sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | staden 2.0.0+b11-5 (i386) Sat, 26 Apr 2025 12:24:08 +0000 | +==============================================================================+ Package: staden Version: 2.0.0+b11-5 Source Version: 2.0.0+b11-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.jzrBI_5iiL... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/staden-19ADuu/resolver-i5xJBn' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [205 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.0 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9879 kB] Fetched 31.1 MB in 7s (4350 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils coreutils diffutils libapt-pkg7.0 linux-libc-dev 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8544 kB of archives. After this operation, 41.0 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 coreutils arm64 9.7-2 [2947 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 diffutils arm64 1:3.10-4 [378 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg7.0 arm64 3.0.1 [977 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 apt arm64 3.0.1 [1363 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 apt-utils arm64 3.0.1 [315 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.12.25-1 [2565 kB] Fetched 8544 kB in 0s (82.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12033 files and directories currently installed.) Preparing to unpack .../coreutils_9.7-2_arm64.deb ... Unpacking coreutils (9.7-2) over (9.7-1) ... Setting up coreutils (9.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-4_arm64.deb ... Unpacking diffutils (1:3.10-4) over (1:3.10-3) ... Setting up diffutils (1:3.10-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.0.1_arm64.deb ... Unpacking libapt-pkg7.0:arm64 (3.0.1) over (3.0.0) ... Setting up libapt-pkg7.0:arm64 (3.0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.1_arm64.deb ... Unpacking apt (3.0.1) over (3.0.0) ... Setting up apt (3.0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../apt-utils_3.0.1_arm64.deb ... Unpacking apt-utils (3.0.1) over (3.0.0) ... Preparing to unpack .../linux-libc-dev_6.12.25-1_all.deb ... Unpacking linux-libc-dev (6.12.25-1) over (6.12.22-1) ... Setting up apt-utils (3.0.1) ... Setting up linux-libc-dev (6.12.25-1) ... Processing triggers for libc-bin (2.41-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://mirror.einval.org/debian unstable/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://mirror.einval.org/debian unstable/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 0s (44.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/staden-19ADuu/staden-2.0.0+b11' with '<>' I: NOTICE: Log filtering will replace 'build/staden-19ADuu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [873 B] Get:5 copy:/<>/apt_archive ./ Packages [915 B] Fetched 2397 B in 0s (93.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils comerr-dev:i386 cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:i386 itcl3-dev:i386 itk3 itk3:i386 itk3-dev:i386 iwidgets4 krb5-multidev:i386 libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386 libbrotli1 libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3t64:i386 libdebhelper-perl libelf1t64 libevent-2.1-7t64:i386 libexpat1 libexpat1:i386 libexpat1-dev:i386 libfakeroot libffi8:i386 libfile-stripnondeterminism-perl libfontconfig-dev:i386 libfontconfig1 libfontconfig1:i386 libfontconfig1-dev:i386 libfreetype-dev:i386 libfreetype6 libfreetype6:i386 libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls-dane0t64:i386 libgnutls-openssl27t64:i386 libgnutls28-dev:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libgssrpc4t64:i386 libhogweed6t64:i386 libhtscodecs-dev:i386 libhtscodecs2:i386 libidn2-0:i386 libidn2-dev:i386 libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkadm5clnt-mit12:i386 libkadm5srv-mit12:i386 libkdb5-10t64:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5-dev:i386 libkrb5support0:i386 libldap-dev:i386 libldap2:i386 liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libncurses-dev:i386 libncurses6:i386 libncursesw6:i386 libnettle8t64:i386 libnghttp2-14:i386 libnghttp2-dev:i386 libnghttp3-9:i386 libnghttp3-dev:i386 libngtcp2-16:i386 libngtcp2-crypto-gnutls-dev:i386 libngtcp2-crypto-gnutls8:i386 libngtcp2-dev:i386 libp11-kit-dev:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpng-dev:i386 libpng16-16t64 libpng16-16t64:i386 libpsl-dev:i386 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp-dev:i386 librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1-dev:i386 libssh2-1t64:i386 libssl-dev:i386 libssl3t64:i386 libstaden-read-dev:i386 libstaden-read14t64:i386 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtasn1-6-dev:i386 libtcl8.6 libtcl8.6:i386 libtinfo6:i386 libtk8.6 libtk8.6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunbound8:i386 libunistring5 libunistring5:i386 libuuid1:i386 libx11-6 libx11-6:i386 libx11-data libx11-dev:i386 libxau-dev:i386 libxau6 libxau6:i386 libxcb1 libxcb1:i386 libxcb1-dev:i386 libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386 libxext6 libxext6:i386 libxft-dev:i386 libxft2 libxft2:i386 libxml2 libxrender-dev:i386 libxrender1 libxrender1:i386 libxss-dev:i386 libxss1 libxss1:i386 libzstd-dev:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pkgconf:i386 pkgconf-bin po-debconf sensible-utils tcl tcl-dev:i386 tcl8.6 tcl8.6-dev:i386 tk tk-dev:i386 tk8.6 tk8.6-dev:i386 tklib tzdata uuid-dev:i386 x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:i386 gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff itcl3-doc itcl3-doc:i386 itk3-doc itk3-doc:i386 iwidgets4-doc krb5-doc:i386 glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libcurl4-doc:i386 libidn-dev:i386 freetype2-doc:i386 gmp-doc:i386 libgmp10-doc:i386 libmpfr-dev:i386 dns-root-data:i386 gnutls-bin:i386 gnutls-doc:i386 krb5-user:i386 liblzma-doc:i386 ncurses-doc:i386 libnghttp2-doc:i386 p11-kit-doc:i386 libssl-doc:i386 libstdc++-14-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:i386 libx11-doc:i386 libxcb-doc:i386 libxext-doc:i386 m4-doc apparmor less www-browser libmail-box-perl tcl-doc:i386 tcl-tclreadline tcl8.6-doc:i386 tk-doc:i386 tk8.6-doc:i386 Recommended packages: curl | wget | lynx bzip2-doc:i386 ca-certificates:i386 libarchive-cpio-perl krb5-locales:i386 libldap-common:i386 libgpm2:i386 libpng-tools:i386 publicsuffix:i386 libsasl2-modules:i386 libtasn1-doc:i386 libltdl-dev libmail-sendmail-perl tcllib The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils comerr-dev:i386 cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:i386 itcl3-dev:i386 itk3 itk3:i386 itk3-dev:i386 iwidgets4 krb5-multidev:i386 libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386 libbrotli1 libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3t64:i386 libdebhelper-perl libelf1t64 libevent-2.1-7t64:i386 libexpat1 libexpat1:i386 libexpat1-dev:i386 libfakeroot libffi8:i386 libfile-stripnondeterminism-perl libfontconfig-dev:i386 libfontconfig1 libfontconfig1:i386 libfontconfig1-dev:i386 libfreetype-dev:i386 libfreetype6 libfreetype6:i386 libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls-dane0t64:i386 libgnutls-openssl27t64:i386 libgnutls28-dev:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libgssrpc4t64:i386 libhogweed6t64:i386 libhtscodecs-dev:i386 libhtscodecs2:i386 libidn2-0:i386 libidn2-dev:i386 libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkadm5clnt-mit12:i386 libkadm5srv-mit12:i386 libkdb5-10t64:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5-dev:i386 libkrb5support0:i386 libldap-dev:i386 libldap2:i386 liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libncurses-dev:i386 libncurses6:i386 libncursesw6:i386 libnettle8t64:i386 libnghttp2-14:i386 libnghttp2-dev:i386 libnghttp3-9:i386 libnghttp3-dev:i386 libngtcp2-16:i386 libngtcp2-crypto-gnutls-dev:i386 libngtcp2-crypto-gnutls8:i386 libngtcp2-dev:i386 libp11-kit-dev:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpng-dev:i386 libpng16-16t64 libpng16-16t64:i386 libpsl-dev:i386 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp-dev:i386 librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1-dev:i386 libssh2-1t64:i386 libssl-dev:i386 libssl3t64:i386 libstaden-read-dev:i386 libstaden-read14t64:i386 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtasn1-6-dev:i386 libtcl8.6 libtcl8.6:i386 libtinfo6:i386 libtk8.6 libtk8.6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunbound8:i386 libunistring5 libunistring5:i386 libuuid1:i386 libx11-6 libx11-6:i386 libx11-data libx11-dev:i386 libxau-dev:i386 libxau6 libxau6:i386 libxcb1 libxcb1:i386 libxcb1-dev:i386 libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386 libxext6 libxext6:i386 libxft-dev:i386 libxft2 libxft2:i386 libxml2 libxrender-dev:i386 libxrender1 libxrender1:i386 libxss-dev:i386 libxss1 libxss1:i386 libzstd-dev:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pkgconf:i386 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils tcl tcl-dev:i386 tcl8.6 tcl8.6-dev:i386 tk tk-dev:i386 tk8.6 tk8.6-dev:i386 tklib tzdata uuid-dev:i386 x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 0 upgraded, 217 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After this operation, 487 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get:18 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.2.0-19 [49.4 kB] Get:19 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.2.0-19 [88.2 kB] Get:20 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.41-7 [2721 kB] Get:21 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Get:22 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Get:23 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.41-7 [1808 kB] Get:24 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1+b1 [24.6 kB] Get:25 http://mirror.einval.org/debian unstable/main i386 comerr-dev i386 2.1-1.47.2-1+b1 [56.4 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu-base arm64 14.2.0-19cross1 [49.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 cpp-14-i686-linux-gnu arm64 14.2.0-19cross1 [10.4 MB] Get:28 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:14.2.0-1 [4840 B] Get:29 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.44-3 [1479 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.41-6cross2 [1423 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14.2.0-19cross1 [88.2 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14.2.0-19cross1 [136 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14.2.0-19cross1 [26.9 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14.2.0-19cross1 [7384 B] Get:36 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14.2.0-19cross1 [2597 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14.2.0-19cross1 [719 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14.2.0-19cross1 [1052 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14.2.0-19cross1 [231 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-i386-cross all 14.2.0-19cross1 [2583 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu arm64 14.2.0-19cross1 [20.0 MB] Get:42 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:14.2.0-1 [1444 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.12.17-1cross2 [2369 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.41-6cross2 [1804 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-i386-cross all 14.2.0-19cross1 [2426 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 g++-14-i686-linux-gnu arm64 14.2.0-19cross1 [11.2 MB] Get:47 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:14.2.0-1 [1200 B] Get:48 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:55 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.37.1.1-1 [29.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.37.1.1-1 [75.4 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 itcl3 arm64 3.4.4-3 [46.3 kB] Get:70 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1+b1 [84.7 kB] Get:71 http://mirror.einval.org/debian unstable/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB] Get:72 http://mirror.einval.org/debian unstable/main i386 itcl3 i386 3.4.4-3 [54.6 kB] Get:73 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 tcl8.6 arm64 8.6.16+dfsg-1 [121 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 tcl8.6-dev i386 8.6.16+dfsg-1 [1120 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 tcl arm64 8.6.16 [4096 B] Get:77 http://mirror.einval.org/debian unstable/main i386 tcl-dev i386 8.6.16 [6624 B] Get:78 http://mirror.einval.org/debian unstable/main i386 itcl3-dev i386 3.4.4-3 [15.6 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libexpat1 i386 2.7.1-1 [110 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libbz2-1.0 i386 1.0.8-6 [38.1 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libpng16-16t64 i386 1.6.47-1.1 [289 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2.3 [403 kB] Get:85 http://mirror.einval.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libx11-6 i386 2:1.8.12-1 [838 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libxrender1 i386 1:0.9.12-1 [29.0 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libtk8.6 i386 8.6.16-1 [834 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 itk3 i386 3.4.2-5 [29.4 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.47-1.1 [274 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 itk3 arm64 3.4.2-5 [26.1 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 x11proto-core-dev all 2024.1-1 [3312 B] Get:115 http://mirror.einval.org/debian unstable/main i386 libxau-dev i386 1:1.0.11-1 [24.0 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 libxdmcp-dev i386 1:1.1.5-1 [45.0 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 libxcb1-dev i386 1.17.0-2+b1 [186 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 libx11-dev i386 2:1.8.12-1 [926 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 libxext-dev i386 2:1.3.4-1+b3 [108 kB] Get:121 http://mirror.einval.org/debian unstable/main i386 libxss-dev i386 1:1.2.3-1+b3 [23.0 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 libexpat1-dev i386 2.7.1-1 [167 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libbrotli-dev i386 1.1.0-2+b7 [313 kB] Get:124 http://mirror.einval.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libpng-dev i386 1.6.47-1.1 [373 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libfreetype-dev i386 2.13.3+dfsg-1 [640 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libuuid1 i386 2.41-4 [38.9 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 uuid-dev i386 2.41-4 [49.2 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 libfontconfig-dev i386 2.15.0-2.3 [429 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 libfontconfig1-dev i386 2.15.0-2.3 [269 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 libxrender-dev i386 1:0.9.12-1 [40.3 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libxft-dev i386 2.3.6-1+b4 [74.8 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 tk8.6 arm64 8.6.16-1 [69.7 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 tk8.6-dev i386 8.6.16-1 [872 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 tk arm64 8.6.16 [4136 B] Get:139 http://mirror.einval.org/debian unstable/main i386 tk-dev i386 8.6.16 [3960 B] Get:140 http://mirror.einval.org/debian unstable/main i386 itk3-dev i386 3.4.2-5 [5576 B] Get:141 http://mirror.einval.org/debian unstable/main arm64 iwidgets4 all 4.1.1-4 [194 kB] Get:142 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-5 [35.3 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-5 [84.3 kB] Get:144 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-6 [9964 B] Get:145 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.7+dfsg-1 [309 kB] Get:146 http://mirror.einval.org/debian unstable/main i386 libssl3t64 i386 3.5.0-1 [2417 kB] Get:147 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-5 [355 kB] Get:148 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-5 [149 kB] Get:149 http://mirror.einval.org/debian unstable/main i386 libgssrpc4t64 i386 1.21.3-5 [63.6 kB] Get:150 http://mirror.einval.org/debian unstable/main i386 libkadm5clnt-mit12 i386 1.21.3-5 [44.2 kB] Get:151 http://mirror.einval.org/debian unstable/main i386 libkdb5-10t64 i386 1.21.3-5 [45.6 kB] Get:152 http://mirror.einval.org/debian unstable/main i386 libkadm5srv-mit12 i386 1.21.3-5 [57.9 kB] Get:153 http://mirror.einval.org/debian unstable/main i386 krb5-multidev i386 1.21.3-5 [126 kB] Get:154 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.2.0-19 [2605 kB] Get:155 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.2.0-19 [7648 B] Get:156 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.3.0+dfsg-3 [572 kB] Get:157 http://mirror.einval.org/debian unstable/main i386 libnettle8t64 i386 3.10.1-1 [318 kB] Get:158 http://mirror.einval.org/debian unstable/main i386 libhogweed6t64 i386 3.10.1-1 [338 kB] Get:159 http://mirror.einval.org/debian unstable/main i386 libunistring5 i386 1.3-2 [471 kB] Get:160 http://mirror.einval.org/debian unstable/main i386 libidn2-0 i386 2.3.8-2 [110 kB] Get:161 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.8-2 [21.6 kB] Get:162 http://mirror.einval.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get:163 http://mirror.einval.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get:164 http://mirror.einval.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get:165 http://mirror.einval.org/debian unstable/main i386 libdb5.3t64 i386 5.3.28+dfsg2-9 [767 kB] Get:166 http://mirror.einval.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB] Get:167 http://mirror.einval.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB] Get:168 http://mirror.einval.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-2 [206 kB] Get:169 http://mirror.einval.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1.1 [83.1 kB] Get:170 http://mirror.einval.org/debian unstable/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB] Get:171 http://mirror.einval.org/debian unstable/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB] Get:172 http://mirror.einval.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB] Get:173 http://mirror.einval.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get:174 http://mirror.einval.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get:175 http://mirror.einval.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get:176 http://mirror.einval.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.13.0-5 [421 kB] Get:177 http://mirror.einval.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Get:178 http://mirror.einval.org/debian unstable/main i386 libunbound8 i386 1.22.0-1+b1 [633 kB] Get:179 http://mirror.einval.org/debian unstable/main i386 libgnutls-dane0t64 i386 3.8.9-2 [453 kB] Get:180 http://mirror.einval.org/debian unstable/main i386 libgnutls-openssl27t64 i386 3.8.9-2 [453 kB] Get:181 http://mirror.einval.org/debian unstable/main i386 libidn2-dev i386 2.3.8-2 [104 kB] Get:182 http://mirror.einval.org/debian unstable/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB] Get:183 http://mirror.einval.org/debian unstable/main i386 libtasn1-6-dev i386 4.20.0-2 [103 kB] Get:184 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.2.0-19 [765 kB] Get:185 http://mirror.einval.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB] Get:186 http://mirror.einval.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB] Get:187 http://mirror.einval.org/debian unstable/main i386 nettle-dev i386 3.10.1-1 [1335 kB] Get:188 http://mirror.einval.org/debian unstable/main i386 libgnutls28-dev i386 3.8.9-2 [1464 kB] Get:189 http://mirror.einval.org/debian unstable/main i386 libkrb5-dev i386 1.21.3-5 [16.1 kB] Get:190 http://mirror.einval.org/debian unstable/main i386 libldap-dev i386 2.6.9+dfsg-2 [332 kB] Get:191 http://mirror.einval.org/debian unstable/main i386 libnghttp2-dev i386 1.64.0-1.1 [125 kB] Get:192 http://mirror.einval.org/debian unstable/main i386 libnghttp3-dev i386 1.8.0-1 [104 kB] Get:193 http://mirror.einval.org/debian unstable/main i386 libngtcp2-crypto-gnutls-dev i386 1.11.0-1 [34.9 kB] Get:194 http://mirror.einval.org/debian unstable/main i386 libngtcp2-dev i386 1.11.0-1 [215 kB] Get:195 http://mirror.einval.org/debian unstable/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Get:196 http://mirror.einval.org/debian unstable/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Get:197 http://mirror.einval.org/debian unstable/main i386 libssl-dev i386 3.5.0-1 [2996 kB] Get:198 http://mirror.einval.org/debian unstable/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get:199 http://mirror.einval.org/debian unstable/main i386 libzstd-dev i386 1.5.7+dfsg-1 [377 kB] Get:200 http://mirror.einval.org/debian unstable/main i386 libcurl4-gnutls-dev i386 8.13.0-5 [555 kB] Get:201 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.2.0-19 [138 kB] Get:202 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.2.0-19 [27.4 kB] Get:203 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.2.0-19 [1054 kB] Get:204 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.2.0-19 [231 kB] Get:205 http://mirror.einval.org/debian unstable/main i386 libgcc-14-dev i386 14.2.0-19 [2581 kB] Get:206 http://mirror.einval.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB] Get:207 http://mirror.einval.org/debian unstable/main i386 libhtscodecs-dev i386 1.6.1-2 [2974 kB] Get:208 http://mirror.einval.org/debian unstable/main i386 liblzma5 i386 5.8.1-1 [320 kB] Get:209 http://mirror.einval.org/debian unstable/main i386 liblzma-dev i386 5.8.1-1 [362 kB] Get:210 http://mirror.einval.org/debian unstable/main i386 libtinfo6 i386 6.5+20250216-2 [350 kB] Get:211 http://mirror.einval.org/debian unstable/main i386 libncurses6 i386 6.5+20250216-2 [112 kB] Get:212 http://mirror.einval.org/debian unstable/main i386 libncursesw6 i386 6.5+20250216-2 [148 kB] Get:213 http://mirror.einval.org/debian unstable/main i386 libncurses-dev i386 6.5+20250216-2 [505 kB] Get:214 http://mirror.einval.org/debian unstable/main i386 libstaden-read14t64 i386 1.15.0-1.1+b2 [289 kB] Get:215 http://mirror.einval.org/debian unstable/main i386 libstaden-read-dev i386 1.15.0-1.1+b2 [372 kB] Get:216 http://mirror.einval.org/debian unstable/main i386 libstdc++-14-dev i386 14.2.0-19 [2443 kB] Get:217 http://mirror.einval.org/debian unstable/main arm64 tklib all 0.9-1 [1749 kB] Preconfiguring packages ... 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Unpacking libstaden-read-dev:i386 (1.15.0-1.1+b2) ... Selecting previously unselected package libstdc++-14-dev:i386. Preparing to unpack .../214-libstdc++-14-dev_14.2.0-19_i386.deb ... Unpacking libstdc++-14-dev:i386 (14.2.0-19) ... Selecting previously unselected package tklib. Preparing to unpack .../215-tklib_0.9-1_all.deb ... Unpacking tklib (0.9-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:i386. Preparing to unpack .../216-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:i386 (14.2.0-19) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.44-3) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up gcc-14-i686-linux-gnu-base:arm64 (14.2.0-19cross1) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up file (1:5.46-5) ... Setting up libfakeroot:arm64 (1.37.1.1-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 26 12:25:49 UTC 2025. Universal Time is now: Sat Apr 26 12:25:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.37.1.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up xtrans-dev (1.4.0-1) ... Setting up linux-libc-dev-i386-cross (6.12.17-1cross2) ... Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.47-1.1) ... Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libc6-i386-cross (2.41-6cross2) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cpp-14-i686-linux-gnu (14.2.0-19cross1) ... Setting up libquadmath0-i386-cross (14.2.0-19cross1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up tcl8.6 (8.6.16+dfsg-1) ... Setting up gettext (0.23.1-1) ... Setting up libxrender1:arm64 (1:0.9.12-1) ... Setting up libtool (2.5.4-4) ... Setting up libatomic1-i386-cross (14.2.0-19cross1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up itcl3:arm64 (3.4.4-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libgomp1-i386-cross (14.2.0-19cross1) ... Setting up libc6-dev-i386-cross (2.41-6cross2) ... Setting up pkgconf:i386 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (14.2.0-19cross1) ... Setting up dh-autoreconf (20) ... 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Setting up libkrb5-dev:i386 (1.21.3-5) ... Setting up tk-dev:i386 (8.6.16) ... Setting up libcurl4-gnutls-dev:i386 (8.13.0-5) ... Setting up libstaden-read-dev:i386 (1.15.0-1.1+b2) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-7 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-i386-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-i386-cross_14.2.0-19cross1 linux-libc-dev_6.12.25-1 Package versions: apt_3.0.1 apt-utils_3.0.1 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 binutils-i686-linux-gnu_2.44-3 bsdextrautils_2.41-4 bsdutils_1:2.41-4 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.7-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-14-i686-linux-gnu_14.2.0-19cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-i686-linux-gnu_4:14.2.0-1 crossbuild-essential-i386_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.22 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1.1-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig-config_2.15.0-2.3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-14-i686-linux-gnu_14.2.0-19cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-i686-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-i686-linux-gnu_14.2.0-19cross1 gcc-14-i686-linux-gnu-base_14.2.0-19cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-i686-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 itcl3_3.4.4-3 itcl3-dev_3.4.4-3 itk3_3.4.2-5 itk3-dev_3.4.2-5 iwidgets4_4.1.1-4 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-i386-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-i386-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-4 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-7 libc-dev-bin_2.41-7 libc6_2.41-7 libc6-dev_2.41-7 libc6-dev-i386-cross_2.41-6cross2 libc6-i386-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-6 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.13.0-5 libcurl4-gnutls-dev_8.13.0-5 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.1-1 libexpat1-dev_2.7.1-1 libfakeroot_1.37.1.1-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig-dev_2.15.0-2.3 libfontconfig1_2.15.0-2.3 libfontconfig1-dev_2.15.0-2.3 libfreetype-dev_2.13.3+dfsg-1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-i386-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-i386-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-i386-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhtscodecs-dev_1.6.1-2 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-i386-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblastlog2-2_2.41-4 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma-dev_5.8.1-1 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-4 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp2-dev_1.64.0-1.1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpng-dev_1.6.47-1.1 libpng16-16t64_1.6.47-1.1 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 libquadmath0-i386-cross_14.2.0-19cross1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-4 libsqlite3-0_3.46.1-3 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.0-1 libssl3t64_3.5.0-1 libstaden-read-dev_1.15.0-1.1+b2 libstaden-read14t64_1.15.0-1.1+b2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-i386-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-i386-cross_14.2.0-19cross1 libsystemd0_257.5-2 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtcl8.6_8.6.16+dfsg-1 libtinfo6_6.5+20250216-2 libtk8.6_8.6.16-1 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-i386-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.5-2 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.41-4 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxft-dev_2.3.6-1+b4 libxft2_2.3.6-1+b4 libxml2_2.12.7+dfsg+really2.9.14-0.4 libxrender-dev_1:0.9.12-1 libxrender1_1:0.9.12-1 libxss-dev_1:1.2.3-1+b3 libxss1_1:1.2.3-1+b3 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.25-1 linux-libc-dev-i386-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.41-4 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.0-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.1-1 openssl-provider-legacy_3.5.0-1 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.25 sqv_1.3.0-1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tcl_8.6.16 tcl-dev_8.6.16 tcl8.6_8.6.16+dfsg-1 tcl8.6-dev_8.6.16+dfsg-1 tk_8.6.16 tk-dev_8.6.16 tk8.6_8.6.16-1 tk8.6-dev_8.6.16-1 tklib_0.9-1 tzdata_2025b-2 util-linux_2.41-4 uuid-dev_2.41-4 x11-common_1:7.7+24 x11proto-core-dev_2024.1-1 x11proto-dev_2024.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden Binary: staden, staden-common Architecture: any all Version: 2.0.0+b11-5 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://sourceforge.net/projects/staden/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/staden Vcs-Git: https://salsa.debian.org/med-team/staden.git Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev Package-List: staden deb science optional arch=any staden-common deb science optional arch=all Checksums-Sha1: a51f0a004961511734a05fd54d8b2b1b0cfd6e32 4754651 staden_2.0.0+b11.orig.tar.gz a770dce5dc8fb2dad9e1e8a8a85ec4be8ef3b8ac 16800 staden_2.0.0+b11-5.debian.tar.xz Checksums-Sha256: cd7ee17626c25bc845ebd3f6311b5a538815fb73a0dfef2393001bf579ac9649 4754651 staden_2.0.0+b11.orig.tar.gz 34008f109d1a4c97659213035fe72c0059d9e4caa80b65d6e972e0055fc32ecf 16800 staden_2.0.0+b11-5.debian.tar.xz Files: ae59565ded12242c4c2728fbf2e185a7 4754651 staden_2.0.0+b11.orig.tar.gz 532a8c853e97a38ddbc4e95e93525f66 16800 staden_2.0.0+b11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXxuwcACgkQPCZ2P2xn 5uI/qw//dVWXAscRvuRAcyK8UpglQNEVAJLZJg7DO+832OyOfd84naHsh610D6yP xNL4dOhyV6K+2fm62wF72Hx9AY/vyXRMaiEirnxm4NskiNkXU5lN51hPnyMeEAz+ yTR4K65U7Dw7TchgIZ2YZ5DSk6k2Yxcr3hCSOBmvr9RRm3YuWVMelCo1uuPyTlCj S4NZ2wY+afWXvp4vDb0KUed8BeuX1XEomACWUJpXG8W6d5ZULPXN9ShRCuuDczoL aQ3IQC+TeKSU03x6jnJEyyEpRcUBv7F/+rauAQ+TGZGKqcc5746UkHhQQQaGi4aa QTU9z66CoQ/EQysdx+oMXJYgiepwIdjRhmINeOD25c62oAMktmRzgQZs3O+YYuEo ao/HxNR3/o1DACvXbM47Qhe7OSsz/hlBFIiiuLQm9/3Kz6NXnxbN/dKbBA1MZawZ Cijb6yOPJu4b0UqTv8khNnCK2EEM0pztLM61ntOhgS1VJfi2xzMDPAMJ/Vie7QRV snwTGa+vGINPhVMsCwXPzUeXz4/Dj52j3JV5Ty8dP65tuF/Po9OjTRkMDklFyGcz a0Gw/jsCAwqPVwvpli1b4jwGe0NqROF7SmLY+35+FBc3glZC2TShD6QzfYiXgNWY zFtUxsljJhcCD1htF4+6TIO2D8v7fijtaFRPlXkCbI3Wl9zBpNg= =Q0m3 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./staden_2.0.0+b11-5.dsc: unsupported subcommand dpkg-source: info: extracting staden in /<> dpkg-source: info: unpacking staden_2.0.0+b11.orig.tar.gz dpkg-source: info: unpacking staden_2.0.0+b11-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_help_menus_work.patch dpkg-source: info: applying fix_tcl_path.patch dpkg-source: info: applying fix_awk.patch dpkg-source: info: applying enable_setting_stadenroot.patch dpkg-source: info: applying include_xalloc.patch dpkg-source: info: applying use_mkstemp_instead_of_tmpnam.patch dpkg-source: info: applying fix_implicit_declaration.patch dpkg-source: info: applying autoconfig.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' make spotless || true make[2]: Entering directory '/<>' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/<>' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ --with-itcl=/usr/lib/tcltk/i386-linux-gnu \ --with-itk=/usr/lib/tcltk/i386-linux-gnu ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --with-itcl=/usr/lib/tcltk/i386-linux-gnu --with-itk=/usr/lib/tcltk/i386-linux-gnu checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.13.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for -Wdate-time -D_FORTIFY_SOURCE=2 option for large files... -D_FILE_OFFSET_BITS=64 checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... no checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... no checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.1.0-28-arm64 checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... long long checking for struct dirent64... no checking for struct stat64... no checking for open64... yes checking for lseek64... yes checking for off64_t... no checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/i386-linux-gnu/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/i386-linux-gnu/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/i386-linux-gnu/itcl3.4 Itk: /usr/lib/tcltk/i386-linux-gnu/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc all make[2]: Entering directory '/<>/Misc' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o crash.o -c crash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o date.o -c date.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o files.o -c files.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o find.o -c find.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o shell.o -c shell.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strings.o -c strings.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o error.o -c error.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array.o -c array.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o locks.o -c locks.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c parse_db.c: In function ‘parse_entry’: parse_db.c:234:66: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from parse_db.c:19: In function ‘sprintf’, inlined from ‘parse_entry’ at parse_db.c:234:7: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c mkdir -p /<>/lib 2>/dev/null touch /<>/lib/.dir i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils all make[2]: Entering directory '/<>/tk_utils' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c tkTraceDisp.c: In function ‘trace_draw_numbers’: tkTraceDisp.c:746:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from tkTraceDisp.c:2: In function ‘sprintf’, inlined from ‘trace_draw_numbers’ at tkTraceDisp.c:746:6: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c capture.c: In function ‘tcl_capture’: capture.c:53:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils all make[2]: Entering directory '/<>/text_utils' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc make[2]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/<>/seq_utils' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c renz_utils.c: In function ‘SetREnzColour’: renz_utils.c:1049:35: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from renz_utils.c:3: In function ‘sprintf’, inlined from ‘SetREnzColour’ at renz_utils.c:1049:5: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c sequence_formats.c: In function ‘get_embl_format_seq’: sequence_formats.c:729:29: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function ‘add_feat’: sequence_formats.c:481:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o edge.o -c edge.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libseq_utils.so align.o align_lib_old.o align_ss.o align_ss2.o align_sv.o dna_utils.o genetic_code.o renz_utils.o sequence_formats.o scramble.o base_comp.o open_reading_frames.o edge.o search_utils.o align_lib.o read_matrix.o filter_words.o -ltext_utils -lmisc -lm make[2]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib all make[2]: Entering directory '/<>/mutlib' i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o basecall.o -c basecall.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller.o -c caller.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_snr.o -c caller_snr.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_base.o -c caller_base.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_level.o -c caller_level.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dnatable.o -c dnatable.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o muttag.o -c muttag.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag.o -c mutationtag.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag_utils.o -c mutationtag_utils.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o pathutil.o -c pathutil.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o peakcall.o -c peakcall.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o stringlist.o -c stringlist.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tagarray.o -c tagarray.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trace.o -c trace.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o validate.o -c validate.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_align_lib.o -c sp_align_lib.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_alignment.o -c sp_alignment.cpp sp_alignment.cpp: In function ‘void sp::store_hashn(Hash*)’: sp_alignment.cpp:754:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_hash_lib.o -c sp_hash_lib.cpp sp_hash_lib.cpp: In function ‘int sp::hash_word8n(char*, int*, int, int, short unsigned int*)’: sp_hash_lib.cpp:57:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 57 | register int i; | ^ sp_hash_lib.cpp:58:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:58:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:58:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:59:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int unsigned short luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq8n(char*, int*, int, int)’: sp_hash_lib.cpp:99:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘int sp::hash_word4n(char*, int*, int, int, unsigned char*)’: sp_hash_lib.cpp:156:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 156 | register int i; | ^ sp_hash_lib.cpp:157:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:157:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:157:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:158:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 158 | register char unsigned luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq4n(char*, int*, int, int)’: sp_hash_lib.cpp:197:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘void sp::remdup(int*, int*, int*, int*)’: sp_hash_lib.cpp:411:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 411 | register int i; | ^ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_matrix.o -c sp_matrix.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff.o -c tracediff.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_helper.o -c tracediff_helper.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_mutations.o -c tracediff_mutations.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_parameters.o -c tracediff_parameters.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_validate.o -c tracediff_validate.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign.o -c tracealign.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_cache.o -c tracealign_cache.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_helper.o -c tracealign_helper.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_interpolate.o -c tracealign_interpolate.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_preprocess.o -c tracealign_preprocess.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_validate.o -c tracealign_validate.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan.o -c mutscan.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_helper.o -c mutscan_helper.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_validate.o -c mutscan_validate.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_analysis.o -c mutscan_analysis.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_preprocess.o -c mutscan_preprocess.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_parameters.o -c mutscan_parameters.cpp cp /<>/./mutlib/mutlib.def 2>&- make[2]: [/<>/./mutlib/Makefile:81: /<>/lib/libmutlib.so] Error 1 (ignored) i686-linux-gnu-g++ -shared -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmutlib.so align.o basecall.o caller.o caller_snr.o caller_base.o caller_level.o dnatable.o muttag.o mutationtag.o mutationtag_utils.o pathutil.o peakcall.o stringlist.o tagarray.o trace.o validate.o read_matrix.o sp_align_lib.o sp_alignment.o sp_hash_lib.o sp_matrix.o tracediff.o tracediff_helper.o tracediff_mutations.o tracediff_parameters.o tracediff_validate.o tracealign.o tracealign_cache.o tracealign_helper.o tracealign_interpolate.o tracealign_preprocess.o tracealign_validate.o mutscan.o mutscan_helper.o mutscan_validate.o mutscan_analysis.o mutscan_preprocess.o mutscan_parameters.o -lseq_utils -ltk_utils -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm make[2]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi all make[2]: Entering directory '/<>/abi' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o abiIO.o -c abiIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf all make[2]: Entering directory '/<>/alf' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./alf -I/<>/./Misc -I/<> -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c alfsplit.c: In function ‘main’: alfsplit.c:347:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘readIndexEntry’: alfsplit.c:129:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g all make[2]: Entering directory '/<>/g' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc make[2]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev all make[2]: Entering directory '/<>/trev' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 all make[2]: Entering directory '/<>/primer3' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src all make[2]: Entering directory '/<>/primer3/src' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c primer3_main.c: In function ‘pr_safe_malloc’: primer3_main.c:520:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c: In function ‘boulder_print_oligos’: primer3_main.c:416:32: warning: ‘%d’ directive writing between 1 and 8 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 56512729] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from primer3_main.c:7: In function ‘sprintf’, inlined from ‘boulder_print_oligos’ at primer3_main.c:416:7: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 10 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function ‘main’: primer3_main.c:234:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function ‘boulder_print_pairs’, inlined from ‘main’ at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function ‘sprintf’, inlined from ‘boulder_print_pairs’ at primer3_main.c:234:7, inlined from ‘main’ at primer3_main.c:109:3: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 all make[2]: Entering directory '/<>/gap4' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-local.o -c gap-local.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-remote.o -c gap-remote.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-if.o -c gap-if.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-init.o -c gap-init.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-dbstruct.o -c gap-dbstruct.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-create.o -c gap-create.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-io.o -c gap-io.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO1.o -c IO1.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io-reg.o -c io-reg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c actf.c: In function ‘actf_lock’: actf.c:246:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | write(fd, db_path, strlen(db_path)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO2.o -c IO2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o seqInfo.o -c seqInfo.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o parse_ft.o -c parse_ft.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO3.o -c IO3.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_utils.o -c io_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_handle.o -c io_handle.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-tcl.o -c gap-tcl.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap_cmds.o -c newgap_cmds.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o bubbl3.o -c bubbl3.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dbcheck.o -c dbcheck.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clones.o -c clones.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o extract.o -c extract.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o preass.o -c preass.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list.o -c list.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reactions.o -c reactions.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o probe.o -c probe.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template.o -c template.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘template_callback’: template_display.c:2354:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 2354 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, t->frame, | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from template_display.c:2: In function ‘sprintf’, inlined from ‘template_callback’ at template_display.c:2354:3: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ruler_display.o -c ruler_display.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash.o -c hash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_array.o -c gap_array.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o show_relationships.o -c show_relationships.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_assemble.o -c auto_assemble.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c readpair.c: In function ‘readpair_obj_func’: readpair.c:175:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 989 and 999 [-Wformat-overflow=] 175 | sprintf(cmd, "CreateTemplateDisplay %d {%s}", | ^~ 176 | *handle, c_list); | ~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from readpair.c:18: In function ‘sprintf’, inlined from ‘readpair_obj_func’ at readpair.c:175:3: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1060 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o complement.o -c complement.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dstrand.o -c dstrand.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo_sel.o -c oligo_sel.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o alter_rel.o -c alter_rel.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stop_codon.o -c stop_codon.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o assemble_direct.o -c assemble_direct.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU2.o -c tagU2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o mess.o -c mess.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db.o -c copy_db.c copy_db.c: In function ‘copy_read_name’: copy_db.c:118:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 118 | sprintf(num, "#%d", iter++); | ^~ copy_db.c:118:30: note: directive argument in the range [1, 2147483646] 118 | sprintf(num, "#%d", iter++); | ^~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from copy_db.c:1: In function ‘sprintf’, inlined from ‘copy_read_name’ at copy_db.c:118:3: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_order.o -c contig_order.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clip.o -c clip.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notes.o -c notes.c notes.c: In function ‘time_t2str’: notes.c:829:21: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 829 | sprintf(buf, "%s (%ld)", buf2, (long)t); | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from notes.c:11: In function ‘sprintf’, inlined from ‘time_t2str’ at notes.c:829:5: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 5 and 1038 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_display.o -c consistency_display.c consistency_display.c: In function ‘consistency_callback’: consistency_display.c:883:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 883 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, c->frame, | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from consistency_display.c:1: In function ‘sprintf’, inlined from ‘consistency_callback’ at consistency_display.c:883:3: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_canvas_box.o -c consistency_canvas_box.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o confidence_graph.o -c confidence_graph.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reading_coverage.o -c reading_coverage.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair_coverage.o -c readpair_coverage.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o strand_coverage.o -c strand_coverage.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_fragments.o -c find_fragments.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o vseqs.o -c vseqs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o legacy_f2c.o -c legacy_f2c.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o f2c.o -c f2c.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdUtils.o -c tkEdUtils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edInterface.o -c edInterface.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edUtils2.o -c edUtils2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU1.o -c tagU1.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o undo.o -c undo.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edExtend.o -c edExtend.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edCommands.o -c edCommands.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edMutations.o -c edMutations.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagEditor.o -c tagEditor.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o searchUtils.o -c searchUtils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:281:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:281:18: note: assuming directive output of 12 bytes 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:281:5: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_cons.o -c tman_cons.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_diff.o -c tman_diff.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contigEditor.o -c contigEditor.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o join.o -c join.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo.o -c oligo.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap.so -L/<>/lib gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o IO2.o seqInfo.o parse_ft.o IO3.o io_utils.o io_handle.o gap-tcl.o tk-io-reg.o gap_cli_arg.o gap_globals.o newgap_cmds.o init.o consen.o gap_hash.o qual.o qualIO.o bubbl3.o tagdb.o notedb.o active_tags.o dbcheck.o clones.o extract.o preass.o list.o reactions.o probe.o template.o template_display.o ruler_display.o gap_canvas_box.o hash.o gap_array.o show_relationships.o fij.o hash_lib.o do_fij.o auto_assemble.o dis_readings.o find_repeats.o break_contig.o quality_plot.o readpair.o contig_selector.o complement.o cs-object.o list_proc.o dstrand.o oligo_sel.o primlib.o alter_rel.o restriction_enzymes.o stop_codon.o assemble_direct.o check_assembly.o tagU2.o mess.o find_oligo.o copy_db.o contig_order.o clip.o notes.o consistency_display.o consistency_canvas_box.o confidence_graph.o reading_coverage.o readpair_coverage.o strand_coverage.o find_fragments.o vseqs.o legacy_f2c.o f2c.o shuffle_pads.o auto_break.o tkEditor.o tkEdNames.o tkEdUtils.o edInterface.o edUtils2.o tagU1.o undo.o edExtend.o edCommands.o edMutations.o tagEditor.o searchUtils.o tman_interface.o tman_display.o tman_cons.o tman_diff.o contigEditor.o join.o oligo.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltk_utils -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lg -lmutlib -lmisc -lprimer3 -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db_main.o -c copy_db_main.c copy_db_main.c: In function ‘main’: copy_db_main.c:86:9: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | scanf("%c", &ans); | ^~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o text-io-reg.o -c text-io-reg.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o copy_db gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o copy_db.o copy_db_main.o text-io-reg.o io_utils.o io_handle.o -lg -ltext_utils -lmisc -L/usr/lib/i386-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish all make[2]: Entering directory '/<>/prefinish' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish.o -c finish.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_hash.o -c finish_hash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_long.o -c finish_long.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_main.o -c finish_main.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_utils.o -c finish_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_walk.o -c finish_walk.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_reverse.o -c finish_reverse.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_filter.o -c finish_filter.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_pcr.o -c finish_pcr.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dust.o -c dust.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprefinish.so finish.o finish_hash.o finish_long.o finish_main.o finish_utils.o finish_walk.o finish_reverse.o finish_filter.o finish_pcr.o dust.o -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap -lprimer3 i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o insert_size_dist.o -c insert_size_dist.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o insert_size_dist insert_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/i386-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_size_dist.o -c read_size_dist.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_size_dist read_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/i386-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_conf_dist.o -c read_conf_dist.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_conf_dist read_conf_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/i386-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo all make[2]: Entering directory '/<>/haplo' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_tcl.o -c haplo_tcl.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_snps.o -c haplo_snps.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_split.o -c haplo_split.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_cons.o -c haplo_cons.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libhaplo.so haplo_tcl.o haplo_snps.o haplo_split.o haplo_cons.o -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba all make[2]: Entering directory '/<>/eba' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o qual.o -c qual.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o conf.o -c conf.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/<>/init_exp' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./init_exp -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o init_exp.o -c init_exp.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/<>/get_scf_field' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./get_scf_field -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc make[2]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin all make[2]: Entering directory '/<>/spin' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg.o -c seq_reg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg_cmds.o -c seq_reg_cmds.c seq_reg_cmds.c: In function ‘GetActiveSeqName’: seq_reg_cmds.c:919:32: warning: zero-length gnu_printf format string [-Wformat-zero-length] 919 | vTcl_SetResult(interp, ""); | ^~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o raster_cmds.o -c raster_cmds.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_raster.o -c seq_raster.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequtils.o -c sequtils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_results.o -c seq_results.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_sendto.o -c seq_sendto.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o spin_globals.o -c spin_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_plot_funcs.o -c seq_plot_funcs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed.o -c seqed.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqed.o -c tkSeqed.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedUtils.o -c tkSeqedUtils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedNames.o -c tkSeqedNames.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_write.o -c seqed_write.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqedInterface.o -c seqedInterface.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_translate.o -c seqed_translate.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_restriction_enzymes.o -c seqed_restriction_enzymes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_search.o -c seqed_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequence_pair_display.o -c sequence_pair_display.c sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:316:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 316 | sprintf(tmp, "%10d", i*10); | ^ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from /<>/./tk_utils/tkRaster.h:9, from seq_reg.h:6, from sequence_pair_display.c:4: In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:316:2: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:344:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 344 | sprintf(tmp, "%10d", i*10); | ^ In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:344:2: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o emboss_input_funcs.o -c emboss_input_funcs.c emboss_input_funcs.c: In function ‘read_emboss_data_file’: emboss_input_funcs.c:402:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:437:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fscanf(fp, "##Number %d\n", &data->n_data_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:444:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:470:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 470 | fscanf(fp, "##Number %d\n", &data->n_graph_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:477:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 477 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:518:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fscanf(fp, "%lf %lf\n", &pos, &p_array[i].score); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c: In function ‘init_emboss_stick_create’: emboss_input_funcs.c:658:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 658 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:659:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 659 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:660:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 660 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o readpam.o -c readpam.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o compare_spans.o -c compare_spans.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_hash.o -c sip_hash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_similar_spans.o -c sip_similar_spans.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_find_identity.o -c sip_find_identity.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_quick_scan.o -c sip_quick_scan.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_align.o -c sip_align.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_globals.o -c sip_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_cmds.o -c sip_cmds.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_results.o -c sip_results.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o rescan_matches.o -c rescan_matches.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o probs.o -c probs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sim.o -c sim.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_sim.o -c sip_sim.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_globals.o -c nip_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_cmds.o -c nip_cmds.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_base_comp.o -c nip_base_comp.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_gene_search.o -c nip_gene_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_trna_search.o -c nip_trna_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o codon_content.o -c codon_content.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_stop_codon.o -c nip_stop_codon.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trna_search.o -c trna_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o splice_search.o -c splice_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_splice_search.o -c nip_splice_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_string_search.o -c nip_string_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_wtmatrix_search.o -c nip_wtmatrix_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_restriction_enzymes.o -c nip_restriction_enzymes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_canvas_box.o -c nip_canvas_box.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dinuc_freqs.o -c dinuc_freqs.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libspin.so seq_reg.o seq_reg_cmds.o raster_cmds.o seq_raster.o sequtils.o seq_results.o seq_sendto.o spin_globals.o seq_plot_funcs.o seqed.o tkSeqed.o tkSeqedUtils.o tkSeqedNames.o seqed_write.o seqedInterface.o seqed_translate.o seqed_restriction_enzymes.o seqed_search.o sequence_pair_display.o emboss_input_funcs.o readpam.o compare_spans.o sip_hash.o sip_similar_spans.o sip_find_identity.o sip_quick_scan.o sip_align.o sip_globals.o sip_cmds.o sip_results.o rescan_matches.o probs.o sim.o sip_sim.o init.o nip_globals.o nip_cmds.o nip_base_comp.o nip_gene_search.o nip_trna_search.o codon_content.o nip_stop_codon.o trna_search.o splice_search.o nip_splice_search.o nip_string_search.o nip_wtmatrix_search.o nip_restriction_enzymes.o nip_canvas_box.o dinuc_freqs.o -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lseq_utils -lmisc make[2]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip all make[2]: Entering directory '/<>/vector_clip' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./vector_clip -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o vector_clip.o -c vector_clip.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o vector_clip vector_clip.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff all make[2]: Entering directory '/<>/tracediff' i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./tracediff -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp i686-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tracediff main.o -lmutlib -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq all make[2]: Entering directory '/<>/screen_seq' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./screen_seq -I/<>/./text_utils -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o screen_seq.o -c screen_seq.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o screen_seq screen_seq.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip all make[2]: Entering directory '/<>/qclip' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o qclip.o -c qclip.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o consen.o -c consen.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o qclip qclip.o consen.o seqInfo.o -ltext_utils -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip all make[2]: Entering directory '/<>/polyA_clip' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o polyA_clip.o -c polyA_clip.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o polyA_clip polyA_clip.o seqInfo.o -lseq_utils -ltext_utils -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops all make[2]: Entering directory '/<>/stops' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./stops -I/<>/./Misc -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -o stops.o -c stops.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o stops stops.o -ltext_utils -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for Pregap4. make[2]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights all make[2]: Entering directory '/<>/make_weights' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./make_weights -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o make_weights.o -c make_weights.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o make_weights make_weights.o -lseq_utils -ltext_utils -lmisc -lm -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz all make[2]: Entering directory '/<>/find_renz' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./find_renz -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o find_renz.o -c find_renz.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o find_renz find_renz.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for spin_emboss. make[2]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads all make[2]: Entering directory '/<>/copy_reads' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads_globals.o -c copy_reads_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads.o -c copy_reads.c copy_reads.c: In function ‘create_si_struct’: copy_reads.c:125:26: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 125 | sprintf(comment, "%s %s", tag_text, io_name(io)); | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from copy_reads.c:4: In function ‘sprintf’, inlined from ‘create_si_struct’ at copy_reads.c:125:5: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ copy_reads.c: In function ‘copy_reads’: copy_reads.c:409:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 409 | sprintf(comment, "%s %s", tag_text, io_name(io_to)); | ^~ In function ‘sprintf’, inlined from ‘copy_reads’ at copy_reads.c:409:6: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libcopy_reads.so copy_reads_globals.o copy_reads.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins all make[2]: Entering directory '/<>/hetins' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./hetins -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o hetins.o -c hetins.c i686-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan all make[2]: Entering directory '/<>/mutscan' i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o pathutil.o -c pathutil.cpp i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o stringlist.o -c stringlist.cpp i686-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o mutscan main.o pathutil.o stringlist.o -lmutlib -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert all make[2]: Entering directory '/<>/convert' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o list.o -c list.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o main.o -c main.c main.c: In function ‘get_db’: main.c:87:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(name, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:92:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(version, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapIO.o -c dapIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapDB.o -c dapDB.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapIO.o -c bapIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapDB.o -c bapDB.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o gapDB.o -c gapDB.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o process.o -c process.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o flat_sd.o -c flat_sd.c i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o staden_convert list.o main.o dapIO.o dapDB.o bapIO.o bapDB.o gapDB.o process.o flat_sd.o -lm -lgap -lg -lprimer3 -lmutlib -ltk_utils -lseq_utils -lmisc -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 all make[2]: Entering directory '/<>/gap5' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_iface_g.o -c tg_iface_g.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o b+tree2.o -c b+tree2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hache_table.o -c hache_table.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_gio.o -c tg_gio.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_cache.o -c tg_cache.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_contig.o -c tg_contig.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_sequence.o -c tg_sequence.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_track.o -c tg_track.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_bin.o -c tg_bin.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_utils.o -c tg_utils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_register.o -c tg_register.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tracks.o -c tg_tracks.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_anno.o -c tg_anno.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_library.o -c tg_library.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_scaffold.o -c tg_scaffold.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_check.o -c tg_check.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tcl.o -c tg_tcl.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index.o -c tg_index.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap5_cmds.o -c newgap5_cmds.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap4_compat.o -c gap4_compat.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkAppInit.o -c tkAppInit.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consensus.o -c consensus.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_depth.o -c read_depth.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_range.o -c gap_range.c gap_range.c: In function ‘gap_range_x’: gap_range.c:310:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 310 | if (!HashTableSearch(lib_recs, (char *)r->library_rec, | ^ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘configure_template’: template_display.c:374:41: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 374 | HashTableAdd(tdi->lib_recs, (char *)r, sizeof(r), hd, NULL); | ^ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depth_track.o -c depth_track.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_draw.o -c template_draw.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tag_plot.o -c tag_plot.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_contigs.o -c export_contigs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_snps.o -c export_snps.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%lld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /<>/./gap5/hache_table.h:5, from /<>/./gap5/g-struct.h:24, from /<>/./gap5/g.h:1, from tg_struct.h:4, from tg_gio.h:4, from io_utils.h:6, from find_oligo.c:4: In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o import_gff.o -c import_gff.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o str_finder.o -c str_finder.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_extend.o -c contig_extend.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_haplotypes.o -c find_haplotypes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o interval_tree.o -c interval_tree.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-alloc.o -c g-alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_view.o -c editor_view.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_join.o -c editor_join.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_search.o -c editor_search.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:279:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:279:18: note: assuming directive output of 12 bytes 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:279:5: /usr/i686-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_oligo.o -c editor_oligo.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index_common.o -c tg_index_common.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o baf.o -c baf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maq.o -c maq.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maqmap.o -c maqmap.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_index.o -c sam_index.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_pileup.o -c sam_pileup.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ace.o -c ace.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o caf.o -c caf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fasta.o -c fasta.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o afg.o -c afg.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depad_seq_tree.o -c depad_seq_tree.c i686-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap5.so -L/<>/lib newgap5_cmds.o gap4_compat.o gap_hash.o hash_lib.o qual.o qualIO.o gap_globals.o tagdb.o init.o notedb.o active_tags.o list_proc.o gap-error.o stack_dump.o tk-io-reg.o tkAppInit.o consen.o contig_selector.o cs-object.o find_repeats.o readpair.o check_assembly.o consensus.o read_depth.o gap_range.o template_display.o depth_track.o template_draw.o quality_plot.o tag_plot.o fij.o do_fij.o break_contig.o dis_readings.o export_contigs.o export_snps.o find_oligo.o import_gff.o shuffle_pads.o str_finder.o restriction_enzymes.o gap_canvas_box.o contig_extend.o auto_break.o find_haplotypes.o interval_tree.o g-files.o g-db.o g-struct.o g-error.o g-alloc.o g-io.o g-connect.o g-request.o tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o editor_view.o editor_join.o editor_search.o tkEdNames.o tkEditor.o tman_interface.o tman_display.o primlib.o editor_oligo.o tg_index_common.o baf.o maq.o maqmap.o sam_index.o sam_pileup.o ace.o caf.o fasta.o afg.o depad_seq_tree.o -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: tg_index_common.o: in function `bttmp_file_open': ./gap5/./gap5/tg_index_common.c:105:(.text+0x643): warning: the use of `tmpnam' is dangerous, better use `mkstemp' i686-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tg_index.bin tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o tg_index.o -lgap5 -L/usr/lib/i386-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/i386-linux-gnu -ltk8.6 -L/usr/lib/i386-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc -lm /usr/lib/gcc-cross/i686-linux-gnu/14/../../../../i686-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts all make[2]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for scripts. make[2]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data all make[2]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for data. make[2]: Leaving directory '/<>/data' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/staden-2.0.0\+b11/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/lib/i386-linux-gnu/staden mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/share/staden/etc mkdir -p /<>/debian/tmp/usr/share/staden mkdir -p /<>/debian/tmp/usr/share/staden/scripts mkdir -p /<>/debian/tmp/usr/share/staden/tcl mkdir -p /<>/debian/tmp/usr/share/doc mkdir -p /<>/debian/tmp/usr/share/man cp shlib.conf /<>/debian/tmp/usr/share/staden/etc cp ./staden.profile /<>/debian/tmp/usr/share/staden make JOB=install make[3]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc install make[4]: Entering directory '/<>/Misc' cp /<>/lib/libmisc.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden make[4]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils install make[4]: Entering directory '/<>/tk_utils' cp /<>/lib/libtk_utils.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden mkdir /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/*.tcl /<>/./tk_utils/tclIndex /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/stash /<>/debian/tmp/usr/bin cp /<>/./tk_utils/2bars_*.bmp /<>/./tk_utils/help_config /<>/./tk_utils/tk_utilsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils install make[4]: Entering directory '/<>/text_utils' cp /<>/lib/libtext_utils.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden make[4]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils install make[4]: Entering directory '/<>/seq_utils' cp /<>/lib/libseq_utils.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp /<>/./seq_utils/align_lib_nuc_matrix /<>/./seq_utils/nuc_matrix /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib install make[4]: Entering directory '/<>/mutlib' cp /<>/lib/libmutlib.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden make[4]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi install make[4]: Entering directory '/<>/abi' cp getABISampleName getABIcomment getABIdate getABIfield /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf install make[4]: Entering directory '/<>/alf' cp alfsplit /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g install make[4]: Entering directory '/<>/g' cp /<>/lib/libg.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden make[4]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev install make[4]: Entering directory '/<>/trev' install trev /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trev.tcl /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trevrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 install make[4]: Entering directory '/<>/primer3' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src install make[4]: Entering directory '/<>/primer3/src' cp /<>/lib/libprimer3.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden make[4]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 install make[4]: Entering directory '/<>/gap4' cp copy_db /<>/debian/tmp/usr/bin install gap4 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/./gap4/*.tcl /<>/./gap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/lib/libgap.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp /<>/./gap4/gaprc /<>/./gap4/gaprc_menu_full /<>/./gap4/gaprc_menu_mito /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/GTAGDB /<>/./gap4/NOTEDB /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/cap2rc /<>/./gap4/cap3rc /<>/./gap4/fak2rc /<>/./gap4/phraprc /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/*.bitmap /<>/./gap4/*.gif /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish install make[4]: Entering directory '/<>/prefinish' mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/*.tcl /<>/./prefinish/*.itcl /<>/./prefinish/*.itk /<>/./prefinish/help /<>/./prefinish/args.template /<>/./prefinish/tclIndex /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/config.prefinish /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/lib/libprefinish.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden install prefinish /<>/debian/tmp/usr/bin cp /<>/./prefinish/finish_sanger /<>/./prefinish/finish_cDNA /<>/./prefinish/finish_cDNA_ends_only \ /<>/debian/tmp/usr/share/staden/scripts mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/rules/*.rule /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/config.prefinish /<>/./prefinish/prefinishrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo install make[4]: Entering directory '/<>/haplo' mkdir /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/./haplo/*.tcl /<>/./haplo/tclIndex /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/lib/libhaplo.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp /<>/./haplo/haplorc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba install make[4]: Entering directory '/<>/eba' cp eba /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp install make[4]: Entering directory '/<>/init_exp' cp init_exp /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field install make[4]: Entering directory '/<>/get_scf_field' cp get_scf_field /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin install make[4]: Entering directory '/<>/spin' install spin /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/./spin/*.tcl /<>/./spin/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/lib/libspin.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp /<>/./spin/*.wts /<>/./spin/niprc /<>/./spin/siprc /<>/./spin/spinrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip install make[4]: Entering directory '/<>/vector_clip' cp vector_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff install make[4]: Entering directory '/<>/tracediff' cp tracediff /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq install make[4]: Entering directory '/<>/screen_seq' cp screen_seq /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip install make[4]: Entering directory '/<>/qclip' cp qclip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip install make[4]: Entering directory '/<>/polyA_clip' cp polyA_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops install make[4]: Entering directory '/<>/stops' cp stops /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 install make[4]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' install pregap4 /<>/debian/tmp/usr/bin/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4 cp /<>/./pregap4/*.tcl /<>/./pregap4/widget_licence /<>/./pregap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/modules/*.p4m /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules cp /<>/./pregap4/templates/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates cp: cannot stat '/<>/./pregap4/templates/*.p4t': No such file or directory make[4]: [/<>/./pregap4/Makefile:42: install] Error 1 (ignored) cp /<>/./pregap4/naming_schemes/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/pregap4rc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights install make[4]: Entering directory '/<>/make_weights' cp make_weights /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz install make[4]: Entering directory '/<>/find_renz' cp find_renz /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss install make[4]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/*.tcl /<>/./spin_emboss/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/create_emboss_files /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp /<>/./spin_emboss/acdtcl/* /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp: cannot stat '/<>/./spin_emboss/acdtcl/*': No such file or directory make[4]: [/<>/./spin_emboss/Makefile:30: install] Error 1 (ignored) cp /<>/./spin_emboss/emboss_menu /<>/./spin_emboss/spin_embossrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads install make[4]: Entering directory '/<>/copy_reads' mkdir /<>/debian/tmp/usr/share/staden/tcl/copy_reads install copy_reads /<>/debian/tmp/usr/bin cp /<>/./copy_reads/copy_reads.tcl /<>/./copy_reads/copy_reads_main.tcl /<>/./copy_reads/tclIndex /<>/debian/tmp/usr/share/staden/tcl/copy_reads cp /<>/lib/libcopy_reads.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp /<>/./copy_reads/copy_readsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins install make[4]: Entering directory '/<>/hetins' cp hetins /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan install make[4]: Entering directory '/<>/mutscan' cp mutscan /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert install make[4]: Entering directory '/<>/convert' cp staden_convert /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 install make[4]: Entering directory '/<>/gap5' install gap5 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/*.tcl /<>/./gap5/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/../gap4/acd2tag.tcl /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/gap5rc /<>/./gap5/gap5rc_menu_full /<>/debian/tmp/usr/share/staden/etc cp /<>/lib/libgap5.so /<>/debian/tmp/usr/lib/i386-linux-gnu/staden cp tg_index.bin /<>/debian/tmp/usr/bin install tg_index /<>/debian/tmp/usr/bin install gap5_cmd /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts install make[4]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' cp /<>/./scripts/assemble4 /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta-split /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta2exp /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/splitseq_da /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/staden_help /<>/debian/tmp/usr/share/staden/scripts make[4]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data install make[4]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/etc/alus cp /<>/./data/alus/* /<>/debian/tmp/usr/share/staden/etc/alus mkdir /<>/debian/tmp/usr/share/staden/etc/blast_data cp /<>/./data/blast_data/* /<>/debian/tmp/usr/share/staden/etc/blast_data mkdir /<>/debian/tmp/usr/share/staden/etc/gcodes cp /<>/./data/gcodes/* /<>/debian/tmp/usr/share/staden/etc/gcodes mkdir /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/vectors/* /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/RENZYM.* /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/renzyme_bairoch /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/m13mp18_primers /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/vector_primer /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/pam250 /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/data' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # Remove file causing lintian errors that is targeting at windows find debian -name help_windows.tcl -delete # Remove some empty directories find debian -type d -empty -name acdtcl -delete find debian -type d -empty -name templates -delete # Build system is not prepared for multi-arch mv /<>/debian/tmp/usr/lib/i386-linux-gnu/* /<>/debian/tmp/usr/lib rmdir /<>/debian/tmp/usr/lib/i386-linux-gnu make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installdocs: warning: Could not parse doc-base for doc-base Document id; skipping dh_installchangelogs -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' dh_installman # due to a file name conflict spin.1 is moved out of the way #826684 mkdir -p debian/staden/usr/lib/debian-med/share/man/man1/ mv debian/staden/usr/share/man/man1/spin.1 debian/staden/usr/lib/debian-med/share/man/man1/ gzip -9 debian/staden/usr/lib/debian-med/share/man/man1/spin.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms # scripts should be executable chmod a+x debian/*/usr/share/staden/tcl/gap5/contig_graph.tcl chmod a+x debian/*/usr/share/staden/tcl/gap5/gap5_cmd.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/add_stops.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/finish_sanger.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_ext.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_galeon.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_int.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_netscape.tcl make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'staden' in '../staden_2.0.0+b11-5_i386.deb'. dpkg-deb: building package 'staden-dbgsym' in '../staden-dbgsym_2.0.0+b11-5_i386.deb'. dpkg-genbuildinfo --build=any -O../staden_2.0.0+b11-5_i386.buildinfo dpkg-genchanges --build=any -O../staden_2.0.0+b11-5_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-04-26T12:36:38Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden_2.0.0+b11-5_i386.changes: -------------------------------- Format: 1.8 Date: Wed, 13 Mar 2024 15:32:32 +0100 Source: staden Binary: staden staden-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 2.0.0+b11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools Closes: 1066508 Changes: staden (2.0.0+b11-5) unstable; urgency=medium . * Team upload. * Mark staden-commen as Multi-Arch: foreign * Standards-Version: 4.5.0 * Correctly detect 64bit host architectures * d/patches/use_mkstemp_instead_of_tmpnam.patch: add missing stdlib include. Closes: #1066508 * d/control: libncurses-dev replaced libncurses5-dev. * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Update lintian override info format in d/staden-common.lintian-overrides on line 2. * watch file standard 4 (routine-update) * d/upstream/metadata: add links to Sourceforge issue tracker, VCS Checksums-Sha1: 95a125d16e5805dd969cf54a511be1ac42fa1875 3695860 staden-dbgsym_2.0.0+b11-5_i386.deb 99561389bb3e5ceebd0f4789ede9b1e98da414ce 8351 staden_2.0.0+b11-5_i386.buildinfo 1d8d6740ee26a74a32fd29ecec6ae4776360251f 1747388 staden_2.0.0+b11-5_i386.deb Checksums-Sha256: 0040069de4c32261dabe6994680defa6cff56c02ae16830a7cb3561eda4b1cdf 3695860 staden-dbgsym_2.0.0+b11-5_i386.deb 0ee70f28b906e88953652344b50c88e765211143012447ea98641b4eaad407af 8351 staden_2.0.0+b11-5_i386.buildinfo d0c8cc747b68b8d76b93961c2cfe58e980a1722d9b2fb0189d078a089360f770 1747388 staden_2.0.0+b11-5_i386.deb Files: 3526edd930fdc0ebf21bc667626a2471 3695860 debug optional staden-dbgsym_2.0.0+b11-5_i386.deb f15375a2f67ee0c6b4a34fccc896f3a7 8351 science optional staden_2.0.0+b11-5_i386.buildinfo bd2e870cfe8689e685c06e41db92f612 1747388 science optional staden_2.0.0+b11-5_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: staden Binary: staden staden-dbgsym Architecture: i386 Version: 2.0.0+b11-5 Checksums-Md5: 3526edd930fdc0ebf21bc667626a2471 3695860 staden-dbgsym_2.0.0+b11-5_i386.deb bd2e870cfe8689e685c06e41db92f612 1747388 staden_2.0.0+b11-5_i386.deb Checksums-Sha1: 95a125d16e5805dd969cf54a511be1ac42fa1875 3695860 staden-dbgsym_2.0.0+b11-5_i386.deb 1d8d6740ee26a74a32fd29ecec6ae4776360251f 1747388 staden_2.0.0+b11-5_i386.deb Checksums-Sha256: 0040069de4c32261dabe6994680defa6cff56c02ae16830a7cb3561eda4b1cdf 3695860 staden-dbgsym_2.0.0+b11-5_i386.deb d0c8cc747b68b8d76b93961c2cfe58e980a1722d9b2fb0189d078a089360f770 1747388 staden_2.0.0+b11-5_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sat, 26 Apr 2025 12:36:36 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-2), binutils (= 2.44-3), binutils-aarch64-linux-gnu (= 2.44-3), binutils-common (= 2.44-3), bsdextrautils (= 2.41-4), bsdutils (= 1:2.41-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1+b1), coreutils (= 9.7-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-aarch64-linux-gnu (= 14.2.0-19), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.22), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.3), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-aarch64-linux-gnu (= 14.2.0-19), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-aarch64-linux-gnu (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4+b1), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), itcl3 (= 3.4.4-3), itcl3-dev (= 3.4.4-3), itk3 (= 3.4.2-5), itk3-dev (= 3.4.2-5), iwidgets4 (= 4.1.1-4), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-4), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-7), libc-dev-bin (= 2.41-7), libc6 (= 2.41-7), libc6-dev (= 2.41-7), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-6), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.13.0-5), libcurl4-gnutls-dev (= 8.13.0-5), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.1-1), libexpat1-dev (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig-dev (= 2.15.0-2.3), libfontconfig1 (= 2.15.0-2.3), libfontconfig1-dev (= 2.15.0-2.3), libfreetype-dev (= 2.13.3+dfsg-1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.1-1), libhtscodecs-dev (= 1.6.1-2), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 14.2.0-19), libidn2-0 (= 2.3.8-2), libidn2-dev (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblastlog2-2 (= 2.41-4), libldap-dev (= 2.6.9+dfsg-2), libldap2 (= 2.6.9+dfsg-2), liblsan0 (= 14.2.0-19), liblzma-dev (= 5.8.1-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-4), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncurses-dev (= 6.5+20250216-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1.1), libnghttp2-dev (= 1.64.0-1.1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-3), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.47-1.1), libpng16-16t64 (= 1.6.47-1.1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-4), libsqlite3-0 (= 3.46.1-3), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.0-1), libssl3t64 (= 3.5.0-1), libstaden-read-dev (= 1.15.0-1.1+b2), libstaden-read14t64 (= 1.15.0-1.1+b2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.5-2), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtcl8.6 (= 8.6.16+dfsg-1), libtinfo6 (= 6.5+20250216-2), libtk8.6 (= 8.6.16-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.5-2), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-4), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxft-dev (= 2.3.6-1+b4), libxft2 (= 2.3.6-1+b4), libxml2 (= 2.12.7+dfsg+really2.9.14-0.4), libxrender-dev (= 1:0.9.12-1), libxrender1 (= 1:0.9.12-1), libxss-dev (= 1:1.2.3-1+b3), libxss1 (= 1:1.2.3-1+b3), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.25-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.5.0-1), patch (= 2.8-1), perl (= 5.40.1-3), perl-base (= 5.40.1-3), perl-modules-5.40 (= 5.40.1-3), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tcl (= 8.6.16), tcl-dev (= 8.6.16), tcl8.6 (= 8.6.16+dfsg-1), tcl8.6-dev (= 8.6.16+dfsg-1), tk (= 8.6.16), tk-dev (= 8.6.16), tk8.6 (= 8.6.16-1), tk8.6-dev (= 8.6.16-1), tklib (= 0.9-1), tzdata (= 2025b-2), util-linux (= 2.41-4), uuid-dev (= 2.41-4), x11-common (= 1:7.7+24), x11proto-core-dev (= 2024.1-1), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1710340352" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ staden-dbgsym_2.0.0+b11-5_i386.deb ---------------------------------- new Debian package, version 2.0. size 3695860 bytes: control archive=2128 bytes. 1727 bytes, 12 lines control 3685 bytes, 35 lines md5sums Package: staden-dbgsym Source: staden Version: 2.0.0+b11-5 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 4355 Depends: staden (= 2.0.0+b11-5) Section: debug Priority: optional Description: debug symbols for staden Build-Ids: 07cbe6c0fd4e67e69eb678ef8ad5e49c3f156949 1c7e673633471f9585525f4fef71c5a1403d7f7a 3548fc789740f4e434f795e612b675c187640e60 3d09c05da592bd671f3978ec3f278006c36e6337 4371b605143dce0fe48a6f065b436b2497868ab3 45eedca16ecb691412cc41f581dcf5c8be8ca700 51ca32340d7124bdc7a12baf695ac6728adae0bc 547e127a449ab576482dd303721cfe6bbca5529e 5c46d1c9587b1dbc6733810adcfa5515f367e982 5dc6ef583c6dfdec03cccb56d87916fff913a75b 5fb4ba8931eae7f39b597837a8b52322695f6e3c 65b5dcd40e66674ebdd2a7c839847c160326e04f 6b108a05ba613391abd17750b964926e532af230 6ec82cc3062ba446971bc15a9643931d50a9c76f 71d8a20e2d13a7c2b044aa1c5b86a1ce42315713 86b7574e0126166bac726ebd90e3e3a9d5d1a8d3 8c987b15f5e424fa933de4fa5c2c6ded3341ffb6 98cec13fdfda567aef869cef02c21eadd8a3351a 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./usr/lib/debug/.build-id/f0/37df7c7fa85d6d13f0ba1984fb2ad3ab410ab2.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/f6/ -rw-r--r-- root/root 50408 2024-03-13 14:32 ./usr/lib/debug/.build-id/f6/fffd3393b5eabc380d1a120071662dff073e92.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/fd/ -rw-r--r-- root/root 26520 2024-03-13 14:32 ./usr/lib/debug/.build-id/fd/8b2c692ed4102d6f8bf52ac3d9fc85cecb6565.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/fe/ -rw-r--r-- root/root 893872 2024-03-13 14:32 ./usr/lib/debug/.build-id/fe/bf83a5e7b92ac6fe74feaad52f00e6786a05a2.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 79072 2024-03-13 14:32 ./usr/lib/debug/.dwz/i386-linux-gnu/staden.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/share/doc/staden-dbgsym -> staden staden_2.0.0+b11-5_i386.deb --------------------------- new Debian package, version 2.0. size 1747388 bytes: control archive=3132 bytes. 2507 bytes, 47 lines control 3948 bytes, 62 lines md5sums Package: staden Version: 2.0.0+b11-5 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 5179 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libpng16-16t64 (>= 1.6.46), libstaden-read14t64 (>= 1.14.12), libstdc++6 (>= 5), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, zlib1g (>= 1:1.1.4), staden-common (= 2.0.0+b11-5), staden-io-lib-utils, tklib Recommends: med-config Section: science Priority: optional Homepage: https://sourceforge.net/projects/staden/ Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. drwxr-xr-x root/root 0 2024-03-13 14:32 ./ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/bin/ -rwxr-xr-x root/root 321 2020-02-19 15:32 ./usr/bin/gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/gap5 -> gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/pregap4 -> gap4 -rwxr-xr-x root/root 642 2020-02-19 15:32 ./usr/bin/staden lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/trev -> gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/spin -> ../../../bin/gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 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./usr/lib/staden/bin/getABISampleName -rwxr-xr-x root/root 13852 2024-03-13 14:32 ./usr/lib/staden/bin/getABIcomment -rwxr-xr-x root/root 13852 2024-03-13 14:32 ./usr/lib/staden/bin/getABIdate -rwxr-xr-x root/root 22044 2024-03-13 14:32 ./usr/lib/staden/bin/getABIfield -rwxr-xr-x root/root 13852 2024-03-13 14:32 ./usr/lib/staden/bin/get_scf_field -rwxr-xr-x root/root 17948 2024-03-13 14:32 ./usr/lib/staden/bin/hetins -rwxr-xr-x root/root 13852 2024-03-13 14:32 ./usr/lib/staden/bin/init_exp -rwxr-xr-x root/root 17948 2024-03-13 14:32 ./usr/lib/staden/bin/make_weights -rwxr-xr-x root/root 22108 2024-03-13 14:32 ./usr/lib/staden/bin/mutscan -rwxr-xr-x root/root 17948 2024-03-13 14:32 ./usr/lib/staden/bin/polyA_clip -rwxr-xr-x root/root 1879 2024-03-13 14:32 ./usr/lib/staden/bin/prefinish -rwxr-xr-x root/root 1861 2024-03-13 14:32 ./usr/lib/staden/bin/pregap4 -rwxr-xr-x root/root 17960 2024-03-13 14:32 ./usr/lib/staden/bin/qclip -rwxr-xr-x root/root 26140 2024-03-13 14:32 ./usr/lib/staden/bin/screen_seq -rwxr-xr-x root/root 1855 2024-03-13 14:32 ./usr/lib/staden/bin/spin -rwxr-xr-x root/root 71304 2024-03-13 14:32 ./usr/lib/staden/bin/staden_convert -rwxr-xr-x root/root 394 2024-03-13 14:32 ./usr/lib/staden/bin/stash -rwxr-xr-x root/root 17948 2024-03-13 14:32 ./usr/lib/staden/bin/stops -rwxr-xr-x root/root 1815 2024-03-13 14:32 ./usr/lib/staden/bin/tg_index -rwxr-xr-x root/root 416792 2024-03-13 14:32 ./usr/lib/staden/bin/tg_index.bin -rwxr-xr-x root/root 18012 2024-03-13 14:32 ./usr/lib/staden/bin/tracediff -rwxr-xr-x root/root 1869 2024-03-13 14:32 ./usr/lib/staden/bin/trev -rwxr-xr-x root/root 54812 2024-03-13 14:32 ./usr/lib/staden/bin/vector_clip -rw-r--r-- root/root 30444 2024-03-13 14:32 ./usr/lib/staden/libcopy_reads.so -rw-r--r-- root/root 58940 2024-03-13 14:32 ./usr/lib/staden/libg.so -rw-r--r-- root/root 1191928 2024-03-13 14:32 ./usr/lib/staden/libgap.so -rw-r--r-- root/root 1264140 2024-03-13 14:32 ./usr/lib/staden/libgap5.so -rw-r--r-- root/root 42848 2024-03-13 14:32 ./usr/lib/staden/libhaplo.so -rw-r--r-- root/root 55704 2024-03-13 14:32 ./usr/lib/staden/libmisc.so -rw-r--r-- root/root 222708 2024-03-13 14:32 ./usr/lib/staden/libmutlib.so -rw-r--r-- root/root 97652 2024-03-13 14:32 ./usr/lib/staden/libprefinish.so -rw-r--r-- root/root 128380 2024-03-13 14:32 ./usr/lib/staden/libprimer3.so -rw-r--r-- root/root 181924 2024-03-13 14:32 ./usr/lib/staden/libseq_utils.so -rw-r--r-- root/root 498608 2024-03-13 14:32 ./usr/lib/staden/libspin.so -rw-r--r-- root/root 13692 2024-03-13 14:32 ./usr/lib/staden/libtext_utils.so -rw-r--r-- root/root 275288 2024-03-13 14:32 ./usr/lib/staden/libtk_utils.so drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/applications/ -rw-r--r-- root/root 247 2020-02-19 15:32 ./usr/share/applications/gap4.desktop -rw-r--r-- root/root 242 2020-02-19 15:32 ./usr/share/applications/gap5.desktop -rw-r--r-- root/root 269 2020-02-19 15:32 ./usr/share/applications/pregap4.desktop -rw-r--r-- root/root 241 2020-02-19 15:32 ./usr/share/applications/trev.desktop drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 833 2020-02-19 15:32 ./usr/share/bash-completion/completions/staden drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/staden/ -rw-r--r-- root/root 2159 2020-02-19 15:32 ./usr/share/doc/staden/README.Debian -rw-r--r-- root/root 900 2024-03-13 14:32 ./usr/share/doc/staden/changelog.Debian.gz -rw-r--r-- root/root 197205 2016-04-25 10:40 ./usr/share/doc/staden/changelog.gz -rw-r--r-- root/root 9591 2024-03-13 14:32 ./usr/share/doc/staden/copyright drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/man1/ -rw-r--r-- root/root 1007 2024-03-13 14:32 ./usr/share/man/man1/gap4.1.gz -rw-r--r-- root/root 961 2024-03-13 14:32 ./usr/share/man/man1/gap5.1.gz -rw-r--r-- root/root 682 2024-03-13 14:32 ./usr/share/man/man1/pregap4.1.gz -rw-r--r-- root/root 826 2024-03-13 14:32 ./usr/share/man/man1/trev.1.gz drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/staden/ -rw-r--r-- root/root 4107 2020-02-19 15:32 ./usr/share/staden/icon4bl.svg lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1455 B] Get:5 copy:/<>/apt_archive ./ Packages [1532 B] Fetched 3602 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:i386 shared-mime-info t1utils ucf unzip 0 upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After this operation, 91.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-8 [63.0 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-8 [873 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.5.0-1 [1454 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get:10 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0051 [42.8 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.1-2 [1423 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b2 [756 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.13.0-5 [342 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 2.2.0-4+b2 [111 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.22-1 [59.3 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.0.5-1 [210 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.0.5-1 [536 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.67-1 [32.6 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-4 [78.5 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2 [59.1 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.7-15 [121 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3 [22.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.7-15 [577 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.18.0-1 [3125 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.42 [64.3 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-1 [115 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.68-1 [217 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:70 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:80 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.39-1 [128 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-2 [31.0 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b5 [97.7 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1+b1 [24.1 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:100 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:101 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:117 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.78-1 [183 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15-3 [37.8 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:140 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b3 [41.7 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:152 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:153 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.48-2 [64.3 kB] Get:154 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.30-1+b1 [27.1 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:156 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:157 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1 [13.2 kB] Get:158 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:159 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:160 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:161 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-3 [19.9 kB] Get:162 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:163 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:164 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:165 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:166 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b2 [300 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.903.0+ds-1 [33.7 kB] Get:168 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.12-3 [60.0 kB] Get:169 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:170 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get:171 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:172 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get:173 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.122.0 [1063 kB] Preconfiguring packages ... Fetched 21.6 MB in 0s (61.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 23270 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-8_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-8_arm64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.5.0-1_arm64.deb ... Unpacking openssl (3.5.0-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0051_all.deb ... Moving old data out of the way Unpacking ucf (3.0051) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../010-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../011-libglib2.0-0t64_2.84.1-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.84.1-2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_2.4-5+b2_arm64.deb ... Unpacking shared-mime-info (2.4-5+b2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../013-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../014-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../015-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../016-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../017-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../018-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../019-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../020-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../021-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../022-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../023-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../024-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../025-libldap2_2.6.9+dfsg-2_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../026-libnghttp2-14_1.64.0-1.1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../027-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. 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Unpacking libcurl3t64-gnutls:arm64 (8.13.0-5) ... Selecting previously unselected package libstemmer0d:arm64. Preparing to unpack .../034-libstemmer0d_2.2.0-4+b2_arm64.deb ... Unpacking libstemmer0d:arm64 (2.2.0-4+b2) ... Selecting previously unselected package libxmlb2:arm64. Preparing to unpack .../035-libxmlb2_0.3.22-1_arm64.deb ... Unpacking libxmlb2:arm64 (0.3.22-1) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../036-libyaml-0-2_0.2.5-2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-2) ... Selecting previously unselected package libappstream5:arm64. Preparing to unpack .../037-libappstream5_1.0.5-1_arm64.deb ... Unpacking libappstream5:arm64 (1.0.5-1) ... Selecting previously unselected package appstream. Preparing to unpack .../038-appstream_1.0.5-1_arm64.deb ... Unpacking appstream (1.0.5-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../039-diffstat_1.67-1_arm64.deb ... Unpacking diffstat (1.67-1) ... Selecting previously unselected package libgpg-error0:arm64. Preparing to unpack .../040-libgpg-error0_1.51-4_arm64.deb ... Unpacking libgpg-error0:arm64 (1.51-4) ... Selecting previously unselected package libassuan9:arm64. Preparing to unpack .../041-libassuan9_3.0.2-2_arm64.deb ... Unpacking libassuan9:arm64 (3.0.2-2) ... Selecting previously unselected package libgcrypt20:arm64. Preparing to unpack .../042-libgcrypt20_1.11.0-7_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-7) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../043-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package gpgconf. Preparing to unpack .../044-gpgconf_2.4.7-15_arm64.deb ... Unpacking gpgconf (2.4.7-15) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../045-libksba8_1.6.7-2+b1_arm64.deb ... Unpacking libksba8:arm64 (1.6.7-2+b1) ... Selecting previously unselected package libnpth0t64:arm64. 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Preparing to unpack .../144-libperlio-gzip-perl_0.20-1+b4_arm64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b4) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../145-libperlio-utf8-strict-perl_0.010-1+b3_arm64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1+b3) ... Selecting previously unselected package libproc-processtable-perl:arm64. Preparing to unpack .../146-libproc-processtable-perl_0.636-1+b3_arm64.deb ... Unpacking libproc-processtable-perl:arm64 (0.636-1+b3) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../147-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../148-libsereal-decoder-perl_5.004+ds-1+b3_arm64.deb ... Unpacking libsereal-decoder-perl (5.004+ds-1+b3) ... Selecting previously unselected package libsereal-encoder-perl. 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Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../165-libyaml-libyaml-perl_0.903.0+ds-1_arm64.deb ... Unpacking libyaml-libyaml-perl (0.903.0+ds-1) ... Selecting previously unselected package plzip. Preparing to unpack .../166-plzip_1.12-3_arm64.deb ... Unpacking plzip (1.12-3) ... Selecting previously unselected package lzop. Preparing to unpack .../167-lzop_1.04-2+b1_arm64.deb ... Unpacking lzop (1.04-2+b1) ... Selecting previously unselected package patchutils. Preparing to unpack .../168-patchutils_0.4.2-1+b1_arm64.deb ... Unpacking patchutils (0.4.2-1+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../169-t1utils_1.41-4+b1_arm64.deb ... Unpacking t1utils (1.41-4+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../170-unzip_6.0-29_arm64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package lintian. Preparing to unpack .../171-lintian_2.122.0_all.deb ... Unpacking lintian (2.122.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:i386. Preparing to unpack .../172-sbuild-build-depends-lintian-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.42) ... Setting up liblz1:arm64 (1.15-3) ... Setting up libberkeleydb-perl:arm64 (0.66-1) ... Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libnpth0t64:arm64 (1.8-3) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libgpg-error0:arm64 (1.51-4) ... Setting up libdata-messagepack-perl (1.02-2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up patchutils (0.4.2-1+b1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4+b1) ... Setting up diffstat (1.67-1) ... Setting up libproc2-0:arm64 (2:4.0.4-8) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up libncursesw6:arm64 (6.5+20250216-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.28-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2+b1) ... Setting up libassuan9:arm64 (3.0.2-2) ... Setting up procps (2:4.0.4-8) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libstemmer0d:arm64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.0-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-6) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2.1) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.84.1-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0051) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.4.7-15) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.4.7-15) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:arm64 (0.3.22-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.68-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:arm64 (8.13.0-5) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:arm64 (1.0.5-1) ... Setting up appstream (1.0.5-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.122.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 641 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 59 Job: staden_2.0.0+b11-5 Lintian: pass Machine Architecture: arm64 Package: staden Package-Time: 750 Source-Version: 2.0.0+b11-5 Space: n/a Status: successful Version: 2.0.0+b11-5 -------------------------------------------------------------------------------- Finished at 2025-04-26T12:36:38Z Build needed 00:12:30, no disk space