sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | staden 2.0.0+b11-5 (riscv64) Mon, 24 Mar 2025 09:35:57 +0000 | +==============================================================================+ Package: staden Version: 2.0.0+b11-5 Source Version: 2.0.0+b11-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-7eb72fd0-8cd8-4738-b6c9-cf171231a84e' with '<<CHROOT>>' I: NOTICE: Log filtering will replace 'build/staden-FMmo3I/resolver-kMEBUN' with '<<RESOLVERDIR>>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/non-free-firmware Sources.diff/Index [63.3 kB] Get:4 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-03-24-0208.15-F-2025-03-24-0208.15.pdiff [439 B] Get:7 http://localhost:3142/debian unstable/non-free-firmware Sources T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [542 B] Get:8 http://localhost:3142/debian unstable/main Sources T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [22.9 kB] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-03-24-0208.15-F-2025-03-24-0208.15.pdiff [439 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [30.1 kB] Get:8 http://localhost:3142/debian unstable/main Sources T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [22.9 kB] Get:7 http://localhost:3142/debian unstable/non-free-firmware Sources T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [542 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-24-0811.12-F-2025-03-24-0208.15.pdiff [30.1 kB] Get:10 http://localhost:3142/debian unstable/main riscv64 Packages [9733 kB] Fetched 10.2 MB in 3s (3850 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: tzdata 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 259 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 tzdata all 2025b-1 [259 kB] Preconfiguring packages ... Fetched 259 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12837 files and directories currently installed.) Preparing to unpack .../tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) over (2025a-2) ... Setting up tzdata (2025b-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 24 09:36:07 UTC 2025. Universal Time is now: Mon Mar 24 09:36:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 1s (9463 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/staden-FMmo3I/staden-2.0.0+b11' with '<<PKGBUILDDIR>>' I: NOTICE: Log filtering will replace 'build/staden-FMmo3I' with '<<BUILDDIR>>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B] Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [882 B] Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [927 B] Fetched 2418 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils comerr-dev:riscv64 cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:riscv64 itcl3-dev:riscv64 itk3 itk3:riscv64 itk3-dev:riscv64 iwidgets4 krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libbrotli-dev:riscv64 libbrotli1 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcom-err2:riscv64 libcrypt-dev:riscv64 libcrypt1:riscv64 libcurl3t64-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libelf1t64 libevent-2.1-7t64:riscv64 libexpat1 libexpat1:riscv64 libexpat1-dev:riscv64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libfontconfig-dev:riscv64 libfontconfig1 libfontconfig1:riscv64 libfontconfig1-dev:riscv64 libfreetype-dev:riscv64 libfreetype6 libfreetype6:riscv64 libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls-openssl27t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libhogweed6t64:riscv64 libhtscodecs-dev:riscv64 libhtscodecs2:riscv64 libicu76 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libncurses-dev:riscv64 libncurses6:riscv64 libncursesw6:riscv64 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpipeline1 libpkgconf3 libpng-dev:riscv64 libpng16-16t64 libpng16-16t64:riscv64 libpsl-dev:riscv64 libpsl5t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstaden-read-dev:riscv64 libstaden-read14t64:riscv64 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtcl8.6 libtcl8.6:riscv64 libtinfo6:riscv64 libtk8.6 libtk8.6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring5 libunistring5:riscv64 libuuid1:riscv64 libx11-6 libx11-6:riscv64 libx11-data libx11-dev:riscv64 libxau-dev:riscv64 libxau6 libxau6:riscv64 libxcb1 libxcb1:riscv64 libxcb1-dev:riscv64 libxdmcp-dev:riscv64 libxdmcp6 libxdmcp6:riscv64 libxext-dev:riscv64 libxext6 libxext6:riscv64 libxft-dev:riscv64 libxft2 libxft2:riscv64 libxml2 libxrender-dev:riscv64 libxrender1 libxrender1:riscv64 libxss-dev:riscv64 libxss1 libxss1:riscv64 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 pkgconf:riscv64 pkgconf-bin po-debconf sensible-utils tcl tcl-dev:riscv64 tcl8.6 tcl8.6-dev:riscv64 tk tk-dev:riscv64 tk8.6 tk8.6-dev:riscv64 tklib uuid-dev:riscv64 x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:riscv64 zlib1g-dev:riscv64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:riscv64 gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff itcl3-doc itcl3-doc:riscv64 itk3-doc itk3-doc:riscv64 iwidgets4-doc krb5-doc:riscv64 glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 libnss-nisplus:riscv64 manpages-dev:riscv64 libcurl4-doc:riscv64 libidn-dev:riscv64 freetype2-doc:riscv64 gmp-doc:riscv64 libgmp10-doc:riscv64 libmpfr-dev:riscv64 dns-root-data:riscv64 gnutls-bin:riscv64 gnutls-doc:riscv64 krb5-user:riscv64 liblzma-doc:riscv64 ncurses-doc:riscv64 libnghttp2-doc:riscv64 p11-kit-doc:riscv64 libssl-doc:riscv64 libstdc++-14-doc:riscv64 libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:riscv64 libx11-doc:riscv64 libxcb-doc:riscv64 libxext-doc:riscv64 m4-doc apparmor less www-browser libmail-box-perl tcl-doc:riscv64 tcl-tclreadline tcl8.6-doc:riscv64 tk-doc:riscv64 tk8.6-doc:riscv64 Recommended packages: curl | wget | lynx bzip2-doc:riscv64 ca-certificates:riscv64 libarchive-cpio-perl krb5-locales:riscv64 libldap-common:riscv64 libgpm2:riscv64 libpng-tools:riscv64 publicsuffix:riscv64 libsasl2-modules:riscv64 libtasn1-doc:riscv64 libltdl-dev libmail-sendmail-perl tcllib The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils comerr-dev:riscv64 cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:riscv64 itcl3-dev:riscv64 itk3 itk3:riscv64 itk3-dev:riscv64 iwidgets4 krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libbrotli-dev:riscv64 libbrotli1 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcom-err2:riscv64 libcrypt-dev:riscv64 libcrypt1:riscv64 libcurl3t64-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libelf1t64 libevent-2.1-7t64:riscv64 libexpat1 libexpat1:riscv64 libexpat1-dev:riscv64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libfontconfig-dev:riscv64 libfontconfig1 libfontconfig1:riscv64 libfontconfig1-dev:riscv64 libfreetype-dev:riscv64 libfreetype6 libfreetype6:riscv64 libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls-openssl27t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libhogweed6t64:riscv64 libhtscodecs-dev:riscv64 libhtscodecs2:riscv64 libicu76 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libncurses-dev:riscv64 libncurses6:riscv64 libncursesw6:riscv64 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpipeline1 libpkgconf3 libpng-dev:riscv64 libpng16-16t64 libpng16-16t64:riscv64 libpsl-dev:riscv64 libpsl5t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstaden-read-dev:riscv64 libstaden-read14t64:riscv64 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtcl8.6 libtcl8.6:riscv64 libtinfo6:riscv64 libtk8.6 libtk8.6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring5 libunistring5:riscv64 libuuid1:riscv64 libx11-6 libx11-6:riscv64 libx11-data libx11-dev:riscv64 libxau-dev:riscv64 libxau6 libxau6:riscv64 libxcb1 libxcb1:riscv64 libxcb1-dev:riscv64 libxdmcp-dev:riscv64 libxdmcp6 libxdmcp6:riscv64 libxext-dev:riscv64 libxext6 libxext6:riscv64 libxft-dev:riscv64 libxft2 libxft2:riscv64 libxml2 libxrender-dev:riscv64 libxrender1 libxrender1:riscv64 libxss-dev:riscv64 libxss1 libxss1:riscv64 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 pkgconf:riscv64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:riscv64 sensible-utils tcl tcl-dev:riscv64 tcl8.6 tcl8.6-dev:riscv64 tk tk-dev:riscv64 tk8.6 tk8.6-dev:riscv64 tklib uuid-dev:riscv64 x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:riscv64 zlib1g-dev:riscv64 0 upgraded, 219 newly installed, 0 to remove and 0 not upgraded. Need to get 183 MB of archives. After this operation, 955 MB of additional disk space will be used. Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [992 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.44-3 [1428 kB] Get:18 http://localhost:3142/debian unstable/main riscv64 gcc-14-base riscv64 14.2.0-19 [49.4 kB] Get:19 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 14.2.0-19 [56.8 kB] Get:20 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.41-6 [2465 kB] Get:21 http://localhost:3142/debian unstable/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Get:22 http://localhost:3142/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Get:23 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.41-6 [3127 kB] Get:24 http://localhost:3142/debian unstable/main riscv64 libcom-err2 riscv64 1.47.2-1+b1 [24.0 kB] Get:25 http://localhost:3142/debian unstable/main riscv64 comerr-dev riscv64 2.1-1.47.2-1+b1 [59.4 kB] Get:26 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu-base amd64 14.2.0-19cross1 [49.6 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [13.3 MB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:29 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.41-6cross2 [1169 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 14.2.0-19cross1 [56.8 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 14.2.0-19cross1 [128 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 14.2.0-19cross1 [25.2 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 14.2.0-19cross1 [8316 B] Get:35 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 14.2.0-19cross1 [2354 kB] Get:36 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 14.2.0-19cross1 [1076 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 14.2.0-19cross1 [2230 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 14.2.0-19cross1 [660 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 14.2.0-19cross1 [978 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-riscv64-cross all 14.2.0-19cross1 [5178 kB] Get:41 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [25.7 MB] Get:42 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:14.2.0-1 [1444 B] Get:43 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 6.12.17-1cross2 [2339 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.41-6cross2 [3123 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-riscv64-cross all 14.2.0-19cross1 [4940 kB] Get:46 http://localhost:3142/debian unstable/main amd64 g++-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [14.3 MB] Get:47 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:48 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:49 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:54 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:55 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:56 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:60 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:61 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:62 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:63 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1-1 [29.5 kB] Get:65 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1-1 [75.7 kB] Get:66 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:67 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:68 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.2 [318 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:70 http://localhost:3142/debian unstable/main amd64 itcl3 amd64 3.4.4-3 [48.2 kB] Get:71 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Get:72 http://localhost:3142/debian unstable/main riscv64 libtcl8.6 riscv64 8.6.16+dfsg-1 [1065 kB] Get:73 http://localhost:3142/debian unstable/main riscv64 itcl3 riscv64 3.4.4-3 [49.9 kB] Get:74 http://localhost:3142/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Get:75 http://localhost:3142/debian unstable/main amd64 tcl8.6 amd64 8.6.16+dfsg-1 [121 kB] Get:76 http://localhost:3142/debian unstable/main riscv64 tcl8.6-dev riscv64 8.6.16+dfsg-1 [2264 kB] Get:77 http://localhost:3142/debian unstable/main amd64 tcl amd64 8.6.16 [4096 B] Get:78 http://localhost:3142/debian unstable/main riscv64 tcl-dev riscv64 8.6.16 [6624 B] Get:79 http://localhost:3142/debian unstable/main riscv64 itcl3-dev riscv64 3.4.4-3 [15.7 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.2 [391 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:93 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:96 http://localhost:3142/debian unstable/main amd64 itk3 amd64 3.4.2-5 [26.4 kB] Get:97 http://localhost:3142/debian unstable/main riscv64 libexpat1 riscv64 2.7.0-1 [101 kB] Get:98 http://localhost:3142/debian unstable/main riscv64 libbrotli1 riscv64 1.1.0-2+b7 [358 kB] Get:99 http://localhost:3142/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Get:100 http://localhost:3142/debian unstable/main riscv64 libpng16-16t64 riscv64 1.6.47-1.1 [285 kB] Get:101 http://localhost:3142/debian unstable/main riscv64 libfreetype6 riscv64 2.13.3+dfsg-1 [467 kB] Get:102 http://localhost:3142/debian unstable/main riscv64 libfontconfig1 riscv64 2.15.0-2.2 [398 kB] Get:103 http://localhost:3142/debian unstable/main riscv64 libxau6 riscv64 1:1.0.11-1 [20.5 kB] Get:104 http://localhost:3142/debian unstable/main riscv64 libxdmcp6 riscv64 1:1.1.5-1 [28.0 kB] Get:105 http://localhost:3142/debian unstable/main riscv64 libxcb1 riscv64 1.17.0-2+b1 [145 kB] Get:106 http://localhost:3142/debian unstable/main riscv64 libx11-6 riscv64 2:1.8.12-1 [817 kB] Get:107 http://localhost:3142/debian unstable/main riscv64 libxrender1 riscv64 1:0.9.10-1.1+b4 [28.5 kB] Get:108 http://localhost:3142/debian unstable/main riscv64 libxft2 riscv64 2.3.6-1+b4 [53.1 kB] Get:109 http://localhost:3142/debian unstable/main riscv64 libxext6 riscv64 2:1.3.4-1+b3 [51.7 kB] Get:110 http://localhost:3142/debian unstable/main riscv64 libxss1 riscv64 1:1.2.3-1+b3 [16.9 kB] Get:111 http://localhost:3142/debian unstable/main riscv64 libtk8.6 riscv64 8.6.16-1 [799 kB] Get:112 http://localhost:3142/debian unstable/main riscv64 itk3 riscv64 3.4.2-5 [27.7 kB] Get:113 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:114 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:115 http://localhost:3142/debian unstable/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get:116 http://localhost:3142/debian unstable/main riscv64 libxau-dev riscv64 1:1.0.11-1 [27.6 kB] Get:117 http://localhost:3142/debian unstable/main riscv64 libxdmcp-dev riscv64 1:1.1.5-1 [52.9 kB] Get:118 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:119 http://localhost:3142/debian unstable/main riscv64 libxcb1-dev riscv64 1.17.0-2+b1 [241 kB] Get:120 http://localhost:3142/debian unstable/main riscv64 libx11-dev riscv64 2:1.8.12-1 [1408 kB] Get:121 http://localhost:3142/debian unstable/main riscv64 libxext-dev riscv64 2:1.3.4-1+b3 [147 kB] Get:122 http://localhost:3142/debian unstable/main riscv64 libxss-dev riscv64 1:1.2.3-1+b3 [26.2 kB] Get:123 http://localhost:3142/debian unstable/main riscv64 libexpat1-dev riscv64 2.7.0-1 [291 kB] Get:124 http://localhost:3142/debian unstable/main riscv64 libbrotli-dev riscv64 1.1.0-2+b7 [798 kB] Get:125 http://localhost:3142/debian unstable/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Get:126 http://localhost:3142/debian unstable/main riscv64 libpng-dev riscv64 1.6.47-1.1 [512 kB] Get:127 http://localhost:3142/debian unstable/main riscv64 libfreetype-dev riscv64 2.13.3+dfsg-1 [1145 kB] Get:128 http://localhost:3142/debian unstable/main riscv64 libuuid1 riscv64 2.40.4-5 [38.7 kB] Get:129 http://localhost:3142/debian unstable/main riscv64 uuid-dev riscv64 2.40.4-5 [62.9 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:131 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:132 http://localhost:3142/debian unstable/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Get:133 http://localhost:3142/debian unstable/main riscv64 libfontconfig-dev riscv64 2.15.0-2.2 [604 kB] Get:134 http://localhost:3142/debian unstable/main riscv64 libfontconfig1-dev riscv64 2.15.0-2.2 [269 kB] Get:135 http://localhost:3142/debian unstable/main riscv64 libxrender-dev riscv64 1:0.9.10-1.1+b4 [58.8 kB] Get:136 http://localhost:3142/debian unstable/main riscv64 libxft-dev riscv64 2.3.6-1+b4 [124 kB] Get:137 http://localhost:3142/debian unstable/main amd64 tk8.6 amd64 8.6.16-1 [69.6 kB] Get:138 http://localhost:3142/debian unstable/main riscv64 tk8.6-dev riscv64 8.6.16-1 [1600 kB] Get:139 http://localhost:3142/debian unstable/main amd64 tk amd64 8.6.16 [4136 B] Get:140 http://localhost:3142/debian unstable/main riscv64 tk-dev riscv64 8.6.16 [3964 B] Get:141 http://localhost:3142/debian unstable/main riscv64 itk3-dev riscv64 3.4.2-5 [5716 B] Get:142 http://localhost:3142/debian unstable/main amd64 iwidgets4 all 4.1.1-4 [194 kB] Get:143 http://localhost:3142/debian unstable/main riscv64 libkrb5support0 riscv64 1.21.3-5 [34.0 kB] Get:144 http://localhost:3142/debian unstable/main riscv64 libk5crypto3 riscv64 1.21.3-5 [100 kB] Get:145 http://localhost:3142/debian unstable/main riscv64 libkeyutils1 riscv64 1.6.3-4 [9124 B] Get:146 http://localhost:3142/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-1 [360 kB] Get:147 http://localhost:3142/debian unstable/main riscv64 libssl3t64 riscv64 3.4.1-1 [2098 kB] Get:148 http://localhost:3142/debian unstable/main riscv64 libkrb5-3 riscv64 1.21.3-5 [334 kB] Get:149 http://localhost:3142/debian unstable/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-5 [143 kB] Get:150 http://localhost:3142/debian unstable/main riscv64 libgssrpc4t64 riscv64 1.21.3-5 [60.7 kB] Get:151 http://localhost:3142/debian unstable/main riscv64 libkadm5clnt-mit12 riscv64 1.21.3-5 [42.2 kB] Get:152 http://localhost:3142/debian unstable/main riscv64 libkdb5-10t64 riscv64 1.21.3-5 [43.4 kB] Get:153 http://localhost:3142/debian unstable/main riscv64 libkadm5srv-mit12 riscv64 1.21.3-5 [54.9 kB] Get:154 http://localhost:3142/debian unstable/main riscv64 krb5-multidev riscv64 1.21.3-5 [126 kB] Get:155 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 14.2.0-19 [2365 kB] Get:156 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 14.2.0-19 [8672 B] Get:157 http://localhost:3142/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-3 [558 kB] Get:158 http://localhost:3142/debian unstable/main riscv64 libnettle8t64 riscv64 3.10.1-1 [335 kB] Get:159 http://localhost:3142/debian unstable/main riscv64 libhogweed6t64 riscv64 3.10.1-1 [336 kB] Get:160 http://localhost:3142/debian unstable/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Get:161 http://localhost:3142/debian unstable/main riscv64 libidn2-0 riscv64 2.3.8-2 [109 kB] Get:162 http://localhost:3142/debian unstable/main riscv64 libffi8 riscv64 3.4.7-1 [21.6 kB] Get:163 http://localhost:3142/debian unstable/main riscv64 libp11-kit0 riscv64 0.25.5-3 [444 kB] Get:164 http://localhost:3142/debian unstable/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Get:165 http://localhost:3142/debian unstable/main riscv64 libgnutls30t64 riscv64 3.8.9-2 [1445 kB] Get:166 http://localhost:3142/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Get:167 http://localhost:3142/debian unstable/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-9 [20.5 kB] Get:168 http://localhost:3142/debian unstable/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-9 [60.9 kB] Get:169 http://localhost:3142/debian unstable/main riscv64 libldap2 riscv64 2.6.9+dfsg-2 [196 kB] Get:170 http://localhost:3142/debian unstable/main riscv64 libnghttp2-14 riscv64 1.64.0-1 [77.0 kB] Get:171 http://localhost:3142/debian unstable/main riscv64 libnghttp3-9 riscv64 1.8.0-1 [68.5 kB] Get:172 http://localhost:3142/debian unstable/main riscv64 libngtcp2-16 riscv64 1.11.0-1 [136 kB] Get:173 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.11.0-1 [29.8 kB] Get:174 http://localhost:3142/debian unstable/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Get:175 http://localhost:3142/debian unstable/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2+b5 [59.0 kB] Get:176 http://localhost:3142/debian unstable/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Get:177 http://localhost:3142/debian unstable/main riscv64 libcurl3t64-gnutls riscv64 8.13.0~rc2-2 [378 kB] Get:178 http://localhost:3142/debian unstable/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Get:179 http://localhost:3142/debian unstable/main riscv64 libunbound8 riscv64 1.22.0-1+b1 [605 kB] Get:180 http://localhost:3142/debian unstable/main riscv64 libgnutls-dane0t64 riscv64 3.8.9-2 [453 kB] Get:181 http://localhost:3142/debian unstable/main riscv64 libgnutls-openssl27t64 riscv64 3.8.9-2 [453 kB] Get:182 http://localhost:3142/debian unstable/main riscv64 libidn2-dev riscv64 2.3.8-2 [135 kB] Get:183 http://localhost:3142/debian unstable/main riscv64 libp11-kit-dev riscv64 0.25.5-3 [208 kB] Get:184 http://localhost:3142/debian unstable/main riscv64 libtasn1-6-dev riscv64 4.20.0-2 [149 kB] Get:185 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 14.2.0-19 [707 kB] Get:186 http://localhost:3142/debian unstable/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-3 [329 kB] Get:187 http://localhost:3142/debian unstable/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-3 [1024 kB] Get:188 http://localhost:3142/debian unstable/main riscv64 nettle-dev riscv64 3.10.1-1 [1523 kB] Get:189 http://localhost:3142/debian unstable/main riscv64 libgnutls28-dev riscv64 3.8.9-2 [2614 kB] Get:190 http://localhost:3142/debian unstable/main riscv64 libkrb5-dev riscv64 1.21.3-5 [16.1 kB] Get:191 http://localhost:3142/debian unstable/main riscv64 libldap-dev riscv64 2.6.9+dfsg-2 [581 kB] Get:192 http://localhost:3142/debian unstable/main riscv64 libnghttp2-dev riscv64 1.64.0-1 [219 kB] Get:193 http://localhost:3142/debian unstable/main riscv64 libnghttp3-dev riscv64 1.8.0-1 [175 kB] Get:194 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.11.0-1 [48.5 kB] Get:195 http://localhost:3142/debian unstable/main riscv64 libngtcp2-dev riscv64 1.11.0-1 [371 kB] Get:196 http://localhost:3142/debian unstable/main riscv64 libpsl-dev riscv64 0.21.2-1.1+b1 [87.2 kB] Get:197 http://localhost:3142/debian unstable/main riscv64 librtmp-dev riscv64 2.4+20151223.gitfa8646d.1-2+b5 [118 kB] Get:198 http://localhost:3142/debian unstable/main riscv64 libssl-dev riscv64 3.4.1-1 [5399 kB] Get:199 http://localhost:3142/debian unstable/main riscv64 libssh2-1-dev riscv64 1.11.1-1 [560 kB] Get:200 http://localhost:3142/debian unstable/main riscv64 libzstd-dev riscv64 1.5.7+dfsg-1 [1392 kB] Get:201 http://localhost:3142/debian unstable/main riscv64 libcurl4-gnutls-dev riscv64 8.13.0~rc2-2 [1096 kB] Get:202 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 14.2.0-19 [130 kB] Get:203 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 14.2.0-19 [25.8 kB] Get:204 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 14.2.0-19 [1078 kB] Get:205 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 14.2.0-19 [2241 kB] Get:206 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 14.2.0-19 [979 kB] Get:207 http://localhost:3142/debian unstable/main riscv64 libgcc-14-dev riscv64 14.2.0-19 [5190 kB] Get:208 http://localhost:3142/debian unstable/main riscv64 libhtscodecs2 riscv64 1.6.1-2 [74.7 kB] Get:209 http://localhost:3142/debian unstable/main riscv64 libhtscodecs-dev riscv64 1.6.1-2 [3085 kB] Get:210 http://localhost:3142/debian unstable/main riscv64 liblzma5 riscv64 5.6.4-1 [285 kB] Get:211 http://localhost:3142/debian unstable/main riscv64 liblzma-dev riscv64 5.6.4-1 [451 kB] Get:212 http://localhost:3142/debian unstable/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Get:213 http://localhost:3142/debian unstable/main riscv64 libncurses6 riscv64 6.5+20250216-2 [105 kB] Get:214 http://localhost:3142/debian unstable/main riscv64 libncursesw6 riscv64 6.5+20250216-2 [141 kB] Get:215 http://localhost:3142/debian unstable/main riscv64 libncurses-dev riscv64 6.5+20250216-2 [838 kB] Get:216 http://localhost:3142/debian unstable/main riscv64 libstaden-read14t64 riscv64 1.15.0-1.1+b2 [275 kB] Get:217 http://localhost:3142/debian unstable/main riscv64 libstaden-read-dev riscv64 1.15.0-1.1+b2 [665 kB] Get:218 http://localhost:3142/debian unstable/main riscv64 libstdc++-14-dev riscv64 14.2.0-19 [5276 kB] Get:219 http://localhost:3142/debian unstable/main amd64 tklib all 0.9-1 [1749 kB] Preconfiguring packages ... Fetched 183 MB in 9s (20.4 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12838 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-3_amd64.deb ... Unpacking libmagic-mgc (1:5.46-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-3) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-3_amd64.deb ... Unpacking file (1:5.46-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. 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Unpacking librtmp-dev:riscv64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:riscv64. Preparing to unpack .../196-libssl-dev_3.4.1-1_riscv64.deb ... Unpacking libssl-dev:riscv64 (3.4.1-1) ... Selecting previously unselected package libssh2-1-dev:riscv64. Preparing to unpack .../197-libssh2-1-dev_1.11.1-1_riscv64.deb ... Unpacking libssh2-1-dev:riscv64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:riscv64. Preparing to unpack .../198-libzstd-dev_1.5.7+dfsg-1_riscv64.deb ... Unpacking libzstd-dev:riscv64 (1.5.7+dfsg-1) ... Selecting previously unselected package libcurl4-gnutls-dev:riscv64. Preparing to unpack .../199-libcurl4-gnutls-dev_8.13.0~rc2-2_riscv64.deb ... Unpacking libcurl4-gnutls-dev:riscv64 (8.13.0~rc2-2) ... Selecting previously unselected package libgomp1:riscv64. Preparing to unpack .../200-libgomp1_14.2.0-19_riscv64.deb ... Unpacking libgomp1:riscv64 (14.2.0-19) ... Selecting previously unselected package libitm1:riscv64. Preparing to unpack .../201-libitm1_14.2.0-19_riscv64.deb ... Unpacking libitm1:riscv64 (14.2.0-19) ... Selecting previously unselected package liblsan0:riscv64. Preparing to unpack .../202-liblsan0_14.2.0-19_riscv64.deb ... Unpacking liblsan0:riscv64 (14.2.0-19) ... Selecting previously unselected package libtsan2:riscv64. Preparing to unpack .../203-libtsan2_14.2.0-19_riscv64.deb ... Unpacking libtsan2:riscv64 (14.2.0-19) ... Selecting previously unselected package libubsan1:riscv64. Preparing to unpack .../204-libubsan1_14.2.0-19_riscv64.deb ... Unpacking libubsan1:riscv64 (14.2.0-19) ... Selecting previously unselected package libgcc-14-dev:riscv64. Preparing to unpack .../205-libgcc-14-dev_14.2.0-19_riscv64.deb ... Unpacking libgcc-14-dev:riscv64 (14.2.0-19) ... Selecting previously unselected package libhtscodecs2:riscv64. Preparing to unpack .../206-libhtscodecs2_1.6.1-2_riscv64.deb ... Unpacking libhtscodecs2:riscv64 (1.6.1-2) ... Selecting previously unselected package libhtscodecs-dev:riscv64. Preparing to unpack .../207-libhtscodecs-dev_1.6.1-2_riscv64.deb ... Unpacking libhtscodecs-dev:riscv64 (1.6.1-2) ... Selecting previously unselected package liblzma5:riscv64. Preparing to unpack .../208-liblzma5_5.6.4-1_riscv64.deb ... Unpacking liblzma5:riscv64 (5.6.4-1) ... Selecting previously unselected package liblzma-dev:riscv64. Preparing to unpack .../209-liblzma-dev_5.6.4-1_riscv64.deb ... Unpacking liblzma-dev:riscv64 (5.6.4-1) ... Selecting previously unselected package libtinfo6:riscv64. Preparing to unpack .../210-libtinfo6_6.5+20250216-2_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.5+20250216-2) ... Selecting previously unselected package libncurses6:riscv64. Preparing to unpack .../211-libncurses6_6.5+20250216-2_riscv64.deb ... Unpacking libncurses6:riscv64 (6.5+20250216-2) ... Selecting previously unselected package libncursesw6:riscv64. 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Preparing to unpack .../217-tklib_0.9-1_all.deb ... Unpacking tklib (0.9-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:riscv64. Preparing to unpack .../218-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Setting up libexpat1:amd64 (2.7.0-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.46-3) ... Setting up gcc-14-base:riscv64 (14.2.0-19) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-3) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up gettext-base (0.23.1-1) ... Setting up binutils-riscv64-linux-gnu (2.44-3) ... Setting up m4 (1.4.19-7) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up file (1:5.46-3) ... Setting up libfakeroot:amd64 (1.37.1-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up fakeroot (1.37.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up gcc-14-riscv64-linux-gnu-base:amd64 (14.2.0-19cross1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up linux-libc-dev-riscv64-cross (6.12.17-1cross2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libc6-riscv64-cross (2.41-6cross2) ... Setting up libgomp1-riscv64-cross (14.2.0-19cross1) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libatomic1-riscv64-cross (14.2.0-19cross1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up tcl8.6 (8.6.16+dfsg-1) ... Setting up gettext (0.23.1-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.2) ... Setting up itcl3:amd64 (3.4.4-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libitm1-riscv64-cross (14.2.0-19cross1) ... Setting up cpp-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up pkgconf:riscv64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgcc-s1-riscv64-cross (14.2.0-19cross1) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libc6-dev-riscv64-cross (2.41-6cross2) ... Setting up tcl (8.6.16) ... Setting up libasan8-riscv64-cross (14.2.0-19cross1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.2) ... Setting up cpp-riscv64-linux-gnu (4:14.2.0-1) ... Setting up libstdc++6-riscv64-cross (14.2.0-19cross1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libubsan1-riscv64-cross (14.2.0-19cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up liblsan0-riscv64-cross (14.2.0-19cross1) ... Setting up libtsan2-riscv64-cross (14.2.0-19cross1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up itk3:amd64 (3.4.2-5) ... Setting up iwidgets4 (4.1.1-4) ... Setting up tk8.6 (8.6.16-1) ... Setting up libgcc-14-dev-riscv64-cross (14.2.0-19cross1) ... Setting up libstdc++-14-dev-riscv64-cross (14.2.0-19cross1) ... Setting up debhelper (13.24.1) ... Setting up gcc-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up tk (8.6.16) ... Setting up g++-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up gcc-riscv64-linux-gnu (4:14.2.0-1) ... Setting up g++-riscv64-linux-gnu (4:14.2.0-1) ... Setting up tklib (0.9-1) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libgcc-s1:riscv64 (14.2.0-19) ... Setting up libc6:riscv64 (2.41-6) ... Setting up libnghttp3-9:riscv64 (1.8.0-1) ... Setting up libnghttp3-dev:riscv64 (1.8.0-1) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-9) ... Setting up libffi8:riscv64 (3.4.7-1) ... Setting up libasan8:riscv64 (14.2.0-19) ... Setting up libtasn1-6:riscv64 (4.20.0-2) ... Setting up libngtcp2-16:riscv64 (1.11.0-1) ... Setting up libtsan2:riscv64 (14.2.0-19) ... Setting up libbz2-1.0:riscv64 (1.0.8-6) ... Setting up libtasn1-6-dev:riscv64 (4.20.0-2) ... Setting up libstdc++6:riscv64 (14.2.0-19) ... Setting up liblsan0:riscv64 (14.2.0-19) ... Setting up libitm1:riscv64 (14.2.0-19) ... Setting up libtinfo6:riscv64 (6.5+20250216-2) ... Setting up libhtscodecs2:riscv64 (1.6.1-2) ... Setting up libexpat1:riscv64 (2.7.0-1) ... Setting up libzstd1:riscv64 (1.5.7+dfsg-1) ... Setting up libxau6:riscv64 (1:1.0.11-1) ... Setting up libxdmcp6:riscv64 (1:1.1.5-1) ... Setting up libkeyutils1:riscv64 (1.6.3-4) ... Setting up libxcb1:riscv64 (1.17.0-2+b1) ... Setting up libzstd-dev:riscv64 (1.5.7+dfsg-1) ... Setting up libxau-dev:riscv64 (1:1.0.11-1) ... Setting up liblzma5:riscv64 (5.6.4-1) ... Setting up libbrotli1:riscv64 (1.1.0-2+b7) ... Setting up libnghttp2-14:riscv64 (1.64.0-1) ... Setting up libevent-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up zlib1g:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:riscv64 (1:4.4.38-1) ... Setting up libcom-err2:riscv64 (1.47.2-1+b1) ... Setting up libngtcp2-dev:riscv64 (1.11.0-1) ... Setting up libgomp1:riscv64 (14.2.0-19) ... Setting up libkrb5support0:riscv64 (1.21.3-5) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-9) ... Setting up libhtscodecs-dev:riscv64 (1.6.1-2) ... Setting up libxdmcp-dev:riscv64 (1:1.1.5-1) ... Setting up libnettle8t64:riscv64 (3.10.1-1) ... Setting up libgmp10:riscv64 (2:6.3.0+dfsg-3) ... Setting up libncurses6:riscv64 (6.5+20250216-2) ... Setting up libp11-kit0:riscv64 (0.25.5-3) ... Setting up libunistring5:riscv64 (1.3-2) ... Setting up libpng16-16t64:riscv64 (1.6.47-1.1) ... Setting up libatomic1:riscv64 (14.2.0-19) ... Setting up libuuid1:riscv64 (2.40.4-5) ... Setting up libtcl8.6:riscv64 (8.6.16+dfsg-1) ... Setting up libncursesw6:riscv64 (6.5+20250216-2) ... Setting up libk5crypto3:riscv64 (1.21.3-5) ... Setting up liblzma-dev:riscv64 (5.6.4-1) ... Setting up libubsan1:riscv64 (14.2.0-19) ... Setting up libhogweed6t64:riscv64 (3.10.1-1) ... Setting up libcrypt-dev:riscv64 (1:4.4.38-1) ... Setting up libc6-dev:riscv64 (2.41-6) ... Setting up libx11-6:riscv64 (2:1.8.12-1) ... Setting up libgcc-14-dev:riscv64 (14.2.0-19) ... Setting up libstdc++-14-dev:riscv64 (14.2.0-19) ... Setting up libbrotli-dev:riscv64 (1.1.0-2+b7) ... Setting up libp11-kit-dev:riscv64 (0.25.5-3) ... Setting up libbz2-dev:riscv64 (1.0.8-6) ... Setting up libnghttp2-dev:riscv64 (1.64.0-1) ... Setting up libncurses-dev:riscv64 (6.5+20250216-2) ... Setting up libxcb1-dev:riscv64 (1.17.0-2+b1) ... Setting up libxrender1:riscv64 (1:0.9.10-1.1+b4) ... Setting up libssl3t64:riscv64 (3.4.1-1) ... Setting up itcl3:riscv64 (3.4.4-3) ... Setting up libx11-dev:riscv64 (2:1.8.12-1) ... Setting up libxext6:riscv64 (2:1.3.4-1+b3) ... Setting up libidn2-0:riscv64 (2.3.8-2) ... Setting up libunbound8:riscv64 (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:riscv64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:riscv64 (2.7.0-1) ... Setting up libfreetype6:riscv64 (2.13.3+dfsg-1) ... Setting up uuid-dev:riscv64 (2.40.4-5) ... Setting up comerr-dev:riscv64 (2.1-1.47.2-1+b1) ... Setting up libssl-dev:riscv64 (3.4.1-1) ... Setting up libidn2-dev:riscv64 (2.3.8-2) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-9) ... Setting up libxext-dev:riscv64 (2:1.3.4-1+b3) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libkrb5-3:riscv64 (1.21.3-5) ... Setting up libxss1:riscv64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:riscv64 (2.15.0-2.2) ... Setting up libssh2-1t64:riscv64 (1.11.1-1) ... Setting up libxrender-dev:riscv64 (1:0.9.10-1.1+b4) ... Setting up libldap2:riscv64 (2.6.9+dfsg-2) ... Setting up libgnutls30t64:riscv64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:riscv64 (3.8.9-2) ... Setting up libxft2:riscv64 (2.3.6-1+b4) ... Setting up libgmp-dev:riscv64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:riscv64 (3.10.1-1) ... Setting up tcl8.6-dev:riscv64 (8.6.16+dfsg-1) ... Setting up libtk8.6:riscv64 (8.6.16-1) ... Setting up libpng-dev:riscv64 (1.6.47-1.1) ... Setting up libpsl5t64:riscv64 (0.21.2-1.1+b1) ... Setting up libxss-dev:riscv64 (1:1.2.3-1+b3) ... Setting up libpsl-dev:riscv64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:riscv64 (2.13.3+dfsg-1) ... Setting up libgnutls-dane0t64:riscv64 (3.8.9-2) ... Setting up itk3:riscv64 (3.4.2-5) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:riscv64 (2.6.9+dfsg-2) ... Setting up libgssapi-krb5-2:riscv64 (1.21.3-5) ... Setting up libssh2-1-dev:riscv64 (1.11.1-1) ... Setting up tcl-dev:riscv64 (8.6.16) ... Setting up libngtcp2-crypto-gnutls8:riscv64 (1.11.0-1) ... Setting up libgnutls28-dev:riscv64 (3.8.9-2) ... Setting up itcl3-dev:riscv64 (3.4.4-3) ... Setting up libfontconfig-dev:riscv64 (2.15.0-2.2) ... Setting up libcurl3t64-gnutls:riscv64 (8.13.0~rc2-2) ... Setting up libngtcp2-crypto-gnutls-dev:riscv64 (1.11.0-1) ... Setting up libgssrpc4t64:riscv64 (1.21.3-5) ... Setting up librtmp-dev:riscv64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5clnt-mit12:riscv64 (1.21.3-5) ... Setting up libxft-dev:riscv64 (2.3.6-1+b4) ... Setting up libfontconfig1-dev:riscv64 (2.15.0-2.2) ... Setting up libkdb5-10t64:riscv64 (1.21.3-5) ... Setting up libstaden-read14t64:riscv64 (1.15.0-1.1+b2) ... Setting up tk8.6-dev:riscv64 (8.6.16-1) ... Setting up libkadm5srv-mit12:riscv64 (1.21.3-5) ... Setting up krb5-multidev:riscv64 (1.21.3-5) ... Setting up itk3-dev:riscv64 (3.4.2-5) ... Setting up libkrb5-dev:riscv64 (1.21.3-5) ... Setting up tk-dev:riscv64 (8.6.16) ... Setting up libcurl4-gnutls-dev:riscv64 (8.13.0~rc2-2) ... Setting up libstaden-read-dev:riscv64 (1.15.0-1.1+b2) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-riscv64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-riscv64-cross_14.2.0-19cross1 linux-libc-dev_6.12.20-1 Package versions: apt_2.9.34 apt-utils_2.9.34 autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b1 binutils_2.44-3 binutils-common_2.44-3 binutils-riscv64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-riscv64-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-riscv64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1-1 file_1:5.46-3 findutils_4.10.0-3 fontconfig-config_2.15.0-2.2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-riscv64-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-riscv64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-riscv64-linux-gnu_14.2.0-19cross1 gcc-14-riscv64-linux-gnu-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-riscv64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 itcl3_3.4.4-3 itcl3-dev_3.4.4-3 itk3_3.4.2-5 itk3-dev_3.4.2-5 iwidgets4_4.1.1-4 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_2.9.34 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-riscv64-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-riscv64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libc6-dev-riscv64-cross_2.41-6cross2 libc6-riscv64-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-3 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.13.0~rc2-2 libcurl4-gnutls-dev_8.13.0~rc2-2 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.0-1 libexpat1-dev_2.7.0-1 libfakeroot_1.37.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig-dev_2.15.0-2.2 libfontconfig1_2.15.0-2.2 libfontconfig1-dev_2.15.0-2.2 libfreetype-dev_2.13.3+dfsg-1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-riscv64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-riscv64-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-riscv64-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhtscodecs-dev_1.6.1-2 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libicu76_76.1-3 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-riscv64-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 liblsan0_14.2.0-19 liblsan0-riscv64-cross_14.2.0-19cross1 liblz4-1_1.10.0-4 liblzma-dev_5.6.4-1 liblzma5_5.6.4-1 libmagic-mgc_1:5.46-3 libmagic1t64_1:5.46-3 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpng-dev_1.6.47-1.1 libpng16-16t64_1.6.47-1.1 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.40.4-5 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstaden-read-dev_1.15.0-1.1+b2 libstaden-read14t64_1.15.0-1.1+b2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-riscv64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-riscv64-cross_14.2.0-19cross1 libsystemd0_257.4-3 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtcl8.6_8.6.16+dfsg-1 libtinfo6_6.5+20250216-2 libtk8.6_8.6.16-1 libtool_2.5.4-4 libtsan2_14.2.0-19 libtsan2-riscv64-cross_14.2.0-19cross1 libubsan1_14.2.0-19 libubsan1-riscv64-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.4-3 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.40.4-5 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxft-dev_2.3.6-1+b4 libxft2_2.3.6-1+b4 libxml2_2.12.7+dfsg+really2.9.14-0.3+b1 libxrender-dev_1:0.9.10-1.1+b4 libxrender1_1:0.9.10-1.1+b4 libxss-dev_1:1.2.3-1+b3 libxss1_1:1.2.3-1+b3 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.20-1 linux-libc-dev-riscv64-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.40.4-5 login.defs_1:4.17.3-2 m4_1.4.19-7 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mount_2.40.4-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-2 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6+b1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tcl_8.6.16 tcl-dev_8.6.16 tcl8.6_8.6.16+dfsg-1 tcl8.6-dev_8.6.16+dfsg-1 tk_8.6.16 tk-dev_8.6.16 tk8.6_8.6.16-1 tk8.6-dev_8.6.16-1 tklib_0.9-1 tzdata_2025b-1 util-linux_2.40.4-5 uuid-dev_2.40.4-5 x11-common_1:7.7+24 x11proto-core-dev_2024.1-1 x11proto-dev_2024.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden Binary: staden, staden-common Architecture: any all Version: 2.0.0+b11-5 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org> Homepage: https://sourceforge.net/projects/staden/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/staden Vcs-Git: https://salsa.debian.org/med-team/staden.git Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev Package-List: staden deb science optional arch=any staden-common deb science optional arch=all Checksums-Sha1: a51f0a004961511734a05fd54d8b2b1b0cfd6e32 4754651 staden_2.0.0+b11.orig.tar.gz a770dce5dc8fb2dad9e1e8a8a85ec4be8ef3b8ac 16800 staden_2.0.0+b11-5.debian.tar.xz Checksums-Sha256: cd7ee17626c25bc845ebd3f6311b5a538815fb73a0dfef2393001bf579ac9649 4754651 staden_2.0.0+b11.orig.tar.gz 34008f109d1a4c97659213035fe72c0059d9e4caa80b65d6e972e0055fc32ecf 16800 staden_2.0.0+b11-5.debian.tar.xz Files: ae59565ded12242c4c2728fbf2e185a7 4754651 staden_2.0.0+b11.orig.tar.gz 532a8c853e97a38ddbc4e95e93525f66 16800 staden_2.0.0+b11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXxuwcACgkQPCZ2P2xn 5uI/qw//dVWXAscRvuRAcyK8UpglQNEVAJLZJg7DO+832OyOfd84naHsh610D6yP xNL4dOhyV6K+2fm62wF72Hx9AY/vyXRMaiEirnxm4NskiNkXU5lN51hPnyMeEAz+ yTR4K65U7Dw7TchgIZ2YZ5DSk6k2Yxcr3hCSOBmvr9RRm3YuWVMelCo1uuPyTlCj S4NZ2wY+afWXvp4vDb0KUed8BeuX1XEomACWUJpXG8W6d5ZULPXN9ShRCuuDczoL aQ3IQC+TeKSU03x6jnJEyyEpRcUBv7F/+rauAQ+TGZGKqcc5746UkHhQQQaGi4aa QTU9z66CoQ/EQysdx+oMXJYgiepwIdjRhmINeOD25c62oAMktmRzgQZs3O+YYuEo ao/HxNR3/o1DACvXbM47Qhe7OSsz/hlBFIiiuLQm9/3Kz6NXnxbN/dKbBA1MZawZ Cijb6yOPJu4b0UqTv8khNnCK2EEM0pztLM61ntOhgS1VJfi2xzMDPAMJ/Vie7QRV snwTGa+vGINPhVMsCwXPzUeXz4/Dj52j3JV5Ty8dP65tuF/Po9OjTRkMDklFyGcz a0Gw/jsCAwqPVwvpli1b4jwGe0NqROF7SmLY+35+FBc3glZC2TShD6QzfYiXgNWY zFtUxsljJhcCD1htF4+6TIO2D8v7fijtaFRPlXkCbI3Wl9zBpNg= =Q0m3 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./staden_2.0.0+b11-5.dsc: unsupported subcommand dpkg-source: info: extracting staden in /<<PKGBUILDDIR>> dpkg-source: info: unpacking staden_2.0.0+b11.orig.tar.gz dpkg-source: info: unpacking staden_2.0.0+b11-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_help_menus_work.patch dpkg-source: info: applying fix_tcl_path.patch dpkg-source: info: applying fix_awk.patch dpkg-source: info: applying enable_setting_stadenroot.patch dpkg-source: info: applying include_xalloc.patch dpkg-source: info: applying use_mkstemp_instead_of_tmpnam.patch dpkg-source: info: applying fix_implicit_declaration.patch dpkg-source: info: applying autoconfig.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.YnkuJII9BE/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-7eb72fd0-8cd8-4738-b6c9-cf171231a84e SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org> dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' make spotless || true make[2]: Entering directory '/<<PKGBUILDDIR>>' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/<<PKGBUILDDIR>>' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_configure -- --enable-64bit \ --with-itcl=/usr/lib/tcltk/riscv64-linux-gnu \ --with-itk=/usr/lib/tcltk/riscv64-linux-gnu ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu --enable-64bit --with-itcl=/usr/lib/tcltk/riscv64-linux-gnu --with-itk=/usr/lib/tcltk/riscv64-linux-gnu checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C11 features... none needed checking for riscv64-linux-gnu-g++... riscv64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether riscv64-linux-gnu-g++ accepts -g... yes checking for riscv64-linux-gnu-g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.13.0-rc2 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for riscv64-linux-gnu-gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... riscv64-linux-gnu-gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... no checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for riscv64-linux-gnu-ranlib... riscv64-linux-gnu-ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... yes checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.1.0-31-amd64 checking for riscv64-linux-gnu-ar... riscv64-linux-gnu-ar checking if compiler accepts -m64 flag... no configure: WARNING: 64bit support being disabled -- don't know magic for this platform checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... using long checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/riscv64-linux-gnu/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/riscv64-linux-gnu/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/riscv64-linux-gnu/itcl3.4 Itk: /usr/lib/tcltk/riscv64-linux-gnu/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build -a make -j1 make[1]: Entering directory '/<<PKGBUILDDIR>>' cd Misc && make -f /<<PKGBUILDDIR>>/./Misc/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./Misc SUBDIR=Misc all make[2]: Entering directory '/<<PKGBUILDDIR>>/Misc' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o crash.o -c crash.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o date.o -c date.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o files.o -c files.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find.o -c find.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o shell.o -c shell.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o strings.o -c strings.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o error.o -c error.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o array.o -c array.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o locks.o -c locks.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c parse_db.c: In function ‘parse_entry’: parse_db.c:234:66: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from parse_db.c:19: In function ‘sprintf’, inlined from ‘parse_entry’ at parse_db.c:234:7: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c mkdir -p /<<PKGBUILDDIR>>/lib 2>/dev/null touch /<<PKGBUILDDIR>>/lib/.dir riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/Misc' cd tk_utils && make -f /<<PKGBUILDDIR>>/./tk_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./tk_utils SUBDIR=tk_utils all make[2]: Entering directory '/<<PKGBUILDDIR>>/tk_utils' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c In file included from tkRaster.c:45: tkRaster.c: In function ‘DrawEnvIndex’: tkRaster.c:2266:62: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2266 | entryPtr = Tcl_FindHashEntry (&(RasterPtr->drawEnvTable), (char*)drawenvno); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function ‘CreateDrawEnv’: tkRaster.c:2353:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2353 | (char*) (RasterPtr->drawEnvCount), | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ tkRaster.c: In function ‘DestroyDrawEnv’: tkRaster.c:2381:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2381 | (char*)(drawenvptr->index)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c tkTraceDisp.c: In function ‘trace_draw_numbers’: tkTraceDisp.c:746:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from tkTraceDisp.c:2: In function ‘sprintf’, inlined from ‘trace_draw_numbers’ at tkTraceDisp.c:746:6: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c capture.c: In function ‘tcl_capture’: capture.c:53:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/<<PKGBUILDDIR>>/tk_utils' cd text_utils && make -f /<<PKGBUILDDIR>>/./text_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./text_utils SUBDIR=text_utils all make[2]: Entering directory '/<<PKGBUILDDIR>>/text_utils' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc make[2]: Leaving directory '/<<PKGBUILDDIR>>/text_utils' cd seq_utils && make -f /<<PKGBUILDDIR>>/./seq_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/<<PKGBUILDDIR>>/seq_utils' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align.o -c align.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c renz_utils.c: In function ‘SetREnzColour’: renz_utils.c:1049:35: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from renz_utils.c:3: In function ‘sprintf’, inlined from ‘SetREnzColour’ at renz_utils.c:1049:5: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c sequence_formats.c: In function ‘get_embl_format_seq’: sequence_formats.c:729:29: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function ‘add_feat’: sequence_formats.c:481:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edge.o -c edge.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libseq_utils.so align.o align_lib_old.o align_ss.o align_ss2.o align_sv.o dna_utils.o genetic_code.o renz_utils.o sequence_formats.o scramble.o base_comp.o open_reading_frames.o edge.o search_utils.o align_lib.o read_matrix.o filter_words.o -ltext_utils -lmisc -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/seq_utils' cd mutlib && make -f /<<PKGBUILDDIR>>/./mutlib/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./mutlib SUBDIR=mutlib all make[2]: Entering directory '/<<PKGBUILDDIR>>/mutlib' riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o align.o -c align.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o basecall.o -c basecall.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o caller.o -c caller.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o caller_snr.o -c caller_snr.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o caller_base.o -c caller_base.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o caller_level.o -c caller_level.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dnatable.o -c dnatable.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o muttag.o -c muttag.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutationtag.o -c mutationtag.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutationtag_utils.o -c mutationtag_utils.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o pathutil.o -c pathutil.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o peakcall.o -c peakcall.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o stringlist.o -c stringlist.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagarray.o -c tagarray.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o trace.o -c trace.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o validate.o -c validate.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sp_align_lib.o -c sp_align_lib.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sp_alignment.o -c sp_alignment.cpp sp_alignment.cpp: In function ‘void sp::store_hashn(Hash*)’: sp_alignment.cpp:754:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sp_hash_lib.o -c sp_hash_lib.cpp sp_hash_lib.cpp: In function ‘int sp::hash_word8n(char*, int*, int, int, short unsigned int*)’: sp_hash_lib.cpp:57:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 57 | register int i; | ^ sp_hash_lib.cpp:58:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:58:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:58:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:59:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int unsigned short luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq8n(char*, int*, int, int)’: sp_hash_lib.cpp:99:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘int sp::hash_word4n(char*, int*, int, int, unsigned char*)’: sp_hash_lib.cpp:156:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 156 | register int i; | ^ sp_hash_lib.cpp:157:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:157:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:157:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:158:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 158 | register char unsigned luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq4n(char*, int*, int, int)’: sp_hash_lib.cpp:197:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘void sp::remdup(int*, int*, int*, int*)’: sp_hash_lib.cpp:411:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 411 | register int i; | ^ riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sp_matrix.o -c sp_matrix.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracediff.o -c tracediff.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracediff_helper.o -c tracediff_helper.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracediff_mutations.o -c tracediff_mutations.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracediff_parameters.o -c tracediff_parameters.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracediff_validate.o -c tracediff_validate.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign.o -c tracealign.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign_cache.o -c tracealign_cache.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign_helper.o -c tracealign_helper.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign_interpolate.o -c tracealign_interpolate.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign_preprocess.o -c tracealign_preprocess.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tracealign_validate.o -c tracealign_validate.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan.o -c mutscan.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan_helper.o -c mutscan_helper.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan_validate.o -c mutscan_validate.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan_analysis.o -c mutscan_analysis.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan_preprocess.o -c mutscan_preprocess.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mutscan_parameters.o -c mutscan_parameters.cpp cp /<<PKGBUILDDIR>>/./mutlib/mutlib.def 2>&- make[2]: [/<<PKGBUILDDIR>>/./mutlib/Makefile:81: /<<PKGBUILDDIR>>/lib/libmutlib.so] Error 1 (ignored) riscv64-linux-gnu-g++ -shared -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libmutlib.so align.o basecall.o caller.o caller_snr.o caller_base.o caller_level.o dnatable.o muttag.o mutationtag.o mutationtag_utils.o pathutil.o peakcall.o stringlist.o tagarray.o trace.o validate.o read_matrix.o sp_align_lib.o sp_alignment.o sp_hash_lib.o sp_matrix.o tracediff.o tracediff_helper.o tracediff_mutations.o tracediff_parameters.o tracediff_validate.o tracealign.o tracealign_cache.o tracealign_helper.o tracealign_interpolate.o tracealign_preprocess.o tracealign_validate.o mutscan.o mutscan_helper.o mutscan_validate.o mutscan_analysis.o mutscan_preprocess.o mutscan_parameters.o -lseq_utils -ltk_utils -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/mutlib' cd abi && make -f /<<PKGBUILDDIR>>/./abi/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./abi SUBDIR=abi all make[2]: Entering directory '/<<PKGBUILDDIR>>/abi' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./abi -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o abiIO.o -c abiIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./abi -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./abi -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./abi -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./abi -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/abi' cd alf && make -f /<<PKGBUILDDIR>>/./alf/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./alf SUBDIR=alf all make[2]: Entering directory '/<<PKGBUILDDIR>>/alf' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./alf -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c alfsplit.c: In function ‘main’: alfsplit.c:347:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘readIndexEntry’: alfsplit.c:129:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘main’: alfsplit.c:312:29: warning: ‘%s’ directive writing up to 2559 bytes into a region of size 25 [-Wformat-overflow=] 312 | sprintf (fname,"%sALF",name[i]) ; | ^~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from alfsplit.c:30: In function ‘sprintf’, inlined from ‘main’ at alfsplit.c:312:6: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 4 and 2563 bytes into a destination of size 25 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/alf' cd g && make -f /<<PKGBUILDDIR>>/./g/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./g SUBDIR=g all make[2]: Entering directory '/<<PKGBUILDDIR>>/g' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc make[2]: Leaving directory '/<<PKGBUILDDIR>>/g' cd trev && make -f /<<PKGBUILDDIR>>/./trev/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./trev SUBDIR=trev all make[2]: Entering directory '/<<PKGBUILDDIR>>/trev' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<<PKGBUILDDIR>>/trev' cd primer3 && make -f /<<PKGBUILDDIR>>/./primer3/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./primer3 SUBDIR=primer3 all make[2]: Entering directory '/<<PKGBUILDDIR>>/primer3' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<<PKGBUILDDIR>>/primer3' cd primer3/src && make -f /<<PKGBUILDDIR>>/./primer3/src/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./primer3/src SUBDIR=primer3/src all make[2]: Entering directory '/<<PKGBUILDDIR>>/primer3/src' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c primer3_main.c: In function ‘pr_safe_malloc’: primer3_main.c:520:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c: In function ‘boulder_print_oligos’: primer3_main.c:416:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 2147483647] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from primer3_main.c:7: In function ‘sprintf’, inlined from ‘boulder_print_oligos’ at primer3_main.c:416:7: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function ‘main’: primer3_main.c:234:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function ‘boulder_print_pairs’, inlined from ‘main’ at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function ‘sprintf’, inlined from ‘boulder_print_pairs’ at primer3_main.c:234:7, inlined from ‘main’ at primer3_main.c:109:3: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/primer3/src' cd gap4 && make -f /<<PKGBUILDDIR>>/./gap4/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./gap4 SUBDIR=gap4 all make[2]: Entering directory '/<<PKGBUILDDIR>>/gap4' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-local.o -c gap-local.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-remote.o -c gap-remote.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-if.o -c gap-if.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-init.o -c gap-init.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-dbstruct.o -c gap-dbstruct.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-create.o -c gap-create.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-io.o -c gap-io.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o IO1.o -c IO1.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o io-reg.o -c io-reg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c actf.c: In function ‘actf_lock’: actf.c:246:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | write(fd, db_path, strlen(db_path)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o IO2.o -c IO2.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqInfo.o -c seqInfo.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o parse_ft.o -c parse_ft.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o IO3.o -c IO3.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o io_utils.o -c io_utils.c io_utils.c: In function ‘template_name_to_number’: io_utils.c:38:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 38 | return (int)Tcl_GetHashValue(hash); | ^ io_utils.c: In function ‘read_name_to_number’: io_utils.c:84:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 84 | return (int)Tcl_GetHashValue(hash); | ^ In file included from IO1.h:50, from io_utils.h:6, from io_utils.c:6: io_utils.c: In function ‘cache_template_name’: io_utils.c:549:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 549 | Tcl_SetHashValue(hash, (ClientData)number); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2556:64: note: in definition of macro ‘Tcl_SetHashValue’ 2556 | #define Tcl_SetHashValue(h, value) ((h)->clientData = (void *)(value)) | ^~~~~ io_utils.c: In function ‘cache_read_name’: io_utils.c:566:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 566 | Tcl_SetHashValue(hash, (ClientData)number); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2556:64: note: in definition of macro ‘Tcl_SetHashValue’ 2556 | #define Tcl_SetHashValue(h, value) ((h)->clientData = (void *)(value)) | ^~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o io_handle.o -c io_handle.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-tcl.o -c gap-tcl.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c tk-io-reg.c: In function ‘tk_result_is_consistency’: tk-io-reg.c:604:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 604 | if (args.cons_id == (int)gen.data) { | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o newgap_cmds.o -c newgap_cmds.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o init.o -c init.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o bubbl3.o -c bubbl3.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. 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-I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o probe.o -c probe.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o template.o -c template.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘template_callback’: template_display.c:2354:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 2354 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, t->frame, | ^~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from template_display.c:2: In function ‘sprintf’, inlined from ‘template_callback’ at template_display.c:2354:3: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o auto_assemble.o -c auto_assemble.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c readpair.c: In function ‘readpair_obj_func’: readpair.c:175:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 989 and 999 [-Wformat-overflow=] 175 | sprintf(cmd, "CreateTemplateDisplay %d {%s}", | ^~ 176 | *handle, c_list); | ~~~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from readpair.c:18: In function ‘sprintf’, inlined from ‘readpair_obj_func’ at readpair.c:175:3: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1060 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o complement.o -c complement.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dstrand.o -c dstrand.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o oligo_sel.o -c oligo_sel.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o alter_rel.o -c alter_rel.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o stop_codon.o -c stop_codon.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o assemble_direct.o -c assemble_direct.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagU2.o -c tagU2.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o mess.o -c mess.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o copy_db.o -c copy_db.c copy_db.c: In function ‘copy_read_name’: copy_db.c:118:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 118 | sprintf(num, "#%d", iter++); | ^~ copy_db.c:118:30: note: directive argument in the range [1, 2147483646] 118 | sprintf(num, "#%d", iter++); | ^~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from copy_db.c:1: In function ‘sprintf’, inlined from ‘copy_read_name’ at copy_db.c:118:3: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o contig_order.o -c contig_order.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o clip.o -c clip.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o notes.o -c notes.c notes.c: In function ‘time_t2str’: notes.c:829:21: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 829 | sprintf(buf, "%s (%ld)", buf2, (long)t); | ^~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from notes.c:11: In function ‘sprintf’, inlined from ‘time_t2str’ at notes.c:829:5: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 5 and 1047 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o consistency_display.o -c consistency_display.c consistency_display.c: In function ‘consistency_join’: consistency_display.c:160:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 160 | gen.data = (void *)remove_dup; | ^ consistency_display.c: In function ‘consistency_callback’: consistency_display.c:883:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 883 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, c->frame, | ^~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from consistency_display.c:1: In function ‘sprintf’, inlined from ‘consistency_callback’ at consistency_display.c:883:3: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o consistency_canvas_box.o -c consistency_canvas_box.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o confidence_graph.o -c confidence_graph.c confidence_graph.c: In function ‘confidence_callback’: confidence_graph.c:531:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 531 | jdata->generic.data = (void *)conf->cons_id; | ^ confidence_graph.c:624:44: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 624 | confidence_join(io, c, conf, (int)jdata->generic.data); | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o reading_coverage.o -c reading_coverage.c reading_coverage.c: In function ‘reading_coverage_callback’: reading_coverage.c:552:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 552 | jdata->generic.data = (void *)rcov->cons_id; | ^ reading_coverage.c:645:50: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 645 | reading_coverage_join(io, c, rcov, (int)jdata->generic.data); | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o readpair_coverage.o -c readpair_coverage.c readpair_coverage.c: In function ‘readpair_coverage_callback’: readpair_coverage.c:500:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 500 | jdata->generic.data = (void *)rcov->cons_id; | ^ readpair_coverage.c:594:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 594 | readpair_coverage_join(io, c, rcov, (int)jdata->generic.data); | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o strand_coverage.o -c strand_coverage.c strand_coverage.c: In function ‘strand_coverage_callback’: strand_coverage.c:503:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 503 | jdata->generic.data = (void *)scov->cons_id; | ^ strand_coverage.c:541:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 541 | strand_coverage_join(io, c, scov, (int)jdata->generic.data); | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_fragments.o -c find_fragments.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o vseqs.o -c vseqs.c In file included from vseqs.c:3: vseqs.c: In function ‘new_vcontig’: vseqs.c:60:55: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 60 | hash = Tcl_CreateHashEntry(&db->num_hash, (char *)rnum, | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ vseqs.c: In function ‘new_vrseq’: vseqs.c:158:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 158 | hash = Tcl_CreateHashEntry(&vc->num_hash, (char *)(vrseq->rnum), &new); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ vseqs.c: In function ‘del_vrseq’: vseqs.c:215:49: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 215 | hash = Tcl_FindHashEntry(&vc->num_hash, (char *)(vrseq->rnum)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ vseqs.c: In function ‘vrseq_index2ptr’: vseqs.c:409:45: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 409 | hash = Tcl_FindHashEntry(&vc->num_hash, (char *)num); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o legacy_f2c.o -c legacy_f2c.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o f2c.o -c f2c.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkEdUtils.o -c tkEdUtils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edInterface.o -c edInterface.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edUtils2.o -c edUtils2.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagU1.o -c tagU1.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o undo.o -c undo.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edExtend.o -c edExtend.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edCommands.o -c edCommands.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o edMutations.o -c edMutations.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagEditor.o -c tagEditor.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o searchUtils.o -c searchUtils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:281:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:281:18: note: assuming directive output of 12 bytes 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:281:5: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_cons.o -c tman_cons.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_diff.o -c tman_diff.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o contigEditor.o -c contigEditor.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o join.o -c join.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o oligo.o -c oligo.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libgap.so -L/<<PKGBUILDDIR>>/lib gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o IO2.o seqInfo.o parse_ft.o IO3.o io_utils.o io_handle.o gap-tcl.o tk-io-reg.o gap_cli_arg.o gap_globals.o newgap_cmds.o init.o consen.o gap_hash.o qual.o qualIO.o bubbl3.o tagdb.o notedb.o active_tags.o dbcheck.o clones.o extract.o preass.o list.o reactions.o probe.o template.o template_display.o ruler_display.o gap_canvas_box.o hash.o gap_array.o show_relationships.o fij.o hash_lib.o do_fij.o auto_assemble.o dis_readings.o find_repeats.o break_contig.o quality_plot.o readpair.o contig_selector.o complement.o cs-object.o list_proc.o dstrand.o oligo_sel.o primlib.o alter_rel.o restriction_enzymes.o stop_codon.o assemble_direct.o check_assembly.o tagU2.o mess.o find_oligo.o copy_db.o contig_order.o clip.o notes.o consistency_display.o consistency_canvas_box.o confidence_graph.o reading_coverage.o readpair_coverage.o strand_coverage.o find_fragments.o vseqs.o legacy_f2c.o f2c.o shuffle_pads.o auto_break.o tkEditor.o tkEdNames.o tkEdUtils.o edInterface.o edUtils2.o tagU1.o undo.o edExtend.o edCommands.o edMutations.o tagEditor.o searchUtils.o tman_interface.o tman_display.o tman_cons.o tman_diff.o contigEditor.o join.o oligo.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltk_utils -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lg -lmutlib -lmisc -lprimer3 -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o copy_db_main.o -c copy_db_main.c copy_db_main.c: In function ‘main’: copy_db_main.c:86:9: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | scanf("%c", &ans); | ^~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o text-io-reg.o -c text-io-reg.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o copy_db gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o copy_db.o copy_db_main.o text-io-reg.o io_utils.o io_handle.o -lg -ltext_utils -lmisc -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/gap4' cd prefinish && make -f /<<PKGBUILDDIR>>/./prefinish/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./prefinish SUBDIR=prefinish all make[2]: Entering directory '/<<PKGBUILDDIR>>/prefinish' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish.o -c finish.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_hash.o -c finish_hash.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_long.o -c finish_long.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_main.o -c finish_main.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_utils.o -c finish_utils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_walk.o -c finish_walk.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_reverse.o -c finish_reverse.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_filter.o -c finish_filter.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o finish_pcr.o -c finish_pcr.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dust.o -c dust.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libprefinish.so finish.o finish_hash.o finish_long.o finish_main.o finish_utils.o finish_walk.o finish_reverse.o finish_filter.o finish_pcr.o dust.o -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap -lprimer3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o insert_size_dist.o -c insert_size_dist.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o insert_size_dist insert_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<<PKGBUILDDIR>>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o read_size_dist.o -c read_size_dist.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_size_dist read_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<<PKGBUILDDIR>>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./prefinish -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o read_conf_dist.o -c read_conf_dist.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_conf_dist read_conf_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<<PKGBUILDDIR>>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<<PKGBUILDDIR>>/prefinish' cd haplo && make -f /<<PKGBUILDDIR>>/./haplo/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./haplo SUBDIR=haplo all make[2]: Entering directory '/<<PKGBUILDDIR>>/haplo' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o haplo_tcl.o -c haplo_tcl.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o haplo_snps.o -c haplo_snps.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o haplo_split.o -c haplo_split.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o haplo_cons.o -c haplo_cons.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./haplo -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itk/generic -I/<<PKGBUILDDIR>>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libhaplo.so haplo_tcl.o haplo_snps.o haplo_split.o haplo_cons.o -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<<PKGBUILDDIR>>/haplo' cd eba && make -f /<<PKGBUILDDIR>>/./eba/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./eba SUBDIR=eba all make[2]: Entering directory '/<<PKGBUILDDIR>>/eba' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./eba -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o qual.o -c qual.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./eba -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o conf.o -c conf.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/eba' cd init_exp && make -f /<<PKGBUILDDIR>>/./init_exp/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/<<PKGBUILDDIR>>/init_exp' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./init_exp -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o init_exp.o -c init_exp.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/init_exp' cd get_scf_field && make -f /<<PKGBUILDDIR>>/./get_scf_field/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/<<PKGBUILDDIR>>/get_scf_field' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./get_scf_field -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc make[2]: Leaving directory '/<<PKGBUILDDIR>>/get_scf_field' cd spin && make -f /<<PKGBUILDDIR>>/./spin/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./spin SUBDIR=spin all make[2]: Entering directory '/<<PKGBUILDDIR>>/spin' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_reg.o -c seq_reg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_reg_cmds.o -c seq_reg_cmds.c seq_reg_cmds.c: In function ‘GetActiveSeqName’: seq_reg_cmds.c:919:32: warning: zero-length gnu_printf format string [-Wformat-zero-length] 919 | vTcl_SetResult(interp, ""); | ^~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o raster_cmds.o -c raster_cmds.c raster_cmds.c: In function ‘RasterResults’: raster_cmds.c:250:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 250 | zoom = (int)gen.result; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_raster.o -c seq_raster.c seq_raster.c: In function ‘GetRasterZoom’: seq_raster.c:1512:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1512 | result = (int)gen.result; | ^ seq_raster.c: In function ‘seq_raster_callback’: seq_raster.c:3012:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 3012 | jdata->info.result = (void *)zoom; | ^ seq_raster.c:3034:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 3034 | jdata->info.result = (void *)zoom; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sequtils.o -c sequtils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_results.o -c seq_results.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_sendto.o -c seq_sendto.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o spin_globals.o -c spin_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seq_plot_funcs.o -c seq_plot_funcs.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqed.o -c seqed.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkSeqed.o -c tkSeqed.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkSeqedUtils.o -c tkSeqedUtils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkSeqedNames.o -c tkSeqedNames.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqed_write.o -c seqed_write.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqedInterface.o -c seqedInterface.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqed_translate.o -c seqed_translate.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqed_restriction_enzymes.o -c seqed_restriction_enzymes.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o seqed_search.o -c seqed_search.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sequence_pair_display.o -c sequence_pair_display.c sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:316:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 316 | sprintf(tmp, "%10d", i*10); | ^ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from /<<PKGBUILDDIR>>/./tk_utils/tkRaster.h:9, from seq_reg.h:6, from sequence_pair_display.c:4: In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:316:2: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:344:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 344 | sprintf(tmp, "%10d", i*10); | ^ In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:344:2: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o emboss_input_funcs.o -c emboss_input_funcs.c emboss_input_funcs.c: In function ‘emboss_graph_callback’: emboss_input_funcs.c:260:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 260 | jdata->info.result = (void *)id; | ^ emboss_input_funcs.c: In function ‘read_emboss_data_file’: emboss_input_funcs.c:402:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:437:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fscanf(fp, "##Number %d\n", &data->n_data_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:444:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:470:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 470 | fscanf(fp, "##Number %d\n", &data->n_graph_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:477:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 477 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:518:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fscanf(fp, "%lf %lf\n", &pos, &p_array[i].score); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c: In function ‘init_emboss_stick_create’: emboss_input_funcs.c:658:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 658 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:659:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 659 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:660:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 660 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o readpam.o -c readpam.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o compare_spans.o -c compare_spans.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_hash.o -c sip_hash.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_similar_spans.o -c sip_similar_spans.c sip_similar_spans.c: In function ‘similar_spans_callback’: sip_similar_spans.c:289:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 289 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_find_identity.o -c sip_find_identity.c sip_find_identity.c: In function ‘identities_callback’: sip_find_identity.c:210:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 210 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_quick_scan.o -c sip_quick_scan.c sip_quick_scan.c: In function ‘quick_scan_callback’: sip_quick_scan.c:234:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 234 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_align.o -c sip_align.c sip_align.c: In function ‘align_callback’: sip_align.c:181:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 181 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_globals.o -c sip_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_cmds.o -c sip_cmds.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_results.o -c sip_results.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o rescan_matches.o -c rescan_matches.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o probs.o -c probs.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sim.o -c sim.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sip_sim.o -c sip_sim.c sip_sim.c: In function ‘sim_callback’: sip_sim.c:197:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 197 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o init.o -c init.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_globals.o -c nip_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_cmds.o -c nip_cmds.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_base_comp.o -c nip_base_comp.c nip_base_comp.c: In function ‘plot_base_comp_callback’: nip_base_comp.c:183:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 183 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_gene_search.o -c nip_gene_search.c nip_gene_search.c: In function ‘plot_gene_search_callback’: nip_gene_search.c:206:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 206 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_trna_search.o -c nip_trna_search.c nip_trna_search.c: In function ‘trna_search_callback’: nip_trna_search.c:173:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 173 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o codon_content.o -c codon_content.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_stop_codon.o -c nip_stop_codon.c nip_stop_codon.c: In function ‘nip_stop_codons_callback’: nip_stop_codon.c:195:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 195 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o trna_search.o -c trna_search.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o splice_search.o -c splice_search.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_splice_search.o -c nip_splice_search.c nip_splice_search.c: In function ‘splice_search_callback’: nip_splice_search.c:183:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 183 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_string_search.o -c nip_string_search.c nip_string_search.c: In function ‘nip_string_search_callback’: nip_string_search.c:170:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 170 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_wtmatrix_search.o -c nip_wtmatrix_search.c nip_wtmatrix_search.c: In function ‘nip_wtmatrix_search_callback’: nip_wtmatrix_search.c:167:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 167 | jdata->info.result = (void *)id; | ^ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_restriction_enzymes.o -c nip_restriction_enzymes.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o nip_canvas_box.o -c nip_canvas_box.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dinuc_freqs.o -c dinuc_freqs.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./spin -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libspin.so seq_reg.o seq_reg_cmds.o raster_cmds.o seq_raster.o sequtils.o seq_results.o seq_sendto.o spin_globals.o seq_plot_funcs.o seqed.o tkSeqed.o tkSeqedUtils.o tkSeqedNames.o seqed_write.o seqedInterface.o seqed_translate.o seqed_restriction_enzymes.o seqed_search.o sequence_pair_display.o emboss_input_funcs.o readpam.o compare_spans.o sip_hash.o sip_similar_spans.o sip_find_identity.o sip_quick_scan.o sip_align.o sip_globals.o sip_cmds.o sip_results.o rescan_matches.o probs.o sim.o sip_sim.o init.o nip_globals.o nip_cmds.o nip_base_comp.o nip_gene_search.o nip_trna_search.o codon_content.o nip_stop_codon.o trna_search.o splice_search.o nip_splice_search.o nip_string_search.o nip_wtmatrix_search.o nip_restriction_enzymes.o nip_canvas_box.o dinuc_freqs.o -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lseq_utils -lmisc make[2]: Leaving directory '/<<PKGBUILDDIR>>/spin' cd vector_clip && make -f /<<PKGBUILDDIR>>/./vector_clip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./vector_clip SUBDIR=vector_clip all make[2]: Entering directory '/<<PKGBUILDDIR>>/vector_clip' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./vector_clip -I/usr/include -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o vector_clip.o -c vector_clip.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o vector_clip vector_clip.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/vector_clip' cd tracediff && make -f /<<PKGBUILDDIR>>/./tracediff/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./tracediff SUBDIR=tracediff all make[2]: Entering directory '/<<PKGBUILDDIR>>/tracediff' riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./tracediff -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o main.o -c main.cpp riscv64-linux-gnu-g++ -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tracediff main.o -lmutlib -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<<PKGBUILDDIR>>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<<PKGBUILDDIR>>/tracediff' cd screen_seq && make -f /<<PKGBUILDDIR>>/./screen_seq/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./screen_seq SUBDIR=screen_seq all make[2]: Entering directory '/<<PKGBUILDDIR>>/screen_seq' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./screen_seq -I/<<PKGBUILDDIR>>/./text_utils -I/usr/include -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o screen_seq.o -c screen_seq.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o screen_seq screen_seq.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/screen_seq' cd qclip && make -f /<<PKGBUILDDIR>>/./qclip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./qclip SUBDIR=qclip all make[2]: Entering directory '/<<PKGBUILDDIR>>/qclip' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./qclip -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o qclip.o -c qclip.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./qclip -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o consen.o -c consen.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./qclip -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o qclip qclip.o consen.o seqInfo.o -ltext_utils -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/qclip' cd polyA_clip && make -f /<<PKGBUILDDIR>>/./polyA_clip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./polyA_clip SUBDIR=polyA_clip all make[2]: Entering directory '/<<PKGBUILDDIR>>/polyA_clip' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./polyA_clip -I/usr/include -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o polyA_clip.o -c polyA_clip.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./polyA_clip -I/usr/include -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o polyA_clip polyA_clip.o seqInfo.o -lseq_utils -ltext_utils -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/polyA_clip' cd stops && make -f /<<PKGBUILDDIR>>/./stops/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./stops SUBDIR=stops all make[2]: Entering directory '/<<PKGBUILDDIR>>/stops' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./stops -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o stops.o -c stops.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o stops stops.o -ltext_utils -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/stops' cd pregap4 && make -f /<<PKGBUILDDIR>>/./pregap4/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/<<PKGBUILDDIR>>/pregap4' /<<PKGBUILDDIR>>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for Pregap4. make[2]: Leaving directory '/<<PKGBUILDDIR>>/pregap4' cd make_weights && make -f /<<PKGBUILDDIR>>/./make_weights/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./make_weights SUBDIR=make_weights all make[2]: Entering directory '/<<PKGBUILDDIR>>/make_weights' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./make_weights -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./text_utils -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o make_weights.o -c make_weights.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o make_weights make_weights.o -lseq_utils -ltext_utils -lmisc -lm -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/make_weights' cd find_renz && make -f /<<PKGBUILDDIR>>/./find_renz/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./find_renz SUBDIR=find_renz all make[2]: Entering directory '/<<PKGBUILDDIR>>/find_renz' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./find_renz -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o find_renz.o -c find_renz.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o find_renz find_renz.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/find_renz' cd spin_emboss && make -f /<<PKGBUILDDIR>>/./spin_emboss/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/<<PKGBUILDDIR>>/spin_emboss' /<<PKGBUILDDIR>>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for spin_emboss. make[2]: Leaving directory '/<<PKGBUILDDIR>>/spin_emboss' cd copy_reads && make -f /<<PKGBUILDDIR>>/./copy_reads/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./copy_reads SUBDIR=copy_reads all make[2]: Entering directory '/<<PKGBUILDDIR>>/copy_reads' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./copy_reads -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o copy_reads_globals.o -c copy_reads_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./copy_reads -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o copy_reads.o -c copy_reads.c copy_reads.c: In function ‘create_si_struct’: copy_reads.c:125:26: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 125 | sprintf(comment, "%s %s", tag_text, io_name(io)); | ^~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from copy_reads.c:4: In function ‘sprintf’, inlined from ‘create_si_struct’ at copy_reads.c:125:5: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ copy_reads.c: In function ‘copy_reads’: copy_reads.c:409:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 409 | sprintf(comment, "%s %s", tag_text, io_name(io_to)); | ^~ In function ‘sprintf’, inlined from ‘copy_reads’ at copy_reads.c:409:6: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./copy_reads -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./copy_reads -I/<<PKGBUILDDIR>>/./Misc -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libcopy_reads.so copy_reads_globals.o copy_reads.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<<PKGBUILDDIR>>/copy_reads' cd hetins && make -f /<<PKGBUILDDIR>>/./hetins/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./hetins SUBDIR=hetins all make[2]: Entering directory '/<<PKGBUILDDIR>>/hetins' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./hetins -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o hetins.o -c hetins.c riscv64-linux-gnu-g++ -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<<PKGBUILDDIR>>/hetins' cd mutscan && make -f /<<PKGBUILDDIR>>/./mutscan/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./mutscan SUBDIR=mutscan all make[2]: Entering directory '/<<PKGBUILDDIR>>/mutscan' riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./mutscan -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o main.o -c main.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./mutscan -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o pathutil.o -c pathutil.cpp riscv64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./mutscan -I/<<PKGBUILDDIR>>/./Misc -I/usr/include -I/<<PKGBUILDDIR>>/. -I/<<PKGBUILDDIR>>/./mutlib -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o stringlist.o -c stringlist.cpp riscv64-linux-gnu-g++ -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o mutscan main.o pathutil.o stringlist.o -lmutlib -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<<PKGBUILDDIR>>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<<PKGBUILDDIR>>/mutscan' cd convert && make -f /<<PKGBUILDDIR>>/./convert/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./convert SUBDIR=convert all make[2]: Entering directory '/<<PKGBUILDDIR>>/convert' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o list.o -c list.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o main.o -c main.c main.c: In function ‘get_db’: main.c:87:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(name, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:92:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(version, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o dapIO.o -c dapIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o dapDB.o -c dapDB.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o bapIO.o -c bapIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o bapDB.o -c bapDB.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o gapDB.o -c gapDB.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o process.o -c process.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./convert -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<<PKGBUILDDIR>>/./gap4 -I/<<PKGBUILDDIR>>/./g -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -o flat_sd.o -c flat_sd.c riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o staden_convert list.o main.o dapIO.o dapDB.o bapIO.o bapDB.o gapDB.o process.o flat_sd.o -lm -lgap -lg -lprimer3 -lmutlib -ltk_utils -lseq_utils -lmisc -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<<PKGBUILDDIR>>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<<PKGBUILDDIR>>/convert' cd gap5 && make -f /<<PKGBUILDDIR>>/./gap5/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./gap5 SUBDIR=gap5 all make[2]: Entering directory '/<<PKGBUILDDIR>>/gap5' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_iface_g.o -c tg_iface_g.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o b+tree2.o -c b+tree2.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o hache_table.o -c hache_table.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_gio.o -c tg_gio.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_cache.o -c tg_cache.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_contig.o -c tg_contig.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_sequence.o -c tg_sequence.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_track.o -c tg_track.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_bin.o -c tg_bin.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_utils.o -c tg_utils.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_register.o -c tg_register.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_tracks.o -c tg_tracks.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_anno.o -c tg_anno.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_library.o -c tg_library.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_scaffold.o -c tg_scaffold.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_check.o -c tg_check.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_tcl.o -c tg_tcl.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_index.o -c tg_index.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o newgap5_cmds.o -c newgap5_cmds.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap4_compat.o -c gap4_compat.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o init.o -c init.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkAppInit.o -c tkAppInit.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o consensus.o -c consensus.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o read_depth.o -c read_depth.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_range.o -c gap_range.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o depth_track.o -c depth_track.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o template_draw.o -c template_draw.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tag_plot.o -c tag_plot.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o export_contigs.o -c export_contigs.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o export_snps.o -c export_snps.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%ld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /<<PKGBUILDDIR>>/./gap5/hache_table.h:5, from /<<PKGBUILDDIR>>/./gap5/g-struct.h:24, from /<<PKGBUILDDIR>>/./gap5/g.h:1, from tg_struct.h:4, from tg_gio.h:4, from io_utils.h:6, from find_oligo.c:4: In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%ld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o import_gff.o -c import_gff.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o str_finder.o -c str_finder.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o contig_extend.o -c contig_extend.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o find_haplotypes.o -c find_haplotypes.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o interval_tree.o -c interval_tree.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-alloc.o -c g-alloc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o editor_view.o -c editor_view.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o editor_join.o -c editor_join.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o editor_search.o -c editor_search.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:279:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:279:18: note: assuming directive output of 12 bytes 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:279:5: /usr/riscv64-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o editor_oligo.o -c editor_oligo.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o tg_index_common.o -c tg_index_common.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o baf.o -c baf.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o maq.o -c maq.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o maqmap.o -c maqmap.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sam_index.o -c sam_index.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o sam_pileup.o -c sam_pileup.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o ace.o -c ace.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o caf.o -c caf.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o fasta.o -c fasta.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o afg.o -c afg.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -o depad_seq_tree.o -c depad_seq_tree.c riscv64-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<<PKGBUILDDIR>>/./gap5 -I/<<PKGBUILDDIR>>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<<PKGBUILDDIR>>/./tk_utils -I/<<PKGBUILDDIR>>/./seq_utils -I/<<PKGBUILDDIR>>/./primer3/src -I/<<PKGBUILDDIR>> -DSVN_VERSION="" -fPIC -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<<PKGBUILDDIR>>/lib/libgap5.so -L/<<PKGBUILDDIR>>/lib newgap5_cmds.o gap4_compat.o gap_hash.o hash_lib.o qual.o qualIO.o gap_globals.o tagdb.o init.o notedb.o active_tags.o list_proc.o gap-error.o stack_dump.o tk-io-reg.o tkAppInit.o consen.o contig_selector.o cs-object.o find_repeats.o readpair.o check_assembly.o consensus.o read_depth.o gap_range.o template_display.o depth_track.o template_draw.o quality_plot.o tag_plot.o fij.o do_fij.o break_contig.o dis_readings.o export_contigs.o export_snps.o find_oligo.o import_gff.o shuffle_pads.o str_finder.o restriction_enzymes.o gap_canvas_box.o contig_extend.o auto_break.o find_haplotypes.o interval_tree.o g-files.o g-db.o g-struct.o g-error.o g-alloc.o g-io.o g-connect.o g-request.o tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o editor_view.o editor_join.o editor_search.o tkEdNames.o tkEditor.o tman_interface.o tman_display.o primlib.o editor_oligo.o tg_index_common.o baf.o maq.o maqmap.o sam_index.o sam_pileup.o ace.o caf.o fasta.o afg.o depad_seq_tree.o -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: tg_index_common.o: in function `bttmp_file_open': ./gap5/./gap5/tg_index_common.c:105:(.text+0x52e): warning: the use of `tmpnam' is dangerous, better use `mkstemp' riscv64-linux-gnu-gcc -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tg_index.bin tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o tg_index.o -lgap5 -L/usr/lib/riscv64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/riscv64-linux-gnu -ltk8.6 -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc -lm /usr/lib/gcc-cross/riscv64-linux-gnu/14/../../../../riscv64-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<<PKGBUILDDIR>>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<<PKGBUILDDIR>>/gap5' cd scripts && make -f /<<PKGBUILDDIR>>/./scripts/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./scripts SUBDIR=scripts all make[2]: Entering directory '/<<PKGBUILDDIR>>/scripts' /<<PKGBUILDDIR>>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for scripts. make[2]: Leaving directory '/<<PKGBUILDDIR>>/scripts' cd data && make -f /<<PKGBUILDDIR>>/./data/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./data SUBDIR=data all make[2]: Entering directory '/<<PKGBUILDDIR>>/data' /<<PKGBUILDDIR>>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for data. make[2]: Leaving directory '/<<PKGBUILDDIR>>/data' make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_install make -j1 install DESTDIR=/<<BUILDDIR>>/staden-2.0.0\+b11/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<<PKGBUILDDIR>>' mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/doc mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/man cp shlib.conf /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp ./staden.profile /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden make JOB=install make[3]: Entering directory '/<<PKGBUILDDIR>>' cd Misc && make -f /<<PKGBUILDDIR>>/./Misc/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./Misc SUBDIR=Misc install make[4]: Entering directory '/<<PKGBUILDDIR>>/Misc' cp /<<PKGBUILDDIR>>/lib/libmisc.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden make[4]: Leaving directory '/<<PKGBUILDDIR>>/Misc' cd tk_utils && make -f /<<PKGBUILDDIR>>/./tk_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./tk_utils SUBDIR=tk_utils install make[4]: Entering directory '/<<PKGBUILDDIR>>/tk_utils' cp /<<PKGBUILDDIR>>/lib/libtk_utils.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<<PKGBUILDDIR>>/./tk_utils/*.tcl /<<PKGBUILDDIR>>/./tk_utils/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<<PKGBUILDDIR>>/./tk_utils/stash /<<PKGBUILDDIR>>/debian/tmp/usr/bin cp /<<PKGBUILDDIR>>/./tk_utils/2bars_*.bmp /<<PKGBUILDDIR>>/./tk_utils/help_config /<<PKGBUILDDIR>>/./tk_utils/tk_utilsrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/tk_utils' cd text_utils && make -f /<<PKGBUILDDIR>>/./text_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./text_utils SUBDIR=text_utils install make[4]: Entering directory '/<<PKGBUILDDIR>>/text_utils' cp /<<PKGBUILDDIR>>/lib/libtext_utils.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden make[4]: Leaving directory '/<<PKGBUILDDIR>>/text_utils' cd seq_utils && make -f /<<PKGBUILDDIR>>/./seq_utils/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./seq_utils SUBDIR=seq_utils install make[4]: Entering directory '/<<PKGBUILDDIR>>/seq_utils' cp /<<PKGBUILDDIR>>/lib/libseq_utils.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp /<<PKGBUILDDIR>>/./seq_utils/align_lib_nuc_matrix /<<PKGBUILDDIR>>/./seq_utils/nuc_matrix /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/seq_utils' cd mutlib && make -f /<<PKGBUILDDIR>>/./mutlib/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./mutlib SUBDIR=mutlib install make[4]: Entering directory '/<<PKGBUILDDIR>>/mutlib' cp /<<PKGBUILDDIR>>/lib/libmutlib.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden make[4]: Leaving directory '/<<PKGBUILDDIR>>/mutlib' cd abi && make -f /<<PKGBUILDDIR>>/./abi/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./abi SUBDIR=abi install make[4]: Entering directory '/<<PKGBUILDDIR>>/abi' cp getABISampleName getABIcomment getABIdate getABIfield /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/abi' cd alf && make -f /<<PKGBUILDDIR>>/./alf/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./alf SUBDIR=alf install make[4]: Entering directory '/<<PKGBUILDDIR>>/alf' cp alfsplit /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/alf' cd g && make -f /<<PKGBUILDDIR>>/./g/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./g SUBDIR=g install make[4]: Entering directory '/<<PKGBUILDDIR>>/g' cp /<<PKGBUILDDIR>>/lib/libg.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden make[4]: Leaving directory '/<<PKGBUILDDIR>>/g' cd trev && make -f /<<PKGBUILDDIR>>/./trev/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./trev SUBDIR=trev install make[4]: Entering directory '/<<PKGBUILDDIR>>/trev' install trev /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/trev cp /<<PKGBUILDDIR>>/./trev/trev.tcl /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/trev cp /<<PKGBUILDDIR>>/./trev/trevrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/trev' cd primer3 && make -f /<<PKGBUILDDIR>>/./primer3/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./primer3 SUBDIR=primer3 install make[4]: Entering directory '/<<PKGBUILDDIR>>/primer3' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<<PKGBUILDDIR>>/primer3' cd primer3/src && make -f /<<PKGBUILDDIR>>/./primer3/src/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./primer3/src SUBDIR=primer3/src install make[4]: Entering directory '/<<PKGBUILDDIR>>/primer3/src' cp /<<PKGBUILDDIR>>/lib/libprimer3.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden make[4]: Leaving directory '/<<PKGBUILDDIR>>/primer3/src' cd gap4 && make -f /<<PKGBUILDDIR>>/./gap4/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./gap4 SUBDIR=gap4 install make[4]: Entering directory '/<<PKGBUILDDIR>>/gap4' cp copy_db /<<PKGBUILDDIR>>/debian/tmp/usr/bin install gap4 /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/gap cp /<<PKGBUILDDIR>>/./gap4/*.tcl /<<PKGBUILDDIR>>/./gap4/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/gap cp /<<PKGBUILDDIR>>/lib/libgap.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp /<<PKGBUILDDIR>>/./gap4/gaprc /<<PKGBUILDDIR>>/./gap4/gaprc_menu_full /<<PKGBUILDDIR>>/./gap4/gaprc_menu_mito /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./gap4/GTAGDB /<<PKGBUILDDIR>>/./gap4/NOTEDB /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./gap4/cap2rc /<<PKGBUILDDIR>>/./gap4/cap3rc /<<PKGBUILDDIR>>/./gap4/fak2rc /<<PKGBUILDDIR>>/./gap4/phraprc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./gap4/*.bitmap /<<PKGBUILDDIR>>/./gap4/*.gif /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/gap4' cd prefinish && make -f /<<PKGBUILDDIR>>/./prefinish/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./prefinish SUBDIR=prefinish install make[4]: Entering directory '/<<PKGBUILDDIR>>/prefinish' mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/prefinish cp /<<PKGBUILDDIR>>/./prefinish/*.tcl /<<PKGBUILDDIR>>/./prefinish/*.itcl /<<PKGBUILDDIR>>/./prefinish/*.itk /<<PKGBUILDDIR>>/./prefinish/help /<<PKGBUILDDIR>>/./prefinish/args.template /<<PKGBUILDDIR>>/./prefinish/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/prefinish cp /<<PKGBUILDDIR>>/./prefinish/config.prefinish /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/prefinish cp /<<PKGBUILDDIR>>/lib/libprefinish.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden install prefinish /<<PKGBUILDDIR>>/debian/tmp/usr/bin cp /<<PKGBUILDDIR>>/./prefinish/finish_sanger /<<PKGBUILDDIR>>/./prefinish/finish_cDNA /<<PKGBUILDDIR>>/./prefinish/finish_cDNA_ends_only \ /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<<PKGBUILDDIR>>/./prefinish/rules/*.rule /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<<PKGBUILDDIR>>/./prefinish/config.prefinish /<<PKGBUILDDIR>>/./prefinish/prefinishrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/prefinish' cd haplo && make -f /<<PKGBUILDDIR>>/./haplo/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./haplo SUBDIR=haplo install make[4]: Entering directory '/<<PKGBUILDDIR>>/haplo' mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/haplo cp /<<PKGBUILDDIR>>/./haplo/*.tcl /<<PKGBUILDDIR>>/./haplo/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/haplo cp /<<PKGBUILDDIR>>/lib/libhaplo.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp /<<PKGBUILDDIR>>/./haplo/haplorc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/haplo' cd eba && make -f /<<PKGBUILDDIR>>/./eba/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./eba SUBDIR=eba install make[4]: Entering directory '/<<PKGBUILDDIR>>/eba' cp eba /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/eba' cd init_exp && make -f /<<PKGBUILDDIR>>/./init_exp/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./init_exp SUBDIR=init_exp install make[4]: Entering directory '/<<PKGBUILDDIR>>/init_exp' cp init_exp /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/init_exp' cd get_scf_field && make -f /<<PKGBUILDDIR>>/./get_scf_field/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./get_scf_field SUBDIR=get_scf_field install make[4]: Entering directory '/<<PKGBUILDDIR>>/get_scf_field' cp get_scf_field /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/get_scf_field' cd spin && make -f /<<PKGBUILDDIR>>/./spin/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./spin SUBDIR=spin install make[4]: Entering directory '/<<PKGBUILDDIR>>/spin' install spin /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin cp /<<PKGBUILDDIR>>/./spin/*.tcl /<<PKGBUILDDIR>>/./spin/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin cp /<<PKGBUILDDIR>>/lib/libspin.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp /<<PKGBUILDDIR>>/./spin/*.wts /<<PKGBUILDDIR>>/./spin/niprc /<<PKGBUILDDIR>>/./spin/siprc /<<PKGBUILDDIR>>/./spin/spinrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/spin' cd vector_clip && make -f /<<PKGBUILDDIR>>/./vector_clip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./vector_clip SUBDIR=vector_clip install make[4]: Entering directory '/<<PKGBUILDDIR>>/vector_clip' cp vector_clip /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/vector_clip' cd tracediff && make -f /<<PKGBUILDDIR>>/./tracediff/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./tracediff SUBDIR=tracediff install make[4]: Entering directory '/<<PKGBUILDDIR>>/tracediff' cp tracediff /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/tracediff' cd screen_seq && make -f /<<PKGBUILDDIR>>/./screen_seq/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./screen_seq SUBDIR=screen_seq install make[4]: Entering directory '/<<PKGBUILDDIR>>/screen_seq' cp screen_seq /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/screen_seq' cd qclip && make -f /<<PKGBUILDDIR>>/./qclip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./qclip SUBDIR=qclip install make[4]: Entering directory '/<<PKGBUILDDIR>>/qclip' cp qclip /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/qclip' cd polyA_clip && make -f /<<PKGBUILDDIR>>/./polyA_clip/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./polyA_clip SUBDIR=polyA_clip install make[4]: Entering directory '/<<PKGBUILDDIR>>/polyA_clip' cp polyA_clip /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/polyA_clip' cd stops && make -f /<<PKGBUILDDIR>>/./stops/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./stops SUBDIR=stops install make[4]: Entering directory '/<<PKGBUILDDIR>>/stops' cp stops /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/stops' cd pregap4 && make -f /<<PKGBUILDDIR>>/./pregap4/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./pregap4 SUBDIR=pregap4 install make[4]: Entering directory '/<<PKGBUILDDIR>>/pregap4' /<<PKGBUILDDIR>>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' install pregap4 /<<PKGBUILDDIR>>/debian/tmp/usr/bin/pregap4 mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4 cp /<<PKGBUILDDIR>>/./pregap4/*.tcl /<<PKGBUILDDIR>>/./pregap4/widget_licence /<<PKGBUILDDIR>>/./pregap4/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4 mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/modules mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/templates mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<<PKGBUILDDIR>>/./pregap4/modules/*.p4m /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/modules cp /<<PKGBUILDDIR>>/./pregap4/templates/*.p4t /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/templates cp: cannot stat '/<<PKGBUILDDIR>>/./pregap4/templates/*.p4t': No such file or directory make[4]: [/<<PKGBUILDDIR>>/./pregap4/Makefile:42: install] Error 1 (ignored) cp /<<PKGBUILDDIR>>/./pregap4/naming_schemes/*.p4t /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<<PKGBUILDDIR>>/./pregap4/pregap4rc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/pregap4' cd make_weights && make -f /<<PKGBUILDDIR>>/./make_weights/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./make_weights SUBDIR=make_weights install make[4]: Entering directory '/<<PKGBUILDDIR>>/make_weights' cp make_weights /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/make_weights' cd find_renz && make -f /<<PKGBUILDDIR>>/./find_renz/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./find_renz SUBDIR=find_renz install make[4]: Entering directory '/<<PKGBUILDDIR>>/find_renz' cp find_renz /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/find_renz' cd spin_emboss && make -f /<<PKGBUILDDIR>>/./spin_emboss/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./spin_emboss SUBDIR=spin_emboss install make[4]: Entering directory '/<<PKGBUILDDIR>>/spin_emboss' /<<PKGBUILDDIR>>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<<PKGBUILDDIR>>/./spin_emboss/*.tcl /<<PKGBUILDDIR>>/./spin_emboss/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<<PKGBUILDDIR>>/./spin_emboss/create_emboss_files /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp /<<PKGBUILDDIR>>/./spin_emboss/acdtcl/* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp: cannot stat '/<<PKGBUILDDIR>>/./spin_emboss/acdtcl/*': No such file or directory make[4]: [/<<PKGBUILDDIR>>/./spin_emboss/Makefile:30: install] Error 1 (ignored) cp /<<PKGBUILDDIR>>/./spin_emboss/emboss_menu /<<PKGBUILDDIR>>/./spin_emboss/spin_embossrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/spin_emboss' cd copy_reads && make -f /<<PKGBUILDDIR>>/./copy_reads/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./copy_reads SUBDIR=copy_reads install make[4]: Entering directory '/<<PKGBUILDDIR>>/copy_reads' mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/copy_reads install copy_reads /<<PKGBUILDDIR>>/debian/tmp/usr/bin cp /<<PKGBUILDDIR>>/./copy_reads/copy_reads.tcl /<<PKGBUILDDIR>>/./copy_reads/copy_reads_main.tcl /<<PKGBUILDDIR>>/./copy_reads/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/copy_reads cp /<<PKGBUILDDIR>>/lib/libcopy_reads.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp /<<PKGBUILDDIR>>/./copy_reads/copy_readsrc /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/copy_reads' cd hetins && make -f /<<PKGBUILDDIR>>/./hetins/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./hetins SUBDIR=hetins install make[4]: Entering directory '/<<PKGBUILDDIR>>/hetins' cp hetins /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/hetins' cd mutscan && make -f /<<PKGBUILDDIR>>/./mutscan/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./mutscan SUBDIR=mutscan install make[4]: Entering directory '/<<PKGBUILDDIR>>/mutscan' cp mutscan /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/mutscan' cd convert && make -f /<<PKGBUILDDIR>>/./convert/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./convert SUBDIR=convert install make[4]: Entering directory '/<<PKGBUILDDIR>>/convert' cp staden_convert /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/convert' cd gap5 && make -f /<<PKGBUILDDIR>>/./gap5/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./gap5 SUBDIR=gap5 install make[4]: Entering directory '/<<PKGBUILDDIR>>/gap5' install gap5 /<<PKGBUILDDIR>>/debian/tmp/usr/bin mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/gap5 cp /<<PKGBUILDDIR>>/./gap5/*.tcl /<<PKGBUILDDIR>>/./gap5/tclIndex /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/gap5 cp /<<PKGBUILDDIR>>/./gap5/../gap4/acd2tag.tcl /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/tcl/gap5 cp /<<PKGBUILDDIR>>/./gap5/gap5rc /<<PKGBUILDDIR>>/./gap5/gap5rc_menu_full /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/lib/libgap5.so /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/staden cp tg_index.bin /<<PKGBUILDDIR>>/debian/tmp/usr/bin install tg_index /<<PKGBUILDDIR>>/debian/tmp/usr/bin install gap5_cmd /<<PKGBUILDDIR>>/debian/tmp/usr/bin make[4]: Leaving directory '/<<PKGBUILDDIR>>/gap5' cd scripts && make -f /<<PKGBUILDDIR>>/./scripts/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./scripts SUBDIR=scripts install make[4]: Entering directory '/<<PKGBUILDDIR>>/scripts' /<<PKGBUILDDIR>>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' cp /<<PKGBUILDDIR>>/./scripts/assemble4 /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts cp /<<PKGBUILDDIR>>/./scripts/fasta-split /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts cp /<<PKGBUILDDIR>>/./scripts/fasta2exp /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts cp /<<PKGBUILDDIR>>/./scripts/splitseq_da /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts cp /<<PKGBUILDDIR>>/./scripts/staden_help /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/scripts make[4]: Leaving directory '/<<PKGBUILDDIR>>/scripts' cd data && make -f /<<PKGBUILDDIR>>/./data/Makefile -j1 BUILD=/<<PKGBUILDDIR>> SRC=/<<PKGBUILDDIR>>/./data SUBDIR=data install make[4]: Entering directory '/<<PKGBUILDDIR>>/data' /<<PKGBUILDDIR>>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<<PKGBUILDDIR>>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/alus cp /<<PKGBUILDDIR>>/./data/alus/* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/alus mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/blast_data cp /<<PKGBUILDDIR>>/./data/blast_data/* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/blast_data mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/gcodes cp /<<PKGBUILDDIR>>/./data/gcodes/* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/gcodes mkdir /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/vectors cp /<<PKGBUILDDIR>>/./data/vectors/* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc/vectors cp /<<PKGBUILDDIR>>/./data/RENZYM.* /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./data/renzyme_bairoch /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./data/m13mp18_primers /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./data/vector_primer /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc cp /<<PKGBUILDDIR>>/./data/pam250 /<<PKGBUILDDIR>>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<<PKGBUILDDIR>>/data' make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: Leaving directory '/<<PKGBUILDDIR>>' # Remove file causing lintian errors that is targeting at windows find debian -name help_windows.tcl -delete # Remove some empty directories find debian -type d -empty -name acdtcl -delete find debian -type d -empty -name templates -delete # Build system is not prepared for multi-arch mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu/* /<<PKGBUILDDIR>>/debian/tmp/usr/lib rmdir /<<PKGBUILDDIR>>/debian/tmp/usr/lib/riscv64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_install -a dh_installdocs -a dh_installdocs: warning: Could not parse doc-base for doc-base Document id; skipping dh_installchangelogs -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_installman # due to a file name conflict spin.1 is moved out of the way #826684 mkdir -p debian/staden/usr/lib/debian-med/share/man/man1/ mv debian/staden/usr/share/man/man1/spin.1 debian/staden/usr/lib/debian-med/share/man/man1/ gzip -9 debian/staden/usr/lib/debian-med/share/man/man1/spin.1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_fixperms # scripts should be executable chmod a+x debian/*/usr/share/staden/tcl/gap5/contig_graph.tcl chmod a+x debian/*/usr/share/staden/tcl/gap5/gap5_cmd.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/add_stops.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/finish_sanger.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_ext.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_galeon.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_int.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_netscape.tcl make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'staden' in '../staden_2.0.0+b11-5_riscv64.deb'. dpkg-deb: building package 'staden-dbgsym' in '../staden-dbgsym_2.0.0+b11-5_riscv64.deb'. dpkg-genbuildinfo --build=any -O../staden_2.0.0+b11-5_riscv64.buildinfo dpkg-genchanges --build=any -O../staden_2.0.0+b11-5_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-03-24T09:39:00Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<<PKGBUILDDIR>>/ --------------------------------------------- I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden_2.0.0+b11-5_riscv64.changes: ----------------------------------- Format: 1.8 Date: Wed, 13 Mar 2024 15:32:32 +0100 Source: staden Binary: staden staden-dbgsym Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 2.0.0+b11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <crusoe@debian.org> Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools Closes: 1066508 Changes: staden (2.0.0+b11-5) unstable; urgency=medium . * Team upload. * Mark staden-commen as Multi-Arch: foreign * Standards-Version: 4.5.0 * Correctly detect 64bit host architectures * d/patches/use_mkstemp_instead_of_tmpnam.patch: add missing stdlib include. Closes: #1066508 * d/control: libncurses-dev replaced libncurses5-dev. * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Update lintian override info format in d/staden-common.lintian-overrides on line 2. * watch file standard 4 (routine-update) * d/upstream/metadata: add links to Sourceforge issue tracker, VCS Checksums-Sha1: 810a289191dbd5483dfd73265639d76f661532e5 4265752 staden-dbgsym_2.0.0+b11-5_riscv64.deb 95a337c84bcac6aec82ba5a6f79f06213cc653ae 8396 staden_2.0.0+b11-5_riscv64.buildinfo d1b0e9d6bd47490d9f4b7d29a69a23647fff9d24 1654860 staden_2.0.0+b11-5_riscv64.deb Checksums-Sha256: 05defcc5b8ebb3919d92c2bfe4da607d5c984404ac49b1799b0df4339b0f865b 4265752 staden-dbgsym_2.0.0+b11-5_riscv64.deb 3b41b42a7076bc6c1498fd11203ffd9e09dc9dbf2ea6f71fc94b30377159af72 8396 staden_2.0.0+b11-5_riscv64.buildinfo 7d4941446d3b202b67632fcefa2f5cd513a1f8c177c8f4e93360565bbf638c1f 1654860 staden_2.0.0+b11-5_riscv64.deb Files: c2bfe535558236e2d81e1572f0aca9d8 4265752 debug optional staden-dbgsym_2.0.0+b11-5_riscv64.deb 463f034e857f4b78790ab81d15896769 8396 science optional staden_2.0.0+b11-5_riscv64.buildinfo 0b7dbc2f8a0a201287532ff6b71286c7 1654860 science optional staden_2.0.0+b11-5_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: staden Binary: staden staden-dbgsym Architecture: riscv64 Version: 2.0.0+b11-5 Checksums-Md5: c2bfe535558236e2d81e1572f0aca9d8 4265752 staden-dbgsym_2.0.0+b11-5_riscv64.deb 0b7dbc2f8a0a201287532ff6b71286c7 1654860 staden_2.0.0+b11-5_riscv64.deb Checksums-Sha1: 810a289191dbd5483dfd73265639d76f661532e5 4265752 staden-dbgsym_2.0.0+b11-5_riscv64.deb d1b0e9d6bd47490d9f4b7d29a69a23647fff9d24 1654860 staden_2.0.0+b11-5_riscv64.deb Checksums-Sha256: 05defcc5b8ebb3919d92c2bfe4da607d5c984404ac49b1799b0df4339b0f865b 4265752 staden-dbgsym_2.0.0+b11-5_riscv64.deb 7d4941446d3b202b67632fcefa2f5cd513a1f8c177c8f4e93360565bbf638c1f 1654860 staden_2.0.0+b11-5_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 24 Mar 2025 09:39:00 +0000 Build-Path: /<<PKGBUILDDIR>> Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-1.1+b1), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1+b1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-3), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-3), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), itcl3 (= 3.4.4-3), itcl3-dev (= 3.4.4-3), itk3 (= 3.4.2-5), itk3-dev (= 3.4.2-5), iwidgets4 (= 4.1.1-4), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-6), libc-dev-bin (= 2.41-6), libc6 (= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-3), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.13.0~rc2-2), libcurl4-gnutls-dev (= 8.13.0~rc2-2), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.0-1), libexpat1-dev (= 2.7.0-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig-dev (= 2.15.0-2.2), libfontconfig1 (= 2.15.0-2.2), libfontconfig1-dev (= 2.15.0-2.2), libfreetype-dev (= 2.13.3+dfsg-1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.1-1), libhtscodecs-dev (= 1.6.1-2), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 14.2.0-19), libicu76 (= 76.1-3), libidn2-0 (= 2.3.8-2), libidn2-dev (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.9+dfsg-2), libldap2 (= 2.6.9+dfsg-2), liblsan0 (= 14.2.0-19), liblzma-dev (= 5.6.4-1), liblzma5 (= 5.6.4-1), libmagic-mgc (= 1:5.46-3), libmagic1t64 (= 1:5.46-3), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncurses-dev (= 6.5+20250216-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.47-1.1), libpng16-16t64 (= 1.6.47-1.1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 14.2.0-19), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.40.4-5), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstaden-read-dev (= 1.15.0-1.1+b2), libstaden-read14t64 (= 1.15.0-1.1+b2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.4-3), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtcl8.6 (= 8.6.16+dfsg-1), libtinfo6 (= 6.5+20250216-2), libtk8.6 (= 8.6.16-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.4-3), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-2), libuuid1 (= 2.40.4-5), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxft-dev (= 2.3.6-1+b4), libxft2 (= 2.3.6-1+b4), libxml2 (= 2.12.7+dfsg+really2.9.14-0.3+b1), libxrender-dev (= 1:0.9.10-1.1+b4), libxrender1 (= 1:0.9.10-1.1+b4), libxss-dev (= 1:1.2.3-1+b3), libxss1 (= 1:1.2.3-1+b3), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.20-1), m4 (= 1.4.19-7), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.4.1-1), patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tcl (= 8.6.16), tcl-dev (= 8.6.16), tcl8.6 (= 8.6.16+dfsg-1), tcl8.6-dev (= 8.6.16+dfsg-1), tk (= 8.6.16), tk-dev (= 8.6.16), tk8.6 (= 8.6.16-1), tk8.6-dev (= 8.6.16-1), tklib (= 0.9-1), tzdata (= 2025b-1), util-linux (= 2.40.4-5), uuid-dev (= 2.40.4-5), x11-common (= 1:7.7+24), x11proto-core-dev (= 2024.1-1), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.4-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1710340352" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ staden-dbgsym_2.0.0+b11-5_riscv64.deb ------------------------------------- new Debian package, version 2.0. size 4265752 bytes: control archive=2132 bytes. 1730 bytes, 12 lines control 3688 bytes, 35 lines md5sums Package: staden-dbgsym Source: staden Version: 2.0.0+b11-5 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Installed-Size: 5281 Depends: staden (= 2.0.0+b11-5) Section: debug Priority: optional Description: debug symbols for staden Build-Ids: 044c9f7c7c799deeb840042adfa174be11d2119b 0cc4215a9727bd94254b7435e64add3602c24c58 1ade1fe3cd49642cf2d08bbd0469d1272931f1ef 1d795c453400db32ba2347ab624523b1c29a7562 1d813969ba1999bad858118bbd9689df1f6988be 2ab1c8268f5185aa497c81358d6952ae83ee73ac 3283dbb868e8f2250c20b0c1c56e2dd179faa5e9 341bc326e07f6687b41fe2a273380516cf30e628 46cd98038c59258cbcc731ba3154bfd946c4dc47 4f14f46efde39d145b4d956cbfee341676939d64 4f48e8e1a71172f60efde26033bc2517cc3dce70 5ea373a4e41156029a8244ee0637251945cfc728 644bd52ee2c37b3004eb2dddbf6d3b7911941e59 65aa770f056e31afaf4bd22e8f4efb697d3f0a5e 6c41fdb7b6dc4a229283662c91d423d7b79e356d 7acb819b2f8530c297f623aa0e11a4432df136c5 7d15c6690a0dca5d8b810ab846c784a9dadf4190 89179f47cd335e80e22cb8d02c78c7791f8e5fca 93d4cf66b29f8d5b83ae9552f396d22223175a8e 9665da110abd5c23cc493ecad16da711ebb8ac55 a1c0b70a3439a0bf45f5f1611a720f359f4a3a8b b245a8b7d842d69ddcfd89f1c19186892937f354 c50d48f907cfc11040229e27cf95a654a48930f1 c856c6f1b07c77eff207594c7a4fee72279626eb ca228d477e3f10a4b20725852db52da69ac04607 d023a1ab8ae8028a1f706f52b189a4e180719420 dc8ab24c12466f254ae8418b10d1a2ae17608ae2 dd56c15a6a3fa8028a319632708d677cddc193af ddd509e31fe0e8781cf64c2d3a7b9917f59dd588 e3f42b050cbe3f1d003c1de1c340c4d73bbdd6e5 e967d2c94b38da59847764424fc8a3ce9f2bf7c5 eb5fc093ae9eee4c2dd148d4c328add8c4b7b68f eb8e8dbcc51077aec48b3fdf775ddaad5aabc475 f99b6feaaa63e2024cc8ea4ca15550a5514f3755 drwxr-xr-x root/root 0 2024-03-13 14:32 ./ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/04/ -rw-r--r-- root/root 42920 2024-03-13 14:32 ./usr/lib/debug/.build-id/04/4c9f7c7c799deeb840042adfa174be11d2119b.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/0c/ -rw-r--r-- root/root 26376 2024-03-13 14:32 ./usr/lib/debug/.build-id/0c/c4215a9727bd94254b7435e64add3602c24c58.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/1a/ -rw-r--r-- root/root 662608 2024-03-13 14:32 ./usr/lib/debug/.build-id/1a/de1fe3cd49642cf2d08bbd0469d1272931f1ef.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 14160 2024-03-13 14:32 ./usr/lib/debug/.build-id/1d/795c453400db32ba2347ab624523b1c29a7562.debug -rw-r--r-- root/root 33056 2024-03-13 14:32 ./usr/lib/debug/.build-id/1d/813969ba1999bad858118bbd9689df1f6988be.debug drwxr-xr-x root/root 0 2024-03-13 14:32 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control archive=3136 bytes. 2510 bytes, 47 lines control 3948 bytes, 62 lines md5sums Package: staden Version: 2.0.0+b11-5 Architecture: riscv64 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Installed-Size: 3972 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libpng16-16t64 (>= 1.6.46), libstaden-read14t64 (>= 1.14.12), libstdc++6 (>= 5), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, zlib1g (>= 1:1.1.4), staden-common (= 2.0.0+b11-5), staden-io-lib-utils, tklib Recommends: med-config Section: science Priority: optional Homepage: https://sourceforge.net/projects/staden/ Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. drwxr-xr-x root/root 0 2024-03-13 14:32 ./ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/bin/ -rwxr-xr-x root/root 321 2020-02-19 15:32 ./usr/bin/gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/gap5 -> gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/pregap4 -> gap4 -rwxr-xr-x root/root 642 2020-02-19 15:32 ./usr/bin/staden lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/trev -> gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/spin -> ../../../bin/gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 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-rw-r--r-- root/root 961 2024-03-13 14:32 ./usr/share/man/man1/gap5.1.gz -rw-r--r-- root/root 682 2024-03-13 14:32 ./usr/share/man/man1/pregap4.1.gz -rw-r--r-- root/root 826 2024-03-13 14:32 ./usr/share/man/man1/trev.1.gz drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/staden/ -rw-r--r-- root/root 4107 2020-02-19 15:32 ./usr/share/staden/icon4bl.svg lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B] Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1464 B] Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1547 B] Fetched 3626 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:riscv64 shared-mime-info t1utils ucf unzip 0 upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After this operation, 86.8 MB of additional disk space will be used. Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0050 [42.7 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:23 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.13.0~rc2-2 [374 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.4-1 [225 kB] Get:40 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.4-1 [523 kB] Get:41 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:46 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.2.46-6 [122 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:48 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.2.46-6 [533 kB] Get:49 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.17.0-1 [3055 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.41 [68.3 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:60 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:65 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.67-1 [217 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:69 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:79 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b4 [32.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:99 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:108 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:115 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:116 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:119 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.026-1 [11.7 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:127 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:128 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:129 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:130 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB] Get:131 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:134 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:139 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:152 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:156 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b3 [20.4 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB] Get:167 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB] Get:168 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:169 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:170 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:171 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:172 http://localhost:3142/debian unstable/main amd64 lintian all 2.121.2 [1060 kB] Preconfiguring packages ... Fetched 22.8 MB in 0s (131 MB/s) Selecting previously unselected package netbase. (Reading database ... 23485 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.4.1-1_amd64.deb ... 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Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../017-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../018-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../019-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../020-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../021-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../022-libgssapi-krb5-2_1.21.3-5_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package gpgconf. Preparing to unpack .../044-gpgconf_2.2.46-6_amd64.deb ... Unpacking gpgconf (2.2.46-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../045-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package gpg. 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Unpacking sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.41) ... Setting up liblz1:amd64 (1.15-3) ... Setting up libberkeleydb-perl:amd64 (0.66-1) ... Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libgpg-error0:amd64 (1.51-4) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.026-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... 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Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up procps (2:4.0.4-7) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libstemmer0d:amd64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.4.1-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-6) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.0-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0050) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-6) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-6) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.22-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.67-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.016-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:amd64 (8.13.0~rc2-2) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.0.4-1) ... Setting up appstream (1.0.4-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.121.2) ... Setting up sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<<BUILDDIR>> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 148 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 23 Job: staden_2.0.0+b11-5 Lintian: pass Machine Architecture: amd64 Package: staden Package-Time: 183 Source-Version: 2.0.0+b11-5 Space: n/a Status: successful Version: 2.0.0+b11-5 -------------------------------------------------------------------------------- Finished at 2025-03-24T09:39:00Z Build needed 00:03:03, no disk space