sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | tigr-glimmer 3.02b-2 (armhf) Sat, 26 Oct 2019 11:26:28 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-2 Source Version: 3.02b-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2c4e573e-1c10-4856-b0cd-0f7894682ebb' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wfcqvY/resolver-bGzcIU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-26-0815.41.pdiff [12.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-26-0815.41.pdiff [12.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-26-0815.41.pdiff [23.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-26-0815.41.pdiff [23.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7979 kB] Fetched 8209 kB in 2s (4072 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5660 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (dsc) [2071 B] Get:2 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (tar) [5638 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (diff) [19.5 kB] Fetched 5660 kB in 0s (56.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wfcqvY/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wfcqvY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), docbook-to-man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11~), docbook-to-man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [502 B] Fetched 1870 B in 0s (90.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libosp5 libpipeline1 libsigsegv2 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db opensp po-debconf sensible-utils sgml-base sgml-data ucf xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libosp5 libpipeline1 libsigsegv2 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db opensp po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils sgml-base sgml-data ucf xml-core 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 63.6 MB of archives. After this operation, 246 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b5 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 sgml-base all 1.29.1 [15.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-12 [193 kB] Get:11 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http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.33.1-2 [2721 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-8cross1 [193 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [6808 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-1cross7 [1122 kB] Get:30 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amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:57 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amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.2-1 [1316 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 sgml-data all 2.0.11 [179 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 docbook all 4.5-6 [129 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libosp5 amd64 1.5.2-13+b1 [948 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 opensp amd64 1.5.2-13+b1 [449 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 docbook-to-man amd64 1:2.0.0-42+b1 [76.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.2.1-12 [37.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-2 [2341 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-12 [369 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.2.1-12 [6868 B] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.3.7-1 [977 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-2 [2141 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.2.1-12 [75.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.2.1-12 [431 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.2.1-12 [113 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-12 [664 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-12 [1748 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.6 MB in 1s (69.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14988 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-1_amd64.deb ... Unpacking man-db (2.9.0-1) ... 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Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.29-1cross7) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up linux-libc-dev:armhf (5.3.7-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-8cross1) ... Setting up libosp5 (1.5.2-13+b1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.2.9-2cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.29.1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.33.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b5) ... Setting up gcc-9-base:armhf (9.2.1-12) ... Setting up libgomp1-armhf-cross (9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.1-1) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libc6-dev-armhf-cross (2.29-1cross7) ... Setting up m4 (1.4.18-2) ... Setting up opensp (1.5.2-13+b1) ... Setting up libatomic1-armhf-cross (9.2.1-8cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-8cross1) ... Setting up libubsan1-armhf-cross (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libgcc1:armhf (1:9.2.1-12) ... Setting up debhelper (12.7.1) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.29-2) ... Setting up dh-strip-nondeterminism (1.6.1-1) ... Setting up libc6-dev:armhf (2.29-2) ... Setting up libstdc++6:armhf (9.2.1-12) ... Setting up libgomp1:armhf (9.2.1-12) ... Setting up libasan5:armhf (9.2.1-12) ... Setting up libatomic1:armhf (9.2.1-12) ... Setting up libubsan1:armhf (9.2.1-12) ... Setting up libgcc-9-dev:armhf (9.2.1-12) ... Setting up libstdc++-9-dev:armhf (9.2.1-12) ... Processing triggers for libc-bin (2.29-2) ... Processing triggers for sgml-base (1.29.1) ... Setting up sgml-data (2.0.11) ... Processing triggers for sgml-base (1.29.1) ... Setting up docbook (4.5-6) ... Processing triggers for sgml-base (1.29.1) ... Setting up docbook-to-man (1:2.0.0-42+b1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-12 gcc-8_8.3.0-23 gcc-9_9.2.1-12 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-12 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-12 libstdc++6-armhf-cross_9.2.1-8cross1 linux-libc-dev_5.3.7-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.33.1-2 binutils-arm-linux-gnueabihf_2.33.1-2 binutils-common_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-12 cpp-9-arm-linux-gnueabihf_9.2.1-8cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 docbook_4.5-6 docbook-to-man_1:2.0.0-42+b1 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-12 g++-9-arm-linux-gnueabihf_9.2.1-8cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-12 gcc-9-arm-linux-gnueabihf_9.2.1-8cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-8cross1 gcc-9-base_9.2.1-12 gcc-9-cross-base_9.2.1-8cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-12 libasan5-armhf-cross_9.2.1-8cross1 libatomic1_9.2.1-12 libatomic1-armhf-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-armhf-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-armhf-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1 libcc1-0_9.2.1-12 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.1-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-12 libgcc-9-dev-armhf-cross_9.2.1-8cross1 libgcc1_1:9.2.1-12 libgcc1-armhf-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.2-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-12 libgomp1-armhf-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-12 liblocale-gettext-perl_1.07-3+b5 liblsan0_9.2.1-12 liblz4-1_1.9.1-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libosp5_1.5.2-13+b1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-8 libpipeline1_1.5.1-2 libquadmath0_9.2.1-12 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-12 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-12 libstdc++6-armhf-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-12 libubsan1_9.2.1-12 libubsan1-armhf-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.7-1 linux-libc-dev-armhf-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 opensp_1.5.2-13+b1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-8 perl-base_5.30.0-8 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-8 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29.1 sgml-data_2.0.11 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xml-core_0.18+nmu1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), docbook-to-man Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 8cab678b1a7348e7b5f708d8ab19c57d60e56050 19536 tigr-glimmer_3.02b-2.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 5bc26075f06f78281c063665bc6c87222d25d9478fab1bfd01117ea714808191 19536 tigr-glimmer_3.02b-2.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz 5183670188f777523611c4626d0ca96b 19536 tigr-glimmer_3.02b-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlsJXicRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBNA/+NYc2n8TjKxBIizgYiUp9Mg6Izs6BafMk JMaTO8RYYhnZpBOF1c4M+GWQJ/MYelOYKQajF0KdGP6Bv94XYclIcWJC/Wt+68sN KwgIWQKU81Ue1REPcn+S3EBzGFXZ8Fb82vDWptejRWGYfndR98gQTG2+PP2rBZHP URHTGMvBON+gEJyyxaH7rJohlMmskLpeKUU/gPxqzmAlIPWXS0TLlzzOn2bN+gfg uAfBC3lKvQz6JY884oBfghT4pzumfF9ryK0Fmz7gu0EjrwSeF+D2wVAq696/Qrao tYPsWYvdlut/LQqSY+FHRXmxiUeFTA0r72DyNgKOAEfeFbt+blvxf+eupvAMpEOR 1uibQKb0yFGsTXMNKoOKYygi2ixupXcOTpirpNPLVIwvbaCHNvJ/qAZ5ZccX5bk1 pw3Fu+yvMy2oSbIMo5dqX21A8B/39O0tWIRxxxK3O7QM44RVq+e6Ohnpq8R6KQrx qjiZw8h57xDv9NfeO0HJNRftrTJaUNdseqImFaXVOADdrFgipn8iN9YfZa2fTUWo fj2udJlGJsfqz4B8MMkhpBoedwKXSsPsc1vIZozRq08F2DQ9K2DXXFL5TEEhmI7D Lq4LEoMKVEMGm1++gx/AxXTQee8Ouh+oDWHbNp/txoxSVXiKhOThfzsxdCD7+edb xUZi14u/dqM= =5QV0 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat May 26 13:16:23 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-2.dsc dpkg-source: info: extracting tigr-glimmer in /<> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2c4e573e-1c10-4856-b0cd-0f7894682ebb SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean debian/glimmer2_mans/tigr-anomaly.1 debian/glimmer2_mans/tigr-build-icm.1 debian/glimmer2_mans/tigr-extract.1 debian/glimmer2_mans/tigr-glimmer3.1 debian/glimmer2_mans/tigr-long-orfs.1 debian/glimmer2_mans/tigr-run-glimmer3.1 cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f * Make Target is clean ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' docbook-to-man debian/glimmer2_mans/tigr-anomaly.sgml > debian/glimmer2_mans/tigr-anomaly.1 /usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12:E: end tag for "REFSECT1" which is not finished /usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12: open elements: REFENTRY REFSECT1[1] (TITLE[1]) docbook-to-man debian/glimmer2_mans/tigr-build-icm.sgml > debian/glimmer2_mans/tigr-build-icm.1 /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17:E: document type does not allow element "TITLE" here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15:E: document type does not allow element "MANVOLNUM" here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "TITLE" omitted, but OMITTAG NO was specified /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "REFENTRYTITLE" omitted, but OMITTAG NO was specified /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1]) Warning: transpec not found for TITLE docbook-to-man debian/glimmer2_mans/tigr-extract.sgml > debian/glimmer2_mans/tigr-extract.1 docbook-to-man debian/glimmer2_mans/tigr-glimmer3.sgml > debian/glimmer2_mans/tigr-glimmer3.1 docbook-to-man debian/glimmer2_mans/tigr-long-orfs.sgml > debian/glimmer2_mans/tigr-long-orfs.1 docbook-to-man debian/glimmer2_mans/tigr-run-glimmer3.sgml > debian/glimmer2_mans/tigr-run-glimmer3.1 dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from delcher.hh:32, from gene.cc:10: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = DNA_vect_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from delcher.hh:32, from gene.cc:10: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘bool PWM_t::Read(FILE*)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘PWM_t& PWM_t::operator=(const PWM_t&)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from icm.hh:15, from icm.cc:16: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from icm.hh:15, from icm.cc:16: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘void ICM_t::Cumulative_Score(const string&, std::vector&, int) const’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ################### libGLMicm.a ##################### ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Integerize_Scores(std::vector, int, std::vector, std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 431 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Parse_Command_Line(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Start_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 431 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Gene_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Set_Start_And_Stop_Codons()’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Score_Orfs(std::vector&, std::vector&, FILE*)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Gene_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ anomaly ++++++++++++++++++++++ ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ ++++++++++++++++++++ test ++++++++++++++++++++++ make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ ++++++++++++++++++++ extract ++++++++++++++++++++++ ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ ++++++++++++++++++++ uncovered ++++++++++++++++++++++ ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ make[3]: Leaving directory '/<>/src/Util' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_perl: /usr/lib/arm-linux-gnueabihf/perl/cross-config-5.30.0/Config.pm does not exist (missing build dependency on perl-xs-dev?) dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-profile contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-score contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-icm contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/anomaly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/long-orfs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/uncovered contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/multi-extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/glimmer3 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/score-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/window-acgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/start-codon-distrib contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-2_armhf.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-2_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../tigr-glimmer_3.02b-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-10-26T11:27:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-2_armhf.changes: ----------------------------------- Format: 1.8 Date: Sat, 26 May 2018 15:08:21 +0200 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 3.02b-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 900114 Changes: tigr-glimmer (3.02b-2) unstable; urgency=medium . [ Helmut Grohne ] * Fix FTCBFS: Use dh_auto_build. (Closes: #900114) . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file Checksums-Sha1: 370b2f7758545617cc9132eedd83649f70ee2443 2277568 tigr-glimmer-dbgsym_3.02b-2_armhf.deb 8cdca6322f6e3d2cf7184656f79837dff8f48428 4860 tigr-glimmer_3.02b-2_armhf.buildinfo 2bb246a8c25fb6847a7ec75e64bfe066b5947a64 261692 tigr-glimmer_3.02b-2_armhf.deb Checksums-Sha256: ac3a0085c3b6c09651b51ecc2e8c480798b5640e2c2a9a446fede42632ad9619 2277568 tigr-glimmer-dbgsym_3.02b-2_armhf.deb bca6ec9296974dd0dcd4bb43ed5b4980ec039e1d8359e02bbd866dd3fd53d4f6 4860 tigr-glimmer_3.02b-2_armhf.buildinfo 142a68c76e40a2ea0e71ab1454f528ac4b05d5fb54c286ddb86d7da12eca843f 261692 tigr-glimmer_3.02b-2_armhf.deb Files: 84a35d650c6a5296b3eb30ea55fffb42 2277568 debug optional tigr-glimmer-dbgsym_3.02b-2_armhf.deb 2daac8b1289fb3f96dd0308d90be4b5b 4860 science optional tigr-glimmer_3.02b-2_armhf.buildinfo 8f23cfa1a8cdf0f67e8c40d3ac3f6072 261692 science optional tigr-glimmer_3.02b-2_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer Architecture: armhf Version: 3.02b-2 Checksums-Md5: 84a35d650c6a5296b3eb30ea55fffb42 2277568 tigr-glimmer-dbgsym_3.02b-2_armhf.deb 8f23cfa1a8cdf0f67e8c40d3ac3f6072 261692 tigr-glimmer_3.02b-2_armhf.deb Checksums-Sha1: 370b2f7758545617cc9132eedd83649f70ee2443 2277568 tigr-glimmer-dbgsym_3.02b-2_armhf.deb 2bb246a8c25fb6847a7ec75e64bfe066b5947a64 261692 tigr-glimmer_3.02b-2_armhf.deb Checksums-Sha256: ac3a0085c3b6c09651b51ecc2e8c480798b5640e2c2a9a446fede42632ad9619 2277568 tigr-glimmer-dbgsym_3.02b-2_armhf.deb 142a68c76e40a2ea0e71ab1454f528ac4b05d5fb54c286ddb86d7da12eca843f 261692 tigr-glimmer_3.02b-2_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 26 Oct 2019 11:27:35 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.33.1-2), binutils-common (= 2.33.1-2), binutils-x86-64-linux-gnu (= 2.33.1-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-23), cpp-9 (= 9.2.1-12), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.1-1), diffutils (= 1:3.7-3), docbook (= 4.5-6), docbook-to-man (= 1:2.0.0-42+b1), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-12), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-23), gcc-8-base (= 8.3.0-23), gcc-9 (= 9.2.1-12), gcc-9-base (= 9.2.1-12), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-12), libatomic1 (= 9.2.1-12), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.33.1-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-2), libc-dev-bin (= 2.29-2), libc6 (= 2.29-2), libc6-dev (= 2.29-2), libcap-ng0 (= 0.7.9-2.1), libcc1-0 (= 9.2.1-12), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.1-1), libgcc-8-dev (= 8.3.0-23), libgcc-9-dev (= 9.2.1-12), libgcc1 (= 1:9.2.1-12), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.2-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-12), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-12), liblsan0 (= 9.2.1-12), liblz4-1 (= 1.9.1-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-23), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libosp5 (= 1.5.2-13+b1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-8), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-12), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-12), libstdc++6 (= 9.2.1-12), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-7), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-12), libubsan1 (= 9.2.1-12), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.3.7-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.9.0-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), opensp (= 1.5.2-13+b1), patch (= 2.7.6-6), perl (= 5.30.0-8), perl-base (= 5.30.0-8), perl-modules-5.30 (= 5.30.0-8), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sgml-base (= 1.29.1), sgml-data (= 2.0.11), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xml-core (= 0.18+nmu1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1527340101" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer-dbgsym_3.02b-2_armhf.deb ------------------------------------- new Debian package, version 2.0. size 2277568 bytes: control archive=1188 bytes. 924 bytes, 12 lines control 1484 bytes, 14 lines md5sums Package: tigr-glimmer-dbgsym Source: tigr-glimmer Version: 3.02b-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2474 Depends: tigr-glimmer (= 3.02b-2) Section: debug Priority: optional Description: debug symbols for tigr-glimmer Build-Ids: 086b3e067a3c7d29c4e120ccdb9caab47b271ba8 13a016bfbfffd39e4e003053ee9aefd15d9db729 1b8073452099931fdf9784e51bb4097859fc83dc 22ba37a6479c6cc7126f5700613dbe0affc7db59 2f0310eee1d146ba71ca0606d9093edaef64de80 35a653eba5426f0990d4cbe3a8215d188ed8f169 5bb5947ca35ae9209e72ca393c930575a1f1ff1b 65468b8621bd8bfb6b123ce5fb2233bfc66786e9 6d7ebcaf20ec9fb4b5d2cc1a15e1945c2d69ca6f 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./usr/lib/debug/.build-id/93/938fbd236d2824b548690a86d84a21f5238387.debug drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 99512 2018-05-26 13:08 ./usr/lib/debug/.build-id/dc/15bfa4d6370def896a0c492078d6a311bc35b3.debug drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer-dbgsym -> tigr-glimmer tigr-glimmer_3.02b-2_armhf.deb ------------------------------ new Debian package, version 2.0. size 261692 bytes: control archive=1668 bytes. 749 bytes, 17 lines control 2390 bytes, 33 lines md5sums Package: tigr-glimmer Version: 3.02b-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 620 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2018-05-26 13:08 ./ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/bin/ -rwxr-xr-x root/root 412 2018-05-26 13:08 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2018-05-26 13:08 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 26124 2018-05-26 13:08 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 38428 2018-05-26 13:08 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 42700 2018-05-26 13:08 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 22092 2018-05-26 13:08 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 26576 2018-05-26 13:08 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 84136 2018-05-26 13:08 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 43092 2018-05-26 13:08 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 38412 2018-05-26 13:08 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 9688 2018-05-26 13:08 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 17980 2018-05-26 13:08 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 13884 2018-05-26 13:08 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 957 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 1469 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1059 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-26 13:08 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2018-05-26 13:08 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2018-05-26 13:08 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2018-05-26 13:08 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2018-05-26 13:08 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2018-05-26 13:08 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2018-05-26 13:08 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2018-05-26 13:08 ./usr/share/man/man1/tigr-run-glimmer3.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [542 B] Get:5 copy:/<>/apt_archive ./ Packages [632 B] Fetched 2137 B in 0s (112 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8555 kB of archives. After this operation, 24.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.30.1-1 [649 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 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[26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b2 [16.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b6 [33.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.29.0 [1279 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8555 kB in 0s (29.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21361 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.004004-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 33016 Build-Time: 37 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 19 Job: tigr-glimmer_3.02b-2 Lintian: pass Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 68 Source-Version: 3.02b-2 Space: 33016 Status: successful Version: 3.02b-2 -------------------------------------------------------------------------------- Finished at 2019-10-26T11:27:36Z Build needed 00:01:08, 33016k disk space