sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | tigr-glimmer 3.02b-5 (mipsel) Tue, 23 Jun 2020 04:22:14 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-5 Source Version: 3.02b-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8a5a213d-2c8c-4a6c-a039-1b244b575d48' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-oejw9j/resolver-bCFKl2' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-22-0800.25.pdiff [5149 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-22-1403.05.pdiff [17.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-22-2002.48.pdiff [20.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-23-0200.17.pdiff [12.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-22-0800.25.pdiff [7880 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-22-1403.05.pdiff [13.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-22-2002.48.pdiff [32.6 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-23-0200.17.pdiff [17.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-23-0200.17.pdiff [12.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-23-0200.17.pdiff [17.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7948 kB] Fetched 8277 kB in 2s (5308 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2836 kB of archives. After this operation, 1500 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 coreutils amd64 8.32-1 [2836 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2836 kB in 0s (84.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10321 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-1_amd64.deb ... Unpacking coreutils (8.32-1) over (8.30-3+b1) ... Setting up coreutils (8.32-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5660 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-5 (dsc) [2060 B] Get:2 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-5 (tar) [5638 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-5 (diff) [20.2 kB] Fetched 5660 kB in 0s (65.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-oejw9j/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-oejw9j' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [494 B] Fetched 1855 B in 0s (70.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel gnupg | gnupg2 git bzr libstdc++-9-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx libidn2-0:mipsel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 85.2 MB of archives. After this operation, 352 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.35.2-4 [129 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-1 [1315 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.1.0-4 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-14 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-5cross6 [2309 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-14 [1701 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-14 [10.7 MB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.30-2cross1 [1199 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.19-1cross1 [1166 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.30-2cross1 [2274 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-2 [8610 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.1.0-4 [46.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-8 [2422 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.1.0-4 [6712 B] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.6.14-2 [1108 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-8 [2271 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.1.0-4 [92.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-14 [222 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.1.0-4 [434 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-14 [1717 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.2 MB in 1s (116 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10323 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.35.2-4_amd64.deb ... Unpacking bsdextrautils (2.35.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-1_amd64.deb ... Unpacking man-db (2.9.3-1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../05-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up gcc-10-base:mipsel (10.1.0-4) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up binutils-mipsel-linux-gnu (2.34-5cross6) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mipsel (9.3.0-14) ... Setting up libstdc++-9-dev:amd64 (9.3.0-14) ... Setting up libc6-dev-mipsel-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up perl (5.30.3-4) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up g++-9 (9.3.0-14) ... Setting up libdpkg-perl (1.19.7) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10.1.0-4) ... Setting up libc6:mipsel (2.30-8) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libc6-dev:mipsel (2.30-8) ... Setting up libstdc++6:mipsel (10.1.0-4) ... Setting up libgomp1:mipsel (10.1.0-4) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mipsel (10.1.0-4) ... Setting up debhelper (13.1) ... Setting up libgcc-9-dev:mipsel (9.3.0-14) ... Setting up libstdc++-9-dev:mipsel (9.3.0-14) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-14 gcc-9_9.3.0-14 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-14 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.1.0-4 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.6.14-2 Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-common_2.34-8 binutils-mipsel-linux-gnu_2.34-5cross6 binutils-x86-64-linux-gnu_2.34-8 bsdextrautils_2.35.2-4 bsdutils_1:2.35.2-4 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.32-1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-14 cpp-9-mipsel-linux-gnu_9.3.0-8cross1 cpp-mipsel-linux-gnu_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-4 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-14 g++-9-mipsel-linux-gnu_9.3.0-8cross1 g++-mipsel-linux-gnu_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-4 gcc-10-cross-base-mipsen_10-20200324-1cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-14 gcc-9-base_9.3.0-14 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mipsel-linux-gnu_9.3.0-8cross1 gcc-9-mipsel-linux-gnu-base_9.3.0-8cross1 gcc-mipsel-linux-gnu_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libasan5_9.3.0-14 libatomic1_10.1.0-4 libatomic1-mipsel-cross_10-20200324-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid1_2.35.2-4 libbz2-1.0_1.0.8-3 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-dev_2.30-8 libc6-dev-mipsel-cross_2.30-2cross1 libc6-mipsel-cross_2.30-2cross1 libcap-ng0_0.7.9-2.2 libcc1-0_10.1.0-4 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-4 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.1-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-14 libgcc-9-dev-mipsel-cross_9.3.0-8cross1 libgcc-s1_10.1.0-4 libgcc-s1-mipsel-cross_10-20200324-1cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2 libgomp1_10.1.0-4 libgomp1-mipsel-cross_10-20200324-1cross1 libgpg-error0_1.38-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-4 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libquadmath0_10.1.0-4 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-4 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-14 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.1.0-4 libstdc++6-mipsel-cross_10-20200324-1cross1 libsub-override-perl_0.09-2 libsystemd0_245.6-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-4 libubsan1_10.1.0-4 libuchardet0_0.0.7-1 libudev1_245.6-1 libunistring2_0.9.10-4 libuuid1_2.35.2-4 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-2 linux-libc-dev_5.6.14-2 linux-libc-dev-mipsel-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-3 man-db_2.9.3-1 mawk_1.3.4.20200120-2 mount_2.35.2-4 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.35.2-4 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 69ad0825e3f5620d96802e0de1288bea04c3339e 20212 tigr-glimmer_3.02b-5.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 5781e3cfe06ab4fd639813b6de9014b91becdb9dd2ff4a97b0d6bf3c817a83e9 20212 tigr-glimmer_3.02b-5.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz ecacd45fca39436ae36feb90da416c9e 20212 tigr-glimmer_3.02b-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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06:41:04 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-5.dsc dpkg-source: info: extracting tigr-glimmer in /<> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8a5a213d-2c8c-4a6c-a039-1b244b575d48 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Etienne Mollier dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" delcher.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" fasta.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" gene.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" icm.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-icm.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-fixed.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" score-fixed.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ################### libGLMicm.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" anomaly.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" glimmer3.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" long-orfs.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" test.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-profile.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-score.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" extract.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" multi-extract.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" start-codon-distrib.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" uncovered.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -D__cplusplus -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" window-acgt.o ; \ fi ; : warning: "__cplusplus" redefined : note: this is the location of the previous definition ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-5_mipsel.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-5_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../tigr-glimmer_3.02b-5_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-06-23T04:23:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-5_mipsel.changes: ------------------------------------ Format: 1.8 Date: Wed, 13 May 2020 22:19:56 +0200 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 3.02b-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Etienne Mollier Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 960294 Changes: tigr-glimmer (3.02b-5) unstable; urgency=medium . * Team upload. * Reinforce Makefile error checking and increase verbosity; initial version for 3.02b-4 missed at least one point at linking time. Closes: #960294 Checksums-Sha1: 1581f51cff2f1602f10cb1db6100383b073461f1 1353308 tigr-glimmer-dbgsym_3.02b-5_mipsel.deb d5c3a4f35aa09e18c09682486c1f475455f04e14 4533 tigr-glimmer_3.02b-5_mipsel.buildinfo eb9c0aa4657578ed13401ccb6a44c1252bf5c5a0 293996 tigr-glimmer_3.02b-5_mipsel.deb Checksums-Sha256: 6ff2a0afcc6368f93ec5a940c0b01b10266231f2f454083e6baca7032c94bb07 1353308 tigr-glimmer-dbgsym_3.02b-5_mipsel.deb 6b86bd5f863c16b6fff9572066af21c41bc14977ed076edcde6bf1cdd5c07e64 4533 tigr-glimmer_3.02b-5_mipsel.buildinfo ff99b2d17bd340fa363e37a1e7e5e35708f6700b7f6b44cb290e30caefd89a28 293996 tigr-glimmer_3.02b-5_mipsel.deb Files: 41151b73c57b6d1912ee991bd1f4f34b 1353308 debug optional tigr-glimmer-dbgsym_3.02b-5_mipsel.deb e303cece64cac63a46beed3ffbb18fc7 4533 science optional tigr-glimmer_3.02b-5_mipsel.buildinfo 2b4d3a4c3403542bc9a6c8cc2ffafe47 293996 science optional tigr-glimmer_3.02b-5_mipsel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer Architecture: mipsel Version: 3.02b-5 Checksums-Md5: 41151b73c57b6d1912ee991bd1f4f34b 1353308 tigr-glimmer-dbgsym_3.02b-5_mipsel.deb 2b4d3a4c3403542bc9a6c8cc2ffafe47 293996 tigr-glimmer_3.02b-5_mipsel.deb Checksums-Sha1: 1581f51cff2f1602f10cb1db6100383b073461f1 1353308 tigr-glimmer-dbgsym_3.02b-5_mipsel.deb eb9c0aa4657578ed13401ccb6a44c1252bf5c5a0 293996 tigr-glimmer_3.02b-5_mipsel.deb Checksums-Sha256: 6ff2a0afcc6368f93ec5a940c0b01b10266231f2f454083e6baca7032c94bb07 1353308 tigr-glimmer-dbgsym_3.02b-5_mipsel.deb ff99b2d17bd340fa363e37a1e7e5e35708f6700b7f6b44cb290e30caefd89a28 293996 tigr-glimmer_3.02b-5_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 23 Jun 2020 04:23:13 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdextrautils (= 2.35.2-4), bsdutils (= 1:2.35.2-4), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.32-1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-14), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-14), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-4), gcc-9 (= 9.3.0-14), gcc-9-base (= 9.3.0-14), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-14), libatomic1 (= 10.1.0-4), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-8), libblkid1 (= 2.35.2-4), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.30-8), libc-dev-bin (= 2.30-8), libc6 (= 2.30-8), libc6-dev (= 2.30-8), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.1.0-4), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-8), libctf0 (= 2.34-8), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.252), libdebhelper-perl (= 13.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libgcc-9-dev (= 9.3.0-14), libgcc-s1 (= 10.1.0-4), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.3-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.1.0-4), libgpg-error0 (= 1.38-1), libicu67 (= 67.1-2), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-4), liblsan0 (= 10.1.0-4), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.2-4), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-4), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-4), libstdc++-9-dev (= 9.3.0-14), libstdc++6 (= 10.1.0-4), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.6-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-4), libubsan1 (= 10.1.0-4), libuchardet0 (= 0.0.7-1), libudev1 (= 245.6-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.35.2-4), libxml2 (= 2.9.10+dfsg-5+b1), linux-libc-dev (= 5.6.14-2), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-3), man-db (= 2.9.3-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-4), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1589401196" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer-dbgsym_3.02b-5_mipsel.deb -------------------------------------- new Debian package, version 2.0. size 1353308 bytes: control archive=1236 bytes. 925 bytes, 12 lines control 1573 bytes, 15 lines md5sums Package: tigr-glimmer-dbgsym Source: tigr-glimmer Version: 3.02b-5 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1563 Depends: tigr-glimmer (= 3.02b-5) Section: debug Priority: optional Description: debug symbols for tigr-glimmer Build-Ids: 07509e322d9fff44671fa25a0117016d9f9e3b9b 205ad391a0a0c08f97351ce6fdfc2004aa4e8bb6 23bd2893224290399a6d79bda36031ca7101c8f1 2dfae8742891e0c4dfa6bcb9e1a2a195e00ca888 3f437c736bc7a02ad1e273056b80ef199fdad600 5d476f997e7760ffa47563985470b40e40f1c29e 6caf1bb0968395b0ae5c60d894d0d04fc8b700c9 8322875bba25955fedef7f30f87d62ac0c948d45 8d748dc3b257e1b767b4ccaba05d300b90274dde c43d30300d41e34100f0bdcc565276c47f4e9951 ca8d09e464babe348b104b74f91b50da8fb357a9 ccb4472ebdb6bf56f676f09eb881b81d9cc43df9 ce6b3dad374371f4b7d0e7ed8e9dec56ef868a59 f045adb065ad5e30646fdafea4ede6e97215d931 drwxr-xr-x root/root 0 2020-05-13 20:19 ./ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/07/ -rw-r--r-- root/root 87316 2020-05-13 20:19 ./usr/lib/debug/.build-id/07/509e322d9fff44671fa25a0117016d9f9e3b9b.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 66544 2020-05-13 20:19 ./usr/lib/debug/.build-id/20/5ad391a0a0c08f97351ce6fdfc2004aa4e8bb6.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/23/ -rw-r--r-- root/root 86940 2020-05-13 20:19 ./usr/lib/debug/.build-id/23/bd2893224290399a6d79bda36031ca7101c8f1.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/2d/ -rw-r--r-- root/root 110992 2020-05-13 20:19 ./usr/lib/debug/.build-id/2d/fae8742891e0c4dfa6bcb9e1a2a195e00ca888.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 39396 2020-05-13 20:19 ./usr/lib/debug/.build-id/3f/437c736bc7a02ad1e273056b80ef199fdad600.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 63428 2020-05-13 20:19 ./usr/lib/debug/.build-id/5d/476f997e7760ffa47563985470b40e40f1c29e.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/6c/ -rw-r--r-- root/root 71448 2020-05-13 20:19 ./usr/lib/debug/.build-id/6c/af1bb0968395b0ae5c60d894d0d04fc8b700c9.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/83/ -rw-r--r-- root/root 57236 2020-05-13 20:19 ./usr/lib/debug/.build-id/83/22875bba25955fedef7f30f87d62ac0c948d45.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/8d/ -rw-r--r-- root/root 123768 2020-05-13 20:19 ./usr/lib/debug/.build-id/8d/748dc3b257e1b767b4ccaba05d300b90274dde.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/c4/ -rw-r--r-- root/root 17744 2020-05-13 20:19 ./usr/lib/debug/.build-id/c4/3d30300d41e34100f0bdcc565276c47f4e9951.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 385648 2020-05-13 20:19 ./usr/lib/debug/.build-id/ca/8d09e464babe348b104b74f91b50da8fb357a9.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/cc/ -rw-r--r-- root/root 75968 2020-05-13 20:19 ./usr/lib/debug/.build-id/cc/b4472ebdb6bf56f676f09eb881b81d9cc43df9.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 127532 2020-05-13 20:19 ./usr/lib/debug/.build-id/ce/6b3dad374371f4b7d0e7ed8e9dec56ef868a59.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 180040 2020-05-13 20:19 ./usr/lib/debug/.build-id/f0/45adb065ad5e30646fdafea4ede6e97215d931.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/debug/.dwz/mipsel-linux-gnu/ -rw-r--r-- root/root 74928 2020-05-13 20:19 ./usr/lib/debug/.dwz/mipsel-linux-gnu/tigr-glimmer.debug drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer-dbgsym -> tigr-glimmer tigr-glimmer_3.02b-5_mipsel.deb ------------------------------- new Debian package, version 2.0. size 293996 bytes: control archive=1692 bytes. 750 bytes, 17 lines control 2466 bytes, 34 lines md5sums Package: tigr-glimmer Version: 3.02b-5 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 978 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2020-05-13 20:19 ./ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/bin/ -rwxr-xr-x root/root 412 2020-05-13 20:19 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2020-05-13 20:19 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 46084 2020-05-13 20:19 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 76120 2020-05-13 20:19 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 76328 2020-05-13 20:19 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 41776 2020-05-13 20:19 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 46324 2020-05-13 20:19 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 41928 2020-05-13 20:19 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 157240 2020-05-13 20:19 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 80700 2020-05-13 20:19 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 50344 2020-05-13 20:19 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 71904 2020-05-13 20:19 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 50404 2020-05-13 20:19 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 15224 2020-05-13 20:19 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 28276 2020-05-13 20:19 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 23964 2020-05-13 20:19 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 228 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/NEWS.Debian.gz -rw-r--r-- root/root 957 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 1852 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1062 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2020-05-13 20:19 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/man/ drwxr-xr-x root/root 0 2020-05-13 20:19 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2020-05-13 20:19 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2020-05-13 20:19 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2020-05-13 20:19 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2020-05-13 20:19 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2020-05-13 20:19 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2020-05-13 20:19 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2020-05-13 20:19 ./usr/share/man/man1/tigr-run-glimmer3.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [534 B] Get:5 copy:/<>/apt_archive ./ Packages [619 B] Fetched 2116 B in 0s (83.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-address-xs-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmailtools-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-address-xs-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmailtools-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 9427 kB of archives. After this operation, 26.7 MB of additional disk space will be used. 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2.004000-1 [59.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.014+ds-1 [106 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.014+ds-1 [108 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 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(Reading database ... 20053 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libclone-perl (0.45-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.19-1) ... Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libsqlite3-0:amd64 (3.32.3-1) ... Setting up libfuture-perl (0.45-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.014+ds-1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libmetrics-any-perl (0.05-2) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.3.4-3) ... Setting up libjson-maybexs-perl (1.004002-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up t1utils (1.41-4) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b5) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.014+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libemail-address-xs-perl (1.04-1+b2) ... Setting up libnet-ssleay-perl (1.88-3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010002-1) ... Setting up libnet-dns-perl (1.24-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libtest-metrics-any-perl (0.01-2) ... Setting up libio-async-perl (0.77-2) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.20-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libio-async-loop-epoll-perl (0.21-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.80.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.9.3-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 32392 Build-Time: 31 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 18 Job: tigr-glimmer_3.02b-5 Lintian: pass Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 59 Source-Version: 3.02b-5 Space: 32392 Status: successful Version: 3.02b-5 -------------------------------------------------------------------------------- Finished at 2020-06-23T04:23:13Z Build needed 00:00:59, 32392k disk space