sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | tigr-glimmer 3.02b-6 (mipsel) Tue, 02 Nov 2021 08:01:26 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-6 Source Version: 3.02b-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-fe628bc0-4d4f-4001-8e96-e2dc6b4b5edb' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wq7Gid/resolver-yaYBvl' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8476 kB] Fetched 8476 kB in 2s (5082 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tigr-glimmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tigr-glimmer.git Please use: git clone https://salsa.debian.org/med-team/tigr-glimmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5661 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-6 (dsc) [2104 B] Get:2 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-6 (tar) [5638 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main tigr-glimmer 3.02b-6 (diff) [20.5 kB] Fetched 5661 kB in 0s (78.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wq7Gid/tigr-glimmer-3.02b' with '<>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-wq7Gid' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [493 B] Fetched 1854 B in 0s (77.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-11-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-11-cross-base-mipsen gcc-11-mipsel-linux-gnu gcc-11-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-11-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-11-dev libstdc++-11-dev:mipsel libstdc++-11-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc g++-11-multilib-mipsel-linux-gnu gcc-11-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel glibc-doc manpages-dev:mipsel gnupg git bzr krb5-doc:mipsel krb5-user:mipsel libstdc++-11-doc libstdc++-11-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mipsel libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-11-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-11-cross-base-mipsen gcc-11-mipsel-linux-gnu gcc-11-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-11-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-11-dev libstdc++-11-dev:mipsel libstdc++-11-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:mipsel sensible-utils ucf 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 254 MB of archives. After this operation, 888 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-11-base mipsel 11.2.0-10 [206 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1 [823 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.37-4cross4 [2446 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-10 [1952 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-10 [49.7 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mipsel-linux-gnu-base amd64 11.2.0-9cross1 [206 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-mipsel-linux-gnu amd64 11.2.0-9cross1 [45.9 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:11.2.0-2 [16.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base-mipsen all 11.2.0-9cross1 [201 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.32-1cross3 [1196 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 11.2.0-9cross1 [46.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 11.2.0-9cross1 [95.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 11.2.0-9cross1 [6620 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-mipsel-cross all 11.2.0-9cross1 [255 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mipsel-linux-gnu amd64 11.2.0-9cross1 [51.6 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:11.2.0-2 [1448 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 11.2.0-9cross1 [458 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.10.46-4cross3 [1460 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.32-1cross3 [1926 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-mipsel-cross all 11.2.0-9cross1 [1953 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-mipsel-linux-gnu amd64 11.2.0-9cross1 [50.0 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:11.2.0-2 [1172 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 11.2.0-10 [46.2 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.32-4 [2431 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 11.2.0-10 [6676 B] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.14.12-1 [1426 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.25-2 [113 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.25-2 [131 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.46.4-1 [74.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.18.3-7 [64.7 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.18.3-7 [119 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1l-1 [1194 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.18.3-7 [335 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.18.3-7 [149 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc3 mipsel 1.3.2-2 [74.0 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc-dev mipsel 1.3.2-2 [197 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.32-4 [1921 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 11.2.0-10 [97.2 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-11-dev mipsel 11.2.0-10 [254 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 11.2.0-10 [498 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-11-dev mipsel 11.2.0-10 [1953 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 254 MB in 2s (126 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10546 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... 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Setting up libatomic1-mipsel-cross (11.2.0-9cross1) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up cpp-11-mipsel-linux-gnu (11.2.0-9cross1) ... Setting up binutils-mipsel-linux-gnu (2.37-4cross4) ... Setting up cpp-mipsel-linux-gnu (4:11.2.0-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libgomp1-mipsel-cross (11.2.0-9cross1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up linux-libc-dev-mipsel-cross (5.10.46-4cross3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gettext (0.21-4) ... Setting up libc6-dev-mipsel-cross (2.32-1cross3) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-mipsel-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-6) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-10) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-11-dev-mipsel-cross (11.2.0-9cross1) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libstdc++6-mipsel-cross (11.2.0-9cross1) ... Setting up g++-11 (11.2.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up gcc-11-mipsel-linux-gnu (11.2.0-9cross1) ... Setting up libstdc++-11-dev-mipsel-cross (11.2.0-9cross1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up g++-11-mipsel-linux-gnu (11.2.0-9cross1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-mipsel-linux-gnu (4:11.2.0-2) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mipsel-linux-gnu (4:11.2.0-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up debhelper (13.5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libgcc-s1:mipsel (11.2.0-10) ... Setting up libc6:mipsel (2.32-4) ... Setting up libstdc++6:mipsel (11.2.0-10) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up libssl1.1:mipsel (1.1.1l-1) ... Setting up libcrypt1:mipsel (1:4.4.25-2) ... Setting up libcom-err2:mipsel (1.46.4-1) ... Setting up libgomp1:mipsel (11.2.0-10) ... Setting up libkrb5support0:mipsel (1.18.3-7) ... Setting up libatomic1:mipsel (11.2.0-10) ... Setting up libk5crypto3:mipsel (1.18.3-7) ... Setting up libgcc-11-dev:mipsel (11.2.0-10) ... Setting up libcrypt-dev:mipsel (1:4.4.25-2) ... Setting up libkrb5-3:mipsel (1.18.3-7) ... Setting up libgssapi-krb5-2:mipsel (1.18.3-7) ... Setting up libtirpc3:mipsel (1.3.2-2) ... Setting up libtirpc-dev:mipsel (1.3.2-2) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.32-4) ... Setting up libstdc++-11-dev:mipsel (11.2.0-10) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-mipsel-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-mipsel-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-mipsel-linux-gnu_2.37-4cross4 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cpp-11-mipsel-linux-gnu_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-mipsel-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-mipsel_12.9 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.79 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-4 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 g++-11-mipsel-linux-gnu_11.2.0-9cross1 g++-mipsel-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-12 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-11-cross-base-mipsen_11.2.0-9cross1 gcc-11-mipsel-linux-gnu_11.2.0-9cross1 gcc-11-mipsel-linux-gnu-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-mipsel-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-10 libatomic1_11.2.0-10 libatomic1-mipsel-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-mipsel-cross_2.32-1cross3 libc6-mipsel-cross_2.32-1cross3 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-4 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-10 libgcc-11-dev-mipsel-cross_11.2.0-9cross1 libgcc-s1_11.2.0-10 libgcc-s1-mipsel-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgomp1-mipsel-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-10 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tigr-glimmer Binary: tigr-glimmer Architecture: any Version: 3.02b-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Étienne Mollier Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: tigr-glimmer deb science optional arch=any Checksums-Sha1: 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz 409b805f26572654d9aa3a6acacbaa047ffbd0f3 20516 tigr-glimmer_3.02b-6.debian.tar.xz Checksums-Sha256: ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz 94d8f00b7052a4792cd9612f9ef91eb229194f3dbaf057794c98112805b5537f 20516 tigr-glimmer_3.02b-6.debian.tar.xz Files: 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz b743ca043f6fd888e7892afd584d113b 20516 tigr-glimmer_3.02b-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmFrHLAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoe1g/8DNy6wTJQhG6eKP+/bWm/eXg9hrEm 5cAJrxl8P6WzA6qnCS1402E46hW2r/bRGG11y8R10Rf/kgRWprsd1utdIQdG7wez ru3W1Q7h6sPP3jbr5wd0/DotCOGc3tGsO1HNZmiiklKm2o3Jvzqypb5YX5cbib5C shHbC1mEqOugcthKlcbJchueAt5ZwPVoOkm9FuzJayaYAiQf52LSlmoJTJVETZOZ Ftn31Fi1WMtI6WhtHbCG4cNj581d4RyaKkuD6V6vg0gEOJOn0rAIwc8TscsgCd0K pZ702LNWf50e1a1ZeSjOB1IcHmh4tPMetvnfcjp6GWbAVejhSnRkPo6tzlFs7mqt aKiCvajVsmQPfiIKe9SV+f7KAYU6X34n6tGlHRot9N4jfNSO0Wpp0HeU7+q22N1m nHmP4cOaJFDNzF4KEEWxVPWDn19HEmv/jjLCq0UVfYlMx+uFuV6NxR6XEHyFtRTD 4VFU9dM9c9JMw+i46z+8DWwkSxpEfQS17nUziN6MxbTQwqPcD9JT8nL89oGyUBqw H25vwIXp7dYvVh0eW4Mi/dyNDI7ssvkWYSuNBxzovAYk25v0x9VO2HA9eS9secBR 3nsDIDVkCAF0ezKnsvchcRToPN6I4YetSaV+4crRL2dptCvV6YEtdABbxyK5PhnL 0cQRN3hIlW2punY= =Ep2R -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.8V2gnBlh/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 16 18:40:48 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-6.dsc dpkg-source: info: extracting tigr-glimmer in /<> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-fe628bc0-4d4f-4001-8e96-e2dc6b4b5edb SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean cd src; make clean make[2]: Entering directory '/<>/src' cd /<>/obj; rm -f cd /<>/lib; rm -f cd /<>/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /<>/src/Common clean ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; cd /<>/obj; rm -f delcher.o fasta.o gene.o cd /<>/lib; rm -f libGLMcommon.a cd /<>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM clean ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; cd /<>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<>/lib; rm -f libGLMicm.a cd /<>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer clean ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; cd /<>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<>/lib; rm -f cd /<>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util clean ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; cd /<>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<>/lib; rm -f cd /<>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" delcher.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" fasta.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" gene.o ; \ fi ; gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /<>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" icm.o ; \ fi ; icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-icm.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" build-fixed.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" score-fixed.o ; \ fi ; ################### libGLMicm.a ##################### cd /<>/obj && \ ar rvs /<>/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /<>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/build-icm -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/build-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/score-fixed -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" anomaly.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" glimmer3.o ; \ fi ; glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" long-orfs.o ; \ fi ; long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" test.o ; \ fi ; ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/anomaly -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<>/lib/libGLMcommon.a /<>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/long-orfs -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/test -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'mipsel-linux-gnu-g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-profile.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" entropy-score.o ; \ fi ; entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" multi-extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" start-codon-distrib.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" uncovered.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ mipsel-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<>/inc -I/../SYS/inc -I/<>/src/Common -I/<>/src/ICM -I/<>/src/Glimmer -I/<>/src/Util -I/<>/inc -o /<>/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /<>/obj \ " :/<>/obj" window-acgt.o ; \ fi ; ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/entropy-score -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/multi-extract -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/uncovered -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /<>/obj; \ mipsel-linux-gnu-gcc -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /<>/obj; \ mipsel-linux-gnu-g++ -o /<>/bin/window-acgt -Wl,-z,relro -Wl,-z,now \ -L/<>/lib -L/<>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<>/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<>/src/Common all ##### make[3]: Entering directory '/<>/src/Common' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Common' ##### Making Directory /<>/src/ICM all ##### make[3]: Entering directory '/<>/src/ICM' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/ICM' ##### Making Directory /<>/src/Glimmer all ##### make[3]: Entering directory '/<>/src/Glimmer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Glimmer' ##### Making Directory /<>/src/Util all ##### make[3]: Entering directory '/<>/src/Util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src/Util' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/tigr-glimmer/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_mipsel.deb'. dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-6_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../tigr-glimmer_3.02b-6_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-02T08:03:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-6_mipsel.changes: ------------------------------------ Format: 1.8 Date: Sat, 16 Oct 2021 20:37:42 +0200 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 3.02b-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 984367 Changes: tigr-glimmer (3.02b-6) unstable; urgency=medium . * d/rules: prevent CXXDEFS from setting __cplusplus (Closes: #984367) * d/control: add myself to uploaders * d/watch: fall back to http protocol to repair scan * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) Checksums-Sha1: 22e52306da18a6fb42119f17467ce6731fdd89d9 1354896 tigr-glimmer-dbgsym_3.02b-6_mipsel.deb 7c63482ace46e3a4ab6d633077039dbf0c637d2d 4912 tigr-glimmer_3.02b-6_mipsel.buildinfo c3340fd525550ac13b89fbd5bea620067e13e866 293552 tigr-glimmer_3.02b-6_mipsel.deb Checksums-Sha256: 1d788bddbb38b4ef8eb716c9bdbf4e594cf6fa47270fd0c7f8b9fe009d112c46 1354896 tigr-glimmer-dbgsym_3.02b-6_mipsel.deb 2fde3fabf01a125b0dd8fedaede74e8457d6bae6c5ad8766c5150eb621f805cc 4912 tigr-glimmer_3.02b-6_mipsel.buildinfo f01ae69dbe7a7ee32a6f87c01851e54818d94a9230ab7160b8ff65095147c82a 293552 tigr-glimmer_3.02b-6_mipsel.deb Files: 2e16763f9e6c39e0ddcb10e4503a3cf5 1354896 debug optional tigr-glimmer-dbgsym_3.02b-6_mipsel.deb 73c244c64ffbad7146e293f0f0ea92bf 4912 science optional tigr-glimmer_3.02b-6_mipsel.buildinfo 0bbeaf3b4851e98baba43fff509ce460 293552 science optional tigr-glimmer_3.02b-6_mipsel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Architecture: mipsel Version: 3.02b-6 Checksums-Md5: 2e16763f9e6c39e0ddcb10e4503a3cf5 1354896 tigr-glimmer-dbgsym_3.02b-6_mipsel.deb 0bbeaf3b4851e98baba43fff509ce460 293552 tigr-glimmer_3.02b-6_mipsel.deb Checksums-Sha1: 22e52306da18a6fb42119f17467ce6731fdd89d9 1354896 tigr-glimmer-dbgsym_3.02b-6_mipsel.deb c3340fd525550ac13b89fbd5bea620067e13e866 293552 tigr-glimmer_3.02b-6_mipsel.deb Checksums-Sha256: 1d788bddbb38b4ef8eb716c9bdbf4e594cf6fa47270fd0c7f8b9fe009d112c46 1354896 tigr-glimmer-dbgsym_3.02b-6_mipsel.deb f01ae69dbe7a7ee32a6f87c01851e54818d94a9230ab7160b8ff65095147c82a 293552 tigr-glimmer_3.02b-6_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 02 Nov 2021 08:03:03 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-4), bsdutils (= 1:2.37.2-4), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-10), dash (= 0.5.11+git20210903+057cd650a4ed-1), debconf (= 1.5.79), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-10), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-10), gcc-11-base (= 11.2.0-10), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10), libatomic1 (= 11.2.0-10), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-4), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-10), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-2), libgcc-11-dev (= 11.2.0-10), libgcc-s1 (= 11.2.0-10), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-2), libgomp1 (= 11.2.0-10), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-10), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-4), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libquadmath0 (= 11.2.0-10), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3+b1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-4), libssl1.1 (= 1.1.1l-1), libstdc++-11-dev (= 11.2.0-10), libstdc++6 (= 11.2.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-1), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-10), libubsan1 (= 11.2.0-10), libuchardet0 (= 0.0.7-1), libudev1 (= 249.5-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-4), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634409462" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer-dbgsym_3.02b-6_mipsel.deb -------------------------------------- new Debian package, version 2.0. size 1354896 bytes: control archive=1236 bytes. 925 bytes, 12 lines control 1573 bytes, 15 lines md5sums Package: tigr-glimmer-dbgsym Source: tigr-glimmer Version: 3.02b-6 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1562 Depends: tigr-glimmer (= 3.02b-6) Section: debug Priority: optional Description: debug symbols for tigr-glimmer Build-Ids: 14d6207f2444a6f2f8acc816f9391f1402d452ef 471302fec6c207ae106381461428cbc9d88e8db8 47aa41c28f52ed2fba686f1f47b3545d0119b217 4f92db8c419590813415199325a41675b3095c93 50d209d96f95416dd9e7393cfd53d4eb10a442d1 59e77b530c304b48db5fed2d9caf633a80547870 68274b87afb19785bbd2557a57e17ca9e9dc3edb 8e96b7166ee4ff18b43a5a0dd7a44b8e4f2fe091 9dde5e5054d09a55925806abd803ea7d6ce9df98 a0315dce09453a0e6ce9ba1151903d3e289de00d a9e6d88049070041c6021706ac721e4370606ce1 ce6e4a1308a2fa0daa4f2fc7f9268f3690871ad0 d7bd45e60d98f7e59f10a4e1bb494f9b7408cd51 debca7d2a84ec90066579696c2024380982c3749 drwxr-xr-x root/root 0 2021-10-16 18:37 ./ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 67200 2021-10-16 18:37 ./usr/lib/debug/.build-id/14/d6207f2444a6f2f8acc816f9391f1402d452ef.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/47/ -rw-r--r-- root/root 84744 2021-10-16 18:37 ./usr/lib/debug/.build-id/47/1302fec6c207ae106381461428cbc9d88e8db8.debug -rw-r--r-- root/root 78084 2021-10-16 18:37 ./usr/lib/debug/.build-id/47/aa41c28f52ed2fba686f1f47b3545d0119b217.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/4f/ -rw-r--r-- root/root 84160 2021-10-16 18:37 ./usr/lib/debug/.build-id/4f/92db8c419590813415199325a41675b3095c93.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/50/ -rw-r--r-- root/root 393680 2021-10-16 18:37 ./usr/lib/debug/.build-id/50/d209d96f95416dd9e7393cfd53d4eb10a442d1.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/59/ -rw-r--r-- root/root 41392 2021-10-16 18:37 ./usr/lib/debug/.build-id/59/e77b530c304b48db5fed2d9caf633a80547870.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/68/ -rw-r--r-- root/root 181032 2021-10-16 18:37 ./usr/lib/debug/.build-id/68/274b87afb19785bbd2557a57e17ca9e9dc3edb.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/8e/ -rw-r--r-- root/root 60624 2021-10-16 18:37 ./usr/lib/debug/.build-id/8e/96b7166ee4ff18b43a5a0dd7a44b8e4f2fe091.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/9d/ -rw-r--r-- root/root 106012 2021-10-16 18:37 ./usr/lib/debug/.build-id/9d/de5e5054d09a55925806abd803ea7d6ce9df98.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/a0/ -rw-r--r-- root/root 55544 2021-10-16 18:37 ./usr/lib/debug/.build-id/a0/315dce09453a0e6ce9ba1151903d3e289de00d.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/a9/ -rw-r--r-- root/root 62728 2021-10-16 18:37 ./usr/lib/debug/.build-id/a9/e6d88049070041c6021706ac721e4370606ce1.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 116756 2021-10-16 18:37 ./usr/lib/debug/.build-id/ce/6e4a1308a2fa0daa4f2fc7f9268f3690871ad0.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/d7/ -rw-r--r-- root/root 124832 2021-10-16 18:37 ./usr/lib/debug/.build-id/d7/bd45e60d98f7e59f10a4e1bb494f9b7408cd51.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.build-id/de/ -rw-r--r-- root/root 18616 2021-10-16 18:37 ./usr/lib/debug/.build-id/de/bca7d2a84ec90066579696c2024380982c3749.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/debug/.dwz/mipsel-linux-gnu/ -rw-r--r-- root/root 90996 2021-10-16 18:37 ./usr/lib/debug/.dwz/mipsel-linux-gnu/tigr-glimmer.debug drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer-dbgsym -> tigr-glimmer tigr-glimmer_3.02b-6_mipsel.deb ------------------------------- new Debian package, version 2.0. size 293552 bytes: control archive=1696 bytes. 749 bytes, 17 lines control 2466 bytes, 34 lines md5sums Package: tigr-glimmer Version: 3.02b-6 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 958 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2021-10-16 18:37 ./ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/bin/ -rwxr-xr-x root/root 412 2020-05-11 17:27 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2020-05-11 17:27 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 46084 2021-10-16 18:37 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 76120 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 76288 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 41768 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 42188 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 41892 2021-10-16 18:37 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 157568 2021-10-16 18:37 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 76660 2021-10-16 18:37 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 46212 2021-10-16 18:37 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 71860 2021-10-16 18:37 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 46272 2021-10-16 18:37 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 15268 2021-10-16 18:37 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 28320 2021-10-16 18:37 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 19904 2021-10-16 18:37 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 228 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/NEWS.Debian.gz -rw-r--r-- root/root 957 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 1986 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1062 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2021-10-16 18:37 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2021-10-16 18:37 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2021-10-16 18:37 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2021-10-16 18:37 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2021-10-16 18:37 ./usr/share/man/man1/tigr-run-glimmer3.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [534 B] Get:5 copy:/<>/apt_archive ./ Packages [622 B] Fetched 2119 B in 0s (82.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:mipsel t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7602 kB of archives. After this operation, 21.9 MB of additional disk space will be used. 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libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.111.0 [1340 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7602 kB in 0s (25.0 MB/s) Selecting previously unselected package diffstat. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.111.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 31972 Build-Time: 45 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 40 Job: tigr-glimmer_3.02b-6 Lintian: pass Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 97 Source-Version: 3.02b-6 Space: 31972 Status: successful Version: 3.02b-6 -------------------------------------------------------------------------------- Finished at 2021-11-02T08:03:03Z Build needed 00:01:37, 31972k disk space