sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | staden 2.0.0+b11-5 (s390x) Tue, 18 Mar 2025 09:49:24 +0000 | +==============================================================================+ Package: staden Version: 2.0.0+b11-5 Source Version: 2.0.0+b11-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-55d5be26-3348-4dc3-bc53-a8436a71706a' with '<>' I: NOTICE: Log filtering will replace 'build/staden-p61DfY/resolver-xMt1w8' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-03-18-0209.56-F-2025-03-18-0209.56.pdiff [1697 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-03-18-0805.44-F-2025-03-18-0209.56.pdiff [27.0 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-03-18-0209.56-F-2025-03-18-0209.56.pdiff [1697 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-18-0805.44-F-2025-03-18-0209.56.pdiff [25.4 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-03-18-0805.44-F-2025-03-18-0209.56.pdiff [27.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-18-0805.44-F-2025-03-18-0209.56.pdiff [25.4 kB] Get:8 http://localhost:3142/debian unstable/main s390x Packages [9683 kB] Fetched 10.1 MB in 3s (3617 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://localhost:3142/debian unstable/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 0s (76.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/staden-p61DfY/staden-2.0.0+b11' with '<>' I: NOTICE: Log filtering will replace 'build/staden-p61DfY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [876 B] Get:5 copy:/<>/apt_archive ./ Packages [919 B] Fetched 2404 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:s390x itcl3-dev:s390x itk3 itk3:s390x itk3-dev:s390x iwidgets4 krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1 libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcrypt-dev:s390x libcrypt1:s390x libcurl3t64-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libelf1t64 libevent-2.1-7t64:s390x libexpat1 libexpat1:s390x libexpat1-dev:s390x libfakeroot libffi8:s390x libfile-stripnondeterminism-perl libfontconfig-dev:s390x libfontconfig1 libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype-dev:s390x libfreetype6 libfreetype6:s390x libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls-openssl27t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libicu76 libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libncurses-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf3 libpng-dev:s390x libpng16-16t64 libpng16-16t64:s390x libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstaden-read-dev:s390x libstaden-read14t64:s390x libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtcl8.6 libtcl8.6:s390x libtinfo6:s390x libtk8.6 libtk8.6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring5 libunistring5:s390x libuuid1:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev:s390x libxau-dev:s390x libxau6 libxau6:s390x libxcb1 libxcb1:s390x libxcb1-dev:s390x libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxft-dev:s390x libxft2 libxft2:s390x libxml2 libxrender-dev:s390x libxrender1 libxrender1:s390x libxss-dev:s390x libxss1 libxss1:s390x libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sensible-utils tcl tcl-dev:s390x tcl8.6 tcl8.6-dev:s390x tk tk-dev:s390x tk8.6 tk8.6-dev:s390x tklib uuid-dev:s390x x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:s390x gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff itcl3-doc itcl3-doc:s390x itk3-doc itk3-doc:s390x iwidgets4-doc krb5-doc:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x libcurl4-doc:s390x libidn-dev:s390x freetype2-doc:s390x gmp-doc:s390x libgmp10-doc:s390x libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x krb5-user:s390x liblzma-doc:s390x ncurses-doc:s390x libnghttp2-doc:s390x p11-kit-doc:s390x libssl-doc:s390x libstdc++-14-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:s390x libx11-doc:s390x libxcb-doc:s390x libxext-doc:s390x m4-doc apparmor less www-browser libmail-box-perl tcl-doc:s390x tcl-tclreadline tcl8.6-doc:s390x tk-doc:s390x tk8.6-doc:s390x Recommended packages: curl | wget | lynx bzip2-doc:s390x ca-certificates:s390x libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x libgpm2:s390x libpng-tools:s390x publicsuffix:s390x libsasl2-modules:s390x libtasn1-doc:s390x libltdl-dev libmail-sendmail-perl tcllib The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian itcl3 itcl3:s390x itcl3-dev:s390x itk3 itk3:s390x itk3-dev:s390x iwidgets4 krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1 libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcrypt-dev:s390x libcrypt1:s390x libcurl3t64-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libelf1t64 libevent-2.1-7t64:s390x libexpat1 libexpat1:s390x libexpat1-dev:s390x libfakeroot libffi8:s390x libfile-stripnondeterminism-perl libfontconfig-dev:s390x libfontconfig1 libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype-dev:s390x libfreetype6 libfreetype6:s390x libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls-openssl27t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libicu76 libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libncurses-dev:s390x libncurses6:s390x libncursesw6:s390x libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf3 libpng-dev:s390x libpng16-16t64 libpng16-16t64:s390x libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstaden-read-dev:s390x libstaden-read14t64:s390x libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtcl8.6 libtcl8.6:s390x libtinfo6:s390x libtk8.6 libtk8.6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring5 libunistring5:s390x libuuid1:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev:s390x libxau-dev:s390x libxau6 libxau6:s390x libxcb1 libxcb1:s390x libxcb1-dev:s390x libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxft-dev:s390x libxft2 libxft2:s390x libxml2 libxrender-dev:s390x libxrender1 libxrender1:s390x libxss-dev:s390x libxss1 libxss1:s390x libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils tcl tcl-dev:s390x tcl8.6 tcl8.6-dev:s390x tk tk-dev:s390x tk8.6 tk8.6-dev:s390x tklib uuid-dev:s390x x11-common x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 215 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 478 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [992 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-2 [337 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-2 [109 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-2 [43.5 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.44-3 [1309 kB] Get:18 http://localhost:3142/debian unstable/main s390x gcc-14-base s390x 14.2.0-19 [49.4 kB] Get:19 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 14.2.0-19 [31.9 kB] Get:20 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.41-6 [2449 kB] Get:21 http://localhost:3142/debian unstable/main s390x libcrypt1 s390x 1:4.4.38-1 [94.0 kB] Get:22 http://localhost:3142/debian unstable/main s390x libcrypt-dev s390x 1:4.4.38-1 [123 kB] Get:23 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.41-6 [1557 kB] Get:24 http://localhost:3142/debian unstable/main s390x libcom-err2 s390x 1.47.2-1+b1 [24.1 kB] Get:25 http://localhost:3142/debian unstable/main s390x comerr-dev s390x 2.1-1.47.2-1+b1 [55.8 kB] Get:26 http://localhost:3142/debian unstable/main amd64 gcc-14-s390x-linux-gnu-base amd64 14.2.0-12cross1 [48.5 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-14-s390x-linux-gnu amd64 14.2.0-12cross1 [9413 kB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:29 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-12cross1 [43.7 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.41-6cross2 [1168 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 14.2.0-12cross1 [31.9 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 14.2.0-12cross1 [129 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 14.2.0-12cross1 [26.4 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 14.2.0-12cross1 [8296 B] Get:35 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 14.2.0-12cross1 [2564 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 14.2.0-12cross1 [713 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 14.2.0-12cross1 [1056 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-s390x-cross all 14.2.0-12cross1 [877 kB] Get:39 http://localhost:3142/debian unstable/main amd64 gcc-14-s390x-linux-gnu amd64 14.2.0-12cross1 [17.8 MB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:14.2.0-1 [1448 B] Get:41 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 6.12.17-1cross2 [2364 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.41-6cross2 [1554 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-s390x-cross all 14.2.0-12cross1 [2392 kB] Get:44 http://localhost:3142/debian unstable/main amd64 g++-14-s390x-linux-gnu amd64 14.2.0-12cross1 [10.4 MB] Get:45 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:46 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:47 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:49 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:52 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:53 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:54 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:58 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:59 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:60 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:61 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1-1 [29.5 kB] Get:63 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1-1 [75.7 kB] Get:64 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:65 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:66 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.1 [318 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:68 http://localhost:3142/debian unstable/main amd64 itcl3 amd64 3.4.4-3 [48.2 kB] Get:69 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.1-1+b1 [86.9 kB] Get:70 http://localhost:3142/debian unstable/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1043 kB] Get:71 http://localhost:3142/debian unstable/main s390x itcl3 s390x 3.4.4-3 [49.1 kB] Get:72 http://localhost:3142/debian unstable/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1+b1 [918 kB] Get:73 http://localhost:3142/debian unstable/main amd64 tcl8.6 amd64 8.6.16+dfsg-1 [121 kB] Get:74 http://localhost:3142/debian unstable/main s390x tcl8.6-dev s390x 8.6.16+dfsg-1 [1048 kB] Get:75 http://localhost:3142/debian unstable/main amd64 tcl amd64 8.6.16 [4096 B] Get:76 http://localhost:3142/debian unstable/main s390x tcl-dev s390x 8.6.16 [6628 B] Get:77 http://localhost:3142/debian unstable/main s390x itcl3-dev s390x 3.4.4-3 [15.5 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.1 [391 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:91 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:94 http://localhost:3142/debian unstable/main amd64 itk3 amd64 3.4.2-5 [26.4 kB] Get:95 http://localhost:3142/debian unstable/main s390x libexpat1 s390x 2.7.0-1 [106 kB] Get:96 http://localhost:3142/debian unstable/main s390x libbrotli1 s390x 1.1.0-2+b7 [340 kB] Get:97 http://localhost:3142/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-6 [42.3 kB] Get:98 http://localhost:3142/debian unstable/main s390x libpng16-16t64 s390x 1.6.47-1.1 [283 kB] Get:99 http://localhost:3142/debian unstable/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [459 kB] Get:100 http://localhost:3142/debian unstable/main s390x libfontconfig1 s390x 2.15.0-2.1 [390 kB] Get:101 http://localhost:3142/debian unstable/main s390x libxau6 s390x 1:1.0.11-1 [20.2 kB] Get:102 http://localhost:3142/debian unstable/main s390x libxdmcp6 s390x 1:1.1.5-1 [28.1 kB] Get:103 http://localhost:3142/debian unstable/main s390x libxcb1 s390x 1.17.0-2+b1 [144 kB] Get:104 http://localhost:3142/debian unstable/main s390x libx11-6 s390x 2:1.8.10-2 [814 kB] Get:105 http://localhost:3142/debian unstable/main s390x libxrender1 s390x 1:0.9.10-1.1+b4 [28.6 kB] Get:106 http://localhost:3142/debian unstable/main s390x libxft2 s390x 2.3.6-1+b4 [56.7 kB] Get:107 http://localhost:3142/debian unstable/main s390x libxext6 s390x 2:1.3.4-1+b3 [50.5 kB] Get:108 http://localhost:3142/debian unstable/main s390x libxss1 s390x 1:1.2.3-1+b3 [17.0 kB] Get:109 http://localhost:3142/debian unstable/main s390x libtk8.6 s390x 8.6.16-1 [793 kB] Get:110 http://localhost:3142/debian unstable/main s390x itk3 s390x 3.4.2-5 [27.1 kB] Get:111 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:112 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:113 http://localhost:3142/debian unstable/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get:114 http://localhost:3142/debian unstable/main s390x libxau-dev s390x 1:1.0.11-1 [23.4 kB] Get:115 http://localhost:3142/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.5-1 [44.8 kB] Get:116 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:117 http://localhost:3142/debian unstable/main s390x libxcb1-dev s390x 1.17.0-2+b1 [181 kB] Get:118 http://localhost:3142/debian unstable/main s390x libx11-dev s390x 2:1.8.10-2 [887 kB] Get:119 http://localhost:3142/debian unstable/main s390x libxext-dev s390x 2:1.3.4-1+b3 [105 kB] Get:120 http://localhost:3142/debian unstable/main s390x libxss-dev s390x 1:1.2.3-1+b3 [22.8 kB] Get:121 http://localhost:3142/debian unstable/main s390x libexpat1-dev s390x 2.7.0-1 [161 kB] Get:122 http://localhost:3142/debian unstable/main s390x libbrotli-dev s390x 1.1.0-2+b7 [344 kB] Get:123 http://localhost:3142/debian unstable/main s390x libbz2-dev s390x 1.0.8-6 [35.9 kB] Get:124 http://localhost:3142/debian unstable/main s390x libpng-dev s390x 1.6.47-1.1 [368 kB] Get:125 http://localhost:3142/debian unstable/main s390x libfreetype-dev s390x 2.13.3+dfsg-1 [630 kB] Get:126 http://localhost:3142/debian unstable/main s390x libuuid1 s390x 2.40.4-5 [36.6 kB] Get:127 http://localhost:3142/debian unstable/main s390x uuid-dev s390x 2.40.4-5 [47.7 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:129 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:130 http://localhost:3142/debian unstable/main s390x pkgconf s390x 1.8.1-4 [26.2 kB] Get:131 http://localhost:3142/debian unstable/main s390x libfontconfig-dev s390x 2.15.0-2.1 [414 kB] Get:132 http://localhost:3142/debian unstable/main s390x libfontconfig1-dev s390x 2.15.0-2.1 [269 kB] Get:133 http://localhost:3142/debian unstable/main s390x libxrender-dev s390x 1:0.9.10-1.1+b4 [36.7 kB] Get:134 http://localhost:3142/debian unstable/main s390x libxft-dev s390x 2.3.6-1+b4 [75.5 kB] Get:135 http://localhost:3142/debian unstable/main amd64 tk8.6 amd64 8.6.16-1 [69.6 kB] Get:136 http://localhost:3142/debian unstable/main s390x tk8.6-dev s390x 8.6.16-1 [799 kB] Get:137 http://localhost:3142/debian unstable/main amd64 tk amd64 8.6.16 [4136 B] Get:138 http://localhost:3142/debian unstable/main s390x tk-dev s390x 8.6.16 [3964 B] Get:139 http://localhost:3142/debian unstable/main s390x itk3-dev s390x 3.4.2-5 [5508 B] Get:140 http://localhost:3142/debian unstable/main amd64 iwidgets4 all 4.1.1-3 [194 kB] Get:141 http://localhost:3142/debian unstable/main s390x libkrb5support0 s390x 1.21.3-5 [33.1 kB] Get:142 http://localhost:3142/debian unstable/main s390x libk5crypto3 s390x 1.21.3-5 [83.6 kB] Get:143 http://localhost:3142/debian unstable/main s390x libkeyutils1 s390x 1.6.3-4 [9112 B] Get:144 http://localhost:3142/debian unstable/main s390x libzstd1 s390x 1.5.7+dfsg-1 [324 kB] Get:145 http://localhost:3142/debian unstable/main s390x libssl3t64 s390x 3.4.1-1 [1910 kB] Get:146 http://localhost:3142/debian unstable/main s390x libkrb5-3 s390x 1.21.3-5 [319 kB] Get:147 http://localhost:3142/debian unstable/main s390x libgssapi-krb5-2 s390x 1.21.3-5 [132 kB] Get:148 http://localhost:3142/debian unstable/main s390x libgssrpc4t64 s390x 1.21.3-5 [58.6 kB] Get:149 http://localhost:3142/debian unstable/main s390x libkadm5clnt-mit12 s390x 1.21.3-5 [41.1 kB] Get:150 http://localhost:3142/debian unstable/main s390x libkdb5-10t64 s390x 1.21.3-5 [42.5 kB] Get:151 http://localhost:3142/debian unstable/main s390x libkadm5srv-mit12 s390x 1.21.3-5 [54.1 kB] Get:152 http://localhost:3142/debian unstable/main s390x krb5-multidev s390x 1.21.3-5 [126 kB] Get:153 http://localhost:3142/debian unstable/main s390x libasan8 s390x 14.2.0-19 [2570 kB] Get:154 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 14.2.0-19 [8588 B] Get:155 http://localhost:3142/debian unstable/main s390x libgmp10 s390x 2:6.3.0+dfsg-3 [604 kB] Get:156 http://localhost:3142/debian unstable/main s390x libnettle8t64 s390x 3.10.1-1 [319 kB] Get:157 http://localhost:3142/debian unstable/main s390x libhogweed6t64 s390x 3.10.1-1 [337 kB] Get:158 http://localhost:3142/debian unstable/main s390x libunistring5 s390x 1.3-1 [470 kB] Get:159 http://localhost:3142/debian unstable/main s390x libidn2-0 s390x 2.3.8-1 [108 kB] Get:160 http://localhost:3142/debian unstable/main s390x libffi8 s390x 3.4.7-1 [21.0 kB] Get:161 http://localhost:3142/debian unstable/main s390x libp11-kit0 s390x 0.25.5-3 [429 kB] Get:162 http://localhost:3142/debian unstable/main s390x libtasn1-6 s390x 4.20.0-2 [48.8 kB] Get:163 http://localhost:3142/debian unstable/main s390x libgnutls30t64 s390x 3.8.9-2 [1382 kB] Get:164 http://localhost:3142/debian unstable/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-9 [673 kB] Get:165 http://localhost:3142/debian unstable/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-9 [19.5 kB] Get:166 http://localhost:3142/debian unstable/main s390x libsasl2-2 s390x 2.1.28+dfsg1-9 [56.9 kB] Get:167 http://localhost:3142/debian unstable/main s390x libldap2 s390x 2.6.9+dfsg-2 [187 kB] Get:168 http://localhost:3142/debian unstable/main s390x libnghttp2-14 s390x 1.64.0-1 [72.8 kB] Get:169 http://localhost:3142/debian unstable/main s390x libnghttp3-9 s390x 1.8.0-1 [64.6 kB] Get:170 http://localhost:3142/debian unstable/main s390x libngtcp2-16 s390x 1.11.0-1 [125 kB] Get:171 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls8 s390x 1.11.0-1 [27.9 kB] Get:172 http://localhost:3142/debian unstable/main s390x libpsl5t64 s390x 0.21.2-1.1+b1 [57.2 kB] Get:173 http://localhost:3142/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b5 [57.0 kB] Get:174 http://localhost:3142/debian unstable/main s390x libssh2-1t64 s390x 1.11.1-1 [238 kB] Get:175 http://localhost:3142/debian unstable/main s390x libcurl3t64-gnutls s390x 8.12.1-3 [350 kB] Get:176 http://localhost:3142/debian unstable/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10+b1 [175 kB] Get:177 http://localhost:3142/debian unstable/main s390x libunbound8 s390x 1.22.0-1+b1 [571 kB] Get:178 http://localhost:3142/debian unstable/main s390x libgnutls-dane0t64 s390x 3.8.9-2 [455 kB] Get:179 http://localhost:3142/debian unstable/main s390x libgnutls-openssl27t64 s390x 3.8.9-2 [455 kB] Get:180 http://localhost:3142/debian unstable/main s390x libidn2-dev s390x 2.3.8-1 [102 kB] Get:181 http://localhost:3142/debian unstable/main s390x libp11-kit-dev s390x 0.25.5-3 [208 kB] Get:182 http://localhost:3142/debian unstable/main s390x libtasn1-6-dev s390x 4.20.0-2 [98.4 kB] Get:183 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 14.2.0-19 [764 kB] Get:184 http://localhost:3142/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.3.0+dfsg-3 [329 kB] Get:185 http://localhost:3142/debian unstable/main s390x libgmp-dev s390x 2:6.3.0+dfsg-3 [686 kB] Get:186 http://localhost:3142/debian unstable/main s390x nettle-dev s390x 3.10.1-1 [1333 kB] Get:187 http://localhost:3142/debian unstable/main s390x libgnutls28-dev s390x 3.8.9-2 [1318 kB] Get:188 http://localhost:3142/debian unstable/main s390x libkrb5-dev s390x 1.21.3-5 [16.1 kB] Get:189 http://localhost:3142/debian unstable/main s390x libldap-dev s390x 2.6.9+dfsg-2 [304 kB] Get:190 http://localhost:3142/debian unstable/main s390x libnghttp2-dev s390x 1.64.0-1 [113 kB] Get:191 http://localhost:3142/debian unstable/main s390x libnghttp3-dev s390x 1.8.0-1 [89.6 kB] Get:192 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls-dev s390x 1.11.0-1 [32.7 kB] Get:193 http://localhost:3142/debian unstable/main s390x libngtcp2-dev s390x 1.11.0-1 [176 kB] Get:194 http://localhost:3142/debian unstable/main s390x libpsl-dev s390x 0.21.2-1.1+b1 [77.8 kB] Get:195 http://localhost:3142/debian unstable/main s390x librtmp-dev s390x 2.4+20151223.gitfa8646d.1-2+b5 [67.2 kB] Get:196 http://localhost:3142/debian unstable/main s390x libssl-dev s390x 3.4.1-1 [2410 kB] Get:197 http://localhost:3142/debian unstable/main s390x libssh2-1-dev s390x 1.11.1-1 [388 kB] Get:198 http://localhost:3142/debian unstable/main s390x libzstd-dev s390x 1.5.7+dfsg-1 [391 kB] Get:199 http://localhost:3142/debian unstable/main s390x libcurl4-gnutls-dev s390x 8.12.1-3 [471 kB] Get:200 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 14.2.0-19 [132 kB] Get:201 http://localhost:3142/debian unstable/main s390x libitm1 s390x 14.2.0-19 [26.9 kB] Get:202 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 14.2.0-19 [1056 kB] Get:203 http://localhost:3142/debian unstable/main s390x libgcc-14-dev s390x 14.2.0-19 [876 kB] Get:204 http://localhost:3142/debian unstable/main s390x libhtscodecs2 s390x 1.6.1-2 [85.1 kB] Get:205 http://localhost:3142/debian unstable/main s390x libhtscodecs-dev s390x 1.6.1-2 [2987 kB] Get:206 http://localhost:3142/debian unstable/main s390x liblzma5 s390x 5.6.4-1 [281 kB] Get:207 http://localhost:3142/debian unstable/main s390x liblzma-dev s390x 5.6.4-1 [323 kB] Get:208 http://localhost:3142/debian unstable/main s390x libtinfo6 s390x 6.5+20250216-2 [349 kB] Get:209 http://localhost:3142/debian unstable/main s390x libncurses6 s390x 6.5+20250216-2 [107 kB] Get:210 http://localhost:3142/debian unstable/main s390x libncursesw6 s390x 6.5+20250216-2 [136 kB] Get:211 http://localhost:3142/debian unstable/main s390x libncurses-dev s390x 6.5+20250216-2 [357 kB] Get:212 http://localhost:3142/debian unstable/main s390x libstaden-read14t64 s390x 1.15.0-1.1+b2 [274 kB] Get:213 http://localhost:3142/debian unstable/main s390x libstaden-read-dev s390x 1.15.0-1.1+b2 [354 kB] Get:214 http://localhost:3142/debian unstable/main s390x libstdc++-14-dev s390x 14.2.0-19 [2409 kB] Get:215 http://localhost:3142/debian unstable/main amd64 tklib all 0.9-1 [1749 kB] Preconfiguring packages ... Fetched 130 MB in 4s (30.0 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12838 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-2_amd64.deb ... Unpacking libmagic-mgc (1:5.46-2) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-2_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-2) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-2_amd64.deb ... Unpacking file (1:5.46-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libc6-s390x-cross (2.41-6cross2) ... Setting up libmagic1t64:amd64 (1:5.46-2) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up gcc-14-cross-base (14.2.0-12cross1) ... Setting up file (1:5.46-2) ... Setting up libfakeroot:amd64 (1.37.1-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up fakeroot (1.37.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (6.12.17-1cross2) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgcc-s1-s390x-cross (14.2.0-12cross1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up cpp-14-s390x-linux-gnu (14.2.0-12cross1) ... Setting up autoconf (2.72-3) ... Setting up libitm1-s390x-cross (14.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libc6-dev-s390x-cross (2.41-6cross2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libgomp1-s390x-cross (14.2.0-12cross1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up tcl8.6 (8.6.16+dfsg-1) ... Setting up gettext (0.23.1-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up cpp-s390x-linux-gnu (4:14.2.0-1) ... Setting up libtool (2.5.4-4) ... Setting up libstdc++6-s390x-cross (14.2.0-12cross1) ... Setting up fontconfig-config (2.15.0-2.1) ... Setting up libatomic1-s390x-cross (14.2.0-12cross1) ... Setting up itcl3:amd64 (3.4.4-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libasan8-s390x-cross (14.2.0-12cross1) ... Setting up pkgconf:s390x (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up tcl (8.6.16) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libubsan1-s390x-cross (14.2.0-12cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up itk3:amd64 (3.4.2-5) ... Setting up iwidgets4 (4.1.1-3) ... Setting up libgcc-14-dev-s390x-cross (14.2.0-12cross1) ... Setting up tk8.6 (8.6.16-1) ... Setting up debhelper (13.24.1) ... Setting up gcc-14-s390x-linux-gnu (14.2.0-12cross1) ... Setting up gcc-s390x-linux-gnu (4:14.2.0-1) ... Setting up libstdc++-14-dev-s390x-cross (14.2.0-12cross1) ... Setting up g++-14-s390x-linux-gnu (14.2.0-12cross1) ... Setting up tk (8.6.16) ... Setting up g++-s390x-linux-gnu (4:14.2.0-1) ... Setting up tklib (0.9-1) ... Setting up crossbuild-essential-s390x (12.12) ... Setting up libgcc-s1:s390x (14.2.0-19) ... Setting up libc6:s390x (2.41-6) ... Setting up libnghttp3-9:s390x (1.8.0-1) ... Setting up libnghttp3-dev:s390x (1.8.0-1) ... Setting up libdb5.3t64:s390x (5.3.28+dfsg2-9) ... Setting up libffi8:s390x (3.4.7-1) ... Setting up libasan8:s390x (14.2.0-19) ... Setting up libtasn1-6:s390x (4.20.0-2) ... Setting up libngtcp2-16:s390x (1.11.0-1) ... Setting up libbz2-1.0:s390x (1.0.8-6) ... Setting up libtasn1-6-dev:s390x (4.20.0-2) ... Setting up libstdc++6:s390x (14.2.0-19) ... Setting up libitm1:s390x (14.2.0-19) ... Setting up libtinfo6:s390x (6.5+20250216-2) ... Setting up libhtscodecs2:s390x (1.6.1-2) ... Setting up libexpat1:s390x (2.7.0-1) ... Setting up libzstd1:s390x (1.5.7+dfsg-1) ... Setting up libxau6:s390x (1:1.0.11-1) ... Setting up libxdmcp6:s390x (1:1.1.5-1) ... Setting up libkeyutils1:s390x (1.6.3-4) ... Setting up libxcb1:s390x (1.17.0-2+b1) ... Setting up libzstd-dev:s390x (1.5.7+dfsg-1) ... Setting up libxau-dev:s390x (1:1.0.11-1) ... Setting up liblzma5:s390x (5.6.4-1) ... Setting up libbrotli1:s390x (1.1.0-2+b7) ... Setting up libnghttp2-14:s390x (1.64.0-1) ... Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10+b1) ... Setting up zlib1g:s390x (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:s390x (1:4.4.38-1) ... Setting up libcom-err2:s390x (1.47.2-1+b1) ... Setting up libngtcp2-dev:s390x (1.11.0-1) ... Setting up libgomp1:s390x (14.2.0-19) ... Setting up libkrb5support0:s390x (1.21.3-5) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-9) ... Setting up libhtscodecs-dev:s390x (1.6.1-2) ... Setting up libxdmcp-dev:s390x (1:1.1.5-1) ... Setting up libnettle8t64:s390x (3.10.1-1) ... Setting up libgmp10:s390x (2:6.3.0+dfsg-3) ... Setting up libncurses6:s390x (6.5+20250216-2) ... Setting up libp11-kit0:s390x (0.25.5-3) ... Setting up libunistring5:s390x (1.3-1) ... Setting up libpng16-16t64:s390x (1.6.47-1.1) ... Setting up libatomic1:s390x (14.2.0-19) ... Setting up libuuid1:s390x (2.40.4-5) ... Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... Setting up libncursesw6:s390x (6.5+20250216-2) ... Setting up libk5crypto3:s390x (1.21.3-5) ... Setting up liblzma-dev:s390x (5.6.4-1) ... Setting up libubsan1:s390x (14.2.0-19) ... Setting up libhogweed6t64:s390x (3.10.1-1) ... Setting up libcrypt-dev:s390x (1:4.4.38-1) ... Setting up libc6-dev:s390x (2.41-6) ... Setting up libx11-6:s390x (2:1.8.10-2) ... Setting up libgcc-14-dev:s390x (14.2.0-19) ... Setting up libstdc++-14-dev:s390x (14.2.0-19) ... Setting up libbrotli-dev:s390x (1.1.0-2+b7) ... Setting up libp11-kit-dev:s390x (0.25.5-3) ... Setting up libbz2-dev:s390x (1.0.8-6) ... Setting up libnghttp2-dev:s390x (1.64.0-1) ... Setting up libncurses-dev:s390x (6.5+20250216-2) ... Setting up libxcb1-dev:s390x (1.17.0-2+b1) ... Setting up libxrender1:s390x (1:0.9.10-1.1+b4) ... Setting up libssl3t64:s390x (3.4.1-1) ... Setting up itcl3:s390x (3.4.4-3) ... Setting up libx11-dev:s390x (2:1.8.10-2) ... Setting up libxext6:s390x (2:1.3.4-1+b3) ... Setting up libidn2-0:s390x (2.3.8-1) ... Setting up libunbound8:s390x (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:s390x (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:s390x (2.7.0-1) ... Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... Setting up uuid-dev:s390x (2.40.4-5) ... Setting up comerr-dev:s390x (2.1-1.47.2-1+b1) ... Setting up libssl-dev:s390x (3.4.1-1) ... Setting up libidn2-dev:s390x (2.3.8-1) ... Setting up libsasl2-2:s390x (2.1.28+dfsg1-9) ... Setting up libxext-dev:s390x (2:1.3.4-1+b3) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libkrb5-3:s390x (1.21.3-5) ... Setting up libxss1:s390x (1:1.2.3-1+b3) ... Setting up libfontconfig1:s390x (2.15.0-2.1) ... Setting up libssh2-1t64:s390x (1.11.1-1) ... Setting up libxrender-dev:s390x (1:0.9.10-1.1+b4) ... Setting up libldap2:s390x (2.6.9+dfsg-2) ... Setting up libgnutls30t64:s390x (3.8.9-2) ... Setting up libgnutls-openssl27t64:s390x (3.8.9-2) ... Setting up libxft2:s390x (2.3.6-1+b4) ... Setting up libgmp-dev:s390x (2:6.3.0+dfsg-3) ... Setting up nettle-dev:s390x (3.10.1-1) ... Setting up tcl8.6-dev:s390x (8.6.16+dfsg-1) ... Setting up libtk8.6:s390x (8.6.16-1) ... Setting up libpng-dev:s390x (1.6.47-1.1) ... Setting up libpsl5t64:s390x (0.21.2-1.1+b1) ... Setting up libxss-dev:s390x (1:1.2.3-1+b3) ... Setting up libpsl-dev:s390x (0.21.2-1.1+b1) ... Setting up libfreetype-dev:s390x (2.13.3+dfsg-1) ... Setting up libgnutls-dane0t64:s390x (3.8.9-2) ... Setting up itk3:s390x (3.4.2-5) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:s390x (2.6.9+dfsg-2) ... Setting up libgssapi-krb5-2:s390x (1.21.3-5) ... Setting up libssh2-1-dev:s390x (1.11.1-1) ... Setting up tcl-dev:s390x (8.6.16) ... Setting up libngtcp2-crypto-gnutls8:s390x (1.11.0-1) ... Setting up libgnutls28-dev:s390x (3.8.9-2) ... Setting up itcl3-dev:s390x (3.4.4-3) ... Setting up libfontconfig-dev:s390x (2.15.0-2.1) ... Setting up libcurl3t64-gnutls:s390x (8.12.1-3) ... Setting up libngtcp2-crypto-gnutls-dev:s390x (1.11.0-1) ... Setting up libgssrpc4t64:s390x (1.21.3-5) ... Setting up librtmp-dev:s390x (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5clnt-mit12:s390x (1.21.3-5) ... Setting up libxft-dev:s390x (2.3.6-1+b4) ... Setting up libfontconfig1-dev:s390x (2.15.0-2.1) ... Setting up libkdb5-10t64:s390x (1.21.3-5) ... Setting up libstaden-read14t64:s390x (1.15.0-1.1+b2) ... Setting up tk8.6-dev:s390x (8.6.16-1) ... Setting up libkadm5srv-mit12:s390x (1.21.3-5) ... Setting up krb5-multidev:s390x (1.21.3-5) ... Setting up itk3-dev:s390x (3.4.2-5) ... Setting up libkrb5-dev:s390x (1.21.3-5) ... Setting up tk-dev:s390x (8.6.16) ... Setting up libcurl4-gnutls-dev:s390x (8.12.1-3) ... Setting up libstaden-read-dev:s390x (1.15.0-1.1+b2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-s390x-cross_14.2.0-12cross1 libstdc++6_14.2.0-19 libstdc++6-s390x-cross_14.2.0-12cross1 linux-libc-dev_6.12.19-1 Package versions: apt_2.9.33 apt-utils_2.9.33 autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.7 base-passwd_3.6.6 bash_5.2.37-1.1+b1 binutils_2.44-3 binutils-common_2.44-3 binutils-s390x-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-s390x-linux-gnu_14.2.0-12cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-s390x-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1-1 file_1:5.46-2 findutils_4.10.0-3 fontconfig-config_2.15.0-2.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-s390x-linux-gnu_14.2.0-12cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-s390x-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-12cross1 gcc-14-s390x-linux-gnu_14.2.0-12cross1 gcc-14-s390x-linux-gnu-base_14.2.0-12cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-s390x-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 itcl3_3.4.4-3 itcl3-dev_3.4.4-3 itk3_3.4.2-5 itk3-dev_3.4.2-5 iwidgets4_4.1.1-3 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_2.9.33 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-s390x-cross_14.2.0-12cross1 libatomic1_14.2.0-19 libatomic1-s390x-cross_14.2.0-12cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libc6-dev-s390x-cross_2.41-6cross2 libc6-s390x-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-2 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.0-1 libexpat1-dev_2.7.0-1 libfakeroot_1.37.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig-dev_2.15.0-2.1 libfontconfig1_2.15.0-2.1 libfontconfig1-dev_2.15.0-2.1 libfreetype-dev_2.13.3+dfsg-1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-s390x-cross_14.2.0-12cross1 libgcc-s1_14.2.0-19 libgcc-s1-s390x-cross_14.2.0-12cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-s390x-cross_14.2.0-12cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhtscodecs-dev_1.6.1-2 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libicu76_76.1-3 libidn2-0_2.3.8-1 libidn2-dev_2.3.8-1 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-s390x-cross_14.2.0-12cross1 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma-dev_5.6.4-1 liblzma5_5.6.4-1 libmagic-mgc_1:5.46-2 libmagic1t64_1:5.46-2 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpng-dev_1.6.47-1.1 libpng16-16t64_1.6.47-1.1 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.5.5-2+b1 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.40.4-5 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstaden-read-dev_1.15.0-1.1+b2 libstaden-read14t64_1.15.0-1.1+b2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-s390x-cross_14.2.0-12cross1 libstdc++6_14.2.0-19 libstdc++6-s390x-cross_14.2.0-12cross1 libsystemd0_257.4-3 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtcl8.6_8.6.16+dfsg-1 libtinfo6_6.5+20250216-2 libtk8.6_8.6.16-1 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-s390x-cross_14.2.0-12cross1 libuchardet0_0.0.8-1+b2 libudev1_257.4-3 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libx11-6_2:1.8.10-2 libx11-data_2:1.8.10-2 libx11-dev_2:1.8.10-2 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxft-dev_2.3.6-1+b4 libxft2_2.3.6-1+b4 libxml2_2.12.7+dfsg+really2.9.14-0.3+b1 libxrender-dev_1:0.9.10-1.1+b4 libxrender1_1:0.9.10-1.1+b4 libxss-dev_1:1.2.3-1+b3 libxss1_1:1.2.3-1+b3 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.19-1 linux-libc-dev-s390x-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.40.4-5 login.defs_1:4.17.3-2 m4_1.4.19-7 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mount_2.40.4-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-2 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6+b1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tcl_8.6.16 tcl-dev_8.6.16 tcl8.6_8.6.16+dfsg-1 tcl8.6-dev_8.6.16+dfsg-1 tk_8.6.16 tk-dev_8.6.16 tk8.6_8.6.16-1 tk8.6-dev_8.6.16-1 tklib_0.9-1 tzdata_2025a-2 util-linux_2.40.4-5 uuid-dev_2.40.4-5 x11-common_1:7.7+24 x11proto-core-dev_2024.1-1 x11proto-dev_2024.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden Binary: staden, staden-common Architecture: any all Version: 2.0.0+b11-5 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://sourceforge.net/projects/staden/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/staden Vcs-Git: https://salsa.debian.org/med-team/staden.git Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev Package-List: staden deb science optional arch=any staden-common deb science optional arch=all Checksums-Sha1: a51f0a004961511734a05fd54d8b2b1b0cfd6e32 4754651 staden_2.0.0+b11.orig.tar.gz a770dce5dc8fb2dad9e1e8a8a85ec4be8ef3b8ac 16800 staden_2.0.0+b11-5.debian.tar.xz Checksums-Sha256: cd7ee17626c25bc845ebd3f6311b5a538815fb73a0dfef2393001bf579ac9649 4754651 staden_2.0.0+b11.orig.tar.gz 34008f109d1a4c97659213035fe72c0059d9e4caa80b65d6e972e0055fc32ecf 16800 staden_2.0.0+b11-5.debian.tar.xz Files: ae59565ded12242c4c2728fbf2e185a7 4754651 staden_2.0.0+b11.orig.tar.gz 532a8c853e97a38ddbc4e95e93525f66 16800 staden_2.0.0+b11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXxuwcACgkQPCZ2P2xn 5uI/qw//dVWXAscRvuRAcyK8UpglQNEVAJLZJg7DO+832OyOfd84naHsh610D6yP xNL4dOhyV6K+2fm62wF72Hx9AY/vyXRMaiEirnxm4NskiNkXU5lN51hPnyMeEAz+ yTR4K65U7Dw7TchgIZ2YZ5DSk6k2Yxcr3hCSOBmvr9RRm3YuWVMelCo1uuPyTlCj S4NZ2wY+afWXvp4vDb0KUed8BeuX1XEomACWUJpXG8W6d5ZULPXN9ShRCuuDczoL aQ3IQC+TeKSU03x6jnJEyyEpRcUBv7F/+rauAQ+TGZGKqcc5746UkHhQQQaGi4aa QTU9z66CoQ/EQysdx+oMXJYgiepwIdjRhmINeOD25c62oAMktmRzgQZs3O+YYuEo ao/HxNR3/o1DACvXbM47Qhe7OSsz/hlBFIiiuLQm9/3Kz6NXnxbN/dKbBA1MZawZ Cijb6yOPJu4b0UqTv8khNnCK2EEM0pztLM61ntOhgS1VJfi2xzMDPAMJ/Vie7QRV 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spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.9ejDjuG2XA/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-55d5be26-3348-4dc3-bc53-a8436a71706a SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' make spotless || true make[2]: Entering directory '/<>' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/<>' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-64bit \ --with-itcl=/usr/lib/tcltk/s390x-linux-gnu \ --with-itk=/usr/lib/tcltk/s390x-linux-gnu ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-64bit --with-itcl=/usr/lib/tcltk/s390x-linux-gnu --with-itk=/usr/lib/tcltk/s390x-linux-gnu checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking for s390x-linux-gnu-g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.12.1 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for s390x-linux-gnu-gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... yes checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... yes checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.1.0-31-amd64 checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking if compiler accepts -m64 flag... yes checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... using long checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/s390x-linux-gnu/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/s390x-linux-gnu/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/s390x-linux-gnu/itcl3.4 Itk: /usr/lib/tcltk/s390x-linux-gnu/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc all make[2]: Entering directory '/<>/Misc' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o crash.o -c crash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o date.o -c date.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o files.o -c files.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o find.o -c find.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o shell.o -c shell.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strings.o -c strings.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o error.o -c error.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array.o -c array.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o locks.o -c locks.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c parse_db.c: In function ‘parse_entry’: parse_db.c:234:66: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from parse_db.c:19: In function ‘sprintf’, inlined from ‘parse_entry’ at parse_db.c:234:7: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c mkdir -p /<>/lib 2>/dev/null touch /<>/lib/.dir s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils all make[2]: Entering directory '/<>/tk_utils' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c In file included from tkRaster.c:45: tkRaster.c: In function ‘DrawEnvIndex’: tkRaster.c:2266:62: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2266 | entryPtr = Tcl_FindHashEntry (&(RasterPtr->drawEnvTable), (char*)drawenvno); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function ‘CreateDrawEnv’: tkRaster.c:2353:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2353 | (char*) (RasterPtr->drawEnvCount), | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ tkRaster.c: In function ‘DestroyDrawEnv’: tkRaster.c:2381:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2381 | (char*)(drawenvptr->index)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c tkTraceDisp.c: In function ‘trace_draw_numbers’: tkTraceDisp.c:746:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from tkTraceDisp.c:2: In function ‘sprintf’, inlined from ‘trace_draw_numbers’ at tkTraceDisp.c:746:6: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c capture.c: In function ‘tcl_capture’: capture.c:53:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./tk_utils -I/<>/./Misc -I/<>/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./seq_utils -I/<> -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils all make[2]: Entering directory '/<>/text_utils' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./text_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc make[2]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/<>/seq_utils' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c renz_utils.c: In function ‘SetREnzColour’: renz_utils.c:1049:35: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from renz_utils.c:3: In function ‘sprintf’, inlined from ‘SetREnzColour’ at renz_utils.c:1049:5: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c sequence_formats.c: In function ‘get_embl_format_seq’: sequence_formats.c:729:29: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function ‘add_feat’: sequence_formats.c:481:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o edge.o -c edge.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libseq_utils.so align.o align_lib_old.o align_ss.o align_ss2.o align_sv.o dna_utils.o genetic_code.o renz_utils.o sequence_formats.o scramble.o base_comp.o open_reading_frames.o edge.o search_utils.o align_lib.o read_matrix.o filter_words.o -ltext_utils -lmisc -lm make[2]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib all make[2]: Entering directory '/<>/mutlib' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o align.o -c align.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o basecall.o -c basecall.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller.o -c caller.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_snr.o -c caller_snr.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_base.o -c caller_base.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o caller_level.o -c caller_level.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dnatable.o -c dnatable.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o muttag.o -c muttag.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag.o -c mutationtag.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutationtag_utils.o -c mutationtag_utils.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o pathutil.o -c pathutil.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o peakcall.o -c peakcall.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o stringlist.o -c stringlist.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tagarray.o -c tagarray.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trace.o -c trace.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o validate.o -c validate.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_align_lib.o -c sp_align_lib.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_alignment.o -c sp_alignment.cpp sp_alignment.cpp: In function ‘void sp::store_hashn(Hash*)’: sp_alignment.cpp:754:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ sp_alignment.cpp:754:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 754 | register int i,j,n; | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_hash_lib.o -c sp_hash_lib.cpp sp_hash_lib.cpp: In function ‘int sp::hash_word8n(char*, int*, int, int, short unsigned int*)’: sp_hash_lib.cpp:57:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 57 | register int i; | ^ sp_hash_lib.cpp:58:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:58:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:58:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:59:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int unsigned short luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq8n(char*, int*, int, int)’: sp_hash_lib.cpp:99:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp:99:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 99 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘int sp::hash_word4n(char*, int*, int, int, unsigned char*)’: sp_hash_lib.cpp:156:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 156 | register int i; | ^ sp_hash_lib.cpp:157:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~ sp_hash_lib.cpp:157:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~ sp_hash_lib.cpp:157:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 157 | register int end_base,base_index,lstart_base; | ^~~~~~~~~~~ sp_hash_lib.cpp:158:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 158 | register char unsigned luword; | ^~~~~~ sp_hash_lib.cpp: In function ‘int sp::hash_seq4n(char*, int*, int, int)’: sp_hash_lib.cpp:197:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp:197:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 197 | register int i,j,k; | ^ sp_hash_lib.cpp: In function ‘void sp::remdup(int*, int*, int*, int*)’: sp_hash_lib.cpp:411:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 411 | register int i; | ^ s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sp_matrix.o -c sp_matrix.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff.o -c tracediff.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_helper.o -c tracediff_helper.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_mutations.o -c tracediff_mutations.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_parameters.o -c tracediff_parameters.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracediff_validate.o -c tracediff_validate.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign.o -c tracealign.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_cache.o -c tracealign_cache.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_helper.o -c tracealign_helper.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_interpolate.o -c tracealign_interpolate.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_preprocess.o -c tracealign_preprocess.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tracealign_validate.o -c tracealign_validate.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan.o -c mutscan.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_helper.o -c mutscan_helper.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_validate.o -c mutscan_validate.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_analysis.o -c mutscan_analysis.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_preprocess.o -c mutscan_preprocess.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o mutscan_parameters.o -c mutscan_parameters.cpp cp /<>/./mutlib/mutlib.def 2>&- make[2]: [/<>/./mutlib/Makefile:81: /<>/lib/libmutlib.so] Error 1 (ignored) s390x-linux-gnu-g++ -shared -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DMUTLIB_EXPORTS -DDYNMAT -I/<>/./mutlib -I/<>/./Misc -I/<>/. -I/<>/./mutlib -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libmutlib.so align.o basecall.o caller.o caller_snr.o caller_base.o caller_level.o dnatable.o muttag.o mutationtag.o mutationtag_utils.o pathutil.o peakcall.o stringlist.o tagarray.o trace.o validate.o read_matrix.o sp_align_lib.o sp_alignment.o sp_hash_lib.o sp_matrix.o tracediff.o tracediff_helper.o tracediff_mutations.o tracediff_parameters.o tracediff_validate.o tracealign.o tracealign_cache.o tracealign_helper.o tracealign_interpolate.o tracealign_preprocess.o tracealign_validate.o mutscan.o mutscan_helper.o mutscan_validate.o mutscan_analysis.o mutscan_preprocess.o mutscan_parameters.o -lseq_utils -ltk_utils -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm make[2]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi all make[2]: Entering directory '/<>/abi' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o abiIO.o -c abiIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./abi -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf all make[2]: Entering directory '/<>/alf' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./alf -I/<>/./Misc -I/<> -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c alfsplit.c: In function ‘main’: alfsplit.c:347:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c: In function ‘readIndexEntry’: alfsplit.c:129:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g all make[2]: Entering directory '/<>/g' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./Misc -I/<>/./g -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc make[2]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev all make[2]: Entering directory '/<>/trev' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 all make[2]: Entering directory '/<>/primer3' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src all make[2]: Entering directory '/<>/primer3/src' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c primer3_main.c: In function ‘pr_safe_malloc’: primer3_main.c:520:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro ‘OOM_ERROR’ 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c: In function ‘boulder_print_oligos’: primer3_main.c:416:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 2147483647] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from primer3_main.c:7: In function ‘sprintf’, inlined from ‘boulder_print_oligos’ at primer3_main.c:416:7: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function ‘main’: primer3_main.c:234:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function ‘boulder_print_pairs’, inlined from ‘main’ at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function ‘sprintf’, inlined from ‘boulder_print_pairs’ at primer3_main.c:234:7, inlined from ‘main’ at primer3_main.c:109:3: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 all make[2]: Entering directory '/<>/gap4' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-local.o -c gap-local.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-remote.o -c gap-remote.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-if.o -c gap-if.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-init.o -c gap-init.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-dbstruct.o -c gap-dbstruct.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-create.o -c gap-create.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-io.o -c gap-io.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO1.o -c IO1.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io-reg.o -c io-reg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c actf.c: In function ‘actf_lock’: actf.c:246:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | write(fd, db_path, strlen(db_path)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO2.o -c IO2.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o seqInfo.o -c seqInfo.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o parse_ft.o -c parse_ft.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o IO3.o -c IO3.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_utils.o -c io_utils.c io_utils.c: In function ‘template_name_to_number’: io_utils.c:38:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 38 | return (int)Tcl_GetHashValue(hash); | ^ io_utils.c: In function ‘read_name_to_number’: io_utils.c:84:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 84 | return (int)Tcl_GetHashValue(hash); | ^ In file included from IO1.h:50, from io_utils.h:6, from io_utils.c:6: io_utils.c: In function ‘cache_template_name’: io_utils.c:549:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 549 | Tcl_SetHashValue(hash, (ClientData)number); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2556:64: note: in definition of macro ‘Tcl_SetHashValue’ 2556 | #define Tcl_SetHashValue(h, value) ((h)->clientData = (void *)(value)) | ^~~~~ io_utils.c: In function ‘cache_read_name’: io_utils.c:566:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 566 | Tcl_SetHashValue(hash, (ClientData)number); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2556:64: note: in definition of macro ‘Tcl_SetHashValue’ 2556 | #define Tcl_SetHashValue(h, value) ((h)->clientData = (void *)(value)) | ^~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o io_handle.o -c io_handle.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-tcl.o -c gap-tcl.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c tk-io-reg.c: In function ‘tk_result_is_consistency’: tk-io-reg.c:604:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 604 | if (args.cons_id == (int)gen.data) { | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap_cmds.o -c newgap_cmds.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o bubbl3.o -c bubbl3.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dbcheck.o -c dbcheck.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clones.o -c clones.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o extract.o -c extract.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o preass.o -c preass.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list.o -c list.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reactions.o -c reactions.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o probe.o -c probe.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template.o -c template.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c template_display.c: In function ‘template_callback’: template_display.c:2354:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 2354 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, t->frame, | ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from template_display.c:2: In function ‘sprintf’, inlined from ‘template_callback’ at template_display.c:2354:3: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ruler_display.o -c ruler_display.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash.o -c hash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_array.o -c gap_array.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o show_relationships.o -c show_relationships.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_assemble.o -c auto_assemble.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c readpair.c: In function ‘readpair_obj_func’: readpair.c:175:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 989 and 999 [-Wformat-overflow=] 175 | sprintf(cmd, "CreateTemplateDisplay %d {%s}", | ^~ 176 | *handle, c_list); | ~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from readpair.c:18: In function ‘sprintf’, inlined from ‘readpair_obj_func’ at readpair.c:175:3: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1060 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o complement.o -c complement.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dstrand.o -c dstrand.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo_sel.o -c oligo_sel.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o alter_rel.o -c alter_rel.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stop_codon.o -c stop_codon.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o assemble_direct.o -c assemble_direct.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU2.o -c tagU2.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o mess.o -c mess.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db.o -c copy_db.c copy_db.c: In function ‘copy_read_name’: copy_db.c:118:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 118 | sprintf(num, "#%d", iter++); | ^~ copy_db.c:118:30: note: directive argument in the range [1, 2147483646] 118 | sprintf(num, "#%d", iter++); | ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from copy_db.c:1: In function ‘sprintf’, inlined from ‘copy_read_name’ at copy_db.c:118:3: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_order.o -c contig_order.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o clip.o -c clip.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notes.o -c notes.c notes.c: In function ‘time_t2str’: notes.c:829:21: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 829 | sprintf(buf, "%s (%ld)", buf2, (long)t); | ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from notes.c:11: In function ‘sprintf’, inlined from ‘time_t2str’ at notes.c:829:5: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 5 and 1047 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_display.o -c consistency_display.c consistency_display.c: In function ‘consistency_join’: consistency_display.c:160:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 160 | gen.data = (void *)remove_dup; | ^ consistency_display.c: In function ‘consistency_callback’: consistency_display.c:883:50: warning: ‘%s’ directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] 883 | sprintf(cmd, "RulerWindowSize %d %s %s ", 1, c->frame, | ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from consistency_display.c:1: In function ‘sprintf’, inlined from ‘consistency_callback’ at consistency_display.c:883:3: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes (assuming 120) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consistency_canvas_box.o -c consistency_canvas_box.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o confidence_graph.o -c confidence_graph.c confidence_graph.c: In function ‘confidence_callback’: confidence_graph.c:531:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 531 | jdata->generic.data = (void *)conf->cons_id; | ^ confidence_graph.c:624:44: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 624 | confidence_join(io, c, conf, (int)jdata->generic.data); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o reading_coverage.o -c reading_coverage.c reading_coverage.c: In function ‘reading_coverage_callback’: reading_coverage.c:552:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 552 | jdata->generic.data = (void *)rcov->cons_id; | ^ reading_coverage.c:645:50: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 645 | reading_coverage_join(io, c, rcov, (int)jdata->generic.data); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair_coverage.o -c readpair_coverage.c readpair_coverage.c: In function ‘readpair_coverage_callback’: readpair_coverage.c:500:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 500 | jdata->generic.data = (void *)rcov->cons_id; | ^ readpair_coverage.c:594:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 594 | readpair_coverage_join(io, c, rcov, (int)jdata->generic.data); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o strand_coverage.o -c strand_coverage.c strand_coverage.c: In function ‘strand_coverage_callback’: strand_coverage.c:503:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 503 | jdata->generic.data = (void *)scov->cons_id; | ^ strand_coverage.c:541:49: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 541 | strand_coverage_join(io, c, scov, (int)jdata->generic.data); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_fragments.o -c find_fragments.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o vseqs.o -c vseqs.c In file included from vseqs.c:3: vseqs.c: In function ‘new_vcontig’: vseqs.c:60:55: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 60 | hash = Tcl_CreateHashEntry(&db->num_hash, (char *)rnum, | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ vseqs.c: In function ‘new_vrseq’: vseqs.c:158:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 158 | hash = Tcl_CreateHashEntry(&vc->num_hash, (char *)(vrseq->rnum), &new); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro ‘Tcl_CreateHashEntry’ 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ vseqs.c: In function ‘del_vrseq’: vseqs.c:215:49: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 215 | hash = Tcl_FindHashEntry(&vc->num_hash, (char *)(vrseq->rnum)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ vseqs.c: In function ‘vrseq_index2ptr’: vseqs.c:409:45: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 409 | hash = Tcl_FindHashEntry(&vc->num_hash, (char *)num); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro ‘Tcl_FindHashEntry’ 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o legacy_f2c.o -c legacy_f2c.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o f2c.o -c f2c.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdUtils.o -c tkEdUtils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edInterface.o -c edInterface.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edUtils2.o -c edUtils2.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagU1.o -c tagU1.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o undo.o -c undo.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edExtend.o -c edExtend.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edCommands.o -c edCommands.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o edMutations.o -c edMutations.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagEditor.o -c tagEditor.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o searchUtils.o -c searchUtils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:281:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:281:18: note: assuming directive output of 12 bytes 281 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:281:5: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_cons.o -c tman_cons.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_diff.o -c tman_diff.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contigEditor.o -c contigEditor.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o join.o -c join.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o oligo.o -c oligo.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap.so -L/<>/lib gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o IO2.o seqInfo.o parse_ft.o IO3.o io_utils.o io_handle.o gap-tcl.o tk-io-reg.o gap_cli_arg.o gap_globals.o newgap_cmds.o init.o consen.o gap_hash.o qual.o qualIO.o bubbl3.o tagdb.o notedb.o active_tags.o dbcheck.o clones.o extract.o preass.o list.o reactions.o probe.o template.o template_display.o ruler_display.o gap_canvas_box.o hash.o gap_array.o show_relationships.o fij.o hash_lib.o do_fij.o auto_assemble.o dis_readings.o find_repeats.o break_contig.o quality_plot.o readpair.o contig_selector.o complement.o cs-object.o list_proc.o dstrand.o oligo_sel.o primlib.o alter_rel.o restriction_enzymes.o stop_codon.o assemble_direct.o check_assembly.o tagU2.o mess.o find_oligo.o copy_db.o contig_order.o clip.o notes.o consistency_display.o consistency_canvas_box.o confidence_graph.o reading_coverage.o readpair_coverage.o strand_coverage.o find_fragments.o vseqs.o legacy_f2c.o f2c.o shuffle_pads.o auto_break.o tkEditor.o tkEdNames.o tkEdUtils.o edInterface.o edUtils2.o tagU1.o undo.o edExtend.o edCommands.o edMutations.o tagEditor.o searchUtils.o tman_interface.o tman_display.o tman_cons.o tman_diff.o contigEditor.o join.o oligo.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltk_utils -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lg -lmutlib -lmisc -lprimer3 -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_db_main.o -c copy_db_main.c copy_db_main.c: In function ‘main’: copy_db_main.c:86:9: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | scanf("%c", &ans); | ^~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap4 -I/<>/./Misc -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/. -I/<>/./mutlib -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o text-io-reg.o -c text-io-reg.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o copy_db gap-local.o gap-remote.o gap-if.o gap-init.o gap-dbstruct.o gap-create.o gap-error.o stack_dump.o gap-io.o IO1.o io-reg.o actf.o copy_db.o copy_db_main.o text-io-reg.o io_utils.o io_handle.o -lg -ltext_utils -lmisc -L/usr/lib/s390x-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish all make[2]: Entering directory '/<>/prefinish' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish.o -c finish.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_hash.o -c finish_hash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_long.o -c finish_long.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_main.o -c finish_main.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_utils.o -c finish_utils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_walk.o -c finish_walk.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_reverse.o -c finish_reverse.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_filter.o -c finish_filter.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o finish_pcr.o -c finish_pcr.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dust.o -c dust.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libprefinish.so finish.o finish_hash.o finish_long.o finish_main.o finish_utils.o finish_walk.o finish_reverse.o finish_filter.o finish_pcr.o dust.o -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap -lprimer3 s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o insert_size_dist.o -c insert_size_dist.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o insert_size_dist insert_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/s390x-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_size_dist.o -c read_size_dist.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_size_dist read_size_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/s390x-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./prefinish -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_conf_dist.o -c read_conf_dist.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o read_conf_dist read_conf_dist.o -lg -lgap -ltk_utils -lprimer3 -lmutlib -lseq_utils -lmisc -L/usr/lib/s390x-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo all make[2]: Entering directory '/<>/haplo' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_tcl.o -c haplo_tcl.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_snps.o -c haplo_snps.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_split.o -c haplo_split.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -o haplo_cons.o -c haplo_cons.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./haplo -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./incrTcl-3.3cvs/itk/generic -I/<>/./incrTcl-3.3cvs/itcl/generic -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libhaplo.so haplo_tcl.o haplo_snps.o haplo_split.o haplo_cons.o -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba all make[2]: Entering directory '/<>/eba' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o qual.o -c qual.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./eba -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o conf.o -c conf.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/<>/init_exp' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./init_exp -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o init_exp.o -c init_exp.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/<>/get_scf_field' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./get_scf_field -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc make[2]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin all make[2]: Entering directory '/<>/spin' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg.o -c seq_reg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_reg_cmds.o -c seq_reg_cmds.c seq_reg_cmds.c: In function ‘GetActiveSeqName’: seq_reg_cmds.c:919:32: warning: zero-length gnu_printf format string [-Wformat-zero-length] 919 | vTcl_SetResult(interp, ""); | ^~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o raster_cmds.o -c raster_cmds.c raster_cmds.c: In function ‘RasterResults’: raster_cmds.c:250:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 250 | zoom = (int)gen.result; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_raster.o -c seq_raster.c seq_raster.c: In function ‘GetRasterZoom’: seq_raster.c:1512:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1512 | result = (int)gen.result; | ^ seq_raster.c: In function ‘seq_raster_callback’: seq_raster.c:3012:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 3012 | jdata->info.result = (void *)zoom; | ^ seq_raster.c:3034:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 3034 | jdata->info.result = (void *)zoom; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequtils.o -c sequtils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_results.o -c seq_results.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_sendto.o -c seq_sendto.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o spin_globals.o -c spin_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seq_plot_funcs.o -c seq_plot_funcs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed.o -c seqed.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqed.o -c tkSeqed.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedUtils.o -c tkSeqedUtils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o tkSeqedNames.o -c tkSeqedNames.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_write.o -c seqed_write.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqedInterface.o -c seqedInterface.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_translate.o -c seqed_translate.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_restriction_enzymes.o -c seqed_restriction_enzymes.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o seqed_search.o -c seqed_search.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sequence_pair_display.o -c sequence_pair_display.c sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:316:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 316 | sprintf(tmp, "%10d", i*10); | ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from /<>/./tk_utils/tkRaster.h:9, from seq_reg.h:6, from sequence_pair_display.c:4: In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:316:2: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sequence_pair_display.c: In function ‘update_seqs’: sequence_pair_display.c:344:27: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 344 | sprintf(tmp, "%10d", i*10); | ^ In function ‘sprintf’, inlined from ‘update_seqs’ at sequence_pair_display.c:344:2: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o emboss_input_funcs.o -c emboss_input_funcs.c emboss_input_funcs.c: In function ‘emboss_graph_callback’: emboss_input_funcs.c:260:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 260 | jdata->info.result = (void *)id; | ^ emboss_input_funcs.c: In function ‘read_emboss_data_file’: emboss_input_funcs.c:402:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:437:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fscanf(fp, "##Number %d\n", &data->n_data_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:444:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:470:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 470 | fscanf(fp, "##Number %d\n", &data->n_graph_obj); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:477:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 477 | fgets(line, 1024, fp); | ^~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:518:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fscanf(fp, "%lf %lf\n", &pos, &p_array[i].score); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c: In function ‘init_emboss_stick_create’: emboss_input_funcs.c:658:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 658 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:659:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 659 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ emboss_input_funcs.c:660:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 660 | fgets(dummy1, 100, fp); | ^~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o readpam.o -c readpam.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o compare_spans.o -c compare_spans.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_hash.o -c sip_hash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_similar_spans.o -c sip_similar_spans.c sip_similar_spans.c: In function ‘similar_spans_callback’: sip_similar_spans.c:289:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 289 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_find_identity.o -c sip_find_identity.c sip_find_identity.c: In function ‘identities_callback’: sip_find_identity.c:210:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 210 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_quick_scan.o -c sip_quick_scan.c sip_quick_scan.c: In function ‘quick_scan_callback’: sip_quick_scan.c:234:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 234 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_align.o -c sip_align.c sip_align.c: In function ‘align_callback’: sip_align.c:181:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 181 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_globals.o -c sip_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_cmds.o -c sip_cmds.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_results.o -c sip_results.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o rescan_matches.o -c rescan_matches.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o probs.o -c probs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sim.o -c sim.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o sip_sim.o -c sip_sim.c sip_sim.c: In function ‘sim_callback’: sip_sim.c:197:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 197 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_globals.o -c nip_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_cmds.o -c nip_cmds.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_base_comp.o -c nip_base_comp.c nip_base_comp.c: In function ‘plot_base_comp_callback’: nip_base_comp.c:183:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 183 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_gene_search.o -c nip_gene_search.c nip_gene_search.c: In function ‘plot_gene_search_callback’: nip_gene_search.c:206:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 206 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_trna_search.o -c nip_trna_search.c nip_trna_search.c: In function ‘trna_search_callback’: nip_trna_search.c:173:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 173 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o codon_content.o -c codon_content.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_stop_codon.o -c nip_stop_codon.c nip_stop_codon.c: In function ‘nip_stop_codons_callback’: nip_stop_codon.c:195:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 195 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o trna_search.o -c trna_search.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o splice_search.o -c splice_search.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_splice_search.o -c nip_splice_search.c nip_splice_search.c: In function ‘splice_search_callback’: nip_splice_search.c:183:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 183 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_string_search.o -c nip_string_search.c nip_string_search.c: In function ‘nip_string_search_callback’: nip_string_search.c:170:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 170 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_wtmatrix_search.o -c nip_wtmatrix_search.c nip_wtmatrix_search.c: In function ‘nip_wtmatrix_search_callback’: nip_wtmatrix_search.c:167:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 167 | jdata->info.result = (void *)id; | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_restriction_enzymes.o -c nip_restriction_enzymes.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o nip_canvas_box.o -c nip_canvas_box.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -o dinuc_freqs.o -c dinuc_freqs.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./spin -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./tk_utils -I/<>/./seq_utils -I/usr/include -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libspin.so seq_reg.o seq_reg_cmds.o raster_cmds.o seq_raster.o sequtils.o seq_results.o seq_sendto.o spin_globals.o seq_plot_funcs.o seqed.o tkSeqed.o tkSeqedUtils.o tkSeqedNames.o seqed_write.o seqedInterface.o seqed_translate.o seqed_restriction_enzymes.o seqed_search.o sequence_pair_display.o emboss_input_funcs.o readpam.o compare_spans.o sip_hash.o sip_similar_spans.o sip_find_identity.o sip_quick_scan.o sip_align.o sip_globals.o sip_cmds.o sip_results.o rescan_matches.o probs.o sim.o sip_sim.o init.o nip_globals.o nip_cmds.o nip_base_comp.o nip_gene_search.o nip_trna_search.o codon_content.o nip_stop_codon.o trna_search.o splice_search.o nip_splice_search.o nip_string_search.o nip_wtmatrix_search.o nip_restriction_enzymes.o nip_canvas_box.o dinuc_freqs.o -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -ltk_utils -lseq_utils -lmisc make[2]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip all make[2]: Entering directory '/<>/vector_clip' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./vector_clip -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o vector_clip.o -c vector_clip.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o vector_clip vector_clip.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff all make[2]: Entering directory '/<>/tracediff' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./tracediff -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp s390x-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tracediff main.o -lmutlib -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq all make[2]: Entering directory '/<>/screen_seq' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./screen_seq -I/<>/./text_utils -I/usr/include -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o screen_seq.o -c screen_seq.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o screen_seq screen_seq.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -lm make[2]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip all make[2]: Entering directory '/<>/qclip' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o qclip.o -c qclip.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o consen.o -c consen.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./qclip -I/usr/include -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o qclip qclip.o consen.o seqInfo.o -ltext_utils -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip all make[2]: Entering directory '/<>/polyA_clip' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o polyA_clip.o -c polyA_clip.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./polyA_clip -I/usr/include -I/<>/./seq_utils -I/<>/./tk_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o seqInfo.o -c seqInfo.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o polyA_clip polyA_clip.o seqInfo.o -lseq_utils -ltext_utils -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops all make[2]: Entering directory '/<>/stops' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./stops -I/<>/./Misc -I/usr/include -I/<>/./tk_utils -I/<> -DSVN_VERSION="" -o stops.o -c stops.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o stops stops.o -ltext_utils -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for Pregap4. make[2]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights all make[2]: Entering directory '/<>/make_weights' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./make_weights -I/<>/./seq_utils -I/<>/./Misc -I/<>/./text_utils -I/<> -DSVN_VERSION="" -o make_weights.o -c make_weights.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o make_weights make_weights.o -lseq_utils -ltext_utils -lmisc -lm -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz all make[2]: Entering directory '/<>/find_renz' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./find_renz -I/<>/./seq_utils -I/<>/./Misc -I/<> -DSVN_VERSION="" -o find_renz.o -c find_renz.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o find_renz find_renz.o -lseq_utils -ltext_utils -lmisc -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for spin_emboss. make[2]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads all make[2]: Entering directory '/<>/copy_reads' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads_globals.o -c copy_reads_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o copy_reads.o -c copy_reads.c copy_reads.c: In function ‘create_si_struct’: copy_reads.c:125:26: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 125 | sprintf(comment, "%s %s", tag_text, io_name(io)); | ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from copy_reads.c:4: In function ‘sprintf’, inlined from ‘create_si_struct’ at copy_reads.c:125:5: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ copy_reads.c: In function ‘copy_reads’: copy_reads.c:409:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 99 [-Wformat-overflow=] 409 | sprintf(comment, "%s %s", tag_text, io_name(io_to)); | ^~ In function ‘sprintf’, inlined from ‘copy_reads’ at copy_reads.c:409:6: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./copy_reads -I/<>/./Misc -I/<>/./gap4 -I/<>/./g -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libcopy_reads.so copy_reads_globals.o copy_reads.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltk_utils -lmisc -lgap make[2]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins all make[2]: Entering directory '/<>/hetins' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./hetins -I/<>/./Misc -I/usr/include -I/<> -DSVN_VERSION="" -o hetins.o -c hetins.c s390x-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm make[2]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan all make[2]: Entering directory '/<>/mutscan' s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o main.o -c main.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o pathutil.o -c pathutil.cpp s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUSE_NON_CONST -I/<>/./mutscan -I/<>/./Misc -I/usr/include -I/<>/. -I/<>/./mutlib -I/<> -DSVN_VERSION="" -o stringlist.o -c stringlist.cpp s390x-linux-gnu-g++ -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o mutscan main.o pathutil.o stringlist.o -lmutlib -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -ltext_utils -lmisc -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtk_utils.so, needed by /<>/lib/libmutlib.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert all make[2]: Entering directory '/<>/convert' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o list.o -c list.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o main.o -c main.c main.c: In function ‘get_db’: main.c:87:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(name, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:92:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(version, sizeof(IOString), stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapIO.o -c dapIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o dapDB.o -c dapDB.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapIO.o -c bapIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o bapDB.o -c bapDB.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o gapDB.o -c gapDB.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o process.o -c process.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./convert -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./primer3/src -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/<>/./gap4 -I/<>/./g -I/<> -DSVN_VERSION="" -o flat_sd.o -c flat_sd.c s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o staden_convert list.o main.o dapIO.o dapDB.o bapIO.o bapDB.o gapDB.o process.o flat_sd.o -lm -lgap -lg -lprimer3 -lmutlib -ltk_utils -lseq_utils -lmisc -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 all make[2]: Entering directory '/<>/gap5' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_iface_g.o -c tg_iface_g.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o b+tree2.o -c b+tree2.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hache_table.o -c hache_table.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_gio.o -c tg_gio.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_cache.o -c tg_cache.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_contig.o -c tg_contig.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_sequence.o -c tg_sequence.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_track.o -c tg_track.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_bin.o -c tg_bin.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_utils.o -c tg_utils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_register.o -c tg_register.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tracks.o -c tg_tracks.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_anno.o -c tg_anno.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_library.o -c tg_library.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_scaffold.o -c tg_scaffold.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_check.o -c tg_check.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o actf.o -c actf.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_cli_arg.o -c gap_cli_arg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_tcl.o -c tg_tcl.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index.o -c tg_index.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o newgap5_cmds.o -c newgap5_cmds.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap4_compat.o -c gap4_compat.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_hash.o -c gap_hash.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o hash_lib.o -c hash_lib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qual.o -c qual.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o qualIO.o -c qualIO.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_globals.o -c gap_globals.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tagdb.o -c tagdb.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o init.o -c init.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o notedb.o -c notedb.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o active_tags.o -c active_tags.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o list_proc.o -c list_proc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap-error.o -c gap-error.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o stack_dump.o -c stack_dump.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tk-io-reg.o -c tk-io-reg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkAppInit.o -c tkAppInit.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consen.o -c consen.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_selector.o -c contig_selector.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o cs-object.o -c cs-object.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_repeats.o -c find_repeats.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o readpair.o -c readpair.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o check_assembly.o -c check_assembly.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o consensus.o -c consensus.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o read_depth.o -c read_depth.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_range.o -c gap_range.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_display.o -c template_display.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depth_track.o -c depth_track.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o template_draw.o -c template_draw.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o quality_plot.o -c quality_plot.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tag_plot.o -c tag_plot.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fij.o -c fij.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o do_fij.o -c do_fij.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o break_contig.o -c break_contig.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o dis_readings.o -c dis_readings.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_contigs.o -c export_contigs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o export_snps.o -c export_snps.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_oligo.o -c find_oligo.c find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%ld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /<>/./gap5/hache_table.h:5, from /<>/./gap5/g-struct.h:24, from /<>/./gap5/g.h:1, from tg_struct.h:4, from tg_gio.h:4, from io_utils.h:6, from find_oligo.c:4: In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ find_oligo.c: In function ‘StringMatch’: find_oligo.c:957:40: warning: ‘%ld’ directive writing between 1 and 19 bytes into a region of size 10 [-Wformat-overflow=] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ find_oligo.c:957:41: note: format string is defined here 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); find_oligo.c:957:40: note: directive argument in the range [0, 9223372036854775807] 957 | sprintf(name1, "%"PRIrec"", ABS(c1[j])); | ^~~ In function ‘sprintf’, inlined from ‘StringMatch’ at find_oligo.c:957:4: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 20 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o import_gff.o -c import_gff.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o shuffle_pads.o -c shuffle_pads.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o str_finder.o -c str_finder.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o restriction_enzymes.o -c restriction_enzymes.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o gap_canvas_box.o -c gap_canvas_box.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o contig_extend.o -c contig_extend.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o auto_break.o -c auto_break.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o find_haplotypes.o -c find_haplotypes.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o interval_tree.o -c interval_tree.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-alloc.o -c g-alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_view.o -c editor_view.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_join.o -c editor_join.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_search.o -c editor_search.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEdNames.o -c tkEdNames.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tkEditor.o -c tkEditor.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_interface.o -c tman_interface.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tman_display.o -c tman_display.c tman_display.c: In function ‘repositionSeq’: tman_display.c:279:21: warning: ‘ xview moveto ’ directive writing 14 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~ tman_display.c:279:18: note: assuming directive output of 12 bytes 279 | sprintf(buf, "%s xview moveto %g;%s icursor %d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/include/tcl8.6/tcl-private/generic/tcl.h:125, from /usr/include/tcl8.6/tk-private/generic/tk.h:19, from tman_display.c:1: In function ‘sprintf’, inlined from ‘repositionSeq’ at tman_display.c:279:5: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 28 and 2096 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o primlib.o -c primlib.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o editor_oligo.o -c editor_oligo.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o tg_index_common.o -c tg_index_common.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o baf.o -c baf.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maq.o -c maq.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o maqmap.o -c maqmap.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_index.o -c sam_index.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o sam_pileup.o -c sam_pileup.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o ace.o -c ace.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o caf.o -c caf.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o fasta.o -c fasta.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o afg.o -c afg.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -o depad_seq_tree.o -c depad_seq_tree.c s390x-linux-gnu-gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/<>/./gap5 -I/<>/./Misc -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/usr/include -I/<>/./tk_utils -I/<>/./seq_utils -I/<>/./primer3/src -I/<> -DSVN_VERSION="" -fPIC -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /<>/lib/libgap5.so -L/<>/lib newgap5_cmds.o gap4_compat.o gap_hash.o hash_lib.o qual.o qualIO.o gap_globals.o tagdb.o init.o notedb.o active_tags.o list_proc.o gap-error.o stack_dump.o tk-io-reg.o tkAppInit.o consen.o contig_selector.o cs-object.o find_repeats.o readpair.o check_assembly.o consensus.o read_depth.o gap_range.o template_display.o depth_track.o template_draw.o quality_plot.o tag_plot.o fij.o do_fij.o break_contig.o dis_readings.o export_contigs.o export_snps.o find_oligo.o import_gff.o shuffle_pads.o str_finder.o restriction_enzymes.o gap_canvas_box.o contig_extend.o auto_break.o find_haplotypes.o interval_tree.o g-files.o g-db.o g-struct.o g-error.o g-alloc.o g-io.o g-connect.o g-request.o tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o editor_view.o editor_join.o editor_search.o tkEdNames.o tkEditor.o tman_interface.o tman_display.o primlib.o editor_oligo.o tg_index_common.o baf.o maq.o maqmap.o sam_index.o sam_pileup.o ace.o caf.o fasta.o afg.o depad_seq_tree.o -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: tg_index_common.o: in function `bttmp_file_open': ./gap5/tg_index_common.c:105:(.text+0x702): warning: the use of `tmpnam' is dangerous, better use `mkstemp' s390x-linux-gnu-gcc -L/<>/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o tg_index.bin tg_iface_g.o b+tree2.o hache_table.o tg_gio.o tg_cache.o tg_contig.o tg_sequence.o tg_track.o tg_bin.o tg_utils.o tg_register.o tg_tracks.o tg_anno.o tg_library.o tg_scaffold.o tg_check.o actf.o gap_cli_arg.o tg_tcl.o tg_index.o -lgap5 -L/usr/lib/s390x-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -ltk_utils -lz -llzma -L/usr/lib/s390x-linux-gnu -ltk8.6 -L/usr/lib/s390x-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lseq_utils -lprimer3 -lmisc -lm /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: warning: libtext_utils.so, needed by /<>/lib/libseq_utils.so, not found (try using -rpath or -rpath-link) make[2]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts all make[2]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for scripts. make[2]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data all make[2]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' Nothing to build for data. make[2]: Leaving directory '/<>/data' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/staden-2.0.0\+b11/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/share/staden/etc mkdir -p /<>/debian/tmp/usr/share/staden mkdir -p /<>/debian/tmp/usr/share/staden/scripts mkdir -p /<>/debian/tmp/usr/share/staden/tcl mkdir -p /<>/debian/tmp/usr/share/doc mkdir -p /<>/debian/tmp/usr/share/man cp shlib.conf /<>/debian/tmp/usr/share/staden/etc cp ./staden.profile /<>/debian/tmp/usr/share/staden make JOB=install make[3]: Entering directory '/<>' cd Misc && make -f /<>/./Misc/Makefile -j1 BUILD=/<> SRC=/<>/./Misc SUBDIR=Misc install make[4]: Entering directory '/<>/Misc' cp /<>/lib/libmisc.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden make[4]: Leaving directory '/<>/Misc' cd tk_utils && make -f /<>/./tk_utils/Makefile -j1 BUILD=/<> SRC=/<>/./tk_utils SUBDIR=tk_utils install make[4]: Entering directory '/<>/tk_utils' cp /<>/lib/libtk_utils.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden mkdir /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/*.tcl /<>/./tk_utils/tclIndex /<>/debian/tmp/usr/share/staden/tcl/tk_utils cp /<>/./tk_utils/stash /<>/debian/tmp/usr/bin cp /<>/./tk_utils/2bars_*.bmp /<>/./tk_utils/help_config /<>/./tk_utils/tk_utilsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/tk_utils' cd text_utils && make -f /<>/./text_utils/Makefile -j1 BUILD=/<> SRC=/<>/./text_utils SUBDIR=text_utils install make[4]: Entering directory '/<>/text_utils' cp /<>/lib/libtext_utils.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden make[4]: Leaving directory '/<>/text_utils' cd seq_utils && make -f /<>/./seq_utils/Makefile -j1 BUILD=/<> SRC=/<>/./seq_utils SUBDIR=seq_utils install make[4]: Entering directory '/<>/seq_utils' cp /<>/lib/libseq_utils.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp /<>/./seq_utils/align_lib_nuc_matrix /<>/./seq_utils/nuc_matrix /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/seq_utils' cd mutlib && make -f /<>/./mutlib/Makefile -j1 BUILD=/<> SRC=/<>/./mutlib SUBDIR=mutlib install make[4]: Entering directory '/<>/mutlib' cp /<>/lib/libmutlib.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden make[4]: Leaving directory '/<>/mutlib' cd abi && make -f /<>/./abi/Makefile -j1 BUILD=/<> SRC=/<>/./abi SUBDIR=abi install make[4]: Entering directory '/<>/abi' cp getABISampleName getABIcomment getABIdate getABIfield /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/abi' cd alf && make -f /<>/./alf/Makefile -j1 BUILD=/<> SRC=/<>/./alf SUBDIR=alf install make[4]: Entering directory '/<>/alf' cp alfsplit /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/alf' cd g && make -f /<>/./g/Makefile -j1 BUILD=/<> SRC=/<>/./g SUBDIR=g install make[4]: Entering directory '/<>/g' cp /<>/lib/libg.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden make[4]: Leaving directory '/<>/g' cd trev && make -f /<>/./trev/Makefile -j1 BUILD=/<> SRC=/<>/./trev SUBDIR=trev install make[4]: Entering directory '/<>/trev' install trev /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trev.tcl /<>/debian/tmp/usr/share/staden/tcl/trev cp /<>/./trev/trevrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/trev' cd primer3 && make -f /<>/./primer3/Makefile -j1 BUILD=/<> SRC=/<>/./primer3 SUBDIR=primer3 install make[4]: Entering directory '/<>/primer3' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/primer3' cd primer3/src && make -f /<>/./primer3/src/Makefile -j1 BUILD=/<> SRC=/<>/./primer3/src SUBDIR=primer3/src install make[4]: Entering directory '/<>/primer3/src' cp /<>/lib/libprimer3.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden make[4]: Leaving directory '/<>/primer3/src' cd gap4 && make -f /<>/./gap4/Makefile -j1 BUILD=/<> SRC=/<>/./gap4 SUBDIR=gap4 install make[4]: Entering directory '/<>/gap4' cp copy_db /<>/debian/tmp/usr/bin install gap4 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/./gap4/*.tcl /<>/./gap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap cp /<>/lib/libgap.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp /<>/./gap4/gaprc /<>/./gap4/gaprc_menu_full /<>/./gap4/gaprc_menu_mito /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/GTAGDB /<>/./gap4/NOTEDB /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/cap2rc /<>/./gap4/cap3rc /<>/./gap4/fak2rc /<>/./gap4/phraprc /<>/debian/tmp/usr/share/staden/etc cp /<>/./gap4/*.bitmap /<>/./gap4/*.gif /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/gap4' cd prefinish && make -f /<>/./prefinish/Makefile -j1 BUILD=/<> SRC=/<>/./prefinish SUBDIR=prefinish install make[4]: Entering directory '/<>/prefinish' mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/*.tcl /<>/./prefinish/*.itcl /<>/./prefinish/*.itk /<>/./prefinish/help /<>/./prefinish/args.template /<>/./prefinish/tclIndex /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/./prefinish/config.prefinish /<>/debian/tmp/usr/share/staden/tcl/prefinish cp /<>/lib/libprefinish.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden install prefinish /<>/debian/tmp/usr/bin cp /<>/./prefinish/finish_sanger /<>/./prefinish/finish_cDNA /<>/./prefinish/finish_cDNA_ends_only \ /<>/debian/tmp/usr/share/staden/scripts mkdir /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/rules/*.rule /<>/debian/tmp/usr/share/staden/tcl/prefinish/rules cp /<>/./prefinish/config.prefinish /<>/./prefinish/prefinishrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/prefinish' cd haplo && make -f /<>/./haplo/Makefile -j1 BUILD=/<> SRC=/<>/./haplo SUBDIR=haplo install make[4]: Entering directory '/<>/haplo' mkdir /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/./haplo/*.tcl /<>/./haplo/tclIndex /<>/debian/tmp/usr/share/staden/tcl/haplo cp /<>/lib/libhaplo.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp /<>/./haplo/haplorc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/haplo' cd eba && make -f /<>/./eba/Makefile -j1 BUILD=/<> SRC=/<>/./eba SUBDIR=eba install make[4]: Entering directory '/<>/eba' cp eba /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/eba' cd init_exp && make -f /<>/./init_exp/Makefile -j1 BUILD=/<> SRC=/<>/./init_exp SUBDIR=init_exp install make[4]: Entering directory '/<>/init_exp' cp init_exp /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/init_exp' cd get_scf_field && make -f /<>/./get_scf_field/Makefile -j1 BUILD=/<> SRC=/<>/./get_scf_field SUBDIR=get_scf_field install make[4]: Entering directory '/<>/get_scf_field' cp get_scf_field /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/get_scf_field' cd spin && make -f /<>/./spin/Makefile -j1 BUILD=/<> SRC=/<>/./spin SUBDIR=spin install make[4]: Entering directory '/<>/spin' install spin /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/./spin/*.tcl /<>/./spin/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin cp /<>/lib/libspin.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp /<>/./spin/*.wts /<>/./spin/niprc /<>/./spin/siprc /<>/./spin/spinrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin' cd vector_clip && make -f /<>/./vector_clip/Makefile -j1 BUILD=/<> SRC=/<>/./vector_clip SUBDIR=vector_clip install make[4]: Entering directory '/<>/vector_clip' cp vector_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/vector_clip' cd tracediff && make -f /<>/./tracediff/Makefile -j1 BUILD=/<> SRC=/<>/./tracediff SUBDIR=tracediff install make[4]: Entering directory '/<>/tracediff' cp tracediff /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/tracediff' cd screen_seq && make -f /<>/./screen_seq/Makefile -j1 BUILD=/<> SRC=/<>/./screen_seq SUBDIR=screen_seq install make[4]: Entering directory '/<>/screen_seq' cp screen_seq /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/screen_seq' cd qclip && make -f /<>/./qclip/Makefile -j1 BUILD=/<> SRC=/<>/./qclip SUBDIR=qclip install make[4]: Entering directory '/<>/qclip' cp qclip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/qclip' cd polyA_clip && make -f /<>/./polyA_clip/Makefile -j1 BUILD=/<> SRC=/<>/./polyA_clip SUBDIR=polyA_clip install make[4]: Entering directory '/<>/polyA_clip' cp polyA_clip /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/polyA_clip' cd stops && make -f /<>/./stops/Makefile -j1 BUILD=/<> SRC=/<>/./stops SUBDIR=stops install make[4]: Entering directory '/<>/stops' cp stops /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/stops' cd pregap4 && make -f /<>/./pregap4/Makefile -j1 BUILD=/<> SRC=/<>/./pregap4 SUBDIR=pregap4 install make[4]: Entering directory '/<>/pregap4' /<>/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /<>/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' install pregap4 /<>/debian/tmp/usr/bin/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4 cp /<>/./pregap4/*.tcl /<>/./pregap4/widget_licence /<>/./pregap4/tclIndex /<>/debian/tmp/usr/share/staden/tcl/pregap4 mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates mkdir /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/modules/*.p4m /<>/debian/tmp/usr/share/staden/tcl/pregap4/modules cp /<>/./pregap4/templates/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/templates cp: cannot stat '/<>/./pregap4/templates/*.p4t': No such file or directory make[4]: [/<>/./pregap4/Makefile:42: install] Error 1 (ignored) cp /<>/./pregap4/naming_schemes/*.p4t /<>/debian/tmp/usr/share/staden/tcl/pregap4/naming_schemes cp /<>/./pregap4/pregap4rc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/pregap4' cd make_weights && make -f /<>/./make_weights/Makefile -j1 BUILD=/<> SRC=/<>/./make_weights SUBDIR=make_weights install make[4]: Entering directory '/<>/make_weights' cp make_weights /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/make_weights' cd find_renz && make -f /<>/./find_renz/Makefile -j1 BUILD=/<> SRC=/<>/./find_renz SUBDIR=find_renz install make[4]: Entering directory '/<>/find_renz' cp find_renz /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/find_renz' cd spin_emboss && make -f /<>/./spin_emboss/Makefile -j1 BUILD=/<> SRC=/<>/./spin_emboss SUBDIR=spin_emboss install make[4]: Entering directory '/<>/spin_emboss' /<>/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /<>/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/*.tcl /<>/./spin_emboss/tclIndex /<>/debian/tmp/usr/share/staden/tcl/spin_emboss cp /<>/./spin_emboss/create_emboss_files /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp /<>/./spin_emboss/acdtcl/* /<>/debian/tmp/usr/share/staden/tcl/spin_emboss/acdtcl cp: cannot stat '/<>/./spin_emboss/acdtcl/*': No such file or directory make[4]: [/<>/./spin_emboss/Makefile:30: install] Error 1 (ignored) cp /<>/./spin_emboss/emboss_menu /<>/./spin_emboss/spin_embossrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/spin_emboss' cd copy_reads && make -f /<>/./copy_reads/Makefile -j1 BUILD=/<> SRC=/<>/./copy_reads SUBDIR=copy_reads install make[4]: Entering directory '/<>/copy_reads' mkdir /<>/debian/tmp/usr/share/staden/tcl/copy_reads install copy_reads /<>/debian/tmp/usr/bin cp /<>/./copy_reads/copy_reads.tcl /<>/./copy_reads/copy_reads_main.tcl /<>/./copy_reads/tclIndex /<>/debian/tmp/usr/share/staden/tcl/copy_reads cp /<>/lib/libcopy_reads.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp /<>/./copy_reads/copy_readsrc /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/copy_reads' cd hetins && make -f /<>/./hetins/Makefile -j1 BUILD=/<> SRC=/<>/./hetins SUBDIR=hetins install make[4]: Entering directory '/<>/hetins' cp hetins /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/hetins' cd mutscan && make -f /<>/./mutscan/Makefile -j1 BUILD=/<> SRC=/<>/./mutscan SUBDIR=mutscan install make[4]: Entering directory '/<>/mutscan' cp mutscan /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/mutscan' cd convert && make -f /<>/./convert/Makefile -j1 BUILD=/<> SRC=/<>/./convert SUBDIR=convert install make[4]: Entering directory '/<>/convert' cp staden_convert /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/convert' cd gap5 && make -f /<>/./gap5/Makefile -j1 BUILD=/<> SRC=/<>/./gap5 SUBDIR=gap5 install make[4]: Entering directory '/<>/gap5' install gap5 /<>/debian/tmp/usr/bin mkdir /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/*.tcl /<>/./gap5/tclIndex /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/../gap4/acd2tag.tcl /<>/debian/tmp/usr/share/staden/tcl/gap5 cp /<>/./gap5/gap5rc /<>/./gap5/gap5rc_menu_full /<>/debian/tmp/usr/share/staden/etc cp /<>/lib/libgap5.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/staden cp tg_index.bin /<>/debian/tmp/usr/bin install tg_index /<>/debian/tmp/usr/bin install gap5_cmd /<>/debian/tmp/usr/bin make[4]: Leaving directory '/<>/gap5' cd scripts && make -f /<>/./scripts/Makefile -j1 BUILD=/<> SRC=/<>/./scripts SUBDIR=scripts install make[4]: Entering directory '/<>/scripts' /<>/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /<>/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' cp /<>/./scripts/assemble4 /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta-split /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/fasta2exp /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/splitseq_da /<>/debian/tmp/usr/share/staden/scripts cp /<>/./scripts/staden_help /<>/debian/tmp/usr/share/staden/scripts make[4]: Leaving directory '/<>/scripts' cd data && make -f /<>/./data/Makefile -j1 BUILD=/<> SRC=/<>/./data SUBDIR=data install make[4]: Entering directory '/<>/data' /<>/./data/Makefile:9: warning: overriding recipe for target 'clean' /<>/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' mkdir /<>/debian/tmp/usr/share/staden/etc/alus cp /<>/./data/alus/* /<>/debian/tmp/usr/share/staden/etc/alus mkdir /<>/debian/tmp/usr/share/staden/etc/blast_data cp /<>/./data/blast_data/* /<>/debian/tmp/usr/share/staden/etc/blast_data mkdir /<>/debian/tmp/usr/share/staden/etc/gcodes cp /<>/./data/gcodes/* /<>/debian/tmp/usr/share/staden/etc/gcodes mkdir /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/vectors/* /<>/debian/tmp/usr/share/staden/etc/vectors cp /<>/./data/RENZYM.* /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/renzyme_bairoch /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/m13mp18_primers /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/vector_primer /<>/debian/tmp/usr/share/staden/etc cp /<>/./data/pam250 /<>/debian/tmp/usr/share/staden/etc make[4]: Leaving directory '/<>/data' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # Remove file causing lintian errors that is targeting at windows find debian -name help_windows.tcl -delete # Remove some empty directories find debian -type d -empty -name acdtcl -delete find debian -type d -empty -name templates -delete # Build system is not prepared for multi-arch mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/* /<>/debian/tmp/usr/lib rmdir /<>/debian/tmp/usr/lib/s390x-linux-gnu make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installdocs: warning: Could not parse doc-base for doc-base Document id; skipping dh_installchangelogs -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' dh_installman # due to a file name conflict spin.1 is moved out of the way #826684 mkdir -p debian/staden/usr/lib/debian-med/share/man/man1/ mv debian/staden/usr/share/man/man1/spin.1 debian/staden/usr/lib/debian-med/share/man/man1/ gzip -9 debian/staden/usr/lib/debian-med/share/man/man1/spin.1 make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms # scripts should be executable chmod a+x debian/*/usr/share/staden/tcl/gap5/contig_graph.tcl chmod a+x debian/*/usr/share/staden/tcl/gap5/gap5_cmd.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/add_stops.tcl chmod a+x debian/*/usr/share/staden/tcl/prefinish/finish_sanger.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_ext.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_galeon.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_int.tcl chmod a+x debian/*/usr/share/staden/tcl/tk_utils/help_netscape.tcl make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'staden' in '../staden_2.0.0+b11-5_s390x.deb'. dpkg-deb: building package 'staden-dbgsym' in '../staden-dbgsym_2.0.0+b11-5_s390x.deb'. dpkg-genbuildinfo --build=any -O../staden_2.0.0+b11-5_s390x.buildinfo dpkg-genchanges --build=any -O../staden_2.0.0+b11-5_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-03-18T09:52:17Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden_2.0.0+b11-5_s390x.changes: --------------------------------- Format: 1.8 Date: Wed, 13 Mar 2024 15:32:32 +0100 Source: staden Binary: staden staden-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.0.0+b11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools Closes: 1066508 Changes: staden (2.0.0+b11-5) unstable; urgency=medium . * Team upload. * Mark staden-commen as Multi-Arch: foreign * Standards-Version: 4.5.0 * Correctly detect 64bit host architectures * d/patches/use_mkstemp_instead_of_tmpnam.patch: add missing stdlib include. Closes: #1066508 * d/control: libncurses-dev replaced libncurses5-dev. * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Update lintian override info format in d/staden-common.lintian-overrides on line 2. * watch file standard 4 (routine-update) * d/upstream/metadata: add links to Sourceforge issue tracker, VCS Checksums-Sha1: e8cd0c936fd6e2d4ac6e52ed7f75c1c3217e2a5f 4440336 staden-dbgsym_2.0.0+b11-5_s390x.deb 4a755575252f4af3230a6826976813e69dad7e59 8377 staden_2.0.0+b11-5_s390x.buildinfo fb6d4b2369464848533db7683818eda7a81011c7 1669428 staden_2.0.0+b11-5_s390x.deb Checksums-Sha256: 15d4ac792c053eb148a1881331b38266bd82c347e21ab443ee4bb3c333672a04 4440336 staden-dbgsym_2.0.0+b11-5_s390x.deb 708f89a9dfd33ea43f9fbdd34bcf2247b2cb70c8d2f2877b14d9a3737978068b 8377 staden_2.0.0+b11-5_s390x.buildinfo b9a6f63295d018ce7cd79a105003dffb2e239c4553967092a20352127d6af5dc 1669428 staden_2.0.0+b11-5_s390x.deb Files: 3a30a30d3089910c1bb8e84ececb0e43 4440336 debug optional staden-dbgsym_2.0.0+b11-5_s390x.deb 5815a51dfcbb0b00cfd7cb32a81c3dbe 8377 science optional staden_2.0.0+b11-5_s390x.buildinfo 94750a8ade68fdad9c1cd2667d5deb1e 1669428 science optional staden_2.0.0+b11-5_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: staden Binary: staden staden-dbgsym Architecture: s390x Version: 2.0.0+b11-5 Checksums-Md5: 3a30a30d3089910c1bb8e84ececb0e43 4440336 staden-dbgsym_2.0.0+b11-5_s390x.deb 94750a8ade68fdad9c1cd2667d5deb1e 1669428 staden_2.0.0+b11-5_s390x.deb Checksums-Sha1: e8cd0c936fd6e2d4ac6e52ed7f75c1c3217e2a5f 4440336 staden-dbgsym_2.0.0+b11-5_s390x.deb fb6d4b2369464848533db7683818eda7a81011c7 1669428 staden_2.0.0+b11-5_s390x.deb Checksums-Sha256: 15d4ac792c053eb148a1881331b38266bd82c347e21ab443ee4bb3c333672a04 4440336 staden-dbgsym_2.0.0+b11-5_s390x.deb b9a6f63295d018ce7cd79a105003dffb2e239c4553967092a20352127d6af5dc 1669428 staden_2.0.0+b11-5_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 18 Mar 2025 09:52:16 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.7), base-passwd (= 3.6.6), bash (= 5.2.37-1.1+b1), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1+b1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-2), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), itcl3 (= 3.4.4-3), itcl3-dev (= 3.4.4-3), itk3 (= 3.4.2-5), itk3-dev (= 3.4.2-5), iwidgets4 (= 4.1.1-3), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-6), libc-dev-bin (= 2.41-6), libc6 (= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-2), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.12.1-3), libcurl4-gnutls-dev (= 8.12.1-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.0-1), libexpat1-dev (= 2.7.0-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig-dev (= 2.15.0-2.1), libfontconfig1 (= 2.15.0-2.1), libfontconfig1-dev (= 2.15.0-2.1), libfreetype-dev (= 2.13.3+dfsg-1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.1-1), libhtscodecs-dev (= 1.6.1-2), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 14.2.0-19), libicu76 (= 76.1-3), libidn2-0 (= 2.3.8-1), libidn2-dev (= 2.3.8-1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.9+dfsg-2), libldap2 (= 2.6.9+dfsg-2), liblsan0 (= 14.2.0-19), liblzma-dev (= 5.6.4-1), liblzma5 (= 5.6.4-1), libmagic-mgc (= 1:5.46-2), libmagic1t64 (= 1:5.46-2), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncurses-dev (= 6.5+20250216-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.47-1.1), libpng16-16t64 (= 1.6.47-1.1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 14.2.0-19), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.5.5-2+b1), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.40.4-5), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstaden-read-dev (= 1.15.0-1.1+b2), libstaden-read14t64 (= 1.15.0-1.1+b2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.4-3), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtcl8.6 (= 8.6.16+dfsg-1), libtinfo6 (= 6.5+20250216-2), libtk8.6 (= 8.6.16-1), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.4-3), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-5), libx11-6 (= 2:1.8.10-2), libx11-data (= 2:1.8.10-2), libx11-dev (= 2:1.8.10-2), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxft-dev (= 2.3.6-1+b4), libxft2 (= 2.3.6-1+b4), libxml2 (= 2.12.7+dfsg+really2.9.14-0.3+b1), libxrender-dev (= 1:0.9.10-1.1+b4), libxrender1 (= 1:0.9.10-1.1+b4), libxss-dev (= 1:1.2.3-1+b3), libxss1 (= 1:1.2.3-1+b3), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.19-1), m4 (= 1.4.19-7), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.4.1-1), patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tcl (= 8.6.16), tcl-dev (= 8.6.16), tcl8.6 (= 8.6.16+dfsg-1), tcl8.6-dev (= 8.6.16+dfsg-1), tk (= 8.6.16), tk-dev (= 8.6.16), tk8.6 (= 8.6.16-1), tk8.6-dev (= 8.6.16-1), tklib (= 0.9-1), tzdata (= 2025a-2), util-linux (= 2.40.4-5), uuid-dev (= 2.40.4-5), x11-common (= 1:7.7+24), x11proto-core-dev (= 2024.1-1), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.4-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1710340352" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ staden-dbgsym_2.0.0+b11-5_s390x.deb ----------------------------------- new Debian package, version 2.0. size 4440336 bytes: control archive=2128 bytes. 1728 bytes, 12 lines control 3686 bytes, 35 lines md5sums Package: staden-dbgsym Source: staden Version: 2.0.0+b11-5 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5586 Depends: staden (= 2.0.0+b11-5) Section: debug Priority: optional Description: debug symbols for staden Build-Ids: 042c9f6ff3c7a256abf746b1945cc7165515e5d0 05a8a3979ca7fcc7bcaaa70bee390a00783ba935 0a8b4d6b07794f08bd6c4f13452f4836b1dfafa3 0e1db6da22ee86155f1f0ede32dcd98bc824c0e8 18f9ea0dd9167d5acf63f821a24d371cc99865d4 3c573f7f3200752307fc89eb479faeafff6afb29 3cefeb3721f6568f055d90ef41e8a800be976b6f 3e45f0a5c1174b8de226e223f9e36a3e08ed4215 5bb9c072258530435fd2058a144778cb6f521d6f 686a8cc25eed009e87bdbecec76b691f48ceb362 69ecaad16b698f4a7a2323c852e8db4680dd6927 750e9fce4afc52d9c22839c4197eceab1b0c562e 7e4a42c77d566cec132053a754bb8f020c2d5028 7ea3b68b83b187cabf88875a6d6d0d4d0b5cae12 8572f88f8be5c8eacaf20ffa9d7978d1740c548b 8da2ff6964db15c0106f52417a88db9e476a9c2e 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14:32 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 290648 2024-03-13 14:32 ./usr/lib/debug/.build-id/f9/36a68fb20198c495e140ae0f4a3aead2dc80b3.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 68904 2024-03-13 14:32 ./usr/lib/debug/.dwz/s390x-linux-gnu/staden.debug drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/share/doc/staden-dbgsym -> staden staden_2.0.0+b11-5_s390x.deb ---------------------------- new Debian package, version 2.0. size 1669428 bytes: control archive=3132 bytes. 2508 bytes, 47 lines control 3948 bytes, 62 lines md5sums Package: staden Version: 2.0.0+b11-5 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5031 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libpng16-16t64 (>= 1.6.46), libstaden-read14t64 (>= 1.14.12), libstdc++6 (>= 5), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, zlib1g (>= 1:1.1.4), staden-common (= 2.0.0+b11-5), staden-io-lib-utils, tklib Recommends: med-config Section: science Priority: optional Homepage: https://sourceforge.net/projects/staden/ Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. drwxr-xr-x root/root 0 2024-03-13 14:32 ./ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/bin/ -rwxr-xr-x root/root 321 2020-02-19 15:32 ./usr/bin/gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/gap5 -> gap4 lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/pregap4 -> gap4 -rwxr-xr-x root/root 642 2020-02-19 15:32 ./usr/bin/staden lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/bin/trev -> gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/bin/spin -> ../../../bin/gap4 drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 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./usr/share/applications/pregap4.desktop -rw-r--r-- root/root 241 2020-02-19 15:32 ./usr/share/applications/trev.desktop drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 833 2020-02-19 15:32 ./usr/share/bash-completion/completions/staden drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/doc/staden/ -rw-r--r-- root/root 2159 2020-02-19 15:32 ./usr/share/doc/staden/README.Debian -rw-r--r-- root/root 900 2024-03-13 14:32 ./usr/share/doc/staden/changelog.Debian.gz -rw-r--r-- root/root 197205 2016-04-25 10:40 ./usr/share/doc/staden/changelog.gz -rw-r--r-- root/root 9591 2024-03-13 14:32 ./usr/share/doc/staden/copyright drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/man/man1/ -rw-r--r-- root/root 1007 2024-03-13 14:32 ./usr/share/man/man1/gap4.1.gz -rw-r--r-- root/root 961 2024-03-13 14:32 ./usr/share/man/man1/gap5.1.gz -rw-r--r-- root/root 682 2024-03-13 14:32 ./usr/share/man/man1/pregap4.1.gz -rw-r--r-- root/root 826 2024-03-13 14:32 ./usr/share/man/man1/trev.1.gz drwxr-xr-x root/root 0 2024-03-13 14:32 ./usr/share/staden/ -rw-r--r-- root/root 4107 2020-02-19 15:32 ./usr/share/staden/icon4bl.svg lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1458 B] Get:5 copy:/<>/apt_archive ./ Packages [1537 B] Fetched 3610 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: Execute external solver... ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libappstream5 : Depends: libcurl3t64-gnutls (>= 7.63.0) but it is not going to be installed Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:s390x : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 146 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 16 Job: staden_2.0.0+b11-5 Lintian: error Machine Architecture: amd64 Package: staden Package-Time: 173 Source-Version: 2.0.0+b11-5 Space: n/a Status: successful Version: 2.0.0+b11-5 -------------------------------------------------------------------------------- Finished at 2025-03-18T09:52:17Z Build needed 00:02:53, no disk space