sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | tigr-glimmer 3.02b-2 (armhf) Thu, 06 Feb 2020 09:38:29 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-2 Source Version: 3.02b-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-98d11ab2-706c-4f95-9d63-a7c0794f94bf' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-HrRcdJ/resolver-vpbxu6' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-06-0809.45.pdiff [4058 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-06-0809.45.pdiff [4058 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-06-0809.45.pdiff [6256 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-06-0809.45.pdiff [6256 B] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7981 kB] Fetched 8190 kB in 2s (4329 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5660 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (dsc) [2071 B] Get:2 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (tar) [5638 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-2 (diff) [19.5 kB] Fetched 5660 kB in 0s (50.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-HrRcdJ/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-HrRcdJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), docbook-to-man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11~), docbook-to-man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [503 B] Fetched 1871 B in 0s (137 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libosp5 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db opensp po-debconf sensible-utils sgml-base sgml-data ucf xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf libstdc++-9-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libosp5 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db opensp po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils sgml-base sgml-data ucf xml-core 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 79.0 MB of archives. After this operation, 315 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 sgml-base all 1.29.1 [15.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10-20200204-1 [195 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-28 [195 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.34-2 [2748 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-28 [1697 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-28 [10.7 MB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-21cross1 [194 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [6813 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-9cross1 [1110 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-21cross1 [37.3 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-21cross1 [73.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-21cross1 [6624 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-21cross1 [362 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-21cross1 [392 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-21cross1 [112 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-21cross1 [664 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7159 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.4.8-1cross1 [1128 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-9cross1 [2110 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-21cross1 [1720 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7390 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:57 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amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 sgml-data all 2.0.11 [179 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 docbook all 4.5-6 [129 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libosp5 amd64 1.5.2-13+b1 [948 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 opensp amd64 1.5.2-13+b1 [449 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 docbook-to-man amd64 1:2.0.0-42+b1 [76.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10-20200204-1 [36.4 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.10-10 [101 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-10 [2329 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-28 [369 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10-20200204-1 [6916 B] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.4.13-1 [1040 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.10-10 [120 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-10 [2127 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10-20200204-1 [83.9 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10-20200204-1 [420 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10-20200204-1 [116 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-28 [663 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-28 [1753 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.0 MB in 1s (63.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up file (1:5.38-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-21cross1) ... Setting up libosp5 (1.5.2-13+b1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:armhf (10-20200204-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.4.8-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up sgml-base (1.29.1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.34-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armhf (9.2.1-28) ... Setting up libgomp1-armhf-cross (9.2.1-21cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-28) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libc6-dev-armhf-cross (2.29-9cross1) ... Setting up m4 (1.4.18-4) ... Setting up opensp (1.5.2-13+b1) ... Setting up libatomic1-armhf-cross (9.2.1-21cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-28) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up xml-core (0.18+nmu1) ... Setting up build-essential (12.8) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-21cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-21cross1) ... Setting up libubsan1-armhf-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libcrypt1:armhf (1:4.4.10-10) ... Setting up libgcc-s1:armhf (10-20200204-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.29-10) ... Setting up libcrypt-dev:armhf (1:4.4.10-10) ... Setting up libc6-dev:armhf (2.29-10) ... Setting up libstdc++6:armhf (10-20200204-1) ... Setting up debhelper (12.9) ... Setting up libgomp1:armhf (10-20200204-1) ... Setting up libasan5:armhf (9.2.1-28) ... Setting up libatomic1:armhf (10-20200204-1) ... Setting up libubsan1:armhf (10-20200204-1) ... Setting up libgcc-9-dev:armhf (9.2.1-28) ... Setting up libstdc++-9-dev:armhf (9.2.1-28) ... Processing triggers for libc-bin (2.29-10) ... Processing triggers for sgml-base (1.29.1) ... Setting up sgml-data (2.0.11) ... Processing triggers for sgml-base (1.29.1) ... Setting up docbook (4.5-6) ... Processing triggers for sgml-base (1.29.1) ... Setting up docbook-to-man (1:2.0.0-42+b1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-28 gcc-8_8.3.0-28 gcc-9_9.2.1-28 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_10-20200204-1 libstdc++6-armhf-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-arm-linux-gnueabihf_2.34-2 binutils-common_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-28 cpp-9_9.2.1-28 cpp-9-arm-linux-gnueabihf_9.2.1-21cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 docbook_4.5-6 docbook-to-man_1:2.0.0-42+b1 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-28 g++-9-arm-linux-gnueabihf_9.2.1-21cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200204-1 gcc-8_8.3.0-28 gcc-8-base_8.3.0-28 gcc-9_9.2.1-28 gcc-9-arm-linux-gnueabihf_9.2.1-21cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-21cross1 gcc-9-base_9.2.1-28 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-28 libasan5-armhf-cross_9.2.1-21cross1 libatomic1_10-20200204-1 libatomic1-armhf-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-armhf-cross_2.29-9cross1 libc6-dev_2.29-10 libc6-dev-armhf-cross_2.29-9cross1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200204-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-2 libctf0_2.34-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-28 libgcc-9-dev_9.2.1-28 libgcc-9-dev-armhf-cross_9.2.1-21cross1 libgcc-s1_10-20200204-1 libgcc1_1:10-20200204-1 libgcc1-armhf-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2 libgomp1_10-20200204-1 libgomp1-armhf-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_10-20200204-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200204-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), docbook-to-man Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 8cab678b1a7348e7b5f708d8ab19c57d60e56050 19536 tigr-glimmer_3.02b-2.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 5bc26075f06f78281c063665bc6c87222d25d9478fab1bfd01117ea714808191 19536 tigr-glimmer_3.02b-2.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz 5183670188f777523611c4626d0ca96b 19536 tigr-glimmer_3.02b-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlsJXicRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBNA/+NYc2n8TjKxBIizgYiUp9Mg6Izs6BafMk JMaTO8RYYhnZpBOF1c4M+GWQJ/MYelOYKQajF0KdGP6Bv94XYclIcWJC/Wt+68sN KwgIWQKU81Ue1REPcn+S3EBzGFXZ8Fb82vDWptejRWGYfndR98gQTG2+PP2rBZHP URHTGMvBON+gEJyyxaH7rJohlMmskLpeKUU/gPxqzmAlIPWXS0TLlzzOn2bN+gfg uAfBC3lKvQz6JY884oBfghT4pzumfF9ryK0Fmz7gu0EjrwSeF+D2wVAq696/Qrao tYPsWYvdlut/LQqSY+FHRXmxiUeFTA0r72DyNgKOAEfeFbt+blvxf+eupvAMpEOR 1uibQKb0yFGsTXMNKoOKYygi2ixupXcOTpirpNPLVIwvbaCHNvJ/qAZ5ZccX5bk1 pw3Fu+yvMy2oSbIMo5dqX21A8B/39O0tWIRxxxK3O7QM44RVq+e6Ohnpq8R6KQrx qjiZw8h57xDv9NfeO0HJNRftrTJaUNdseqImFaXVOADdrFgipn8iN9YfZa2fTUWo fj2udJlGJsfqz4B8MMkhpBoedwKXSsPsc1vIZozRq08F2DQ9K2DXXFL5TEEhmI7D Lq4LEoMKVEMGm1++gx/AxXTQee8Ouh+oDWHbNp/txoxSVXiKhOThfzsxdCD7+edb xUZi14u/dqM= =5QV0 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat May 26 13:16:23 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-2.dsc dpkg-source: info: extracting tigr-glimmer in /<> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-98d11ab2-706c-4f95-9d63-a7c0794f94bf SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean debian/glimmer2_mans/tigr-anomaly.1 debian/glimmer2_mans/tigr-build-icm.1 debian/glimmer2_mans/tigr-extract.1 debian/glimmer2_mans/tigr-glimmer3.1 debian/glimmer2_mans/tigr-long-orfs.1 debian/glimmer2_mans/tigr-run-glimmer3.1 cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f * Make Target is clean ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' docbook-to-man debian/glimmer2_mans/tigr-anomaly.sgml > debian/glimmer2_mans/tigr-anomaly.1 /usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12:E: end tag for "REFSECT1" which is not finished /usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12: open elements: REFENTRY REFSECT1[1] (TITLE[1]) docbook-to-man debian/glimmer2_mans/tigr-build-icm.sgml > debian/glimmer2_mans/tigr-build-icm.1 /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17:E: document type does not allow element "TITLE" here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15:E: document type does not allow element "MANVOLNUM" here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "TITLE" omitted, but OMITTAG NO was specified /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1]) /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "REFENTRYTITLE" omitted, but OMITTAG NO was specified /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here /usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1]) Warning: transpec not found for TITLE docbook-to-man debian/glimmer2_mans/tigr-extract.sgml > debian/glimmer2_mans/tigr-extract.1 docbook-to-man debian/glimmer2_mans/tigr-glimmer3.sgml > debian/glimmer2_mans/tigr-glimmer3.1 docbook-to-man debian/glimmer2_mans/tigr-long-orfs.sgml > debian/glimmer2_mans/tigr-long-orfs.1 docbook-to-man debian/glimmer2_mans/tigr-run-glimmer3.sgml > debian/glimmer2_mans/tigr-run-glimmer3.1 dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from delcher.hh:32, from gene.cc:10: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = DNA_vect_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from delcher.hh:32, from gene.cc:10: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘bool PWM_t::Read(FILE*)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘PWM_t& PWM_t::operator=(const PWM_t&)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from icm.hh:15, from icm.cc:16: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from icm.hh:15, from icm.cc:16: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘void ICM_t::Cumulative_Score(const string&, std::vector&, int) const’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ################### libGLMicm.a ##################### ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Integerize_Scores(std::vector, int, std::vector, std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 431 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Parse_Command_Line(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Start_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 431 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Gene_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Set_Start_And_Stop_Codons()’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void Score_Orfs(std::vector&, std::vector&, FILE*)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Gene_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /<>/src/Common/delcher.hh:32, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 977 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ anomaly ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ test ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ uncovered ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Util' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' ++++++++++++++++++++ build-icm ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' ++++++++++++++++++++ anomaly ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ test ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ uncovered ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Util' * Make Target is all ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' ++++++++++++++++++++ build-icm ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' ++++++++++++++++++++ anomaly ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ test ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ uncovered ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ /lib/libgcc_s.so.1: file not recognized: file format not recognized collect2: error: ld returned 1 exit status make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_install -a dh_install: warning: Cannot find (any matches for) "bin/*" (tried in ., debian/tmp) dh_install: warning: tigr-glimmer missing files: bin/* dh_install: error: missing files, aborting make: *** [debian/rules:18: binary-arch] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-06T09:39:34Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 20652 Build-Time: 32 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 21 Job: tigr-glimmer_3.02b-2 Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 65 Source-Version: 3.02b-2 Space: 20652 Status: attempted Version: 3.02b-2 -------------------------------------------------------------------------------- Finished at 2020-02-06T09:39:34Z Build needed 00:01:05, 20652k disk space