sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | tigr-glimmer 3.02b-6 (arm64) Sun, 26 Nov 2023 20:36:45 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-6 Source Version: 3.02b-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-38b4a264-aa57-425e-9a33-2cf37cc58fa6' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-n0BvQr/resolver-gkwtkT' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [34.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [49.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [34.6 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9497 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [49.1 kB] Fetched 9906 kB in 3s (3548 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash libperl5.36 libssl3 perl perl-base perl-modules-5.36 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 741 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:2 http://localhost:3142/debian sid/main amd64 libperl5.36 amd64 5.36.0-10 [4221 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl amd64 5.36.0-10 [239 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.36.0-10 [1602 kB] Get:5 http://localhost:3142/debian sid/main amd64 perl-modules-5.36 all 5.36.0-10 [2815 kB] Get:6 http://localhost:3142/debian sid/main amd64 libssl3 amd64 3.1.4-2 [2058 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (178 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14614 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2_amd64.deb ... Unpacking bash (5.2.21-2) over (5.2.21-1) ... Setting up bash (5.2.21-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14614 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-10_all.deb ... Unpacking perl-modules-5.36 (5.36.0-10) over (5.36.0-9) ... Preparing to unpack .../libssl3_3.1.4-2_amd64.deb ... Unpacking libssl3:amd64 (3.1.4-2) over (3.0.12-2) ... Setting up libssl3:amd64 (3.1.4-2) ... Setting up perl-modules-5.36 (5.36.0-10) ... Setting up libperl5.36:amd64 (5.36.0-10) ... Setting up perl (5.36.0-10) ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for debianutils (5.14) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5661 kB of source archives. Get:1 http://localhost:3142/debian sid/main tigr-glimmer 3.02b-6 (dsc) [2104 B] Get:2 http://localhost:3142/debian sid/main tigr-glimmer 3.02b-6 (tar) [5638 kB] Get:3 http://localhost:3142/debian sid/main tigr-glimmer 3.02b-6 (diff) [20.5 kB] Fetched 5661 kB in 2s (3476 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-n0BvQr/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-n0BvQr' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [714 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2080 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 415 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-13+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.2-6 [89.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-13 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.41-7 [3381 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [9771 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-1 [4120 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-12cross1 [1006 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 13.2.0-7cross2 [40.8 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 13.2.0-7cross2 [112 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 13.2.0-7cross2 [23.3 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 13.2.0-7cross2 [9892 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 13.2.0-7cross2 [2407 kB] Get:31 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 13.2.0-7cross2 [1068 kB] Get:32 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 13.2.0-7cross2 [2278 kB] Get:33 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 13.2.0-7cross2 [575 kB] Get:34 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 13.2.0-7cross2 [980 kB] Get:35 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 13.2.0-7cross2 [1119 kB] Get:36 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-7cross2 [2226 kB] Get:37 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [19.2 MB] Get:38 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-1 [1468 B] Get:39 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.5.8-1cross1 [1990 kB] Get:40 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.37-12cross1 [1427 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-7cross2 [2138 kB] Get:42 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [10.7 MB] Get:43 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-1 [1172 B] Get:44 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:45 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:60 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.8 [82.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:65 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:67 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:68 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:69 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-13+b1 [1301 kB] Get:70 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.8 [956 kB] Get:73 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.4.0-5 [40.1 kB] Get:74 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-7 [40.8 kB] Get:75 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 13.2.0-7 [40.8 kB] Get:76 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-12 [2325 kB] Get:77 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.4.0-5 [1951 kB] Get:78 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 13.2.0-7 [10.2 kB] Get:79 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 6.5.10-1 [1992 kB] Get:80 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-2 [90.3 kB] Get:81 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-2 [121 kB] Get:82 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-5 [32.5 kB] Get:83 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2+b1 [19.9 kB] Get:84 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-5 [79.9 kB] Get:85 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B] Get:86 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.1.4-2 [1835 kB] Get:87 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-5 [315 kB] Get:88 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-5 [124 kB] Get:89 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.4+ds-1 [77.9 kB] Get:90 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-3 [37.5 kB] Get:91 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [192 kB] Get:92 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-3 [66.3 kB] Get:93 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-12 [1431 kB] Get:94 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 13.2.0-7 [114 kB] Get:95 http://localhost:3142/debian sid/main arm64 libitm1 arm64 13.2.0-7 [23.8 kB] Get:96 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 13.2.0-7 [1069 kB] Get:97 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.4.0-5 [1957 kB] Get:98 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 13.2.0-7 [623 kB] Get:99 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 13.2.0-7 [980 kB] Get:100 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 13.2.0-7 [1121 kB] Get:101 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.4.0-5 [929 kB] Get:102 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.4.0-5 [1940 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 1s (181 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14615 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.45-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-2_amd64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-13+b1_amd64.deb ... Unpacking gettext-base (0.21-13+b1) ... 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Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:arm64 (11.4.0-5) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:amd64 (72.1-4) ... Setting up bsdextrautils (2.39.2-6) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.8) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up linux-libc-dev:arm64 (6.5.10-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-13+b1) ... Setting up m4 (1.4.19-4) ... Setting up binutils-aarch64-linux-gnu (2.41-7) ... Setting up file (1:5.45-2) ... Setting up libyaml-perl (1.30-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:arm64 (13.2.0-7) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libc6-arm64-cross (2.37-12cross1) ... Setting up autopoint (0.21-13) ... Setting up libitm1-arm64-cross (13.2.0-7cross2) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-arm64-cross (6.5.8-1cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up libgcc-s1-arm64-cross (13.2.0-7cross2) ... Setting up libatomic1-arm64-cross (13.2.0-7cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-7cross2) ... Setting up libgomp1-arm64-cross (13.2.0-7cross2) ... Setting up gettext (0.21-13+b1) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libhwasan0-arm64-cross (13.2.0-7cross2) ... Setting up libc6-dev-arm64-cross (2.37-12cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libasan8-arm64-cross (13.2.0-7cross2) ... Setting up libtsan2-arm64-cross (13.2.0-7cross2) ... Setting up libubsan1-arm64-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.8) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (13.2.0-7) ... Setting up libc6:arm64 (2.37-12) ... Setting up libhwasan0:arm64 (13.2.0-7) ... Setting up libstdc++6:arm64 (13.2.0-7) ... Setting up liblsan0:arm64 (13.2.0-7) ... Setting up libitm1:arm64 (13.2.0-7) ... Setting up libtsan0:arm64 (11.4.0-5) ... Setting up libkeyutils1:arm64 (1.6.3-2) ... Setting up libssl3:arm64 (3.1.4-2) ... Setting up libcrypt1:arm64 (1:4.4.36-2) ... Setting up libcom-err2:arm64 (1.47.0-2+b1) ... Setting up libgomp1:arm64 (13.2.0-7) ... Setting up libasan6:arm64 (11.4.0-5) ... Setting up libkrb5support0:arm64 (1.20.1-5) ... Setting up libatomic1:arm64 (13.2.0-7) ... Setting up libk5crypto3:arm64 (1.20.1-5) ... Setting up libubsan1:arm64 (13.2.0-7) ... Setting up libgcc-11-dev:arm64 (11.4.0-5) ... Setting up libcrypt-dev:arm64 (1:4.4.36-2) ... Setting up libkrb5-3:arm64 (1.20.1-5) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-5) ... Setting up libtirpc3:arm64 (1.3.4+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.37-12) ... Setting up libstdc++-11-dev:arm64 (11.4.0-5) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41-7 dpkg-dev_1.22.1 g++-11_11.4.0-5 g++-13_13.2.0-7 gcc-11_11.4.0-5 gcc-13_13.2.0-7 libc6-dev_2.37-12 libstdc++-11-dev_11.4.0-5 libstdc++-13-dev_13.2.0-7 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-7 libstdc++6-arm64-cross_13.2.0-7cross2 linux-libc-dev_6.5.10-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.2 bash_5.2.21-2 binutils_2.41-7 binutils-aarch64-linux-gnu_2.41-7 binutils-common_2.41-7 binutils-x86-64-linux-gnu_2.41-7 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-1 cpp-11_11.4.0-5 cpp-13_13.2.0-7 cpp-13-aarch64-linux-gnu_13.2.0-7cross2 cpp-aarch64-linux-gnu_4:13.2.0-1 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1 dpkg-cross_2.6.20 dpkg-dev_1.22.1 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1 g++-11_11.4.0-5 g++-13_13.2.0-7 g++-13-aarch64-linux-gnu_13.2.0-7cross2 g++-aarch64-linux-gnu_4:13.2.0-1 gcc_4:13.2.0-1 gcc-11_11.4.0-5 gcc-11-base_11.4.0-5 gcc-12-base_12.3.0-11 gcc-13_13.2.0-7 gcc-13-aarch64-linux-gnu_13.2.0-7cross2 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libctf0_2.41-7 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.1 libelf1_0.190-1 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-5 libgcc-13-dev_13.2.0-7 libgcc-13-dev-arm64-cross_13.2.0-7cross2 libgcc-s1_13.2.0-7 libgcc-s1-arm64-cross_13.2.0-7cross2 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4+b1 libgomp1_13.2.0-7 libgomp1-arm64-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41-7 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-7 libhwasan0-arm64-cross_13.2.0-7cross2 libicu72_72.1-4 libidn2-0_2.3.4-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.2.0-7 libitm1-arm64-cross_13.2.0-7cross2 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-7 liblsan0-arm64-cross_13.2.0-7cross2 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libquadmath0_13.2.0-7 libseccomp2_2.5.4-2 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-7 libsmartcols1_2.39.2-6 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-5 libstdc++-13-dev_13.2.0-7 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-7 libstdc++6-arm64-cross_13.2.0-7cross2 libsub-override-perl_0.09-4 libsystemd0_255~rc3-2 libtasn1-6_4.19.0-3 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po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.2-6 util-linux-extra_2.39.2-6 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Étienne Mollier Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 409b805f26572654d9aa3a6acacbaa047ffbd0f3 20516 tigr-glimmer_3.02b-6.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 94d8f00b7052a4792cd9612f9ef91eb229194f3dbaf057794c98112805b5537f 20516 tigr-glimmer_3.02b-6.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz b743ca043f6fd888e7892afd584d113b 20516 tigr-glimmer_3.02b-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmFrHLAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoe1g/8DNy6wTJQhG6eKP+/bWm/eXg9hrEm 5cAJrxl8P6WzA6qnCS1402E46hW2r/bRGG11y8R10Rf/kgRWprsd1utdIQdG7wez ru3W1Q7h6sPP3jbr5wd0/DotCOGc3tGsO1HNZmiiklKm2o3Jvzqypb5YX5cbib5C shHbC1mEqOugcthKlcbJchueAt5ZwPVoOkm9FuzJayaYAiQf52LSlmoJTJVETZOZ 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info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.xXFeh9DvvD/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-38b4a264-aa57-425e-9a33-2cf37cc58fa6 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" delcher.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" fasta.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" gene.o ; \ fi ; gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" icm.o ; \ fi ; icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-icm.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-fixed.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" score-fixed.o ; \ fi ; ################### libGLMicm.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" anomaly.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" glimmer3.o ; \ fi ; glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" long-orfs.o ; \ fi ; long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" test.o ; \ fi ; ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'aarch64-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-profile.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-score.o ; \ fi ; entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" multi-extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" start-codon-distrib.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" uncovered.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" window-acgt.o ; \ fi ; ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /<>/obj; \ aarch64-linux-gnu-gcc -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ aarch64-linux-gnu-g++ -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/tigr-glimmer/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_arm64.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-6_arm64.deb'. dpkg-genbuildinfo --build=any -O../tigr-glimmer_3.02b-6_arm64.buildinfo dpkg-genchanges --build=any -O../tigr-glimmer_3.02b-6_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-26T20:37:42Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-6_arm64.changes: ----------------------------------- Format: 1.8 Date: Sat, 16 Oct 2021 20:37:42 +0200 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 3.02b-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 984367 Changes: tigr-glimmer (3.02b-6) unstable; urgency=medium . * d/rules: prevent CXXDEFS from setting __cplusplus (Closes: #984367) * d/control: add myself to uploaders * d/watch: fall back to http protocol to repair scan * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) Checksums-Sha1: 79c6ef8f43cdafaf6d7b9e9ce902cb1c41c48894 1496996 tigr-glimmer-dbgsym_3.02b-6_arm64.deb 8953f4aa8f8c975be0d80aed4d2309ba6b4b1d65 5294 tigr-glimmer_3.02b-6_arm64.buildinfo 97f94810c06737e7e1ad1dc4e6f81491d79e7896 270048 tigr-glimmer_3.02b-6_arm64.deb Checksums-Sha256: 789430a9d423144becdbe7c88397d8ca5a63f21cc4bbf726ef3afefc4c0840af 1496996 tigr-glimmer-dbgsym_3.02b-6_arm64.deb cb41d1629867f22f97356338ffb12f780dca24947c075b322743f8718a99372b 5294 tigr-glimmer_3.02b-6_arm64.buildinfo af76f72502fb32825ac9efed42a4dc28bebb2e4fdb39b6e4ce55929e59706bcb 270048 tigr-glimmer_3.02b-6_arm64.deb Files: ad53323807c110774bf06696374216d6 1496996 debug optional tigr-glimmer-dbgsym_3.02b-6_arm64.deb 6f7d3a63b7e0450b9b06cd8653bf2f54 5294 science optional tigr-glimmer_3.02b-6_arm64.buildinfo cd256aff56549583eb09e8b12178b1ee 270048 science optional tigr-glimmer_3.02b-6_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Architecture: arm64 Version: 3.02b-6 Checksums-Md5: ad53323807c110774bf06696374216d6 1496996 tigr-glimmer-dbgsym_3.02b-6_arm64.deb cd256aff56549583eb09e8b12178b1ee 270048 tigr-glimmer_3.02b-6_arm64.deb Checksums-Sha1: 79c6ef8f43cdafaf6d7b9e9ce902cb1c41c48894 1496996 tigr-glimmer-dbgsym_3.02b-6_arm64.deb 97f94810c06737e7e1ad1dc4e6f81491d79e7896 270048 tigr-glimmer_3.02b-6_arm64.deb Checksums-Sha256: 789430a9d423144becdbe7c88397d8ca5a63f21cc4bbf726ef3afefc4c0840af 1496996 tigr-glimmer-dbgsym_3.02b-6_arm64.deb af76f72502fb32825ac9efed42a4dc28bebb2e4fdb39b6e4ce55929e59706bcb 270048 tigr-glimmer_3.02b-6_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 26 Nov 2023 20:37:41 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.2), bash (= 5.2.21-2), binutils (= 2.41-7), binutils-common (= 2.41-7), binutils-x86-64-linux-gnu (= 2.41-7), bsdextrautils (= 2.39.2-6), bsdutils (= 1:2.39.2-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.4-2+b1), cpp (= 4:13.2.0-1), cpp-11 (= 11.4.0-5), cpp-13 (= 13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.8), debianutils (= 5.14), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1), dpkg-dev (= 1.22.1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-7), gcc (= 4:13.2.0-1), gcc-11 (= 11.4.0-5), gcc-11-base (= 11.4.0-5), gcc-13 (= 13.2.0-7), gcc-13-base (= 13.2.0-7), gettext (= 0.21-13+b1), gettext-base (= 0.21-13+b1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-5), libasan8 (= 13.2.0-7), libatomic1 (= 13.2.0-7), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-7), libblkid1 (= 2.39.2-6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-12), libc-dev-bin (= 2.37-12), libc6 (= 2.37-12), libc6-dev (= 2.37-12), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-7), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-7), libctf0 (= 2.41-7), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.8), libdpkg-perl (= 1.22.1), libelf1 (= 0.190-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-5), libgcc-13-dev (= 13.2.0-7), libgcc-s1 (= 13.2.0-7), libgcrypt20 (= 1.10.2-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-7), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41-7), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-7), libicu72 (= 72.1-4), libisl23 (= 0.26-3), libitm1 (= 13.2.0-7), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), liblsan0 (= 13.2.0-7), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-9.1), libpam-modules-bin (= 1.5.2-9.1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-10), libpipeline1 (= 1.5.7-1), libquadmath0 (= 13.2.0-7), libseccomp2 (= 2.5.4-2), libselinux1 (= 3.5-1), libsframe1 (= 2.41-7), libsmartcols1 (= 2.39.2-6), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-7), libstdc++6 (= 13.2.0-7), libsub-override-perl (= 0.09-4), libsystemd0 (= 255~rc3-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231121-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-5), libtsan2 (= 13.2.0-7), libubsan1 (= 13.2.0-7), libuchardet0 (= 0.0.7-1), libudev1 (= 255~rc3-2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.10-1), login (= 1:4.13+dfsg1-3), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231102-1), ncurses-base (= 6.4+20231121-1), ncurses-bin (= 6.4+20231121-1), patch (= 2.7.6-7), perl (= 5.36.0-10), perl-base (= 5.36.0-10), perl-modules-5.36 (= 5.36.0-10), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3), tar (= 1.34+dfsg-1.2), usrmerge (= 38), util-linux (= 2.39.2-6), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634409462" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer-dbgsym_3.02b-6_arm64.deb ------------------------------------- new Debian package, version 2.0. size 1496996 bytes: control archive=1236 bytes. 924 bytes, 12 lines control 1574 bytes, 15 lines md5sums Package: tigr-glimmer-dbgsym Source: tigr-glimmer Version: 3.02b-6 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1723 Depends: tigr-glimmer (= 3.02b-6) Section: debug Priority: optional Description: debug symbols for tigr-glimmer Build-Ids: 03b25ce7b217c4a90c179e5f3b58b904fe6de397 0823463fc2f8253fd3519930acc1c75b01ea9968 2059ae0c55abc342ed05bab9549504bb5add136c 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74256 2021-10-16 18:37 ./usr/lib/debug/.build-id/08/23463fc2f8253fd3519930acc1c75b01ea9968.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 138256 2021-10-16 18:37 ./usr/lib/debug/.build-id/20/59ae0c55abc342ed05bab9549504bb5add136c.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/2a/ -rw-r--r-- root/root 146648 2021-10-16 18:37 ./usr/lib/debug/.build-id/2a/82201c2191c31cd6630dbc73e19d1912c1a9ca.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/2e/ -rw-r--r-- root/root 127584 2021-10-16 18:37 ./usr/lib/debug/.build-id/2e/7fa4bd62f64ac569d6a143225ff286b1f8f835.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/30/ -rw-r--r-- root/root 78680 2021-10-16 18:37 ./usr/lib/debug/.build-id/30/e528ac81eb461ee9e5e575936eb7334ad23e15.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/6b/ -rw-r--r-- root/root 20552 2021-10-16 18:37 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270048 bytes: control archive=1668 bytes. 751 bytes, 17 lines control 2390 bytes, 33 lines md5sums Package: tigr-glimmer Version: 3.02b-6 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1185 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2021-10-16 18:37 ./ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/bin/ -rwxr-xr-x root/root 412 2020-05-11 17:27 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2020-05-11 17:27 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 67856 2021-10-16 18:37 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 67856 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 68208 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 67968 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 68424 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 68104 2021-10-16 18:37 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 134376 2021-10-16 18:37 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 68680 2021-10-16 18:37 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 68104 2021-10-16 18:37 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 67840 2021-10-16 18:37 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 68104 2021-10-16 18:37 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 67760 2021-10-16 18:37 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 67960 2021-10-16 18:37 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 67936 2021-10-16 18:37 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 957 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 806 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1062 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2021-10-16 18:37 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2021-10-16 18:37 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2021-10-16 18:37 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2021-10-16 18:37 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2021-10-16 18:37 ./usr/share/man/man1/tigr-run-glimmer3.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1296 B] Get:5 copy:/<>/apt_archive ./ Packages [1375 B] Fetched 3286 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: The following packages have unmet dependencies: libreadline8 : Depends: readline-common but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:arm64 : Depends: lintian:amd64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 35256 Build-Time: 29 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 13 Job: tigr-glimmer_3.02b-6 Lintian: error Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 57 Source-Version: 3.02b-6 Space: 35256 Status: successful Version: 3.02b-6 -------------------------------------------------------------------------------- Finished at 2023-11-26T20:37:42Z Build needed 00:00:57, 35256k disk space