010328a47c8503da393aaa 4869da12ce540d0595da2135f353f71b4c9e86fa 51be569da6265cf16fbde212a7eadd0b0e0127df 52cede9ec46c9446b635fbf16c605654eb59d186 5636f156cc83d91ce0fa05fed786fd98583728d2 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Version: 1.14.13-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 533 Depends: libc6 (>= 2.29), libstaden-read14 (>= 1.14.13-2) Suggests: staden-io-lib-examples Section: science Priority: optional Homepage: https://github.com/jkbonfield/io_lib Description: programs for manipulating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to manipulate short reads generated by second and third generation sequencers and stored in SRF format. drwxr-xr-x root/root 0 2020-07-16 11:49 ./ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/bin/ -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/append_sff -rwxr-xr-x root/root 18124 2020-07-16 11:49 ./usr/bin/convert_trace -rwxr-xr-x root/root 22060 2020-07-16 11:49 ./usr/bin/cram_dump -rwxr-xr-x root/root 17964 2020-07-16 11:49 ./usr/bin/cram_filter -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/cram_index -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/cram_size -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/extract_fastq -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/extract_qual -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/extract_seq -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/get_comment -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/hash_exp -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/hash_extract -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/hash_list -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/hash_sff -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/hash_tar -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/index_tar -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/makeSCF -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/scf_dump -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/scf_info -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/scf_update -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/scram_flagstat -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/scram_merge -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/scram_pileup -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/scram_test -rwxr-xr-x root/root 17964 2020-07-16 11:49 ./usr/bin/scramble -rwxr-xr-x root/root 5676 2020-07-16 11:49 ./usr/bin/srf2fasta -rwxr-xr-x root/root 17964 2020-07-16 11:49 ./usr/bin/srf2fastq -rwxr-xr-x root/root 26192 2020-07-16 11:49 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 26212 2020-07-16 11:49 ./usr/bin/srf_filter -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 18032 2020-07-16 11:49 ./usr/bin/srf_info -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/srf_list -rwxr-xr-x root/root 9772 2020-07-16 11:49 ./usr/bin/trace_dump -rwxr-xr-x root/root 13868 2020-07-16 11:49 ./usr/bin/ztr_dump drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc-base/ -rw-r--r-- root/root 304 2020-02-10 09:50 ./usr/share/doc-base/staden-io-lib-hash-file-format -rw-r--r-- root/root 349 2020-02-10 09:50 ./usr/share/doc-base/staden-io-lib-ztr-format drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/doc/staden-io-lib-utils/ -rw-r--r-- root/root 3266 2020-07-03 15:46 ./usr/share/doc/staden-io-lib-utils/Hash_File_Format -rw-r--r-- root/root 6817 2020-07-03 15:46 ./usr/share/doc/staden-io-lib-utils/README.md.gz -rw-r--r-- root/root 20980 2020-07-03 15:46 ./usr/share/doc/staden-io-lib-utils/ZTR_format.gz -rw-r--r-- root/root 3681 2020-07-16 11:49 ./usr/share/doc/staden-io-lib-utils/changelog.Debian.gz -rw-r--r-- root/root 29617 2020-07-03 15:46 ./usr/share/doc/staden-io-lib-utils/changelog.gz -rw-r--r-- root/root 7242 2020-07-16 10:10 ./usr/share/doc/staden-io-lib-utils/copyright drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/man/ drwxr-xr-x root/root 0 2020-07-16 11:49 ./usr/share/man/man1/ -rw-r--r-- root/root 380 2020-07-16 11:49 ./usr/share/man/man1/append_sff.1.gz -rw-r--r-- root/root 2950 2020-07-16 11:49 ./usr/share/man/man1/scramble.1.gz -rw-r--r-- root/root 358 2020-07-16 11:49 ./usr/share/man/man1/srf2fasta.1.gz -rw-r--r-- root/root 1321 2020-07-16 11:49 ./usr/share/man/man1/srf2fastq.1.gz -rw-r--r-- root/root 836 2020-07-16 11:49 ./usr/share/man/man1/srf_dump_all.1.gz -rw-r--r-- root/root 859 2020-07-16 11:49 ./usr/share/man/man1/srf_filter.1.gz -rw-r--r-- root/root 572 2020-07-16 11:49 ./usr/share/man/man1/srf_index_hash.1.gz -rw-r--r-- root/root 748 2020-07-16 11:49 ./usr/share/man/man1/srf_info.1.gz -rw-r--r-- root/root 804 2020-07-16 11:49 ./usr/share/man/man1/srf_list.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [570 B] Get:5 copy:/<>/apt_archive ./ Packages [650 B] Fetched 2183 B in 0s (94.7 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-messagepack-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian patchutils readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-messagepack-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdynaloader-functions-perl libemail-address-xs-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian patchutils readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 7321 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.32.3-1 [753 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b5 [38.4 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.19-1 [126 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4 [38.3 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 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http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.45-1 [84.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.12-1 [12.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libmetrics-any-perl all 0.06-1 [41.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libtest-metrics-any-perl all 0.01-2 [7060 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.77-3 [274 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.21-1 [12.1 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004002-1 [13.1 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1 [173 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.017+ds-1 [108 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.017+ds-1 [108 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b7 [8696 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010002-1 [338 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-3 [89.9 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.84.0 [1305 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7321 kB in 0s (32.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20498 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.32.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.32.3-1) ... Selecting previously unselected package gpg. 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Setting up libsereal-encoder-perl (4.017+ds-1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libmetrics-any-perl (0.06-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.3.4-3) ... Setting up libjson-maybexs-perl (1.004002-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up t1utils (1.41-4) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b5) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b7) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.017+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libemail-address-xs-perl (1.04-1+b2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010002-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libtest-metrics-any-perl (0.01-2) ... Setting up libio-async-perl (0.77-3) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libio-async-loop-epoll-perl (0.21-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.84.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-1) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 38056 Build-Time: 92 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 21 Job: staden-io-lib_1.14.13-2 Lintian: pass Machine Architecture: amd64 Package: staden-io-lib Package-Time: 125 Source-Version: 1.14.13-2 Space: 38056 Status: successful Version: 1.14.13-2 -------------------------------------------------------------------------------- Finished at 2020-07-17T09:22:04Z Build needed 00:02:05, 38056k disk space