sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | staden 2.0.0+b11-5 (armhf) Sun, 16 Mar 2025 10:28:53 +0000 | +==============================================================================+ Package: staden Version: 2.0.0+b11-5 Source Version: 2.0.0+b11-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-d2713156-ce79-43d3-88c0-0e4b2716259c' with '<>' I: NOTICE: Log filtering will replace 'build/staden-6fkLjk/resolver-dLE4XD' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-03-15-2005.14-F-2025-03-15-2005.14.pdiff [1207 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-03-16-0809.53-F-2025-03-15-2005.14.pdiff [53.1 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-03-15-2005.14-F-2025-03-15-2005.14.pdiff [1207 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-16-0809.53-F-2025-03-15-2005.14.pdiff [95.7 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-03-16-0809.53-F-2025-03-15-2005.14.pdiff [53.1 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-16-0809.53-F-2025-03-15-2005.14.pdiff [95.7 kB] Get:8 http://localhost:3142/debian unstable/main armhf Packages [9601 kB] Fetched 10.1 MB in 3s (3820 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-14 cpp-14-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu libasan8 libatomic1 libcc1-0 libgcc-14-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libquadmath0 libstdc++-14-dev libstdc++6 libtsan2 libubsan1 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 60.3 MB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:5 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:6 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:11 http://localhost:3142/debian unstable/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:13 http://localhost:3142/debian unstable/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:14 http://localhost:3142/debian unstable/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:15 http://localhost:3142/debian unstable/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:16 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:21 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Fetched 60.3 MB in 0s (207 MB/s) (Reading database ... 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Setting up cpp-14 (14.2.0-19) ... Setting up libubsan1:amd64 (14.2.0-19) ... Setting up libhwasan0:amd64 (14.2.0-19) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libcc1-0:amd64 (14.2.0-19) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up gcc-14 (14.2.0-19) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up g++-14 (14.2.0-19) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 0s (164 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/staden-6fkLjk/staden-2.0.0+b11' with '<>' I: NOTICE: Log filtering will replace 'build/staden-6fkLjk' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [876 B] Get:5 copy:/<>/apt_archive ./ Packages [919 B] Fetched 2404 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils comerr-dev:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian itcl3 itcl3:armhf itcl3-dev:armhf itk3 itk3:armhf itk3-dev:armhf iwidgets4 krb5-multidev:armhf libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libcrypt-dev:armhf libcrypt1:armhf libcurl3t64-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3t64:armhf libdebhelper-perl libelf1t64 libevent-2.1-7t64:armhf libexpat1 libexpat1:armhf libexpat1-dev:armhf libfakeroot libffi8:armhf libfile-stripnondeterminism-perl libfontconfig-dev:armhf libfontconfig1 libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype-dev:armhf libfreetype6 libfreetype6:armhf libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libgssrpc4t64:armhf libhogweed6t64:armhf libhtscodecs-dev:armhf libhtscodecs2:armhf libicu76 libidn2-0:armhf libidn2-dev:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf libldap-dev:armhf libldap2:armhf liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1t64 libncurses-dev:armhf libncurses6:armhf libncursesw6:armhf libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf libnghttp3-9:armhf libnghttp3-dev:armhf libngtcp2-16:armhf libngtcp2-crypto-gnutls-dev:armhf libngtcp2-crypto-gnutls8:armhf libngtcp2-dev:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpipeline1 libpkgconf3 libpng-dev:armhf libpng16-16t64 libpng16-16t64:armhf libpsl-dev:armhf libpsl5t64:armhf librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1-dev:armhf libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstaden-read-dev:armhf libstaden-read14t64:armhf libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtasn1-6:armhf libtasn1-6-dev:armhf libtcl8.6 libtcl8.6:armhf libtinfo6:armhf libtk8.6 libtk8.6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf libunistring5 libunistring5:armhf libuuid1:armhf libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxft-dev:armhf libxft2 libxft2:armhf libxml2 libxrender-dev:armhf libxrender1 libxrender1:armhf libxss-dev:armhf libxss1 libxss1:armhf libzstd-dev:armhf libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf pkgconf:armhf pkgconf-bin po-debconf sensible-utils tcl tcl-dev:armhf tcl8.6 tcl8.6-dev:armhf tk tk-dev:armhf tk8.6 tk8.6-dev:armhf tklib uuid-dev:armhf x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:armhf gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff itcl3-doc itcl3-doc:armhf itk3-doc itk3-doc:armhf iwidgets4-doc krb5-doc:armhf glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libcurl4-doc:armhf libidn-dev:armhf freetype2-doc:armhf gmp-doc:armhf libgmp10-doc:armhf libmpfr-dev:armhf dns-root-data:armhf gnutls-bin:armhf gnutls-doc:armhf krb5-user:armhf liblzma-doc:armhf ncurses-doc:armhf libnghttp2-doc:armhf p11-kit-doc:armhf libssl-doc:armhf libstdc++-14-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:armhf libx11-doc:armhf libxcb-doc:armhf libxext-doc:armhf m4-doc apparmor less www-browser libmail-box-perl tcl-doc:armhf tcl-tclreadline tcl8.6-doc:armhf tk-doc:armhf tk8.6-doc:armhf Recommended packages: curl | wget | lynx bzip2-doc:armhf ca-certificates:armhf libarchive-cpio-perl krb5-locales:armhf libldap-common:armhf libgpm2:armhf libpng-tools:armhf publicsuffix:armhf libsasl2-modules:armhf libtasn1-doc:armhf libltdl-dev libmail-sendmail-perl tcllib The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils comerr-dev:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian itcl3 itcl3:armhf itcl3-dev:armhf itk3 itk3:armhf itk3-dev:armhf iwidgets4 krb5-multidev:armhf libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libcrypt-dev:armhf libcrypt1:armhf libcurl3t64-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3t64:armhf libdebhelper-perl libelf1t64 libevent-2.1-7t64:armhf libexpat1 libexpat1:armhf libexpat1-dev:armhf libfakeroot libffi8:armhf libfile-stripnondeterminism-perl libfontconfig-dev:armhf libfontconfig1 libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype-dev:armhf libfreetype6 libfreetype6:armhf libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libgssrpc4t64:armhf libhogweed6t64:armhf libhtscodecs-dev:armhf libhtscodecs2:armhf libicu76 libidn2-0:armhf libidn2-dev:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf libldap-dev:armhf libldap2:armhf liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1t64 libncurses-dev:armhf libncurses6:armhf libncursesw6:armhf libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf libnghttp3-9:armhf libnghttp3-dev:armhf libngtcp2-16:armhf libngtcp2-crypto-gnutls-dev:armhf libngtcp2-crypto-gnutls8:armhf libngtcp2-dev:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpipeline1 libpkgconf3 libpng-dev:armhf libpng16-16t64 libpng16-16t64:armhf libpsl-dev:armhf libpsl5t64:armhf librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1-dev:armhf libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstaden-read-dev:armhf libstaden-read14t64:armhf libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtasn1-6:armhf libtasn1-6-dev:armhf libtcl8.6 libtcl8.6:armhf libtinfo6:armhf libtk8.6 libtk8.6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf libunistring5 libunistring5:armhf libuuid1:armhf libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxft-dev:armhf libxft2 libxft2:armhf libxml2 libxrender-dev:armhf libxrender1 libxrender1:armhf libxss-dev:armhf libxss1 libxss1:armhf libzstd-dev:armhf libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf pkgconf:armhf pkgconf-bin po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils tcl tcl-dev:armhf tcl8.6 tcl8.6-dev:armhf tk tk-dev:armhf tk8.6 tk8.6-dev:armhf tklib uuid-dev:armhf x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 131 MB of archives. After this operation, 467 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-2 [337 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-2 [109 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-2 [43.5 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.44-3 [1501 kB] Get:18 http://localhost:3142/debian unstable/main armhf gcc-14-base armhf 14.2.0-19 [49.4 kB] Get:19 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 14.2.0-19 [37.0 kB] Get:20 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.41-6 [2250 kB] Get:21 http://localhost:3142/debian unstable/main armhf libcrypt1 armhf 1:4.4.38-1 [95.6 kB] Get:22 http://localhost:3142/debian unstable/main armhf libcrypt-dev armhf 1:4.4.38-1 [125 kB] Get:23 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.41-6 [1327 kB] Get:24 http://localhost:3142/debian unstable/main armhf libcom-err2 armhf 1.47.2-1+b1 [23.6 kB] Get:25 http://localhost:3142/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2-1+b1 [55.4 kB] Get:26 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf-base amd64 14.2.0-12cross1 [48.5 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-14-arm-linux-gnueabihf amd64 14.2.0-12cross1 [10.4 MB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:14.2.0-1 [4856 B] Get:29 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-12cross1 [43.7 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.41-6cross2 [920 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 14.2.0-12cross1 [37.0 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 14.2.0-12cross1 [109 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 14.2.0-12cross1 [6948 B] Get:34 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 14.2.0-12cross1 [2568 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 14.2.0-12cross1 [559 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 14.2.0-12cross1 [1037 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-armhf-cross all 14.2.0-12cross1 [769 kB] Get:38 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf amd64 14.2.0-12cross1 [19.8 MB] Get:39 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:14.2.0-1 [1452 B] Get:40 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 6.12.17-1cross2 [2330 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.41-6cross2 [1323 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-armhf-cross all 14.2.0-12cross1 [2352 kB] Get:43 http://localhost:3142/debian unstable/main amd64 g++-14-arm-linux-gnueabihf amd64 14.2.0-12cross1 [11.4 MB] Get:44 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:14.2.0-1 [1208 B] Get:45 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B] Get:46 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:52 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:57 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:58 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:59 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:60 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37-1 [29.7 kB] Get:62 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37-1 [75.6 kB] Get:63 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:64 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:65 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.1 [318 kB] Get:66 http://localhost:3142/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB] Get:67 http://localhost:3142/debian unstable/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [934 kB] Get:68 http://localhost:3142/debian unstable/main armhf itcl3 armhf 3.4.4-3 [43.2 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:70 http://localhost:3142/debian unstable/main amd64 itcl3 amd64 3.4.4-3 [48.2 kB] Get:71 http://localhost:3142/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get:72 http://localhost:3142/debian unstable/main amd64 tcl8.6 amd64 8.6.16+dfsg-1 [121 kB] Get:73 http://localhost:3142/debian unstable/main armhf tcl8.6-dev armhf 8.6.16+dfsg-1 [947 kB] Get:74 http://localhost:3142/debian unstable/main amd64 tcl amd64 8.6.16 [4096 B] Get:75 http://localhost:3142/debian unstable/main armhf tcl-dev armhf 8.6.16 [6628 B] Get:76 http://localhost:3142/debian unstable/main armhf itcl3-dev armhf 3.4.4-3 [15.5 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.1 [391 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:90 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:93 http://localhost:3142/debian unstable/main amd64 itk3 amd64 3.4.2-5 [26.4 kB] Get:94 http://localhost:3142/debian unstable/main armhf libexpat1 armhf 2.7.0-1 [85.2 kB] Get:95 http://localhost:3142/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB] Get:96 http://localhost:3142/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-6 [35.0 kB] Get:97 http://localhost:3142/debian unstable/main armhf libpng16-16t64 armhf 1.6.47-1.1 [264 kB] Get:98 http://localhost:3142/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get:99 http://localhost:3142/debian unstable/main armhf libfontconfig1 armhf 2.15.0-2.1 [371 kB] Get:100 http://localhost:3142/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get:101 http://localhost:3142/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get:102 http://localhost:3142/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get:103 http://localhost:3142/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get:104 http://localhost:3142/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b4 [25.0 kB] Get:105 http://localhost:3142/debian unstable/main armhf libxft2 armhf 2.3.6-1+b4 [46.4 kB] Get:106 http://localhost:3142/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB] Get:107 http://localhost:3142/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b3 [16.4 kB] Get:108 http://localhost:3142/debian unstable/main armhf libtk8.6 armhf 8.6.16-1 [698 kB] Get:109 http://localhost:3142/debian unstable/main armhf itk3 armhf 3.4.2-5 [24.3 kB] Get:110 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:111 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:112 http://localhost:3142/debian unstable/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get:113 http://localhost:3142/debian unstable/main armhf libxau-dev armhf 1:1.0.11-1 [23.0 kB] Get:114 http://localhost:3142/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.5-1 [42.9 kB] Get:115 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:116 http://localhost:3142/debian unstable/main armhf libxcb1-dev armhf 1.17.0-2+b1 [180 kB] Get:117 http://localhost:3142/debian unstable/main armhf libx11-dev armhf 2:1.8.10-2 [825 kB] Get:118 http://localhost:3142/debian unstable/main armhf libxext-dev armhf 2:1.3.4-1+b3 [100 kB] Get:119 http://localhost:3142/debian unstable/main armhf libxss-dev armhf 1:1.2.3-1+b3 [22.2 kB] Get:120 http://localhost:3142/debian unstable/main armhf libexpat1-dev armhf 2.7.0-1 [142 kB] Get:121 http://localhost:3142/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b7 [294 kB] Get:122 http://localhost:3142/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get:123 http://localhost:3142/debian unstable/main armhf libpng-dev armhf 1.6.47-1.1 [349 kB] Get:124 http://localhost:3142/debian unstable/main armhf libfreetype-dev armhf 2.13.3+dfsg-1 [561 kB] Get:125 http://localhost:3142/debian unstable/main armhf libuuid1 armhf 2.40.4-5 [35.3 kB] Get:126 http://localhost:3142/debian unstable/main armhf uuid-dev armhf 2.40.4-5 [46.3 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:128 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:129 http://localhost:3142/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get:130 http://localhost:3142/debian unstable/main armhf libfontconfig-dev armhf 2.15.0-2.1 [396 kB] Get:131 http://localhost:3142/debian unstable/main armhf libfontconfig1-dev armhf 2.15.0-2.1 [269 kB] Get:132 http://localhost:3142/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1.1+b4 [33.0 kB] Get:133 http://localhost:3142/debian unstable/main armhf libxft-dev armhf 2.3.6-1+b4 [65.8 kB] Get:134 http://localhost:3142/debian unstable/main amd64 tk8.6 amd64 8.6.16-1 [69.6 kB] Get:135 http://localhost:3142/debian unstable/main armhf tk8.6-dev armhf 8.6.16-1 [726 kB] Get:136 http://localhost:3142/debian unstable/main amd64 tk amd64 8.6.16 [4136 B] Get:137 http://localhost:3142/debian unstable/main armhf tk-dev armhf 8.6.16 [3964 B] Get:138 http://localhost:3142/debian unstable/main armhf itk3-dev armhf 3.4.2-5 [5508 B] Get:139 http://localhost:3142/debian unstable/main amd64 iwidgets4 all 4.1.1-3 [194 kB] Get:140 http://localhost:3142/debian unstable/main armhf libkrb5support0 armhf 1.21.3-5 [30.4 kB] Get:141 http://localhost:3142/debian unstable/main armhf libk5crypto3 armhf 1.21.3-5 [76.0 kB] Get:142 http://localhost:3142/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get:143 http://localhost:3142/debian unstable/main armhf libzstd1 armhf 1.5.7+dfsg-1 [264 kB] Get:144 http://localhost:3142/debian unstable/main armhf libssl3t64 armhf 3.4.1-1 [1886 kB] Get:145 http://localhost:3142/debian unstable/main armhf libkrb5-3 armhf 1.21.3-5 [284 kB] Get:146 http://localhost:3142/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-5 [116 kB] Get:147 http://localhost:3142/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-5 [52.9 kB] Get:148 http://localhost:3142/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-5 [37.7 kB] Get:149 http://localhost:3142/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-5 [37.6 kB] Get:150 http://localhost:3142/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-5 [47.6 kB] Get:151 http://localhost:3142/debian unstable/main armhf krb5-multidev armhf 1.21.3-5 [126 kB] Get:152 http://localhost:3142/debian unstable/main armhf libasan8 armhf 14.2.0-19 [2583 kB] Get:153 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 14.2.0-19 [7200 B] Get:154 http://localhost:3142/debian unstable/main armhf libgmp10 armhf 2:6.3.0+dfsg-3 [512 kB] Get:155 http://localhost:3142/debian unstable/main armhf libnettle8t64 armhf 3.10.1-1 [312 kB] Get:156 http://localhost:3142/debian unstable/main armhf libhogweed6t64 armhf 3.10.1-1 [322 kB] Get:157 http://localhost:3142/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB] Get:158 http://localhost:3142/debian unstable/main armhf libidn2-0 armhf 2.3.8-2 [105 kB] Get:159 http://localhost:3142/debian unstable/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Get:160 http://localhost:3142/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get:161 http://localhost:3142/debian unstable/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Get:162 http://localhost:3142/debian unstable/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB] Get:163 http://localhost:3142/debian unstable/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [602 kB] Get:164 http://localhost:3142/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-9 [18.5 kB] Get:165 http://localhost:3142/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-9 [50.4 kB] Get:166 http://localhost:3142/debian unstable/main armhf libldap2 armhf 2.6.9+dfsg-2 [168 kB] Get:167 http://localhost:3142/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get:168 http://localhost:3142/debian unstable/main armhf libnghttp3-9 armhf 1.8.0-1 [59.9 kB] Get:169 http://localhost:3142/debian unstable/main armhf libngtcp2-16 armhf 1.11.0-1 [127 kB] Get:170 http://localhost:3142/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.11.0-1 [26.7 kB] Get:171 http://localhost:3142/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get:172 http://localhost:3142/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get:173 http://localhost:3142/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get:174 http://localhost:3142/debian unstable/main armhf libcurl3t64-gnutls armhf 8.12.1-3 [316 kB] Get:175 http://localhost:3142/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get:176 http://localhost:3142/debian unstable/main armhf libunbound8 armhf 1.22.0-1+b1 [539 kB] Get:177 http://localhost:3142/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.9-2 [446 kB] Get:178 http://localhost:3142/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.9-2 [446 kB] Get:179 http://localhost:3142/debian unstable/main armhf libidn2-dev armhf 2.3.8-2 [97.6 kB] Get:180 http://localhost:3142/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB] Get:181 http://localhost:3142/debian unstable/main armhf libtasn1-6-dev armhf 4.20.0-2 [93.4 kB] Get:182 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 14.2.0-19 [607 kB] Get:183 http://localhost:3142/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get:184 http://localhost:3142/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get:185 http://localhost:3142/debian unstable/main armhf nettle-dev armhf 3.10.1-1 [1314 kB] Get:186 http://localhost:3142/debian unstable/main armhf libgnutls28-dev armhf 3.8.9-2 [1337 kB] Get:187 http://localhost:3142/debian unstable/main armhf libkrb5-dev armhf 1.21.3-5 [16.1 kB] Get:188 http://localhost:3142/debian unstable/main armhf libldap-dev armhf 2.6.9+dfsg-2 [286 kB] Get:189 http://localhost:3142/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get:190 http://localhost:3142/debian unstable/main armhf libnghttp3-dev armhf 1.8.0-1 [84.8 kB] Get:191 http://localhost:3142/debian unstable/main armhf libngtcp2-crypto-gnutls-dev armhf 1.11.0-1 [32.2 kB] Get:192 http://localhost:3142/debian unstable/main armhf libngtcp2-dev armhf 1.11.0-1 [178 kB] Get:193 http://localhost:3142/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get:194 http://localhost:3142/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get:195 http://localhost:3142/debian unstable/main armhf libssl-dev armhf 3.4.1-1 [2429 kB] Get:196 http://localhost:3142/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get:197 http://localhost:3142/debian unstable/main armhf libzstd-dev armhf 1.5.7+dfsg-1 [333 kB] Get:198 http://localhost:3142/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.12.1-3 [441 kB] Get:199 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 14.2.0-19 [111 kB] Get:200 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 14.2.0-19 [1040 kB] Get:201 http://localhost:3142/debian unstable/main armhf libgcc-14-dev armhf 14.2.0-19 [768 kB] Get:202 http://localhost:3142/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-2 [63.2 kB] Get:203 http://localhost:3142/debian unstable/main armhf libhtscodecs-dev armhf 1.6.1-2 [2964 kB] Get:204 http://localhost:3142/debian unstable/main armhf liblzma5 armhf 5.6.4-1 [267 kB] Get:205 http://localhost:3142/debian unstable/main armhf liblzma-dev armhf 5.6.4-1 [311 kB] Get:206 http://localhost:3142/debian unstable/main armhf libtinfo6 armhf 6.5+20250216-2 [333 kB] Get:207 http://localhost:3142/debian unstable/main armhf libncurses6 armhf 6.5+20250216-2 [82.8 kB] Get:208 http://localhost:3142/debian unstable/main armhf libncursesw6 armhf 6.5+20250216-2 [110 kB] Get:209 http://localhost:3142/debian unstable/main armhf libncurses-dev armhf 6.5+20250216-2 [312 kB] Get:210 http://localhost:3142/debian unstable/main armhf libstaden-read14t64 armhf 1.15.0-1.1+b2 [234 kB] Get:211 http://localhost:3142/debian unstable/main armhf libstaden-read-dev armhf 1.15.0-1.1+b2 [312 kB] Get:212 http://localhost:3142/debian unstable/main armhf libstdc++-14-dev armhf 14.2.0-19 [2380 kB] Get:213 http://localhost:3142/debian unstable/main amd64 tklib all 0.9-1 [1749 kB] Preconfiguring packages ... Fetched 131 MB in 3s (50.0 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12839 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-2_amd64.deb ... Unpacking libmagic-mgc (1:5.46-2) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-2_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-2) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-2_amd64.deb ... Unpacking file (1:5.46-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up gcc-14-arm-linux-gnueabihf-base:amd64 (14.2.0-12cross1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up gcc-14-cross-base (14.2.0-12cross1) ... Setting up file (1:5.46-2) ... Setting up libatomic1-armhf-cross (14.2.0-12cross1) ... Setting up libfakeroot:amd64 (1.37-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up fakeroot (1.37-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up linux-libc-dev-armhf-cross (6.12.17-1cross2) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libicu76:amd64 (76.1-3) ... Setting up binutils-arm-linux-gnueabihf (2.44-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up cpp-14-arm-linux-gnueabihf (14.2.0-12cross1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14.2.0-12cross1) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up tcl8.6 (8.6.16+dfsg-1) ... Setting up gettext (0.23.1-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-4) ... Setting up libgcc-s1-armhf-cross (14.2.0-12cross1) ... Setting up fontconfig-config (2.15.0-2.1) ... Setting up libc6-dev-armhf-cross (2.41-6cross2) ... Setting up itcl3:amd64 (3.4.4-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14.2.0-12cross1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up libubsan1-armhf-cross (14.2.0-12cross1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up tcl (8.6.16) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.1) ... Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up libasan8-armhf-cross (14.2.0-12cross1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up itk3:amd64 (3.4.2-5) ... Setting up iwidgets4 (4.1.1-3) ... Setting up libgcc-14-dev-armhf-cross (14.2.0-12cross1) ... Setting up libstdc++-14-dev-armhf-cross (14.2.0-12cross1) ... Setting up tk8.6 (8.6.16-1) ... Setting up gcc-14-arm-linux-gnueabihf (14.2.0-12cross1) ... Setting up debhelper (13.24.1) ... Setting up tk (8.6.16) ... Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up g++-14-arm-linux-gnueabihf (14.2.0-12cross1) ... Setting up tklib (0.9-1) ... Setting up g++-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (14.2.0-19) ... Setting up libc6:armhf (2.41-6) ... Setting up libnghttp3-9:armhf (1.8.0-1) ... 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Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:armhf (1:4.4.38-1) ... Setting up libcom-err2:armhf (1.47.2-1+b1) ... Setting up libngtcp2-dev:armhf (1.11.0-1) ... Setting up libgomp1:armhf (14.2.0-19) ... Setting up libkrb5support0:armhf (1.21.3-5) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-9) ... Setting up libhtscodecs-dev:armhf (1.6.1-2) ... Setting up libxdmcp-dev:armhf (1:1.1.5-1) ... Setting up libnettle8t64:armhf (3.10.1-1) ... Setting up libgmp10:armhf (2:6.3.0+dfsg-3) ... Setting up libncurses6:armhf (6.5+20250216-2) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libunistring5:armhf (1.3-1) ... Setting up libpng16-16t64:armhf (1.6.47-1.1) ... Setting up libatomic1:armhf (14.2.0-19) ... Setting up libuuid1:armhf (2.40.4-5) ... Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... Setting up libncursesw6:armhf (6.5+20250216-2) ... Setting up libk5crypto3:armhf (1.21.3-5) ... Setting up liblzma-dev:armhf (5.6.4-1) ... Setting up libubsan1:armhf (14.2.0-19) ... Setting up libhogweed6t64:armhf (3.10.1-1) ... Setting up libcrypt-dev:armhf (1:4.4.38-1) ... Setting up libc6-dev:armhf (2.41-6) ... Setting up libx11-6:armhf (2:1.8.10-2) ... Setting up libgcc-14-dev:armhf (14.2.0-19) ... Setting up libstdc++-14-dev:armhf (14.2.0-19) ... Setting up libbrotli-dev:armhf (1.1.0-2+b7) ... Setting up libp11-kit-dev:armhf (0.25.5-3) ... Setting up libbz2-dev:armhf (1.0.8-6) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up libncurses-dev:armhf (6.5+20250216-2) ... Setting up libxcb1-dev:armhf (1.17.0-2+b1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b4) ... Setting up libssl3t64:armhf (3.4.1-1) ... Setting up itcl3:armhf (3.4.4-3) ... Setting up libx11-dev:armhf (2:1.8.10-2) ... Setting up libxext6:armhf (2:1.3.4-1+b3) ... Setting up libidn2-0:armhf (2.3.8-2) ... Setting up libunbound8:armhf (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:armhf (2.7.0-1) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up uuid-dev:armhf (2.40.4-5) ... Setting up comerr-dev:armhf (2.1-1.47.2-1+b1) ... Setting up libssl-dev:armhf (3.4.1-1) ... Setting up libidn2-dev:armhf (2.3.8-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-9) ... Setting up libxext-dev:armhf (2:1.3.4-1+b3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libkrb5-3:armhf (1.21.3-5) ... Setting up libxss1:armhf (1:1.2.3-1+b3) ... Setting up libfontconfig1:armhf (2.15.0-2.1) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1.1+b4) ... Setting up libldap2:armhf (2.6.9+dfsg-2) ... Setting up libgnutls30t64:armhf (3.8.9-2) ... Setting up libgnutls-openssl27t64:armhf (3.8.9-2) ... Setting up libxft2:armhf (2.3.6-1+b4) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Setting up nettle-dev:armhf (3.10.1-1) ... Setting up tcl8.6-dev:armhf (8.6.16+dfsg-1) ... Setting up libtk8.6:armhf (8.6.16-1) ... Setting up libpng-dev:armhf (1.6.47-1.1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libxss-dev:armhf (1:1.2.3-1+b3) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libfreetype-dev:armhf (2.13.3+dfsg-1) ... Setting up libgnutls-dane0t64:armhf (3.8.9-2) ... Setting up itk3:armhf (3.4.2-5) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:armhf (2.6.9+dfsg-2) ... Setting up libgssapi-krb5-2:armhf (1.21.3-5) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up tcl-dev:armhf (8.6.16) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.11.0-1) ... Setting up libgnutls28-dev:armhf (3.8.9-2) ... Setting up itcl3-dev:armhf (3.4.4-3) ... Setting up libfontconfig-dev:armhf (2.15.0-2.1) ... Setting up libcurl3t64-gnutls:armhf (8.12.1-3) ... Setting up libngtcp2-crypto-gnutls-dev:armhf (1.11.0-1) ... Setting up libgssrpc4t64:armhf (1.21.3-5) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-5) ... Setting up libxft-dev:armhf (2.3.6-1+b4) ... Setting up libfontconfig1-dev:armhf (2.15.0-2.1) ... Setting up libkdb5-10t64:armhf (1.21.3-5) ... Setting up libstaden-read14t64:armhf (1.15.0-1.1+b2) ... Setting up tk8.6-dev:armhf (8.6.16-1) ... Setting up libkadm5srv-mit12:armhf (1.21.3-5) ... Setting up krb5-multidev:armhf (1.21.3-5) ... Setting up itk3-dev:armhf (3.4.2-5) ... Setting up libkrb5-dev:armhf (1.21.3-5) ... Setting up tk-dev:armhf (8.6.16) ... Setting up libcurl4-gnutls-dev:armhf (8.12.1-3) ... Setting up libstaden-read-dev:armhf (1.15.0-1.1+b2) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-armhf-cross_14.2.0-12cross1 libstdc++6_14.2.0-19 libstdc++6-armhf-cross_14.2.0-12cross1 linux-libc-dev_6.12.17-1 Package versions: apt_2.9.33 apt-utils_2.9.33 autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.7 base-passwd_3.6.6 bash_5.2.37-1.1+b1 binutils_2.44-3 binutils-arm-linux-gnueabihf_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-arm-linux-gnueabihf_14.2.0-12cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-arm-linux-gnueabihf_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37-1 file_1:5.46-2 findutils_4.10.0-3 fontconfig-config_2.15.0-2.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-arm-linux-gnueabihf_14.2.0-12cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-arm-linux-gnueabihf_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-arm-linux-gnueabihf_14.2.0-12cross1 gcc-14-arm-linux-gnueabihf-base_14.2.0-12cross1 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-12cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-arm-linux-gnueabihf_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 itcl3_3.4.4-3 itcl3-dev_3.4.4-3 itk3_3.4.2-5 itk3-dev_3.4.2-5 iwidgets4_4.1.1-3 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_2.9.33 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-armhf-cross_14.2.0-12cross1 libatomic1_14.2.0-19 libatomic1-armhf-cross_14.2.0-12cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-armhf-cross_2.41-6cross2 libc6-dev_2.41-6 libc6-dev-armhf-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-2 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.0-1 libexpat1-dev_2.7.0-1 libfakeroot_1.37-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig-dev_2.15.0-2.1 libfontconfig1_2.15.0-2.1 libfontconfig1-dev_2.15.0-2.1 libfreetype-dev_2.13.3+dfsg-1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-armhf-cross_14.2.0-12cross1 libgcc-s1_14.2.0-19 libgcc-s1-armhf-cross_14.2.0-12cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-armhf-cross_14.2.0-12cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhtscodecs-dev_1.6.1-2 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libicu76_76.1-3 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma-dev_5.6.4-1 liblzma5_5.6.4-1 libmagic-mgc_1:5.46-2 libmagic1t64_1:5.46-2 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpng-dev_1.6.47-1.1 libpng16-16t64_1.6.47-1.1 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.5.5-2+b1 libselinux1_3.8-4 libsemanage-common_3.8-1 libsemanage2_3.8-1+b1 libsepol2_3.8-1 libsframe1_2.44-3 libsmartcols1_2.40.4-5 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstaden-read-dev_1.15.0-1.1+b2 libstaden-read14t64_1.15.0-1.1+b2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-armhf-cross_14.2.0-12cross1 libstdc++6_14.2.0-19 libstdc++6-armhf-cross_14.2.0-12cross1 libsystemd0_257.4-3 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtcl8.6_8.6.16+dfsg-1 libtinfo6_6.5+20250216-2 libtk8.6_8.6.16-1 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-armhf-cross_14.2.0-12cross1 libuchardet0_0.0.8-1+b2 libudev1_257.4-3 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libx11-6_2:1.8.10-2 libx11-data_2:1.8.10-2 libx11-dev_2:1.8.10-2 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxft-dev_2.3.6-1+b4 libxft2_2.3.6-1+b4 libxml2_2.12.7+dfsg+really2.9.14-0.3+b1 libxrender-dev_1:0.9.10-1.1+b4 libxrender1_1:0.9.10-1.1+b4 libxss-dev_1:1.2.3-1+b3 libxss1_1:1.2.3-1+b3 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.17-1 linux-libc-dev-armhf-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.40.4-5 login.defs_1:4.17.3-1 m4_1.4.19-7 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mount_2.40.4-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-1 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6+b1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tcl_8.6.16 tcl-dev_8.6.16 tcl8.6_8.6.16+dfsg-1 tcl8.6-dev_8.6.16+dfsg-1 tk_8.6.16 tk-dev_8.6.16 tk8.6_8.6.16-1 tk8.6-dev_8.6.16-1 tklib_0.9-1 tzdata_2025a-2 util-linux_2.40.4-5 uuid-dev_2.40.4-5 x11-common_1:7.7+24 x11proto-core-dev_2024.1-1 x11proto-dev_2024.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden Binary: staden, staden-common Architecture: any all Version: 2.0.0+b11-5 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://sourceforge.net/projects/staden/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/staden Vcs-Git: https://salsa.debian.org/med-team/staden.git Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev Package-List: staden deb science optional arch=any staden-common deb science optional arch=all Checksums-Sha1: a51f0a004961511734a05fd54d8b2b1b0cfd6e32 4754651 staden_2.0.0+b11.orig.tar.gz a770dce5dc8fb2dad9e1e8a8a85ec4be8ef3b8ac 16800 staden_2.0.0+b11-5.debian.tar.xz Checksums-Sha256: cd7ee17626c25bc845ebd3f6311b5a538815fb73a0dfef2393001bf579ac9649 4754651 staden_2.0.0+b11.orig.tar.gz 34008f109d1a4c97659213035fe72c0059d9e4caa80b65d6e972e0055fc32ecf 16800 staden_2.0.0+b11-5.debian.tar.xz Files: ae59565ded12242c4c2728fbf2e185a7 4754651 staden_2.0.0+b11.orig.tar.gz 532a8c853e97a38ddbc4e95e93525f66 16800 staden_2.0.0+b11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXxuwcACgkQPCZ2P2xn 5uI/qw//dVWXAscRvuRAcyK8UpglQNEVAJLZJg7DO+832OyOfd84naHsh610D6yP xNL4dOhyV6K+2fm62wF72Hx9AY/vyXRMaiEirnxm4NskiNkXU5lN51hPnyMeEAz+ yTR4K65U7Dw7TchgIZ2YZ5DSk6k2Yxcr3hCSOBmvr9RRm3YuWVMelCo1uuPyTlCj S4NZ2wY+afWXvp4vDb0KUed8BeuX1XEomACWUJpXG8W6d5ZULPXN9ShRCuuDczoL aQ3IQC+TeKSU03x6jnJEyyEpRcUBv7F/+rauAQ+TGZGKqcc5746UkHhQQQaGi4aa QTU9z66CoQ/EQysdx+oMXJYgiepwIdjRhmINeOD25c62oAMktmRzgQZs3O+YYuEo ao/HxNR3/o1DACvXbM47Qhe7OSsz/hlBFIiiuLQm9/3Kz6NXnxbN/dKbBA1MZawZ Cijb6yOPJu4b0UqTv8khNnCK2EEM0pztLM61ntOhgS1VJfi2xzMDPAMJ/Vie7QRV snwTGa+vGINPhVMsCwXPzUeXz4/Dj52j3JV5Ty8dP65tuF/Po9OjTRkMDklFyGcz a0Gw/jsCAwqPVwvpli1b4jwGe0NqROF7SmLY+35+FBc3glZC2TShD6QzfYiXgNWY zFtUxsljJhcCD1htF4+6TIO2D8v7fijtaFRPlXkCbI3Wl9zBpNg= =Q0m3 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./staden_2.0.0+b11-5.dsc: unsupported subcommand dpkg-source: info: extracting staden in /<> dpkg-source: info: unpacking staden_2.0.0+b11.orig.tar.gz dpkg-source: info: unpacking staden_2.0.0+b11-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_help_menus_work.patch dpkg-source: info: applying fix_tcl_path.patch dpkg-source: info: applying fix_awk.patch dpkg-source: info: applying enable_setting_stadenroot.patch dpkg-source: info: applying include_xalloc.patch dpkg-source: info: applying use_mkstemp_instead_of_tmpnam.patch dpkg-source: info: applying fix_implicit_declaration.patch dpkg-source: info: applying autoconfig.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.40ARGNccJw/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-d2713156-ce79-43d3-88c0-0e4b2716259c SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' make spotless || true make[2]: Entering directory '/<>' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/<>' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ --with-itcl=/usr/lib/tcltk/arm-linux-gnueabihf \ --with-itk=/usr/lib/tcltk/arm-linux-gnueabihf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --with-itcl=/usr/lib/tcltk/arm-linux-gnueabihf --with-itk=/usr/lib/tcltk/arm-linux-gnueabihf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.12.1 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for arm-linux-gnueabihf-gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... no checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... no checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.1.0-31-amd64 checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... long long checking for struct dirent64... no checking for struct stat64... no checking for open64... yes checking for lseek64... yes checking for off64_t... no checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/arm-linux-gnueabihf/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/arm-linux-gnueabihf/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/arm-linux-gnueabihf/itcl3.4 Itk: /usr/lib/tcltk/arm-linux-gnueabihf/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc all make[2]: Entering directory '/<>/Misc' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o crash.o -c crash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o date.o -c date.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o files.o -c files.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o find.o -c find.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o shell.o -c shell.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strings.o -c strings.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o error.o -c error.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array.o -c array.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o locks.o -c locks.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c parse_db.c: In function ‘parse_entry’: parse_db.c:234:66: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from parse_db.c:19: In function ‘sprintf’, inlined from ‘parse_entry’ at parse_db.c:234:7: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c mkdir -p /<>/lib 2>/dev/null touch /<>/lib/.dir arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils all make[2]: Entering directory '/<>/tk_utils' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c tkTraceDisp.c: In function ‘trace_draw_numbers’: tkTraceDisp.c:746:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from tkTraceDisp.c:2: In function ‘sprintf’, inlined from ‘trace_draw_numbers’ at tkTraceDisp.c:746:6: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c capture.c: In function ‘tcl_capture’: capture.c:53:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils all make[2]: Entering directory '/<>/text_utils' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc make[2]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/<>/seq_utils' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c renz_utils.c: In function ‘SetREnzColour’: renz_utils.c:1049:35: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from renz_utils.c:3: In function ‘sprintf’, inlined from ‘SetREnzColour’ at renz_utils.c:1049:5: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c sequence_formats.c: In function ‘get_embl_format_seq’: sequence_formats.c:729:29: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function ‘add_feat’: sequence_formats.c:481:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o edge.o -c edge.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libseq_utils.so align.o align_lib_old.o align_ss.o align_ss2.o align_sv.o dna_utils.o genetic_code.o renz_utils.o sequence_formats.o scramble.o base_comp.o open_reading_frames.o edge.o search_utils.o align_lib.o read_matrix.o filter_words.o -ltext_utils -lmisc -lm make[2]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib all make[2]: Entering directory '/<>/mutlib' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o basecall.o -c basecall.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller.o -c caller.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_snr.o -c caller_snr.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_base.o -c caller_base.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_level.o -c caller_level.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dnatable.o -c dnatable.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o muttag.o -c muttag.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag.o -c mutationtag.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag_utils.o -c mutationtag_utils.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o pathutil.o -c pathutil.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o peakcall.o -c peakcall.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o stringlist.o -c stringlist.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tagarray.o -c tagarray.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trace.o -c trace.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o validate.o -c validate.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_align_lib.o -c sp_align_lib.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_alignment.o -c sp_alignment.cpp sp_alignment.cpp: In function ‘void sp::store_hashn(Hash*)’: sp_alignment.cpp:754:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_hash_lib.o -c sp_hash_lib.cpp sp_hash_lib.cpp: In function ‘int sp::hash_word8n(char*, int*, int, int, short unsigned int*)’: sp_hash_lib.cpp:57:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 57 | register int i; | ^ sp_hash_lib.cpp:58:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:58:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:58:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:59:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int unsigned short luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq8n(char*, int*, int, int)’: sp_hash_lib.cpp:99:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘int sp::hash_word4n(char*, int*, int, int, unsigned char*)’: sp_hash_lib.cpp:156:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 156 | register int i; | ^ sp_hash_lib.cpp:157:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:157:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:157:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:158:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 158 | register char unsigned luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq4n(char*, int*, int, int)’: sp_hash_lib.cpp:197:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘void sp::remdup(int*, int*, int*, int*)’: sp_hash_lib.cpp:411:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 411 | register int i; | ^ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_matrix.o -c sp_matrix.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff.o -c tracediff.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_helper.o -c tracediff_helper.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_mutations.o -c tracediff_mutations.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_parameters.o -c tracediff_parameters.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_validate.o -c tracediff_validate.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign.o -c tracealign.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_cache.o -c tracealign_cache.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_helper.o -c tracealign_helper.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_interpolate.o -c tracealign_interpolate.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_preprocess.o -c tracealign_preprocess.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_validate.o -c tracealign_validate.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan.o -c mutscan.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_helper.o -c mutscan_helper.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_validate.o -c mutscan_validate.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_analysis.o -c mutscan_analysis.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_preprocess.o -c mutscan_preprocess.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_parameters.o -c mutscan_parameters.cpp cp /<>/./mutlib/mutlib.def 2>&- make[2]: [/<>/./mutlib/Makefile:81: /<>/lib/libmutlib.so] Error 1 (ignored) arm-linux-gnueabihf-g++ -shared -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmutlib.so align.o basecall.o caller.o caller_snr.o caller_base.o caller_level.o dnatable.o muttag.o mutationtag.o mutationtag_utils.o pathutil.o peakcall.o stringlist.o tagarray.o trace.o validate.o read_matrix.o sp_align_lib.o sp_alignment.o sp_hash_lib.o sp_matrix.o tracediff.o tracediff_helper.o tracediff_mutations.o tracediff_parameters.o tracediff_validate.o tracealign.o tracealign_cache.o tracealign_helper.o tracealign_interpolate.o tracealign_preprocess.o tracealign_validate.o mutscan.o mutscan_helper.o mutscan_validate.o mutscan_analysis.o mutscan_preprocess.o mutscan_parameters.o -lseq_utils -ltk_utils -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm make[2]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi all make[2]: Entering directory '/<>/abi' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o abiIO.o -c abiIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf all make[2]: Entering directory '/<>/alf' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./alf -I/<>/./Misc -I/<> -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c alfsplit.c: In function ‘main’: alfsplit.c:347:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘readIndexEntry’: alfsplit.c:129:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘main’: alfsplit.c:312:29: warning: ‘%s’ directive writing up to 2559 bytes into a region of size 25 [-Wformat-overflow=] 312 | sprintf (fname,"%sALF",name[i]) ; | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from alfsplit.c:30: In function ‘sprintf’, inlined from ‘main’ at alfsplit.c:312:6: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 4 and 2563 bytes into a destination of size 25 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g all make[2]: Entering directory '/<>/g' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc make[2]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev all make[2]: Entering directory '/<>/trev' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 all make[2]: Entering directory '/<>/primer3' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src all make[2]: Entering directory '/<>/primer3/src' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c primer3_main.c: In function ‘pr_safe_malloc’: primer3_main.c:520:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c: In function ‘boulder_print_oligos’: primer3_main.c:416:32: warning: ‘%d’ directive writing between 1 and 8 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 53687093] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from primer3_main.c:7: In function ‘sprintf’, inlined from ‘boulder_print_oligos’ at primer3_main.c:416:7: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 10 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function ‘main’: primer3_main.c:234:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function ‘boulder_print_pairs’, inlined from ‘main’ at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function ‘sprintf’, inlined from ‘boulder_print_pairs’ at primer3_main.c:234:7, inlined from ‘main’ at primer3_main.c:109:3: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 all make[2]: Entering directory '/<>/gap4' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-local.o -c gap-local.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-remote.o -c gap-remote.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-if.o -c gap-if.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-init.o -c gap-init.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-dbstruct.o -c gap-dbstruct.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-create.o -c gap-create.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-io.o -c gap-io.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO1.o -c IO1.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io-reg.o -c io-reg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c actf.c: In function ‘actf_lock’: actf.c:246:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | write(fd, db_path, strlen(db_path)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO2.o -c IO2.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o seqInfo.o -c seqInfo.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o parse_ft.o -c parse_ft.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO3.o -c IO3.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_utils.o -c io_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_handle.o -c io_handle.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-tcl.o -c gap-tcl.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap_cmds.o -c newgap_cmds.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o bubbl3.o -c bubbl3.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dbcheck.o -c dbcheck.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clones.o -c clones.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o extract.o -c extract.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o preass.o -c preass.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list.o -c list.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reactions.o -c reactions.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o probe.o -c probe.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template.o -c template.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘template_callback’: template_display.c:2354:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 2354 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, t->frame, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from template_display.c:2: In function ‘sprintf’, inlined from ‘template_callback’ at template_display.c:2354:3: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ruler_display.o -c ruler_display.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash.o -c hash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_array.o -c gap_array.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o show_relationships.o -c show_relationships.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_assemble.o -c auto_assemble.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c readpair.c: In function ‘readpair_obj_func’: readpair.c:175:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 989 and 999 [-Wformat-overflow=] 175 | sprintf(cmd, "CreateTemplateDisplay %d {%s}", | ^~ 176 | *handle, c_list); | ~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from readpair.c:18: In function ‘sprintf’, inlined from ‘readpair_obj_func’ at readpair.c:175:3: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1060 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o complement.o -c complement.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dstrand.o -c dstrand.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo_sel.o -c oligo_sel.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o alter_rel.o -c alter_rel.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stop_codon.o -c stop_codon.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o assemble_direct.o -c assemble_direct.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU2.o -c tagU2.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o mess.o -c mess.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db.o -c copy_db.c copy_db.c: In function ‘copy_read_name’: copy_db.c:118:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 118 | sprintf(num, "#%d", iter++); | ^~ copy_db.c:118:30: note: directive argument in the range [1, 2147483646] 118 | sprintf(num, "#%d", iter++); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from copy_db.c:1: In function ‘sprintf’, inlined from ‘copy_read_name’ at copy_db.c:118:3: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_order.o -c contig_order.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clip.o -c clip.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notes.o -c notes.c notes.c: In function ‘time_t2str’: notes.c:829:21: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 829 | sprintf(buf, "%s (%ld)", buf2, (long)t); | ^~ notes.c:829:18: note: using the range [-2147483648, 2147483647] for directive argument 829 | sprintf(buf, "%s (%ld)", buf2, (long)t); | ^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from notes.c:11: In function ‘sprintf’, inlined from ‘time_t2str’ at notes.c:829:5: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 5 and 1038 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_display.o -c consistency_display.c consistency_display.c: In function ‘consistency_callback’: consistency_display.c:883:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 883 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, c->frame, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from consistency_display.c:1: In function ‘sprintf’, inlined from ‘consistency_callback’ at consistency_display.c:883:3: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_canvas_box.o -c consistency_canvas_box.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o confidence_graph.o -c confidence_graph.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reading_coverage.o -c reading_coverage.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair_coverage.o -c readpair_coverage.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o strand_coverage.o -c strand_coverage.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_fragments.o -c find_fragments.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o vseqs.o -c vseqs.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o legacy_f2c.o -c legacy_f2c.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o f2c.o -c f2c.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdUtils.o -c tkEdUtils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edInterface.o -c edInterface.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edUtils2.o -c edUtils2.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU1.o -c tagU1.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o undo.o -c undo.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edExtend.o -c edExtend.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edCommands.o -c edCommands.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edMutations.o -c edMutations.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagEditor.o -c tagEditor.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o searchUtils.o -c searchUtils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:281:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:281:18: note: assuming directive output of 12 bytes 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:281:5: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_cons.o -c tman_cons.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_diff.o -c tman_diff.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contigEditor.o -c contigEditor.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o join.o -c join.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo.o -c oligo.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap.so -L/<>/lib gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o IO2.o seqInfo.o parse_ft.o IO3.o io_utils.o io_handle.o gap-tcl.o tk-io-reg.o gap_cli_arg.o gap_globals.o newgap_cmds.o init.o consen.o gap_hash.o qual.o qualIO.o bubbl3.o tagdb.o notedb.o active_tags.o dbcheck.o clones.o extract.o preass.o list.o reactions.o probe.o template.o template_display.o ruler_display.o gap_canvas_box.o hash.o gap_array.o show_relationships.o fij.o hash_lib.o do_fij.o auto_assemble.o dis_readings.o find_repeats.o break_contig.o quality_plot.o readpair.o contig_selector.o complement.o cs-object.o list_proc.o dstrand.o oligo_sel.o primlib.o alter_rel.o restriction_enzymes.o stop_codon.o assemble_direct.o check_assembly.o tagU2.o mess.o find_oligo.o copy_db.o contig_order.o clip.o notes.o consistency_display.o consistency_canvas_box.o confidence_graph.o reading_coverage.o readpair_coverage.o strand_coverage.o find_fragments.o vseqs.o legacy_f2c.o f2c.o shuffle_pads.o auto_break.o tkEditor.o tkEdNames.o tkEdUtils.o edInterface.o edUtils2.o tagU1.o undo.o edExtend.o edCommands.o edMutations.o tagEditor.o searchUtils.o tman_interface.o tman_display.o tman_cons.o tman_diff.o contigEditor.o join.o oligo.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltk_utils -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lg -lmutlib -lmisc -lprimer3 -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db_main.o -c copy_db_main.c copy_db_main.c: In function ‘main’: copy_db_main.c:86:9: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | scanf("%c", &ans); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o text-io-reg.o -c text-io-reg.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o copy_db gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o copy_db.o copy_db_main.o text-io-reg.o io_utils.o io_handle.o -lg -ltext_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish all make[2]: Entering directory '/<>/prefinish' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish.o -c finish.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_hash.o -c finish_hash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_long.o -c finish_long.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_main.o -c finish_main.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_utils.o -c finish_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_walk.o -c finish_walk.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_reverse.o -c finish_reverse.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_filter.o -c finish_filter.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_pcr.o -c finish_pcr.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dust.o -c dust.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprefinish.so finish.o finish_hash.o finish_long.o finish_main.o finish_utils.o finish_walk.o finish_reverse.o finish_filter.o finish_pcr.o dust.o -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap -lprimer3 arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o insert_size_dist.o -c insert_size_dist.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o insert_size_dist insert_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_size_dist.o -c read_size_dist.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_size_dist read_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_conf_dist.o -c read_conf_dist.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_conf_dist read_conf_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo all make[2]: Entering directory '/<>/haplo' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_tcl.o -c haplo_tcl.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_snps.o -c haplo_snps.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_split.o -c haplo_split.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_cons.o -c haplo_cons.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libhaplo.so haplo_tcl.o haplo_snps.o haplo_split.o haplo_cons.o -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba all make[2]: Entering directory '/<>/eba' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o qual.o -c qual.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o conf.o -c conf.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/<>/init_exp' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./init_exp -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o init_exp.o -c init_exp.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/<>/get_scf_field' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./get_scf_field -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc make[2]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin all make[2]: Entering directory '/<>/spin' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg.o -c seq_reg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg_cmds.o -c seq_reg_cmds.c seq_reg_cmds.c: In function ‘GetActiveSeqName’: seq_reg_cmds.c:919:32: warning: zero-length gnu_printf format string [-Wformat-zero-length] 919 | vTcl_SetResult(interp, ""); | ^~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o raster_cmds.o -c raster_cmds.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_raster.o -c seq_raster.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequtils.o -c sequtils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_results.o -c seq_results.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_sendto.o -c seq_sendto.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o spin_globals.o -c spin_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_plot_funcs.o -c seq_plot_funcs.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed.o -c seqed.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqed.o -c tkSeqed.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedUtils.o -c tkSeqedUtils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedNames.o -c tkSeqedNames.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_write.o -c seqed_write.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqedInterface.o -c seqedInterface.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_translate.o -c seqed_translate.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_restriction_enzymes.o -c seqed_restriction_enzymes.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_search.o -c seqed_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequence_pair_display.o -c sequence_pair_display.c sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:316:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 316 | sprintf(tmp, "%10d", i*10); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from /<>/./tk_utils/tkRaster.h:9, from seq_reg.h:6, from sequence_pair_display.c:4: In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:316:2: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:344:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 344 | sprintf(tmp, "%10d", i*10); | ^ In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:344:2: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o emboss_input_funcs.o -c emboss_input_funcs.c emboss_input_funcs.c: In function ‘read_emboss_data_file’: emboss_input_funcs.c:402:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:437:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fscanf(fp, "##Number %d\n", &data->n_data_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:444:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:470:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 470 | fscanf(fp, "##Number %d\n", &data->n_graph_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:477:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 477 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:518:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fscanf(fp, "%lf %lf\n", &pos, &p_array[i].score); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c: In function ‘init_emboss_stick_create’: emboss_input_funcs.c:658:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 658 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:659:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 659 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:660:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 660 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o readpam.o -c readpam.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o compare_spans.o -c compare_spans.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_hash.o -c sip_hash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_similar_spans.o -c sip_similar_spans.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_find_identity.o -c sip_find_identity.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_quick_scan.o -c sip_quick_scan.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_align.o -c sip_align.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_globals.o -c sip_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_cmds.o -c sip_cmds.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_results.o -c sip_results.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o rescan_matches.o -c rescan_matches.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o probs.o -c probs.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sim.o -c sim.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_sim.o -c sip_sim.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_globals.o -c nip_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_cmds.o -c nip_cmds.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_base_comp.o -c nip_base_comp.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_gene_search.o -c nip_gene_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_trna_search.o -c nip_trna_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o codon_content.o -c codon_content.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_stop_codon.o -c nip_stop_codon.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trna_search.o -c trna_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o splice_search.o -c splice_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_splice_search.o -c nip_splice_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_string_search.o -c nip_string_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_wtmatrix_search.o -c nip_wtmatrix_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_restriction_enzymes.o -c nip_restriction_enzymes.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_canvas_box.o -c nip_canvas_box.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dinuc_freqs.o -c dinuc_freqs.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libspin.so seq_reg.o seq_reg_cmds.o raster_cmds.o seq_raster.o sequtils.o seq_results.o seq_sendto.o spin_globals.o seq_plot_funcs.o seqed.o tkSeqed.o tkSeqedUtils.o tkSeqedNames.o seqed_write.o seqedInterface.o seqed_translate.o seqed_restriction_enzymes.o seqed_search.o sequence_pair_display.o emboss_input_funcs.o readpam.o compare_spans.o sip_hash.o sip_similar_spans.o sip_find_identity.o sip_quick_scan.o sip_align.o sip_globals.o sip_cmds.o sip_results.o rescan_matches.o probs.o sim.o sip_sim.o init.o nip_globals.o nip_cmds.o nip_base_comp.o nip_gene_search.o nip_trna_search.o codon_content.o nip_stop_codon.o trna_search.o splice_search.o nip_splice_search.o nip_string_search.o nip_wtmatrix_search.o nip_restriction_enzymes.o nip_canvas_box.o dinuc_freqs.o -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lseq_utils -lmisc make[2]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip all make[2]: Entering directory '/<>/vector_clip' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./vector_clip -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o vector_clip.o -c vector_clip.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o vector_clip vector_clip.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff all make[2]: Entering directory '/<>/tracediff' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./tracediff -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp arm-linux-gnueabihf-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tracediff main.o -lmutlib -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq all make[2]: Entering directory '/<>/screen_seq' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./screen_seq -I/<>/./text_utils -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o screen_seq.o -c screen_seq.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o screen_seq screen_seq.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip all make[2]: Entering directory '/<>/qclip' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o qclip.o -c qclip.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o consen.o -c consen.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o qclip qclip.o consen.o seqInfo.o -ltext_utils -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip all make[2]: Entering directory '/<>/polyA_clip' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o polyA_clip.o -c polyA_clip.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o polyA_clip polyA_clip.o seqInfo.o -lseq_utils -ltext_utils -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops all make[2]: Entering directory '/<>/stops' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./stops -I/<>/./Misc -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -o stops.o -c stops.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o stops stops.o -ltext_utils -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for Pregap4. make[2]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights all make[2]: Entering directory '/<>/make_weights' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./make_weights -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o make_weights.o -c make_weights.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o make_weights make_weights.o -lseq_utils -ltext_utils -lmisc -lm -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz all make[2]: Entering directory '/<>/find_renz' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./find_renz -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o find_renz.o -c find_renz.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o find_renz find_renz.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for spin_emboss. make[2]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads all make[2]: Entering directory '/<>/copy_reads' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads_globals.o -c copy_reads_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads.o -c copy_reads.c copy_reads.c: In function ‘create_si_struct’: copy_reads.c:125:26: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 125 | sprintf(comment, "%s %s", tag_text, io_name(io)); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from copy_reads.c:4: In function ‘sprintf’, inlined from ‘create_si_struct’ at copy_reads.c:125:5: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ copy_reads.c: In function ‘copy_reads’: copy_reads.c:409:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 409 | sprintf(comment, "%s %s", tag_text, io_name(io_to)); | ^~ In function ‘sprintf’, inlined from ‘copy_reads’ at copy_reads.c:409:6: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libcopy_reads.so copy_reads_globals.o copy_reads.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins all make[2]: Entering directory '/<>/hetins' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./hetins -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o hetins.o -c hetins.c arm-linux-gnueabihf-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan all make[2]: Entering directory '/<>/mutscan' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o pathutil.o -c pathutil.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o stringlist.o -c stringlist.cpp arm-linux-gnueabihf-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o mutscan main.o pathutil.o stringlist.o -lmutlib -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert all make[2]: Entering directory '/<>/convert' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o list.o -c list.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o main.o -c main.c main.c: In function ‘get_db’: main.c:87:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(name, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:92:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(version, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapIO.o -c dapIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapDB.o -c dapDB.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapIO.o -c bapIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapDB.o -c bapDB.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o gapDB.o -c gapDB.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o process.o -c process.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o flat_sd.o -c flat_sd.c arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o staden_convert list.o main.o dapIO.o dapDB.o bapIO.o bapDB.o gapDB.o process.o flat_sd.o -lm -lgap -lg -lprimer3 -lmutlib -ltk_utils -lseq_utils -lmisc -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 all make[2]: Entering directory '/<>/gap5' arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_iface_g.o -c tg_iface_g.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o b+tree2.o -c b+tree2.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hache_table.o -c hache_table.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_gio.o -c tg_gio.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_cache.o -c tg_cache.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_contig.o -c tg_contig.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_sequence.o -c tg_sequence.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_track.o -c tg_track.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_bin.o -c tg_bin.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_utils.o -c tg_utils.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_register.o -c tg_register.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tracks.o -c tg_tracks.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_anno.o -c tg_anno.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_library.o -c tg_library.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_scaffold.o -c tg_scaffold.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_check.o -c tg_check.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tcl.o -c tg_tcl.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index.o -c tg_index.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap5_cmds.o -c newgap5_cmds.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap4_compat.o -c gap4_compat.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkAppInit.o -c tkAppInit.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consensus.o -c consensus.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_depth.o -c read_depth.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_range.o -c gap_range.c gap_range.c: In function ‘gap_range_x’: gap_range.c:310:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 310 | if (!HashTableSearch(lib_recs, (char *)r->library_rec, | ^ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘configure_template’: template_display.c:374:41: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 374 | HashTableAdd(tdi->lib_recs, (char *)r, sizeof(r), hd, NULL); | ^ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depth_track.o -c depth_track.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_draw.o -c template_draw.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tag_plot.o -c tag_plot.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_contigs.o -c export_contigs.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_snps.o -c export_snps.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%lld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /<>/./gap5/hache_table.h:5, from /<>/./gap5/g-struct.h:24, from /<>/./gap5/g.h:1, from tg_struct.h:4, from tg_gio.h:4, from io_utils.h:6, from find_oligo.c:4: In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%lld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o import_gff.o -c import_gff.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o str_finder.o -c str_finder.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_extend.o -c contig_extend.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_haplotypes.o -c find_haplotypes.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o interval_tree.o -c interval_tree.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-alloc.o -c g-alloc.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_view.o -c editor_view.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_join.o -c editor_join.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_search.o -c editor_search.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:279:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:279:18: note: assuming directive output of 12 bytes 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:279:5: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_oligo.o -c editor_oligo.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index_common.o -c tg_index_common.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o baf.o -c baf.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maq.o -c maq.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maqmap.o -c maqmap.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_index.o -c sam_index.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_pileup.o -c sam_pileup.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ace.o -c ace.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o caf.o -c caf.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fasta.o -c fasta.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o afg.o -c afg.c arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depad_seq_tree.o -c depad_seq_tree.c arm-linux-gnueabihf-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap5.so -L/<>/lib newgap5_cmds.o gap4_compat.o gap_hash.o hash_lib.o qual.o qualIO.o gap_globals.o tagdb.o init.o notedb.o active_tags.o list_proc.o gap-error.o stack_dump.o tk-io-reg.o tkAppInit.o consen.o contig_selector.o cs-object.o find_repeats.o readpair.o check_assembly.o consensus.o read_depth.o gap_range.o template_display.o depth_track.o template_draw.o quality_plot.o tag_plot.o fij.o do_fij.o break_contig.o dis_readings.o export_contigs.o export_snps.o find_oligo.o import_gff.o shuffle_pads.o str_finder.o restriction_enzymes.o gap_canvas_box.o contig_extend.o auto_break.o find_haplotypes.o interval_tree.o g-files.o g-db.o g-struct.o g-error.o g-alloc.o g-io.o g-connect.o g-request.o tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o editor_view.o editor_join.o editor_search.o tkEdNames.o tkEditor.o tman_interface.o tman_display.o primlib.o editor_oligo.o tg_index_common.o baf.o maq.o maqmap.o sam_index.o sam_pileup.o ace.o caf.o fasta.o afg.o depad_seq_tree.o -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: tg_index_common.o: in function `bttmp_file_open': ./gap5/tg_index_common.c:105:(.text+0x4a4): warning: the use of `tmpnam' is dangerous, better use `mkstemp' arm-linux-gnueabihf-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tg_index.bin tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o tg_index.o -lgap5 -L/usr/lib/arm-linux-gnueabihf -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts all make[2]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for scripts. make[2]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data all make[2]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for data. make[2]: Leaving directory '/<>/data' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/staden-2.0.0\+b11/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/share/staden/etc mkdir -p /<>/debian/tmp/usr/share/staden mkdir -p /<>/debian/tmp/usr/share/staden/scripts mkdir -p /<>/debian/tmp/usr/share/staden/tcl mkdir -p /<>/debian/tmp/usr/share/doc mkdir -p /<>/debian/tmp/usr/share/man cp shlib.conf /<>/debian/tmp/usr/share/staden/etc cp ./staden.profile /<>/debian/tmp/usr/share/staden make JOB=install make[3]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc install make[4]: Entering directory '/<>/Misc' cp /<>/lib/libmisc.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden make[4]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils install make[4]: Entering directory '/<>/tk_utils' cp /<>/lib/libtk_utils.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden mkdir /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/*.tcl /<>/./tk_utils/tclIndex /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/stash /<>/debian/tmp/usr/bin cp /<>/./tk_utils/2bars_*.bmp /<>/./tk_utils/help_config /<>/./tk_utils/tk_utilsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils install make[4]: Entering directory '/<>/text_utils' cp /<>/lib/libtext_utils.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden make[4]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils install make[4]: Entering directory '/<>/seq_utils' cp /<>/lib/libseq_utils.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp /<>/./seq_utils/align_lib_nuc_matrix /<>/./seq_utils/nuc_matrix /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib install make[4]: Entering directory '/<>/mutlib' cp /<>/lib/libmutlib.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden make[4]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi install make[4]: Entering directory '/<>/abi' cp getABISampleName getABIcomment getABIdate getABIfield /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf install make[4]: Entering directory '/<>/alf' cp alfsplit /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g install make[4]: Entering directory '/<>/g' cp /<>/lib/libg.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden make[4]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev install make[4]: Entering directory '/<>/trev' install trev /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trev.tcl /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trevrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 install make[4]: Entering directory '/<>/primer3' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src install make[4]: Entering directory '/<>/primer3/src' cp /<>/lib/libprimer3.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden make[4]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 install make[4]: Entering directory '/<>/gap4' cp copy_db /<>/debian/tmp/usr/bin install gap4 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/./gap4/*.tcl /<>/./gap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/lib/libgap.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp /<>/./gap4/gaprc /<>/./gap4/gaprc_menu_full /<>/./gap4/gaprc_menu_mito /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/GTAGDB /<>/./gap4/NOTEDB /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/cap2rc /<>/./gap4/cap3rc /<>/./gap4/fak2rc /<>/./gap4/phraprc /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/*.bitmap /<>/./gap4/*.gif /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish install make[4]: Entering directory '/<>/prefinish' mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/*.tcl /<>/./prefinish/*.itcl /<>/./prefinish/*.itk /<>/./prefinish/help /<>/./prefinish/args.template /<>/./prefinish/tclIndex /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/config.prefinish /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/lib/libprefinish.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden install prefinish /<>/debian/tmp/usr/bin cp /<>/./prefinish/finish_sanger /<>/./prefinish/finish_cDNA /<>/./prefinish/finish_cDNA_ends_only \ /<>/debian/tmp/usr/share/staden/scripts mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/rules/*.rule /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/config.prefinish /<>/./prefinish/prefinishrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo install make[4]: Entering directory '/<>/haplo' mkdir /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/./haplo/*.tcl /<>/./haplo/tclIndex /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/lib/libhaplo.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp /<>/./haplo/haplorc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba install make[4]: Entering directory '/<>/eba' cp eba /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp install make[4]: Entering directory '/<>/init_exp' cp init_exp /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field install make[4]: Entering directory '/<>/get_scf_field' cp get_scf_field /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin install make[4]: Entering directory '/<>/spin' install spin /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/./spin/*.tcl /<>/./spin/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/lib/libspin.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp /<>/./spin/*.wts /<>/./spin/niprc /<>/./spin/siprc /<>/./spin/spinrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip install make[4]: Entering directory '/<>/vector_clip' cp vector_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff install make[4]: Entering directory '/<>/tracediff' cp tracediff /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq install make[4]: Entering directory '/<>/screen_seq' cp screen_seq /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip install make[4]: Entering directory '/<>/qclip' cp qclip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip install make[4]: Entering directory '/<>/polyA_clip' cp polyA_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops install make[4]: Entering directory '/<>/stops' cp stops /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 install make[4]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' install pregap4 /<>/debian/tmp/usr/bin/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4 cp /<>/./pregap4/*.tcl /<>/./pregap4/widget_licence /<>/./pregap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/modules/*.p4m /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules cp /<>/./pregap4/templates/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates cp: cannot stat '/<>/./pregap4/templates/*.p4t': No such file or directory make[4]: [/<>/./pregap4/Makefile:42: install] Error 1 (ignored) cp /<>/./pregap4/naming_schemes/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/pregap4rc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights install make[4]: Entering directory '/<>/make_weights' cp make_weights /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz install make[4]: Entering directory '/<>/find_renz' cp find_renz /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss install make[4]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/*.tcl /<>/./spin_emboss/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/create_emboss_files /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp /<>/./spin_emboss/acdtcl/* /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp: cannot stat '/<>/./spin_emboss/acdtcl/*': No such file or directory make[4]: [/<>/./spin_emboss/Makefile:30: install] Error 1 (ignored) cp /<>/./spin_emboss/emboss_menu /<>/./spin_emboss/spin_embossrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads install make[4]: Entering directory '/<>/copy_reads' mkdir /<>/debian/tmp/usr/share/staden/tcl/copy_reads install copy_reads /<>/debian/tmp/usr/bin cp /<>/./copy_reads/copy_reads.tcl /<>/./copy_reads/copy_reads_main.tcl /<>/./copy_reads/tclIndex /<>/debian/tmp/usr/share/staden/tcl/copy_reads cp /<>/lib/libcopy_reads.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp /<>/./copy_reads/copy_readsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins install make[4]: Entering directory '/<>/hetins' cp hetins /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan install make[4]: Entering directory '/<>/mutscan' cp mutscan /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert install make[4]: Entering directory '/<>/convert' cp staden_convert /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 install make[4]: Entering directory '/<>/gap5' install gap5 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/*.tcl /<>/./gap5/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/../gap4/acd2tag.tcl /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/gap5rc /<>/./gap5/gap5rc_menu_full /<>/debian/tmp/usr/share/staden/etc cp /<>/lib/libgap5.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/staden cp tg_index.bin /<>/debian/tmp/usr/bin install tg_index /<>/debian/tmp/usr/bin install gap5_cmd /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts install make[4]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' cp /<>/./scripts/assemble4 /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta-split /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta2exp /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/splitseq_da /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/staden_help /<>/debian/tmp/usr/share/staden/scripts make[4]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data install make[4]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/etc/alus cp /<>/./data/alus/* /<>/debian/tmp/usr/share/staden/etc/alus mkdir /<>/debian/tmp/usr/share/staden/etc/blast_data cp /<>/./data/blast_data/* /<>/debian/tmp/usr/share/staden/etc/blast_data mkdir /<>/debian/tmp/usr/share/staden/etc/gcodes cp /<>/./data/gcodes/* /<>/debian/tmp/usr/share/staden/etc/gcodes mkdir /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/vectors/* /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/RENZYM.* /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/renzyme_bairoch /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/m13mp18_primers /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/vector_primer /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/pam250 /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/data' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # Remove file causing lintian errors that is targeting at windows find debian -name help_windows.tcl -delete # Remove some empty directories find debian -type d -empty -name acdtcl -delete find debian -type d -empty -name templates -delete # Build system is not prepared for multi-arch mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/* /<>/debian/tmp/usr/lib rmdir /<>/debian/tmp/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installdocs: warning: Could not parse doc-base for doc-base Document id; skipping dh_installchangelogs -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' dh_installman # due to a file name conflict spin.1 is moved out of the way #826684 mkdir -p debian/staden/usr/lib/debian-med/share/man/man1/ mv debian/staden/usr/share/man/man1/spin.1 debian/staden/usr/lib/debian-med/share/man/man1/ gzip -9 debian/staden/usr/lib/debian-med/share/man/man1/spin.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms # scripts should be executable chmod a+x debian/*/usr/share/staden/tcl/gap5/contig_graph.tcl chmod a+x debian/*/usr/share/staden/tcl/gap5/gap5_cmd.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/add_stops.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/finish_sanger.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_ext.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_galeon.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_int.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_netscape.tcl make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'staden' in '../staden_2.0.0+b11-5_armhf.deb'. dpkg-deb: building package 'staden-dbgsym' in '../staden-dbgsym_2.0.0+b11-5_armhf.deb'. dpkg-genbuildinfo --build=any -O../staden_2.0.0+b11-5_armhf.buildinfo dpkg-genchanges --build=any -O../staden_2.0.0+b11-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-03-16T10:31:47Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden_2.0.0+b11-5_armhf.changes: --------------------------------- Format: 1.8 Date: Wed, 13 Mar 2024 15:32:32 +0100 Source: staden Binary: staden staden-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.0.0+b11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools Closes: 1066508 Changes: staden (2.0.0+b11-5) unstable; urgency=medium . * Team upload. * Mark staden-commen as Multi-Arch: foreign * Standards-Version: 4.5.0 * Correctly detect 64bit host architectures * d/patches/use_mkstemp_instead_of_tmpnam.patch: add missing stdlib include. Closes: #1066508 * d/control: libncurses-dev replaced libncurses5-dev. * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Update lintian override info format in d/staden-common.lintian-overrides on line 2. * watch file standard 4 (routine-update) * d/upstream/metadata: add links to Sourceforge issue tracker, VCS Checksums-Sha1: 9d116fe540e726e91a94ee50d71667dc3469852a 4269556 staden-dbgsym_2.0.0+b11-5_armhf.deb 5a03a35266f4209fe579f0bd082d87fec4674139 8375 staden_2.0.0+b11-5_armhf.buildinfo 18c31dd85adc2f9e14d11de2f2f6ff0461bf97d5 1429248 staden_2.0.0+b11-5_armhf.deb Checksums-Sha256: 811f52163e2305338426d74d09b67d2037e172d64fb4e6fd049b86553efaf395 4269556 staden-dbgsym_2.0.0+b11-5_armhf.deb b4a2e8f62141e17dc323d7a6f80cfdfdf8506379cbb295a27afa34b1b2c5b215 8375 staden_2.0.0+b11-5_armhf.buildinfo cdcbb8234acf11fcea8d0c43403a7e8ae65d660399cca532604b4eb259297143 1429248 staden_2.0.0+b11-5_armhf.deb Files: 90b0998ad0302e6136383dfa4843fbf6 4269556 debug optional staden-dbgsym_2.0.0+b11-5_armhf.deb f1d43fb37365e39f7a1ce5765f90ad71 8375 science optional staden_2.0.0+b11-5_armhf.buildinfo 8c2f9b165dffa4115e4901d26b1f7eb8 1429248 science optional staden_2.0.0+b11-5_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: staden Binary: staden staden-dbgsym Architecture: armhf Version: 2.0.0+b11-5 Checksums-Md5: 90b0998ad0302e6136383dfa4843fbf6 4269556 staden-dbgsym_2.0.0+b11-5_armhf.deb 8c2f9b165dffa4115e4901d26b1f7eb8 1429248 staden_2.0.0+b11-5_armhf.deb Checksums-Sha1: 9d116fe540e726e91a94ee50d71667dc3469852a 4269556 staden-dbgsym_2.0.0+b11-5_armhf.deb 18c31dd85adc2f9e14d11de2f2f6ff0461bf97d5 1429248 staden_2.0.0+b11-5_armhf.deb Checksums-Sha256: 811f52163e2305338426d74d09b67d2037e172d64fb4e6fd049b86553efaf395 4269556 staden-dbgsym_2.0.0+b11-5_armhf.deb cdcbb8234acf11fcea8d0c43403a7e8ae65d660399cca532604b4eb259297143 1429248 staden_2.0.0+b11-5_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 16 Mar 2025 10:31:46 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.7), base-passwd (= 3.6.6), bash (= 5.2.37-1.1+b1), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1+b1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-2), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), itcl3 (= 3.4.4-3), itcl3-dev (= 3.4.4-3), itk3 (= 3.4.2-5), itk3-dev (= 3.4.2-5), iwidgets4 (= 4.1.1-3), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-6), libc-dev-bin (= 2.41-6), libc6 (= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-2), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.12.1-3), libcurl4-gnutls-dev (= 8.12.1-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.0-1), libexpat1-dev (= 2.7.0-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig-dev (= 2.15.0-2.1), libfontconfig1 (= 2.15.0-2.1), libfontconfig1-dev (= 2.15.0-2.1), libfreetype-dev (= 2.13.3+dfsg-1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.1-1), libhtscodecs-dev (= 1.6.1-2), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 14.2.0-19), libicu76 (= 76.1-3), libidn2-0 (= 2.3.8-2), libidn2-dev (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.9+dfsg-2), libldap2 (= 2.6.9+dfsg-2), liblsan0 (= 14.2.0-19), liblzma-dev (= 5.6.4-1), liblzma5 (= 5.6.4-1), libmagic-mgc (= 1:5.46-2), libmagic1t64 (= 1:5.46-2), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncurses-dev (= 6.5+20250216-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.47-1.1), libpng16-16t64 (= 1.6.47-1.1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 14.2.0-19), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.5.5-2+b1), libselinux1 (= 3.8-4), libsframe1 (= 2.44-3), libsmartcols1 (= 2.40.4-5), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstaden-read-dev (= 1.15.0-1.1+b2), libstaden-read14t64 (= 1.15.0-1.1+b2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.4-3), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtcl8.6 (= 8.6.16+dfsg-1), libtinfo6 (= 6.5+20250216-2), libtk8.6 (= 8.6.16-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.4-3), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-5), libx11-6 (= 2:1.8.10-2), libx11-data (= 2:1.8.10-2), libx11-dev (= 2:1.8.10-2), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxft-dev (= 2.3.6-1+b4), libxft2 (= 2.3.6-1+b4), libxml2 (= 2.12.7+dfsg+really2.9.14-0.3+b1), libxrender-dev (= 1:0.9.10-1.1+b4), libxrender1 (= 1:0.9.10-1.1+b4), libxss-dev (= 1:1.2.3-1+b3), libxss1 (= 1:1.2.3-1+b3), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.17-1), m4 (= 1.4.19-7), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.4.1-1), patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tcl (= 8.6.16), tcl-dev (= 8.6.16), tcl8.6 (= 8.6.16+dfsg-1), tcl8.6-dev (= 8.6.16+dfsg-1), tk (= 8.6.16), tk-dev (= 8.6.16), tk8.6 (= 8.6.16-1), tk8.6-dev (= 8.6.16-1), tklib (= 0.9-1), tzdata (= 2025a-2), util-linux (= 2.40.4-5), uuid-dev (= 2.40.4-5), x11-common (= 1:7.7+24), x11proto-core-dev (= 2024.1-1), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.4-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1710340352" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ staden-dbgsym_2.0.0+b11-5_armhf.deb ----------------------------------- new Debian package, version 2.0. size 4269556 bytes: control archive=2124 bytes. 1728 bytes, 12 lines control 3690 bytes, 35 lines md5sums Package: staden-dbgsym Source: staden Version: 2.0.0+b11-5 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 5186 Depends: staden (= 2.0.0+b11-5) Section: debug Priority: optional Description: debug symbols for staden Build-Ids: 125be35f65eb7926272b92ea5927064a792d108f 1507c7d763fdaa3be46581b625bf3d4b3bef7c4c 20ef5e85a0ab2bd22d794853ed71f46cde959976 312ade2665615af62d59150db6d59b98b591a0c8 3b5e07aff5d85e7caa6069acb8f677f26144df5a 45eed66b0b240ab1f1b0685876237aca0499dacd 465ef03db2fef34391a31c0cdb300c27a8c383e5 51bd222461daa7a8a2b623066aac2e8c10cede7f 5d133d47cf8fa5ffadb084ad28ce27654ef70b1b 60a94e79d7cb7bb7734c47c40c548e7509ff4f64 674011318796a3ed479aef64982d4b32bab2395f 6bf1048796655f8ab368e82157ed30245da4293e 705ae7dff87c37e49e5af72ca5e4dbd91cc1a2a1 708bccae382ea997e758115cce8c1116d33da248 8260439188579c3c8f47b7b01fe3e8a6550872a6 840fd2a269227aa0e54e24ed0dc1b09aeb38e617 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1114460 2024-03-13 14:32 ./usr/lib/debug/.build-id/67/4011318796a3ed479aef64982d4b32bab2395f.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/6b/ -rw-r--r-- root/root 287396 2024-03-13 14:32 ./usr/lib/debug/.build-id/6b/f1048796655f8ab368e82157ed30245da4293e.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 28164 2024-03-13 14:32 ./usr/lib/debug/.build-id/70/5ae7dff87c37e49e5af72ca5e4dbd91cc1a2a1.debug -rw-r--r-- root/root 43180 2024-03-13 14:32 ./usr/lib/debug/.build-id/70/8bccae382ea997e758115cce8c1116d33da248.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/82/ -rw-r--r-- root/root 13900 2024-03-13 14:32 ./usr/lib/debug/.build-id/82/60439188579c3c8f47b7b01fe3e8a6550872a6.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/84/ -rw-r--r-- root/root 98396 2024-03-13 14:32 ./usr/lib/debug/.build-id/84/0fd2a269227aa0e54e24ed0dc1b09aeb38e617.debug drwxr-xr-x root/root 0 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2024-03-13 14:32 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 24680 2024-03-13 14:32 ./usr/lib/debug/.build-id/fb/8f467d30ce1af7d3e79531086883e59321a1c4.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 67532 2024-03-13 14:32 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/staden.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/share/doc/staden-dbgsym -> staden staden_2.0.0+b11-5_armhf.deb ---------------------------- new Debian package, version 2.0. size 1429248 bytes: control archive=3136 bytes. 2510 bytes, 47 lines control 3948 bytes, 62 lines md5sums Package: staden Version: 2.0.0+b11-5 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 4616 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), liblzma5 (>= 5.1.1alpha+20120614), libpng16-16t64 (>= 1.6.46), libstaden-read14t64 (>= 1.14.12), libstdc++6 (>= 5), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, zlib1g (>= 1:1.2.3.4), staden-common (= 2.0.0+b11-5), staden-io-lib-utils, tklib Recommends: med-config Section: science Priority: optional Homepage: https://sourceforge.net/projects/staden/ Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. drwxr-xr-x root/root 0 2024-03-13 14:32 ./ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/bin/ -rwxr-xr-x root/root 321 2020-02-19 15:32 ./usr/bin/gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/gap5 -> gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/pregap4 -> gap4 -rwxr-xr-x root/root 642 2020-02-19 15:32 ./usr/bin/staden lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/trev -> gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/spin -> ../../../bin/gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 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./usr/lib/staden/bin/getABISampleName -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/getABIcomment -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/getABIdate -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/getABIfield -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/get_scf_field -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/hetins -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/init_exp -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/make_weights -rwxr-xr-x root/root 67216 2024-03-13 14:32 ./usr/lib/staden/bin/mutscan -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/polyA_clip -rwxr-xr-x root/root 1879 2024-03-13 14:32 ./usr/lib/staden/bin/prefinish -rwxr-xr-x root/root 1861 2024-03-13 14:32 ./usr/lib/staden/bin/pregap4 -rwxr-xr-x root/root 67176 2024-03-13 14:32 ./usr/lib/staden/bin/qclip -rwxr-xr-x root/root 67188 2024-03-13 14:32 ./usr/lib/staden/bin/screen_seq -rwxr-xr-x root/root 1855 2024-03-13 14:32 ./usr/lib/staden/bin/spin -rwxr-xr-x root/root 67272 2024-03-13 14:32 ./usr/lib/staden/bin/staden_convert -rwxr-xr-x root/root 394 2024-03-13 14:32 ./usr/lib/staden/bin/stash -rwxr-xr-x root/root 67164 2024-03-13 14:32 ./usr/lib/staden/bin/stops -rwxr-xr-x root/root 1815 2024-03-13 14:32 ./usr/lib/staden/bin/tg_index -rwxr-xr-x root/root 265284 2024-03-13 14:32 ./usr/lib/staden/bin/tg_index.bin -rwxr-xr-x root/root 67216 2024-03-13 14:32 ./usr/lib/staden/bin/tracediff -rwxr-xr-x root/root 1869 2024-03-13 14:32 ./usr/lib/staden/bin/trev -rwxr-xr-x root/root 67232 2024-03-13 14:32 ./usr/lib/staden/bin/vector_clip -rw-r--r-- root/root 67292 2024-03-13 14:32 ./usr/lib/staden/libcopy_reads.so -rw-r--r-- root/root 67116 2024-03-13 14:32 ./usr/lib/staden/libg.so -rw-r--r-- root/root 736720 2024-03-13 14:32 ./usr/lib/staden/libgap.so -rw-r--r-- root/root 739860 2024-03-13 14:32 ./usr/lib/staden/libgap5.so -rw-r--r-- 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./usr/share/applications/pregap4.desktop -rw-r--r-- root/root 241 2020-02-19 15:32 ./usr/share/applications/trev.desktop drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 833 2020-02-19 15:32 ./usr/share/bash-completion/completions/staden drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/staden/ -rw-r--r-- root/root 2159 2020-02-19 15:32 ./usr/share/doc/staden/README.Debian -rw-r--r-- root/root 900 2024-03-13 14:32 ./usr/share/doc/staden/changelog.Debian.gz -rw-r--r-- root/root 197205 2016-04-25 10:40 ./usr/share/doc/staden/changelog.gz -rw-r--r-- root/root 9591 2024-03-13 14:32 ./usr/share/doc/staden/copyright drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/man1/ -rw-r--r-- root/root 1007 2024-03-13 14:32 ./usr/share/man/man1/gap4.1.gz -rw-r--r-- root/root 961 2024-03-13 14:32 ./usr/share/man/man1/gap5.1.gz -rw-r--r-- root/root 682 2024-03-13 14:32 ./usr/share/man/man1/pregap4.1.gz -rw-r--r-- root/root 826 2024-03-13 14:32 ./usr/share/man/man1/trev.1.gz drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/staden/ -rw-r--r-- root/root 4107 2020-02-19 15:32 ./usr/share/staden/icon4bl.svg lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1458 B] Get:5 copy:/<>/apt_archive ./ Packages [1537 B] Fetched 3610 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:armhf shared-mime-info t1utils ucf unzip 0 upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After this operation, 86.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0050 [42.7 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:23 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-3 [365 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.21-1 [63.0 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.4-1 [225 kB] Get:40 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.4-1 [523 kB] Get:41 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:46 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.2.46-5 [122 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:48 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.2.46-5 [533 kB] Get:49 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.17.0-1 [3055 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.41 [68.3 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:60 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:65 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.67-1 [217 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:69 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:79 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b4 [32.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:99 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:108 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:115 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:116 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:119 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.026-1 [11.7 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:127 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:128 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:129 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:130 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-2 [38.9 kB] Get:131 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:134 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:139 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:152 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:156 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b3 [20.4 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB] Get:167 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-2 [65.0 kB] Get:168 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:169 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:170 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:171 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:172 http://localhost:3142/debian unstable/main amd64 lintian all 2.121.1+nmu1 [1059 kB] Preconfiguring packages ... Fetched 22.8 MB in 0s (130 MB/s) Selecting previously unselected package netbase. (Reading database ... 23133 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.4.1-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package gpgconf. Preparing to unpack .../044-gpgconf_2.2.46-5_amd64.deb ... Unpacking gpgconf (2.2.46-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../045-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package gpg. 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Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.41) ... Setting up liblz1:amd64 (1.15-2) ... Setting up libberkeleydb-perl:amd64 (0.66-1) ... Setting up plzip (1.12-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libgpg-error0:amd64 (1.51-3) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.026-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... 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Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up procps (2:4.0.4-7) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libstemmer0d:amd64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.4.1-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-6) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.0-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0050) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-5) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-5) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.21-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.67-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.016-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-3) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.0.4-1) ... Setting up appstream (1.0.4-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.121.1+nmu1) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 146 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 15 Job: staden_2.0.0+b11-5 Lintian: pass Machine Architecture: amd64 Package: staden Package-Time: 174 Source-Version: 2.0.0+b11-5 Space: n/a Status: successful Version: 2.0.0+b11-5 -------------------------------------------------------------------------------- Finished at 2025-03-16T10:31:47Z Build needed 00:02:54, no disk space