sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | tigr-glimmer 3.02b-6 (armel) Mon, 13 Oct 2025 21:29:38 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-6 Source Version: 3.02b-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-932fd1ba-1ade-4618-b5cd-3bb828d15b08' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-8v2EmI/resolver-N4khHS' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [207 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-10-13-1409.24-F-2025-10-13-0219.38.pdiff [48.0 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-13-1409.24-F-2025-10-13-0219.38.pdiff [46.9 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-10-13-1409.24-F-2025-10-13-0219.38.pdiff [48.0 kB] Get:6 http://localhost:3142/debian unstable/main armel Packages [9606 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-13-1409.24-F-2025-10-13-0219.38.pdiff [46.9 kB] Fetched 10.0 MB in 3s (3755 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5661 kB of source archives. Get:1 http://localhost:3142/debian unstable/main tigr-glimmer 3.02b-6 (dsc) [2104 B] Get:2 http://localhost:3142/debian unstable/main tigr-glimmer 3.02b-6 (tar) [5638 kB] Get:3 http://localhost:3142/debian unstable/main tigr-glimmer 3.02b-6 (diff) [20.5 kB] Fetched 5661 kB in 1s (6080 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-8v2EmI/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-8v2EmI' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [714 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2080 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-15-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libstdc++-15-doc:armel libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-15-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. 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http://localhost:3142/debian unstable/main amd64 libc6-armel-cross all 2.41-11cross1 [942 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armel-cross all 15.2.0-4cross1 [38.9 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-armel-cross all 15.2.0-4cross1 [113 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libatomic1-armel-cross all 15.2.0-4cross1 [9472 B] Get:26 http://localhost:3142/debian unstable/main amd64 libasan8-armel-cross all 15.2.0-4cross1 [2590 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libstdc++6-armel-cross all 15.2.0-4cross1 [561 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libubsan1-armel-cross all 15.2.0-4cross1 [1072 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-armel-cross all 15.2.0-4cross1 [755 kB] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [88.1 MB] Get:31 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:15.2.0-4 [1456 B] Get:32 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armel-cross all 6.12.38-1cross1 [2430 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libc6-dev-armel-cross all 2.41-11cross1 [1358 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-armel-cross all 15.2.0-4cross1 [2409 kB] Get:35 http://localhost:3142/debian unstable/main amd64 g++-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [85.9 MB] Get:36 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:15.2.0-4 [1204 B] Get:37 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armel all 12.12 [3552 B] Get:38 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get:40 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:43 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:44 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:45 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get:48 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:49 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:50 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:51 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:53 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:54 http://localhost:3142/debian unstable/main armel gcc-15-base armel 15.2.0-4 [52.8 kB] Get:55 http://localhost:3142/debian unstable/main armel libgcc-s1 armel 15.2.0-4 [38.9 kB] Get:56 http://localhost:3142/debian unstable/main armel libc6 armel 2.41-12 [2262 kB] Get:57 http://localhost:3142/debian unstable/main armel libasan8 armel 15.2.0-4 [2601 kB] Get:58 http://localhost:3142/debian unstable/main armel libatomic1 armel 15.2.0-4 [9708 B] Get:59 http://localhost:3142/debian unstable/main armel libcrypt1 armel 1:4.4.38-1 [97.4 kB] Get:60 http://localhost:3142/debian unstable/main armel libcrypt-dev armel 1:4.4.38-1 [127 kB] Get:61 http://localhost:3142/debian unstable/main armel libc6-dev armel 2.41-12 [1362 kB] Get:62 http://localhost:3142/debian unstable/main armel libgomp1 armel 15.2.0-4 [116 kB] Get:63 http://localhost:3142/debian unstable/main armel libstdc++6 armel 15.2.0-4 [608 kB] Get:64 http://localhost:3142/debian unstable/main armel libubsan1 armel 15.2.0-4 [1072 kB] Get:65 http://localhost:3142/debian unstable/main armel libgcc-15-dev armel 15.2.0-4 [761 kB] Get:66 http://localhost:3142/debian unstable/main armel libstdc++-15-dev armel 15.2.0-4 [2406 kB] Preconfiguring packages ... Fetched 291 MB in 1s (216 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12899 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up gcc-15-cross-base-ports (15.2.0-4cross1) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up linux-libc-dev-armel-cross (6.12.38-1cross1) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Setting up autoconf (2.72-3.1) ... Setting up libc6-armel-cross (2.41-11cross1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libc6-dev-armel-cross (2.41-11cross1) ... Setting up gcc-15-base:armel (15.2.0-4) ... Setting up cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgomp1-armel-cross (15.2.0-4cross1) ... Setting up libtool (2.5.4-5) ... Setting up libgcc-s1-armel-cross (15.2.0-4cross1) ... Setting up libstdc++6-armel-cross (15.2.0-4cross1) ... Setting up libatomic1-armel-cross (15.2.0-4cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up cpp-arm-linux-gnueabi (4:15.2.0-4) ... Setting up libubsan1-armel-cross (15.2.0-4cross1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libasan8-armel-cross (15.2.0-4cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up debhelper (13.28) ... Setting up libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-arm-linux-gnueabi (4:15.2.0-4) ... Setting up g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up g++-arm-linux-gnueabi (4:15.2.0-4) ... Setting up crossbuild-essential-armel (12.12) ... Setting up libgcc-s1:armel (15.2.0-4) ... Setting up libc6:armel (2.41-12) ... Setting up libasan8:armel (15.2.0-4) ... Setting up libstdc++6:armel (15.2.0-4) ... Setting up libcrypt1:armel (1:4.4.38-1) ... Setting up libgomp1:armel (15.2.0-4) ... Setting up libatomic1:armel (15.2.0-4) ... Setting up libubsan1:armel (15.2.0-4) ... Setting up libcrypt-dev:armel (1:4.4.38-1) ... Setting up libc6-dev:armel (2.41-12) ... Setting up libgcc-15-dev:armel (15.2.0-4) ... Setting up libstdc++-15-dev:armel (15.2.0-4) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-armel-cross_15.2.0-4cross1 linux-libc-dev_6.16.11-1 Package versions: apt_3.1.8 apt-utils_3.1.8 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-arm-linux-gnueabi_2.45-7 binutils-common_2.45-7 binutils-x86-64-linux-gnu_2.45-7 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-arm-linux-gnueabi_15.2.0-4cross1 cpp-15-x86-64-linux-gnu_15.2.0-4 cpp-arm-linux-gnueabi_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-armel_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-arm-linux-gnueabi_15.2.0-4cross1 g++-15-x86-64-linux-gnu_15.2.0-4 g++-arm-linux-gnueabi_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-4 gcc-15-arm-linux-gnueabi_15.2.0-4cross1 gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1 gcc-15-base_15.2.0-4 gcc-15-cross-base-ports_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-4 gcc-arm-linux-gnueabi_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.8 libarchive-zip-perl_1.68-1 libasan8_15.2.0-4 libasan8-armel-cross_15.2.0-4cross1 libatomic1_15.2.0-4 libatomic1-armel-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-4 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-armel-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-armel-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libfakeroot_1.37.1.2-1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-4 libgcc-15-dev-armel-cross_15.2.0-4cross1 libgcc-s1_15.2.0-4 libgcc-s1-armel-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp10_2:6.3.0+dfsg-5 libgomp1_15.2.0-4 libgomp1-armel-cross_15.2.0-4cross1 libgprofng0_2.45-7 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-4 libisl23_0.27-1 libitm1_15.2.0-4 libjansson4_2.14-2+b3 liblsan0_15.2.0-4 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libnettle8t64_3.10.2-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libquadmath0_15.2.0-4 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-7 libsmartcols1_2.41.2-4 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-armel-cross_15.2.0-4cross1 libsystemd0_258-1 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libtsan2_15.2.0-4 libubsan1_15.2.0-4 libubsan1-armel-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.11-1 linux-libc-dev-armel-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-1 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 mount_2.41.2-4 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Étienne Mollier Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 409b805f26572654d9aa3a6acacbaa047ffbd0f3 20516 tigr-glimmer_3.02b-6.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 94d8f00b7052a4792cd9612f9ef91eb229194f3dbaf057794c98112805b5537f 20516 tigr-glimmer_3.02b-6.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz b743ca043f6fd888e7892afd584d113b 20516 tigr-glimmer_3.02b-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmFrHLAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoe1g/8DNy6wTJQhG6eKP+/bWm/eXg9hrEm 5cAJrxl8P6WzA6qnCS1402E46hW2r/bRGG11y8R10Rf/kgRWprsd1utdIQdG7wez ru3W1Q7h6sPP3jbr5wd0/DotCOGc3tGsO1HNZmiiklKm2o3Jvzqypb5YX5cbib5C shHbC1mEqOugcthKlcbJchueAt5ZwPVoOkm9FuzJayaYAiQf52LSlmoJTJVETZOZ Ftn31Fi1WMtI6WhtHbCG4cNj581d4RyaKkuD6V6vg0gEOJOn0rAIwc8TscsgCd0K pZ702LNWf50e1a1ZeSjOB1IcHmh4tPMetvnfcjp6GWbAVejhSnRkPo6tzlFs7mqt aKiCvajVsmQPfiIKe9SV+f7KAYU6X34n6tGlHRot9N4jfNSO0Wpp0HeU7+q22N1m nHmP4cOaJFDNzF4KEEWxVPWDn19HEmv/jjLCq0UVfYlMx+uFuV6NxR6XEHyFtRTD 4VFU9dM9c9JMw+i46z+8DWwkSxpEfQS17nUziN6MxbTQwqPcD9JT8nL89oGyUBqw H25vwIXp7dYvVh0eW4Mi/dyNDI7ssvkWYSuNBxzovAYk25v0x9VO2HA9eS9secBR 3nsDIDVkCAF0ezKnsvchcRToPN6I4YetSaV+4crRL2dptCvV6YEtdABbxyK5PhnL 0cQRN3hIlW2punY= =Ep2R -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found dpkg-source: info: extracting tigr-glimmer in /<> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.7aBUBNB7E0/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-932fd1ba-1ade-4618-b5cd-3bb828d15b08 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" CPPFLAGS="-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" CPPFLAGS="-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' if [ -e delcher.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e gene.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" delcher.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" fasta.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" gene.o ; \ fi ; gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' if [ -e icm.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" icm.o ; \ fi ; icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-icm.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-fixed.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" score-fixed.o ; \ fi ; ################### libGLMicm.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e test.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" anomaly.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" glimmer3.o ; \ fi ; glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/algorithm:63, from /<>/src/Common/delcher.hh:25, from glimmer3.hh:15, from glimmer3.cc:17: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1751 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1771 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:61: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Gene_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1877 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Gene_t&, const Gene_t&)]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘void Trace_Back(FILE*, const Event_Node_t&)’ at glimmer3.cc:3472:9, inlined from ‘int main(int, char**)’ at glimmer3.cc:262:21: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1906 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1907 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1908 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1909:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const Gene_t&, const Gene_t&)]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘void Trace_Back(FILE*, const Event_Node_t&)’ at glimmer3.cc:3472:9, inlined from ‘int main(int, char**)’ at glimmer3.cc:262:21: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1818 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1823 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" long-orfs.o ; \ fi ; long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" test.o ; \ fi ; ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'arm-linux-gnueabi-g++ -M -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-profile.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-score.o ; \ fi ; entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" multi-extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" start-codon-distrib.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" uncovered.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ arm-linux-gnueabi-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" window-acgt.o ; \ fi ; ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /<>/obj; \ arm-linux-gnueabi-gcc -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ arm-linux-gnueabi-g++ -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/tigr-glimmer/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/uncovered contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-score contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/window-acgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-profile contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/long-orfs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/multi-extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/start-codon-distrib contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/glimmer3 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-icm contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/score-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/anomaly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_armel.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-6_armel.deb'. dpkg-genbuildinfo --build=any -O../tigr-glimmer_3.02b-6_armel.buildinfo dpkg-genchanges --build=any -O../tigr-glimmer_3.02b-6_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-13T21:30:37Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ----------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-6_armel.changes: ----------------------------------- Format: 1.8 Date: Sat, 16 Oct 2021 20:37:42 +0200 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 3.02b-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 984367 Changes: tigr-glimmer (3.02b-6) unstable; urgency=medium . * d/rules: prevent CXXDEFS from setting __cplusplus (Closes: #984367) * d/control: add myself to uploaders * d/watch: fall back to http protocol to repair scan * 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Architecture: armel Version: 3.02b-6 Checksums-Md5: 75a4334ecd7c328a87a091fea219fabc 1344608 tigr-glimmer-dbgsym_3.02b-6_armel.deb eb3e590720f976ee14a636fd7a5cb649 263104 tigr-glimmer_3.02b-6_armel.deb Checksums-Sha1: 28c26f00eeed145e605a4c97045d608a4ade9c2d 1344608 tigr-glimmer-dbgsym_3.02b-6_armel.deb f0b5fa35e67bc34f17734acaa902ff1af81b2e33 263104 tigr-glimmer_3.02b-6_armel.deb Checksums-Sha256: 0b8fff6bb3d0d14529db8d74f1518a2b0f0369b3ddfe0f0ebd870d3a6cfbd3c1 1344608 tigr-glimmer-dbgsym_3.02b-6_armel.deb 9697eaf192c6b05c8474526e8a965b2858bfcb0bd52863c1f6989fdf3b238ef2 263104 tigr-glimmer_3.02b-6_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 13 Oct 2025 21:30:36 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-7), binutils-common (= 2.45-7), binutils-x86-64-linux-gnu (= 2.45-7), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-x86-64-linux-gnu (= 15.2.0-4), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-4), g++-15-x86-64-linux-gnu (= 15.2.0-4), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-4), gcc-15-base (= 15.2.0-4), gcc-15-x86-64-linux-gnu (= 15.2.0-4), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-4), libatomic1 (= 15.2.0-4), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-7), libblkid1 (= 2.41.2-4), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-4), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-7), libctf0 (= 2.45-7), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-4), libgcc-s1 (= 15.2.0-4), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp10 (= 2:6.3.0+dfsg-5), libgomp1 (= 15.2.0-4), libgprofng0 (= 2.45-7), libhwasan0 (= 15.2.0-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-4), libjansson4 (= 2.14-2+b3), liblsan0 (= 15.2.0-4), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libquadmath0 (= 15.2.0-4), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-7), libsmartcols1 (= 2.41.2-4), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-4), libstdc++6 (= 15.2.0-4), libsystemd0 (= 258-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-5), libtsan2 (= 15.2.0-4), libubsan1 (= 15.2.0-4), libuchardet0 (= 0.0.8-2), libudev1 (= 258-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.14.6+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.11-1), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1634409462" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer-dbgsym_3.02b-6_armel.deb ------------------------------------- new Debian package, version 2.0. size 1344608 bytes: control archive=1232 bytes. 924 bytes, 12 lines control 1574 bytes, 15 lines md5sums Package: tigr-glimmer-dbgsym Source: tigr-glimmer Version: 3.02b-6 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 2047 Depends: tigr-glimmer (= 3.02b-6) Section: debug Priority: optional Description: debug symbols for tigr-glimmer Build-Ids: 05cf53d52c4e107b52560189c8cffba8bf6f8418 099dcafda1711001b8ed9258d99aee121aea4b58 17e67d513cbd1ad654895b7a3cd371913c83579f 23cab694aa154efdb2518e97f8a0f40b5b473625 2d601968aff7628025ee88b347a79885bfc99160 484d5c349c3e5f870e03cace6a9ff334ffd78227 4f1ad2d20bd40fc4f3ea00059966b15b24c399ac 533c3855b842caf5621915a705a1399b2c693be1 6720399d0a636c3722cfa3a510b3030acdf02c2f 74d7acc4c4e8a0439b594b2c4950990bb21da0a1 76910dc47856b432954284cc6114d08a6e74cfb7 8f86eb4ed644028838480742e021d7c25085e2bb 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./usr/lib/debug/.build-id/fe/b2a9ae1853412a77326a9b3d4f2613554a09d2.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 90400 2021-10-16 18:37 ./usr/lib/debug/.dwz/arm-linux-gnueabi/tigr-glimmer.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer-dbgsym -> tigr-glimmer tigr-glimmer_3.02b-6_armel.deb ------------------------------ new Debian package, version 2.0. size 263104 bytes: control archive=1672 bytes. 751 bytes, 17 lines control 2390 bytes, 33 lines md5sums Package: tigr-glimmer Version: 3.02b-6 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1172 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2021-10-16 18:37 ./ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/bin/ -rwxr-xr-x root/root 412 2020-05-11 17:27 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2020-05-11 17:27 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 67268 2021-10-16 18:37 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 67280 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 67456 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 67328 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 67716 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 67396 2021-10-16 18:37 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 133472 2021-10-16 18:37 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 67856 2021-10-16 18:37 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 67396 2021-10-16 18:37 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 67264 2021-10-16 18:37 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 67396 2021-10-16 18:37 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 67212 2021-10-16 18:37 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 67312 2021-10-16 18:37 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 67312 2021-10-16 18:37 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 957 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 806 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1062 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2021-10-16 18:37 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2021-10-16 18:37 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2021-10-16 18:37 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2021-10-16 18:37 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2021-10-16 18:37 ./usr/share/man/man1/tigr-run-glimmer3.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1296 B] Get:5 copy:/<>/apt_archive ./ Packages [1375 B] Fetched 3286 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:armel shared-mime-info t1utils ucf unzip 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. Need to get 24.0 MB of archives. After this operation, 91.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.16.0-4 [400 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9-2 [252 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1 [131 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-1 [70.9 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.1-1 [228 kB] Get:41 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.1-1 [562 kB] Get:42 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.56-2 [89.1 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-3 [129 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-3 [634 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.18.0-1 [3125 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.42 [68.3 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.85-1 [24.0 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:102 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:103 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-4 [25.6 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:111 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:118 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:119 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:122 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.80-1 [184 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:130 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:131 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:132 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:137 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:142 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1 [42.1 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:155 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:159 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6 [313 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB] Get:171 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB] Get:172 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:173 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:174 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:175 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:176 http://localhost:3142/debian unstable/main amd64 lintian all 2.126.0 [1065 kB] Preconfiguring packages ... Fetched 24.0 MB in 0s (173 MB/s) Selecting previously unselected package netbase. (Reading database ... 18409 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.5.4-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.8-3_amd64.deb ... Unpacking gpgconf (2.4.8-3) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../046-libksba8_1.6.7-2+b1_amd64.deb ... Unpacking libksba8:amd64 (1.6.7-2+b1) ... Selecting previously unselected package libnpth0t64:amd64. 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Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libnpth0t64:amd64 (1.8-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libgpg-error0:amd64 (1.56-2) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.85-1) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... 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Setting up diffstat (1.68-1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.28-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up procps (2:4.0.4-9) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libstemmer0d:amd64 (3.0.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.4-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.3-3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0052) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up gpgconf (2.4.8-3) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up gpg (2.4.8-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.24-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-4) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.1.1-1) ... Setting up appstream (1.1.1-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.80-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.126.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 29 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 12 Job: tigr-glimmer_3.02b-6 Lintian: pass Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 59 Source-Version: 3.02b-6 Space: n/a Status: successful Version: 3.02b-6 -------------------------------------------------------------------------------- Finished at 2025-10-13T21:30:37Z Build needed 00:00:59, no disk space