sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | tracetuner 3.0.6~beta+dfsg-3 (armhf) Wed, 03 Apr 2024 01:30:00 +0000 | +==============================================================================+ Package: tracetuner Version: 3.0.6~beta+dfsg-3 Source Version: 3.0.6~beta+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-f7fe9c5d-09c5-4f20-8e9b-952d1e432908' with '<>' I: NOTICE: Log filtering will replace 'build/tracetuner-wcNUBj/resolver-PggIDY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main armhf Packages [9462 kB] Fetched 9462 kB in 1s (7588 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tracetuner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tracetuner.git Please use: git clone https://salsa.debian.org/med-team/tracetuner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 395 kB of source archives. Get:1 http://localhost:3142/debian sid/main tracetuner 3.0.6~beta+dfsg-3 (dsc) [2054 B] Get:2 http://localhost:3142/debian sid/main tracetuner 3.0.6~beta+dfsg-3 (tar) [385 kB] Get:3 http://localhost:3142/debian sid/main tracetuner 3.0.6~beta+dfsg-3 (diff) [7920 B] Fetched 395 kB in 1s (433 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tracetuner-wcNUBj/tracetuner-3.0.6~beta+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/tracetuner-wcNUBj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [726 B] Get:5 copy:/<>/apt_archive ./ Packages [769 B] Fetched 2104 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libstdc++-13-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 82.1 MB of archives. After this operation, 315 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-11 [89.8 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-4 [1409 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.42-4 [3216 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-12cross1 [42.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-12cross1 [9286 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.2.0-7 [4732 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-12cross1 [868 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 14-20240127-1cross1 [36.9 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 14-20240127-1cross1 [108 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 14-20240127-1cross1 [6768 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 14-20240127-1cross1 [2567 kB] Get:31 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 14-20240127-1cross1 [560 kB] Get:32 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 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sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:63 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1 [189 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sid/main armhf libasan8 armhf 14-20240330-1 [2578 kB] Get:76 http://localhost:3142/debian sid/main armhf libatomic1 armhf 14-20240330-1 [7044 B] Get:77 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-4 [96.1 kB] Get:78 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-4 [125 kB] Get:79 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-15.1 [1268 kB] Get:80 http://localhost:3142/debian sid/main armhf libgomp1 armhf 14-20240330-1 [111 kB] Get:81 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 14-20240330-1 [607 kB] Get:82 http://localhost:3142/debian sid/main armhf libubsan1 armhf 14-20240330-1 [1037 kB] Get:83 http://localhost:3142/debian sid/main armhf libgcc-13-dev armhf 13.2.0-23 [781 kB] Get:84 http://localhost:3142/debian sid/main armhf libstdc++-13-dev armhf 13.2.0-23 [2263 kB] Get:85 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.3.dfsg-3.1 [74.4 kB] Get:86 http://localhost:3142/debian sid/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.1 MB in 0s (191 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Setting up file (1:5.45-3) ... Setting up libatomic1-armhf-cross (14-20240127-1cross1) ... Setting up libyaml-perl (1.31-1) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:armhf (13.2.0-23) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-arm-linux-gnueabihf-base:amd64 (13.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up binutils-arm-linux-gnueabihf (2.42-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14-20240127-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (14-20240127-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14-20240127-1cross1) ... Setting up libubsan1-armhf-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up libasan8-armhf-cross (14-20240127-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armhf-cross (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (14-20240330-1) ... Setting up libc6:armhf (2.37-15.1) ... Setting up libasan8:armhf (14-20240330-1) ... Setting up libstdc++6:armhf (14-20240330-1) ... Setting up zlib1g:armhf (1:1.3.dfsg-3.1) ... Setting up libcrypt1:armhf (1:4.4.36-4) ... Setting up libgomp1:armhf (14-20240330-1) ... Setting up libatomic1:armhf (14-20240330-1) ... Setting up libubsan1:armhf (14-20240330-1) ... Setting up libgcc-13-dev:armhf (13.2.0-23) ... Setting up libcrypt-dev:armhf (1:4.4.36-4) ... Setting up libc6-dev:armhf (2.37-15.1) ... Setting up libstdc++-13-dev:armhf (13.2.0-23) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-armhf-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-armhf-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-arm-linux-gnueabihf_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-11 bsdutils_1:2.39.3-11 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-23 cpp-13-arm-linux-gnueabihf_13.2.0-12cross1 cpp-13-x86-64-linux-gnu_13.2.0-23 cpp-arm-linux-gnueabihf_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-armhf_12.10 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-23 g++-13-arm-linux-gnueabihf_13.2.0-12cross1 g++-13-x86-64-linux-gnu_13.2.0-23 g++-arm-linux-gnueabihf_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-23 gcc-13-arm-linux-gnueabihf_13.2.0-12cross1 gcc-13-arm-linux-gnueabihf-base_13.2.0-12cross1 gcc-13-base_13.2.0-23 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-23 gcc-14-base_14-20240330-1 gcc-14-cross-base_14-20240127-1cross1 gcc-arm-linux-gnueabihf_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libasan8-armhf-cross_14-20240127-1cross1 libatomic1_14-20240330-1 libatomic1-armhf-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.39.3-11 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-15.1 libc-dev-bin_2.37-15.1 libc6_2.37-15.1 libc6-armhf-cross_2.37-12cross1 libc6-dev_2.37-15.1 libc6-dev-armhf-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240330-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-23 libgcc-13-dev-armhf-cross_13.2.0-12cross1 libgcc-s1_14-20240330-1 libgcc-s1-armhf-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.4-2 libgomp1_14-20240330-1 libgomp1-armhf-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14-20240330-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240330-1 libjansson4_2.14-2+b2 liblocale-gettext-perl_1.07-7 liblsan0_14-20240330-1 liblz4-1_1.9.4-1+b2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.39.3-11 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.9.1-2.2 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-6 libpam-modules-bin_1.5.3-6 libpam-runtime_1.5.3-6 libpam0t64_1.5.3-4 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-3.2 libpipeline1_1.5.7-2 libquadmath0_14-20240330-1 libseccomp2_2.5.5-1 libselinux1_3.5-2+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2 libsframe1_2.42-4 libsmartcols1_2.39.3-11 libssl3t64_3.1.5-1.1 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-armhf-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-armhf-cross_14-20240127-1cross1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240330-1 libubsan1_14-20240330-1 libubsan1-armhf-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.2-1 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tracetuner Binary: tracetuner Architecture: any Version: 3.0.6~beta+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sourceforge.net/projects/tracetuner/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/tracetuner Vcs-Git: https://salsa.debian.org/med-team/tracetuner.git Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: tracetuner deb science optional arch=any Checksums-Sha1: b906dd41bad02c457fe780100f1338b8d549497a 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 7d39c02ac0576b6aeb23f5b9dd3648039e973070 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz Checksums-Sha256: 24190cef98d7f6faaac35306c496d8fe16d72991da89d25cc589dcd5619938e0 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 917cdcb50d7b260af00c7500741db275e4a26428ae8a48acf2e228d6c6f131a2 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz Files: 1662eaa5444391d0e824ee565ee3fa29 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz f2f51592513f7b51710b12bf3f9bd33e 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KvegRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFfiQ//c/PDsFOmIqhHrhWNd1h5QI26kVh9RgtA xJlrSg6qJv81VSlZC6LjqjL/Rz09Fcw1hZ+1kP3A+dK6gMjnPEXtB0e9gCT+5rBF aomlL5ElsWJVk1zf6ik+Rs0Fsf5qzLKGSdhMr4QJYqMJ9gc5a1DOBMguJHhPZPWe /gqjUuE/cF4tJfuhzQUU/yU40UXK6UZu91v2uI/J26Esjqtm1ACHR+YVYFaHT5/9 bYRBfanbl+0rVjRrL8o1rmsVojh7DM0c5n9UuElqcn/ZnyxK/esQsDnlJ3H8mIc9 4ujM61iX4jPBH28ZywoQhs0wBCHFJPCyQLqo9GZkKsM4AKDAKhv5uR+M8rqjfwk8 +LLFPxuj8ukRRmVSOIXXmjw0WXTHB/ESI9QlN1EE4u1Ua/q1C2L/fEZz6MlRvVwL PRVZNhXsMsd/L6a1r7iAvGt4YVJ5jg/Rhr+gsnzrbHPyzTa3duVoTrZXyph8k+YK ipOj8HxEqaY+XUADGhyPkU7bg3zz1ZuRiRi9ucWW5X47Vs3jYp1EkDDCiiSubSZ+ SEr99ovDWDAFnJvDc5B38gUmKZA2pkvBILccxsyVOCACzQVnu5AzSgvYzlKTi+Ox n4sCMf1ykRYy/hv3pHbcrDOxNUxlEQxrQ1pHbSrkVUKhQ/X8i8GcvHUvWjfPMues CWtBrd/wubQ= =Na18 -----END PGP SIGNATURE----- gpgv: Signature made Fri Dec 4 22:53:28 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tracetuner_3.0.6~beta+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting tracetuner in /<> dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg.orig.tar.xz dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_format_security.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.yOfqw1VaHu/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-f7fe9c5d-09c5-4f20-8e9b-952d1e432908 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tracetuner dpkg-buildpackage: info: source version 3.0.6~beta+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean cd src && make -j1 clean make[2]: Entering directory '/<>/src' cd compute_qv; make clean make[3]: Entering directory '/<>/src/compute_qv' make[3]: Leaving directory '/<>/src/compute_qv' cd mktrain; make clean make[3]: Entering directory '/<>/src/mktrain' make[3]: Leaving directory '/<>/src/mktrain' cd mklut; make clean make[3]: Entering directory '/<>/src/mklut' make[3]: Leaving directory '/<>/src/mklut' cd mkchk; make clean make[3]: Entering directory '/<>/src/mkchk' make[3]: Leaving directory '/<>/src/mkchk' make[2]: Leaving directory '/<>/src' rm -rf lib obj rel make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/tracetuner.substvars debian/files rm -fr -- debian/tracetuner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --sourcedirectory=src --no-parallel dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>/src' for dir in compute_qv mktrain mklut mkchk ; \ do (cd $dir; make EXTRACFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic" LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" all); \ done make[2]: Entering directory '/<>/src/compute_qv' mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o ../../obj/Linux_64/main.o main.c: In function ‘main’: main.c:2000:45: warning: the comparison will always evaluate as ‘true’ for the address of ‘ConsensusName’ will never be NULL [-Waddress] 2000 | if (ConsensusSpecified && ConsensusName != NULL) { | ^~ main.c:73:13: note: ‘ConsensusName’ declared here 73 | static char ConsensusName[BUFLEN]; /* path of consensus file */ | ^~~~~~~~~~~~~ main.c:1692:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1692 | (void)strncpy(options.tal_dir, argv[++optind], | ^ main.c:1676:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1676 | (void)strncpy(options.tab_dir, argv[++optind], | ^ main.c:1663:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1663 | (void)strncpy(options.tip_dir, argv[++optind], | ^ main.c:1644:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1644 | strncpy(FastaDirName, argv[++optind], sizeof(FastaDirName)); | ^ main.c:1636:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1636 | strncpy(multiseqFileName, argv[++optind], | ^ main.c:1587:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1587 | strncpy(QualRptName, argv[++optind], sizeof(QualRptName)); | ^ main.c:1580:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1580 | strncpy(QualDirName, argv[++optind], sizeof(QualDirName)); | ^ main.c:1572:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1572 | strncpy(multiqualFileName, argv[++optind], | ^ main.c:1546:21: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1546 | strncpy(MultiFastaFilesDirName, argv[++optind], | ^ main.c:1485:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1485 | (void)strncpy(options.inp_phd_dir, argv[++optind], | ^ main.c:1450:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1450 | (void)strncpy(options.hpr_dir, argv[++optind], | ^ main.c:1421:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1421 | (void)strncpy(InputName, argv[++optind], | ^ main.c:1386:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1386 | (void)strncpy(InputName, argv[++optind], | ^ main.c:1391:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1391 | (void)strncpy(PhdDirName, argv[++optind], | ^ main.c:1397:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1397 | (void)strncpy(SCFDirName, argv[++optind], | ^ main.c:1400:27: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 999 [-Wstringop-truncation] 1400 | (void)strncpy(options.scf_dir, SCFDirName, | ^ main.c:1376:27: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1376 | (void)strncpy(options.poly_dir, argv[++optind], | ^ main.c:1346:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1346 | (void)strncpy(ConsensusName, argv[++optind], | ^ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_match_data.c -o ../../obj/Linux_64/Btk_match_data.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_compute_match.c -o ../../obj/Linux_64/Btk_compute_match.o ../mktrain/Btk_compute_match.c: In function ‘find_best_region’: ../mktrain/Btk_compute_match.c:658:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 658 | else | ^~~~ ../mktrain/Btk_compute_match.c:660:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 660 | max=i; | ^~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_sw.c -o ../../obj/Linux_64/Btk_sw.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_indels.c -o ../../obj/Linux_64/Btk_process_indels.o Btk_process_indels.c: In function ‘get_autocorrelation_indel_size’: Btk_process_indels.c:644:42: warning: variable ‘max_height’ set but not used [-Wunused-but-set-variable] 644 | float *ans[NUM_COLORS], height = 0., max_height = 0.; | ^~~~~~~~~~ Btk_process_indels.c:642:25: warning: variable ‘best_color’ set but not used [-Wunused-but-set-variable] 642 | int i, j, color, best_color, n=1; | ^~~~~~~~~~ Btk_process_indels.c: In function ‘get_autocorrelation’: Btk_process_indels.c:409:5: warning: ‘correl’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 409 | correl(data1-1, data2-1, n, ans-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Btk_process_indels.c:409:5: note: referencing argument 1 of type ‘float[0]’ Btk_process_indels.c:409:5: warning: ‘correl’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] Btk_process_indels.c:409:5: note: referencing argument 2 of type ‘float[0]’ Btk_process_indels.c:409:5: note: referencing argument 4 of type ‘float[0]’ In file included from Btk_process_indels.c:39: nr.h:54:6: note: in a call to function ‘correl’ 54 | void correl(float data1[], float data2[], unsigned long n, float ans[]); | ^~~~~~ Btk_process_indels.c: In function ‘Btk_process_indels’: Btk_process_indels.c:2471:9: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2471 | strncpy(prefix_name, options.file_name, prefix_len-1); | ^ Btk_process_indels.c:2470:22: note: length computed here 2470 | prefix_len = strlen(options.file_name) - strlen(suffix); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_atod.c -o ../../obj/Linux_64/Btk_atod.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_qv.c -o ../../obj/Linux_64/Btk_compute_qv.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_call_bases.c -o ../../obj/Linux_64/Btk_call_bases.o Btk_call_bases.c: In function ‘get_best_peak_color_and_index_by_base_and_location’: Btk_call_bases.c:2988:28: warning: variable ‘new_location’ set but not used [-Wunused-but-set-variable] 2988 | int new_peak_index, new_location = location; | ^~~~~~~~~~~~ Btk_call_bases.c: In function ‘call_peak_by_location_color_and_index’: Btk_call_bases.c:3199:41: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 3199 | int i = base_ind, jc = color, j, l, r, k; | ^ Btk_call_bases.c: In function ‘mark_called_peaks’: Btk_call_bases.c:3547:28: warning: variable ‘cd_length’ set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~~ Btk_call_bases.c:3547:18: warning: variable ‘cd_index’ set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~ Btk_call_bases.c: In function ‘Btk_call_bases’: Btk_call_bases.c:3697:32: warning: variable ‘cweight’ set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3697:23: warning: variable ‘nweight’ set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3691:14: warning: variable ‘debug’ set but not used [-Wunused-but-set-variable] 3691 | char *debug, base, *context=NULL; | ^~~~~ Btk_call_bases.c: At top level: Btk_call_bases.c:117:25: warning: ‘gSpacEst0’ defined but not used [-Wunused-const-variable=] 117 | static const double gSpacEst0 = 12.0; | ^~~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_raw_data.c -o ../../obj/Linux_64/Btk_process_raw_data.o Btk_process_raw_data.c: In function ‘estimate_spacing_variation_of_shifted_peaks’: Btk_process_raw_data.c:1142:26: warning: variable ‘cd1’ set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c:1142:20: warning: variable ‘cd0’ set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c: In function ‘make_DP_mobility_shifts’: Btk_process_raw_data.c:2299:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2299 | if (DEBUG_CURTIS && options->Verbose > 2 ) | ^~ Btk_process_raw_data.c:2300:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2300 | putc('o', stderr); fflush(stderr); | ^~~~~~ Btk_process_raw_data.c:2650:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2650 | for ( color=0; color < NUM_COLORS; color++ ) | ^~~ Btk_process_raw_data.c:2652:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2652 | fprintf(fp, " %8.3g\n", shift_err[i]); | ^~~~~~~ Btk_process_raw_data.c: In function ‘normalize_signals’: Btk_process_raw_data.c:2956:40: warning: ordered comparison of pointer with integer zero [-Wpedantic] 2956 | norm_factor[i] = (num_peaks>0) ? ave_int[i][m] : -1; | ^ Btk_process_raw_data.c: In function ‘make_multicomponent_iteration’: Btk_process_raw_data.c:3305:21: warning: variable ‘best_pos’ set but not used [-Wunused-but-set-variable] 3305 | int best_pos; | ^~~~~~~~ Btk_process_raw_data.c:3247:15: warning: variable ‘det4’ set but not used [-Wunused-but-set-variable] 3247 | float det4; | ^~~~ Btk_process_raw_data.c: In function ‘mobility_shift_curve’: Btk_process_raw_data.c:1257:5: warning: ‘fpoly’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 1257 | fpoly(scan, powers-1, poly_degree); // compute powers of scan; put in array p | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Btk_process_raw_data.c:1257:5: note: referencing argument 2 of type ‘float[0]’ In file included from Btk_process_raw_data.c:44: util.h:49:6: note: in a call to function ‘fpoly’ 49 | void fpoly(float x, float p[], int np); | ^~~~~ Btk_process_raw_data.c: In function ‘make_DP_mobility_shifts’: Btk_process_raw_data.c:2567:17: warning: ‘fpoly’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 2567 | fpoly(peaks[i]->ipos+shift_flag[color], powers-1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2568 | POLYFIT_DEGREE+1); | ~~~~~~~~~~~~~~~~~ Btk_process_raw_data.c:2567:17: note: referencing argument 2 of type ‘float[0]’ util.h:49:6: note: in a call to function ‘fpoly’ 49 | void fpoly(float x, float p[], int np); | ^~~~~ Btk_process_raw_data.c: In function ‘make_DP_mobility_shifts.isra’: Btk_process_raw_data.c:2567:17: warning: array subscript -1 is outside array bounds of ‘float[6]’ [-Warray-bounds=] 2567 | fpoly(peaks[i]->ipos+shift_flag[color], powers-1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2568 | POLYFIT_DEGREE+1); | ~~~~~~~~~~~~~~~~~ Btk_process_raw_data.c:1992:19: note: at offset -4 into object ‘powers’ of size 24 1992 | float powers[POLYFIT_DEGREE+1]; | ^~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o ../../obj/Linux_64/util.o util.c: In function ‘mobShiftQuality’: util.c:980:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 980 | int count[MAX_CHUNKS]; | ^~~~~ util.c: In function ‘polyfit’: util.c:192:5: warning: ‘lfit’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 192 | lfit(x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, fpoly); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ util.c:192:5: note: referencing argument 6 of type ‘int[0]’ In file included from util.c:45: nr.h:63:6: note: in a call to function ‘lfit’ 63 | void lfit(float x[], float y[], float sig[], int ndat, float a[], int ia[], | ^~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c nr.c -o ../../obj/Linux_64/nr.o nr.c: In function ‘gaussj’: nr.c:487:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 487 | if (ipiv[j] != 1) | ^~ nr.c:497:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 497 | ++(ipiv[icol]); | ^~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_peaks.c -o ../../obj/Linux_64/Btk_process_peaks.o Btk_process_peaks.c: In function ‘colordata_detect_peaks’: Btk_process_peaks.c:524:45: warning: variable ‘relative_width’ set but not used [-Wunused-but-set-variable] 524 | sum_peak_width, average10_width, relative_width; | ^~~~~~~~~~~~~~ Btk_process_peaks.c: In function ‘add_one_peak’: Btk_process_peaks.c:2307:35: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~ Btk_process_peaks.c:2307:17: warning: variable ‘peak1’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c:2307:10: warning: variable ‘peak0’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c: In function ‘fit_single_peak’: Btk_process_peaks.c:2651:45: warning: variable ‘x2’ set but not used [-Wunused-but-set-variable] 2651 | double sum_exp = 0., sum_exp2 = 0., x2, B; | ^~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_io.c -o ../../obj/Linux_64/Btk_qv_io.o Btk_qv_io.c: In function ‘Btk_read_sample_file’: Btk_qv_io.c:770:46: warning: ordered comparison of pointer with integer zero [-Wpedantic] 770 | if ((options.inp_phd == 0) && (num_bases > 0)) { | ^ Btk_qv_io.c:649:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 649 | fread(magic, 1, 2, fp); | ^~~~~~~~~~~~~~~~~~~~~~ Btk_qv_io.c: In function ‘output_scf_file’: Btk_qv_io.c:2636:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 2636 | strncpy(header.version, (scf_version == 2) ? "2.00" : "3.00", 4); | ^ Btk_qv_io.c: In function ‘Btk_read_sample_file’: Btk_qv_io.c:945:66: warning: ‘%s’ directive writing up to 999 bytes into a region of size 231 [-Wformat-overflow=] 945 | sprintf(message->text, "Could not read phd file: %s\n", | ^~ 946 | phd_file_name); | ~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:906, from Btk_qv_io.c:27: In function ‘sprintf’, inlined from ‘Btk_read_sample_file’ at Btk_qv_io.c:945:17: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1026 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Btk_qv_io.c: In function ‘Btk_read_sample_file’: Btk_qv_io.c:918:62: warning: ‘%s’ directive writing up to 999 bytes into a region of size 231 [-Wformat-overflow=] 918 | sprintf(message->text, "Could not read phd file: %s\n", | ^~ 919 | phd_file_name); | ~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘Btk_read_sample_file’ at Btk_qv_io.c:918:13: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 27 and 1026 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Btk_qv_io.c: In function ‘Btk_output_poly_file’: Btk_qv_io.c:2962:59: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 230 [-Wformat-overflow=] 2962 | sprintf(message->text, "Unable to open POLY file '%s'\n", | ^~ 2963 | poly_name); | ~~~~~~~~~ In function ‘sprintf’, inlined from ‘Btk_output_poly_file’ at Btk_qv_io.c:2962:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 29 and 1052 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Btk_qv_io.c: In function ‘Btk_output_poly_file_old’: Btk_qv_io.c:3104:59: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 230 [-Wformat-overflow=] 3104 | sprintf(message->text, "Unable to open POLY file '%s'\n", | ^~ 3105 | poly_name); | ~~~~~~~~~ In function ‘sprintf’, inlined from ‘Btk_output_poly_file_old’ at Btk_qv_io.c:3104:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 29 and 1052 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tp.c -o ../../obj/Linux_64/Btk_compute_tp.o Btk_compute_tp.c: In function ‘get_peak_height_ratio’: Btk_compute_tp.c:340:58: warning: variable ‘bad_ipos’ set but not used [-Wunused-but-set-variable] 340 | double max_uncalled_ipos = -1, min_called_ipos = -1, bad_ipos; | ^~~~~~~~ Btk_compute_tp.c: In function ‘get_peak_spacing_ratio’: Btk_compute_tp.c:394:17: warning: variable ‘bad_ipos’ set but not used [-Wunused-but-set-variable] 394 | double psr, bad_ipos, ipos; | ^~~~~~~~ Btk_compute_tp.c: At top level: Btk_compute_tp.c:634:54: warning: argument 3 of type ‘double *[4]’ with mismatched bound [-Warray-parameter=] 634 | Btk_compute_tp(Data *data, char *color2base, double *params[NUM_PARAMS], | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from Btk_compute_tp.c:48: Btk_compute_tp.h:31:43: note: previously declared as ‘double *[]’ 31 | extern int Btk_compute_tp(Data *, char *, double *[], ReadInfo *, | ^~~~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tpars.c -o ../../obj/Linux_64/Btk_compute_tpars.o Btk_compute_tpars.c: In function ‘data_create’: Btk_compute_tpars.c:215:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] 215 | (void)memset(data, 0, sizeof(data)); | ^ Btk_compute_tpars.c: In function ‘Btk_compute_tpars’: Btk_compute_tpars.c:804:38: warning: the comparison will always evaluate as ‘false’ for the address of ‘color_data’ will never be NULL [-Waddress] 804 | if ((&data.color_data[i] == NULL) || | ^~ In file included from Btk_compute_tpars.c:42: Btk_qv_data.h:150:16: note: ‘color_data’ declared here 150 | ColorData color_data[NUM_COLORS]; /* chromatograms */ | ^~~~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_get_mixed_bases.c -o ../../obj/Linux_64/Btk_get_mixed_bases.o Btk_get_mixed_bases.c: In function ‘mixed_base’: Btk_get_mixed_bases.c:142:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 142 | else if (((b1 == 'G') && (b2 == 'T')) || ((b1 == 'T') && (b2 == 'G'))) | ^~ Btk_get_mixed_bases.c:145:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 145 | return 'N'; | ^~~~~~ Btk_get_mixed_bases.c: In function ‘find_alternative_peaks’: Btk_get_mixed_bases.c:473:34: warning: ordered comparison of pointer with integer zero [-Wpedantic] 473 | if ((num_peaks_found > 0) && | ^ Btk_get_mixed_bases.c: In function ‘call_mixed_bases’: Btk_get_mixed_bases.c:744:55: warning: variable ‘cweight’ set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:744:43: warning: variable ‘nweight’ set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:740:24: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] 740 | int i, j, k, n, pos, jbest, kbest, curr_num2, prev_right_bound=0; | ^~~ Btk_get_mixed_bases.c:739:25: warning: variable ‘context’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~~~ Btk_get_mixed_bases.c:739:18: warning: variable ‘base2’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~ Btk_get_mixed_bases.c:739:12: warning: variable ‘base’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~ Btk_get_mixed_bases.c: In function ‘Btk_get_mixed_bases’: Btk_get_mixed_bases.c:1365:31: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~ Btk_get_mixed_bases.c:1365:23: warning: variable ‘wratio’ set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~~~~ In file included from Btk_get_mixed_bases.c:34: Btk_qv.h:119:23: warning: ‘altbases’ may be used uninitialized [-Wmaybe-uninitialized] 119 | #define FREE(x) if((x)!=NULL) {free((char *)(x));(x)=NULL;} | ^ Btk_get_mixed_bases.c:1439:5: note: in expansion of macro ‘FREE’ 1439 | FREE(altbases); | ^~~~ Btk_get_mixed_bases.c:1206:14: note: ‘altbases’ declared here 1206 | AltBase *altbases; | ^~~~~~~~ Btk_qv.h:119:23: warning: ‘altbases’ may be used uninitialized [-Wmaybe-uninitialized] 119 | #define FREE(x) if((x)!=NULL) {free((char *)(x));(x)=NULL;} | ^ Btk_get_mixed_bases.c:1439:5: note: in expansion of macro ‘FREE’ 1439 | FREE(altbases); | ^~~~ Btk_get_mixed_bases.c:1206:14: note: ‘altbases’ declared here 1206 | AltBase *altbases; | ^~~~~~~~ Btk_qv.h:119:23: warning: ‘altbases’ may be used uninitialized [-Wmaybe-uninitialized] 119 | #define FREE(x) if((x)!=NULL) {free((char *)(x));(x)=NULL;} | ^ Btk_get_mixed_bases.c:1439:5: note: in expansion of macro ‘FREE’ 1439 | FREE(altbases); | ^~~~ Btk_get_mixed_bases.c:1206:14: note: ‘altbases’ declared here 1206 | AltBase *altbases; | ^~~~~~~~ Btk_qv.h:119:23: warning: ‘altbases’ may be used uninitialized [-Wmaybe-uninitialized] 119 | #define FREE(x) if((x)!=NULL) {free((char *)(x));(x)=NULL;} | ^ Btk_get_mixed_bases.c:1439:5: note: in expansion of macro ‘FREE’ 1439 | FREE(altbases); | ^~~~ Btk_get_mixed_bases.c:1206:14: note: ‘altbases’ declared here 1206 | AltBase *altbases; | ^~~~~~~~ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_lookup_table.c -o ../../obj/Linux_64/Btk_lookup_table.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_funs.c -o ../../obj/Linux_64/Btk_qv_funs.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ABI_Toolkit.c -o ../../obj/Linux_64/ABI_Toolkit.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_default_table.c -o ../../obj/Linux_64/Btk_default_table.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c FileHandler.c -o ../../obj/Linux_64/FileHandler.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c SCF_Toolkit.c -o ../../obj/Linux_64/SCF_Toolkit.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c context_table.c -o ../../obj/Linux_64/context_table.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c tracepoly.c -o ../../obj/Linux_64/tracepoly.o tracepoly.c: In function ‘gaussj’: tracepoly.c:631:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 631 | if (ipiv[j] != 1) | ^~ tracepoly.c:641:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 641 | ++(ipiv[icol]); | ^~ tracepoly.c: At top level: tracepoly.c:1111:29: warning: argument 2 of type ‘double[4][4000]’ with mismatched bound [-Warray-parameter=] 1111 | double xx_a[4][MaxNumBases], double yy_a[4][MaxNumBases], | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from tracepoly.c:37: tracepoly.h:64:37: note: previously declared as ‘double[][4000]’ 64 | int readGetCoefficients(ReadInfo *, double [][MaxNumBases], | ^~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:1111:58: warning: argument 3 of type ‘double[4][4000]’ with mismatched bound [-Warray-parameter=] 1111 | double xx_a[4][MaxNumBases], double yy_a[4][MaxNumBases], | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ tracepoly.h:65:25: note: previously declared as ‘double[][4000]’ 65 | double [][MaxNumBases], int [], int); | ^~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:1112:26: warning: argument 4 of type ‘int[4]’ with mismatched bound [-Warray-parameter=] 1112 | int num_xy_a[4], int read_num ) | ~~~~^~~~~~~~~~~ tracepoly.h:65:49: note: previously declared as ‘int[]’ 65 | double [][MaxNumBases], int [], int); | ^~~~~~ tracepoly.c: In function ‘func_legendre_1based’: tracepoly.c:137:9: warning: ‘func_legendre_1based_sub’ accessing 8 bytes in a region of size 0 [-Wstringop-overflow=] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:137:9: note: referencing argument 3 of type ‘double[0]’ tracepoly.c:103:1: note: in a call to function ‘func_legendre_1based_sub’ 103 | func_legendre_1based_sub( FuncArgs* fa, double x, double pl[], int nl ) | ^~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘legendre_fit’: tracepoly.c:790:5: warning: ‘lfit’ accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:790:5: note: referencing argument 7 of type ‘int[0]’ tracepoly.c:699:1: note: in a call to function ‘lfit’ 699 | lfit(FuncArgs* fa, | ^~~~ tracepoly.c: In function ‘func_legendre_1based’: tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of ‘double[3]’ [-Warray-bounds=] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: at offset -8 into object ‘ptemp0’ of size 24 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:12: note: at offset -8 into object ‘xxxx’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:33: note: at offset -8 into object ‘yyyy’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:54: note: at offset -8 into object ‘sigma’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:12: note: at offset -8 into object ‘xxxx’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:33: note: at offset -8 into object ‘yyyy’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ In function ‘legendre_fit’, inlined from ‘traceGetCoef.isra’ at tracepoly.c:947:9: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds=] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceGetCoef.isra’: tracepoly.c:895:54: note: at offset -8 into object ‘sigma’ of size 64000 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ In function ‘func_legendre_1based’, inlined from ‘func_legendre_0based’ at tracepoly.c:153:5, inlined from ‘traceEvalPoly’ at tracepoly.c:839:5: tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of ‘double[3]’ [-Warray-bounds=] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function ‘traceEvalPoly’: tracepoly.c:132:27: note: at offset -8 into object ‘ptemp0’ of size 24 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ /usr/bin/ar rc ../../lib/Linux_64/libtt.a ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_sw.o ../../obj/Linux_64/Btk_process_indels.o ../../obj/Linux_64/Btk_atod.o ../../obj/Linux_64/Btk_compute_qv.o ../../obj/Linux_64/Btk_call_bases.o ../../obj/Linux_64/Btk_process_raw_data.o ../../obj/Linux_64/util.o ../../obj/Linux_64/nr.o ../../obj/Linux_64/Btk_process_peaks.o ../../obj/Linux_64/Btk_qv_io.o ../../obj/Linux_64/Btk_compute_tp.o ../../obj/Linux_64/Btk_compute_tpars.o ../../obj/Linux_64/Btk_get_mixed_bases.o ../../obj/Linux_64/Btk_lookup_table.o ../../obj/Linux_64/Btk_qv_funs.o ../../obj/Linux_64/ABI_Toolkit.o ../../obj/Linux_64/Btk_default_table.o ../../obj/Linux_64/FileHandler.o ../../obj/Linux_64/SCF_Toolkit.o ../../obj/Linux_64/context_table.o ../../obj/Linux_64/tracepoly.o arm-linux-gnueabihf-gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/main.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/ttuner -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/<>/src/compute_qv' make[2]: Entering directory '/<>/src/mktrain' mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c train.c -o ../../obj/Linux_64/train.o train.c: In function ‘main’: train.c:1431:26: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1431 | (void)strncpy(InputName, argv[++optind], sizeof(InputName)); | ^ train.c:1400:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1400 | (void)strncpy(OutputName, argv[++optind], sizeof(OutputName)); | ^ train.c:1357:27: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1357 | (void)strncpy(inp_phd_dir, argv[++optind], | ^ train.c:1511:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1511 | (void)strncpy(VectorName, argv[++optind], sizeof(VectorName)); | ^ train.c:1501:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1501 | (void)strncpy(SiteName, argv[++optind], sizeof(SiteName)); break; | ^ train.c:1437:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1437 | (void)strncpy(PrimerName, argv[++optind], sizeof(PrimerName)); | ^ train.c:1297:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1297 | (void)strncpy(ConsensusName, argv[++optind], | ^ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c train_data.c -o ../../obj/Linux_64/train_data.o train_data.c: In function ‘append_to_train_data’: train_data.c:217:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 217 | if (Verbose > 0) | ^~ train_data.c:220:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 220 | fprintf(fout, "# Clear range start :%4d end:%4d\n", | ^~~~~~~ arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/train.o ../../obj/Linux_64/train_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_sw.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/train -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c trainphd.c -o ../../obj/Linux_64/trainphd.o trainphd.c: In function ‘process_projectfile’: trainphd.c:653:13: warning: variable ‘buffer2’ set but not used [-Wunused-but-set-variable] 653 | char buffer2[BUFLEN]; | ^~~~~~~ trainphd.c: In function ‘main’: trainphd.c:931:35: error: format not a string literal and no format arguments [-Werror=format-security] 931 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:940:35: error: format not a string literal and no format arguments [-Werror=format-security] 940 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:959:40: error: format not a string literal and no format arguments [-Werror=format-security] 959 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:967:44: error: format not a string literal and no format arguments [-Werror=format-security] 967 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1011:40: error: format not a string literal and no format arguments [-Werror=format-security] 1011 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1018:40: error: format not a string literal and no format arguments [-Werror=format-security] 1018 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1084:40: error: format not a string literal and no format arguments [-Werror=format-security] 1084 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1091:40: error: format not a string literal and no format arguments [-Werror=format-security] 1091 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1123:35: error: format not a string literal and no format arguments [-Werror=format-security] 1123 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1128:35: error: format not a string literal and no format arguments [-Werror=format-security] 1128 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1134:40: error: format not a string literal and no format arguments [-Werror=format-security] 1134 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1139:40: error: format not a string literal and no format arguments [-Werror=format-security] 1139 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:608:17: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation] 608 | strncpy(path2, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^ In function ‘process_dir’, inlined from ‘main’ at trainphd.c:1095:17: trainphd.c:608:40: note: length computed here 608 | strncpy(path2, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ trainphd.c: In function ‘main’: trainphd.c:735:17: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation] 735 | strncpy(tabFileName, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^ In function ‘process_projectfile’, inlined from ‘main’ at trainphd.c:1105:13: trainphd.c:735:46: note: length computed here 735 | strncpy(tabFileName, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ trainphd.c: In function ‘main’: trainphd.c:1041:25: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1041 | strncpy(tab_file_name, string, strlen(string)-strlen(name)); | ^ trainphd.c:1041:56: note: length computed here 1041 | strncpy(tab_file_name, string, strlen(string)-strlen(name)); | ^~~~~~~~~~~~~~ trainphd.c:896:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 896 | (void)strncpy(tab_dir_name, optarg, sizeof(tab_dir_name)); | ^ trainphd.c:856:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 856 | (void)strncpy(OutputName, optarg, sizeof(OutputName)); | ^ trainphd.c:864:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 864 | (void)strncpy(InputName, optarg, sizeof(InputName)); | ^ trainphd.c:860:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 860 | (void)strncpy(InputName, optarg, sizeof(InputName)); | ^ trainphd.c:818:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 818 | (void)strncpy(VectorName, optarg, sizeof(VectorName)); | ^ trainphd.c:822:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 822 | (void)strncpy(SiteName, optarg, sizeof(SiteName)); | ^ trainphd.c:814:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 814 | (void)strncpy(PrimerName, optarg, sizeof(PrimerName)); | ^ trainphd.c:849:19: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 849 | (void)strncpy(ConsensusName, optarg, sizeof(ConsensusName)); | ^ cc1: some warnings being treated as errors make[2]: *** [../include.mk:180: ../../obj/Linux_64/trainphd.o] Error 1 make[2]: Leaving directory '/<>/src/mktrain' make[2]: Entering directory '/<>/src/mklut' mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lut.c -o ../../obj/Linux_64/lut.o lut.c: In function ‘read_bases_and_populate_bins’: lut.c:438:26: warning: variable ‘cchar’ set but not used [-Wunused-but-set-variable] 438 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:437:25: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:437:19: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function ‘create_qv_table_via_dynamic_programming’: lut.c:894:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 894 | for (i = 1; i < (MAX_QV / 10); i++) | ^~~ lut.c:899:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 899 | fprintf(fout, "\n"); | ^~~~~~~ lut.c: In function ‘compress_params_array’: lut.c:1012:13: warning: variable ‘max_weight’ set but not used [-Wunused-but-set-variable] 1012 | int max_weight=0, *wn; | ^~~~~~~~~~ lut.c: In function ‘read_and_sort_trace_parameters’: lut.c:1112:21: warning: variable ‘cchar’ set but not used [-Wunused-but-set-variable] 1112 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:1111:20: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:1111:14: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function ‘main’: lut.c:1404:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1404 | t1 = time((time_t) NULL); | ^ lut.c:1404:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1404 | t1 = time((time_t) NULL); | ^ | | | long long int In file included from /usr/arm-linux-gnueabihf/include/features.h:490, from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from lut.c:41: /usr/arm-linux-gnueabihf/include/time.h:86:15: note: expected ‘time_t *’ {aka ‘long long int *’} but argument is of type ‘long long int’ 86 | extern time_t __REDIRECT_NTH (time, (time_t *__timer), __time64); | ^~~~~~~~~~~~~~ lut.c:1449:34: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] 1449 | sscanf(optarg, "%d", &threshold_count); | ~^ ~~~~~~~~~~~~~~~~ | | | | | unsigned int * | int * | %d lut.c:1520:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1520 | t2 = time((time_t) NULL); | ^ lut.c:1520:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1520 | t2 = time((time_t) NULL); | ^ | | | long long int /usr/arm-linux-gnueabihf/include/time.h:86:15: note: expected ‘time_t *’ {aka ‘long long int *’} but argument is of type ‘long long int’ 86 | extern time_t __REDIRECT_NTH (time, (time_t *__timer), __time64); | ^~~~~~~~~~~~~~ lut.c:1573:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1573 | t2 = time((time_t) NULL); | ^ lut.c:1573:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1573 | t2 = time((time_t) NULL); | ^ | | | long long int /usr/arm-linux-gnueabihf/include/time.h:86:15: note: expected ‘time_t *’ {aka ‘long long int *’} but argument is of type ‘long long int’ 86 | extern time_t __REDIRECT_NTH (time, (time_t *__timer), __time64); | ^~~~~~~~~~~~~~ lut.c:1604:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1604 | t2 = time((time_t) NULL); | ^ lut.c:1604:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1604 | t2 = time((time_t) NULL); | ^ | | | long long int /usr/arm-linux-gnueabihf/include/time.h:86:15: note: expected ‘time_t *’ {aka ‘long long int *’} but argument is of type ‘long long int’ 86 | extern time_t __REDIRECT_NTH (time, (time_t *__timer), __time64); | ^~~~~~~~~~~~~~ lut.c:1645:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1645 | t2 = time((time_t) NULL); | ^ lut.c:1645:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1645 | t2 = time((time_t) NULL); | ^ | | | long long int /usr/arm-linux-gnueabihf/include/time.h:86:15: note: expected ‘time_t *’ {aka ‘long long int *’} but argument is of type ‘long long int’ 86 | extern time_t __REDIRECT_NTH (time, (time_t *__timer), __time64); | ^~~~~~~~~~~~~~ lut.c:1459:23: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 1459 | (void)strncpy(OutputName, optarg, sizeof(OutputName)); | ^ mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c select.c -o ../../obj/Linux_64/select.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c func_name.c -o ../../obj/Linux_64/func_name.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c get_thresholds.c -o ../../obj/Linux_64/get_thresholds.o mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mkchk/check_data.c -o ../../obj/Linux_64/check_data.o ../mkchk/check_data.c: In function ‘get_bases’: ../mkchk/check_data.c:47:25: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ ../mkchk/check_data.c:47:19: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ arm-linux-gnueabihf-g++ ../../obj/Linux_64/lut.o ../../obj/Linux_64/select.o ../../obj/Linux_64/func_name.o ../../obj/Linux_64/get_thresholds.o ../../obj/Linux_64/check_data.o -o ../../rel/Linux_64/lut -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/<>/src/mklut' make[2]: Entering directory '/<>/src/mkchk' mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbc.c -o ../../obj/Linux_64/checkbc.o arm-linux-gnueabihf-g++ ../../obj/Linux_64/checkbc.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbc -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqv.c -o ../../obj/Linux_64/checkqv.o checkqv.c: In function ‘crossValidate’: checkqv.c:84:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 84 | if (base[i].schar != '-') | ^~ checkqv.c:87:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 87 | qv = get_quality_value(base[i].parameter[0], | ^~ arm-linux-gnueabihf-g++ ../../obj/Linux_64/checkqv.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqv -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbcphd.c -o ../../obj/Linux_64/checkbcphd.o checkbcphd.c: In function ‘errorStatswithQVs’: checkbcphd.c:197:18: warning: unknown escape sequence: '\%' 197 | char c = '\%'; | ^~~~ checkbcphd.c:50:51: warning: variable ‘qvo’ set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ checkbcphd.c:50:32: warning: variable ‘qvp’ set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ arm-linux-gnueabihf-g++ ../../obj/Linux_64/checkbcphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbcphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 arm-linux-gnueabihf-gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqvphd.c -o ../../obj/Linux_64/checkqvphd.o arm-linux-gnueabihf-g++ ../../obj/Linux_64/checkqvphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqvphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/<>/src/mkchk' make[1]: Leaving directory '/<>/src' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src rm -f -- debian/tracetuner.substvars rm -fr -- debian/.debhelper/generated/tracetuner/ debian/tracetuner/ debian/tmp/ dh_installdirs -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -m0755 -d /<>/tracetuner-3.0.6\~beta\+dfsg/debian/tracetuner find rel -mindepth 2 -type f | xargs -r mv --target-directory=/<>/debian/tracetuner/usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/usr/share/doc/tracetuner install -m0755 -d debian/tracetuner/usr/share/doc/tracetuner cp --reflink=auto -a ./src/README debian/tracetuner/usr/share/doc/tracetuner cp --reflink=auto -a ./doc/RELEASE_NOTES debian/tracetuner/usr/share/doc/tracetuner chmod -R u\+rw,go=rX debian/tracetuner/usr/share/doc install -p -m0644 debian/README.Debian debian/tracetuner/usr/share/doc/tracetuner/README.Debian install -p -m0644 debian/copyright debian/tracetuner/usr/share/doc/tracetuner/copyright dh_installchangelogs -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/usr/share/doc/tracetuner install -p -m0644 debian/.debhelper/generated/tracetuner/dh_installchangelogs.dch.trimmed debian/tracetuner/usr/share/doc/tracetuner/changelog.Debian dh_installman -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/train.1 debian/tracetuner/usr/share/man/man1/train.1 install -m0755 -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/trainphd.1 debian/tracetuner/usr/share/man/man1/trainphd.1 install -m0755 -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/ttuner.1 debian/tracetuner/usr/share/man/man1/ttuner.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/train.1 debian/tracetuner/usr/share/man/man1/trainphd.1 debian/tracetuner/usr/share/man/man1/ttuner.1 mv debian/tracetuner/usr/share/man/man1/train.1.dh-new debian/tracetuner/usr/share/man/man1/train.1 mv debian/tracetuner/usr/share/man/man1/trainphd.1.dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 mv debian/tracetuner/usr/share/man/man1/ttuner.1.dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/train.1 debian/tracetuner/usr/share/man/man1/trainphd.1 debian/tracetuner/usr/share/man/man1/ttuner.1 dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src cd debian/tracetuner chmod a-x usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 gzip -9nf usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 cd '/<>' dh_fixperms -a -O--sourcedirectory=src find debian/tracetuner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tracetuner/usr/share/doc -type f -a -true -a ! -regex 'debian/tracetuner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tracetuner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/tracetuner/usr/lib/debug/.dwz/arm-linux-gnueabihf/tracetuner.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/tracetuner.debug -- debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/ttuner arm-linux-gnueabihf-objcopy --compress-debug-sections debian/tracetuner/usr/lib/debug/.dwz/arm-linux-gnueabihf/tracetuner.debug chmod 0644 -- debian/tracetuner/usr/lib/debug/.dwz/arm-linux-gnueabihf/tracetuner.debug dh_strip -a -O--sourcedirectory=src install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4a arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/train debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4a/6eb0374aa401b6ad27bd183a91beb7117d0556.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4a/6eb0374aa401b6ad27bd183a91beb7117d0556.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/train arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4a/6eb0374aa401b6ad27bd183a91beb7117d0556.debug debian/tracetuner/usr/bin/train install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c2 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/ttuner debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c2/aedb756d667bee5faab7419d1e49e9f5d8b2ba.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c2/aedb756d667bee5faab7419d1e49e9f5d8b2ba.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/ttuner arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c2/aedb756d667bee5faab7419d1e49e9f5d8b2ba.debug debian/tracetuner/usr/bin/ttuner install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8a arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqv debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8a/c106d347825b4aecb119575806c41a95c47924.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8a/c106d347825b4aecb119575806c41a95c47924.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqv arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8a/c106d347825b4aecb119575806c41a95c47924.debug debian/tracetuner/usr/bin/checkqv install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/67 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/lut debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/67/4dbfc19c3f6b8e197f7d09b5861763770b8a80.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/67/4dbfc19c3f6b8e197f7d09b5861763770b8a80.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/lut arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/67/4dbfc19c3f6b8e197f7d09b5861763770b8a80.debug debian/tracetuner/usr/bin/lut install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/37 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqvphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/37/a007f38db07d3715eeac2688fe2a373fcb245d.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/37/a007f38db07d3715eeac2688fe2a373fcb245d.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqvphd arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/37/a007f38db07d3715eeac2688fe2a373fcb245d.debug debian/tracetuner/usr/bin/checkqvphd install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbcphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/0cb9b56c476fcd430cb90b66af89694b005b49.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/0cb9b56c476fcd430cb90b66af89694b005b49.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbcphd arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/0cb9b56c476fcd430cb90b66af89694b005b49.debug debian/tracetuner/usr/bin/checkbcphd install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d6 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbc debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d6/37313a27990d9e9a332f10be11f1a65e9dc9af.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d6/37313a27990d9e9a332f10be11f1a65e9dc9af.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbc arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d6/37313a27990d9e9a332f10be11f1a65e9dc9af.debug debian/tracetuner/usr/bin/checkbc install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tracetuner/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tracetuner/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tracetuner/usr/lib/debug install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc ln -s tracetuner debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc/tracetuner-dbgsym install -m0755 -d debian/.debhelper/tracetuner dh_makeshlibs -a -O--sourcedirectory=src rm -f debian/tracetuner/DEBIAN/shlibs dh_shlibdeps -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/DEBIAN dpkg-shlibdeps -Tdebian/tracetuner.substvars debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/ttuner debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkbc dh_installdeb -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/DEBIAN dh_gencontrol -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/DEBIAN echo misc:Depends= >> debian/tracetuner.substvars echo misc:Pre-Depends= >> debian/tracetuner.substvars install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/DEBIAN dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -cdebian/control -Pdebian/.debhelper/tracetuner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tracetuner-dbgsym "-DDepends=tracetuner (= \${binary:Version})" "-DDescription=debug symbols for tracetuner" "-DBuild-Ids=37a007f38db07d3715eeac2688fe2a373fcb245d 4a6eb0374aa401b6ad27bd183a91beb7117d0556 674dbfc19c3f6b8e197f7d09b5861763770b8a80 8ac106d347825b4aecb119575806c41a95c47924 ad0cb9b56c476fcd430cb90b66af89694b005b49 c2aedb756d667bee5faab7419d1e49e9f5d8b2ba d637313a27990d9e9a332f10be11f1a65e9dc9af" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -cdebian/control -Pdebian/tracetuner chmod 0644 -- debian/tracetuner/DEBIAN/control dh_md5sums -a -O--sourcedirectory=src install -m0755 -d debian/tracetuner/DEBIAN cd debian/tracetuner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tracetuner/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tracetuner/dbgsym-root/DEBIAN cd debian/.debhelper/tracetuner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--sourcedirectory=src dpkg-deb --root-owner-group --build debian/tracetuner .. dpkg-deb: building package 'tracetuner' in '../tracetuner_3.0.6~beta+dfsg-3_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tracetuner/dbgsym-root .. dpkg-deb: building package 'tracetuner-dbgsym' in '../tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=any -O../tracetuner_3.0.6~beta+dfsg-3_armhf.buildinfo dpkg-genchanges --build=any -O../tracetuner_3.0.6~beta+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-03T01:30:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tracetuner_3.0.6~beta+dfsg-3_armhf.changes: ------------------------------------------- Format: 1.8 Date: Fri, 04 Dec 2020 23:43:55 +0100 Source: tracetuner Binary: tracetuner tracetuner-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 3.0.6~beta+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tracetuner - interpretation of DNA Sanger sequencing data Changes: tracetuner (3.0.6~beta+dfsg-3) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/control (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 6f9578f1b0c872d28994052d01ee3d71114212fa 1101448 tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb 815aff52aece16ce9c0676a4a40b77865396d791 5267 tracetuner_3.0.6~beta+dfsg-3_armhf.buildinfo 3e06c7c012e244bd7b578f9c71d6e3aacf7f72dd 304892 tracetuner_3.0.6~beta+dfsg-3_armhf.deb Checksums-Sha256: 1349680a623a313eb5506d2c83d14593b0e5b01033295f70c4b86bd6596554ff 1101448 tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb 2c57167b58e85d37d093b2df2e3b4ef016551cfa8a411e63011b9609a31c2367 5267 tracetuner_3.0.6~beta+dfsg-3_armhf.buildinfo eccf11d7540d69807b7895c52aaed5cacc8fc092d8947c3814cd547ab21a0fab 304892 tracetuner_3.0.6~beta+dfsg-3_armhf.deb Files: 6289f951e6bd32183edfc3b664c8c3d9 1101448 debug optional tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb 01de3a0440752dd2812e81204db949f4 5267 science optional tracetuner_3.0.6~beta+dfsg-3_armhf.buildinfo 296ee758768e8bd5c7be6b89058a8111 304892 science optional tracetuner_3.0.6~beta+dfsg-3_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tracetuner Binary: tracetuner tracetuner-dbgsym Architecture: armhf Version: 3.0.6~beta+dfsg-3 Checksums-Md5: 6289f951e6bd32183edfc3b664c8c3d9 1101448 tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb 296ee758768e8bd5c7be6b89058a8111 304892 tracetuner_3.0.6~beta+dfsg-3_armhf.deb Checksums-Sha1: 6f9578f1b0c872d28994052d01ee3d71114212fa 1101448 tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb 3e06c7c012e244bd7b578f9c71d6e3aacf7f72dd 304892 tracetuner_3.0.6~beta+dfsg-3_armhf.deb Checksums-Sha256: 1349680a623a313eb5506d2c83d14593b0e5b01033295f70c4b86bd6596554ff 1101448 tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb eccf11d7540d69807b7895c52aaed5cacc8fc092d8947c3814cd547ab21a0fab 304892 tracetuner_3.0.6~beta+dfsg-3_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 03 Apr 2024 01:30:37 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.39.3-11), bsdutils (= 1:2.39.3-11), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.39.3-11), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libhwasan0 (= 14-20240330-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-11), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14-20240330-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsframe1 (= 2.42-4), libsmartcols1 (= 2.39.3-11), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.39.3-11), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-4), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.39.3-11), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1607121835" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tracetuner-dbgsym_3.0.6~beta+dfsg-3_armhf.deb --------------------------------------------- new Debian package, version 2.0. size 1101448 bytes: control archive=920 bytes. 649 bytes, 12 lines control 832 bytes, 8 lines md5sums Package: tracetuner-dbgsym Source: tracetuner Version: 3.0.6~beta+dfsg-3 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1194 Depends: tracetuner (= 3.0.6~beta+dfsg-3) Section: debug Priority: optional Description: debug symbols for tracetuner Build-Ids: 37a007f38db07d3715eeac2688fe2a373fcb245d 4a6eb0374aa401b6ad27bd183a91beb7117d0556 674dbfc19c3f6b8e197f7d09b5861763770b8a80 8ac106d347825b4aecb119575806c41a95c47924 ad0cb9b56c476fcd430cb90b66af89694b005b49 c2aedb756d667bee5faab7419d1e49e9f5d8b2ba d637313a27990d9e9a332f10be11f1a65e9dc9af drwxr-xr-x root/root 0 2020-12-04 22:43 ./ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/37/ -rw-r--r-- root/root 15232 2020-12-04 22:43 ./usr/lib/debug/.build-id/37/a007f38db07d3715eeac2688fe2a373fcb245d.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/4a/ -rw-r--r-- root/root 372028 2020-12-04 22:43 ./usr/lib/debug/.build-id/4a/6eb0374aa401b6ad27bd183a91beb7117d0556.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/67/ -rw-r--r-- root/root 39404 2020-12-04 22:43 ./usr/lib/debug/.build-id/67/4dbfc19c3f6b8e197f7d09b5861763770b8a80.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 347052 2020-12-04 22:43 ./usr/lib/debug/.build-id/8a/c106d347825b4aecb119575806c41a95c47924.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 17312 2020-12-04 22:43 ./usr/lib/debug/.build-id/ad/0cb9b56c476fcd430cb90b66af89694b005b49.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 362216 2020-12-04 22:43 ./usr/lib/debug/.build-id/c2/aedb756d667bee5faab7419d1e49e9f5d8b2ba.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.build-id/d6/ -rw-r--r-- root/root 14752 2020-12-04 22:43 ./usr/lib/debug/.build-id/d6/37313a27990d9e9a332f10be11f1a65e9dc9af.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 32964 2020-12-04 22:43 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tracetuner.debug drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-04 22:43 ./usr/share/doc/tracetuner-dbgsym -> tracetuner tracetuner_3.0.6~beta+dfsg-3_armhf.deb -------------------------------------- new Debian package, version 2.0. size 304892 bytes: control archive=1992 bytes. 2496 bytes, 50 lines control 911 bytes, 15 lines md5sums Package: tracetuner Version: 3.0.6~beta+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1283 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5) Section: science Priority: optional Homepage: https://sourceforge.net/projects/tracetuner/ Description: interpretation of DNA Sanger sequencing data Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Traditional DNA sequencing yields curves from four different channels or light frequencies that human or (preferably) machines are interpreting to determine the actual base (A,C,G or T) and the confidence with which this is determined. . TraceTuner is a DNA sequencing quality value, base calling and trace processing software application originally developed by Paracel, Inc. While providing a flexible interface and capability to adopt the "pure" base calls produced by Phred, KB or any other "original" caller, it offers competitive features not currently available in other tools, such as customized calibration of quality values, advanced heterozygote and mixed base calling and deconvolving the "mixed" electropherograms resulting from the presence of indels into a couple of "pure" electropherograms. . Later versions Previous versions of TraceTuner were used by Celera Genomics to process over 27 million reads from both Drosophila and human genome projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. its SNP detection and genotyping software product SeqScape. . TraceTuner implements an advanced peak processing technology for resolving overlapping peaks of the same dye color into individual, or "intrinsic" peaks. TraceTuner, for its support of mixed base calling, have been used by the research community, the private biotech sector, and the U.S. government as components of different variant detection, genotyping and forensic software applications (e.g. Applied Biosystems SeqScape, Paracel Genome Assembler, MTexpert, etc.). . This technology was protected by US Patent #6,681,186. Currently, TraceTuner is an open source software, which has been used by J. Craig Venter Institute's DNA Sequencing and Resequencing pipelines. . This package prepares an important piece of human history to be used with new data on new machines or to revisit older observations.. drwxr-xr-x root/root 0 2020-12-04 22:43 ./ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/bin/ -rwxr-xr-x root/root 9776 2020-12-04 22:43 ./usr/bin/checkbc -rwxr-xr-x root/root 13868 2020-12-04 22:43 ./usr/bin/checkbcphd -rwxr-xr-x root/root 396044 2020-12-04 22:43 ./usr/bin/checkqv -rwxr-xr-x root/root 9772 2020-12-04 22:43 ./usr/bin/checkqvphd -rwxr-xr-x root/root 22060 2020-12-04 22:43 ./usr/bin/lut -rwxr-xr-x root/root 416520 2020-12-04 22:43 ./usr/bin/train -rwxr-xr-x root/root 420624 2020-12-04 22:43 ./usr/bin/ttuner drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/doc/tracetuner/ -rw-r--r-- root/root 497 2020-12-04 22:43 ./usr/share/doc/tracetuner/README.Debian -rw-r--r-- root/root 1671 2008-11-28 23:00 ./usr/share/doc/tracetuner/README.gz -rw-r--r-- root/root 1625 2009-06-30 13:16 ./usr/share/doc/tracetuner/RELEASE_NOTES.gz -rw-r--r-- root/root 413 2020-12-04 22:43 ./usr/share/doc/tracetuner/changelog.Debian.gz -rw-r--r-- root/root 1157 2020-12-04 22:43 ./usr/share/doc/tracetuner/copyright drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-04 22:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1059 2020-12-04 22:43 ./usr/share/man/man1/train.1.gz -rw-r--r-- root/root 961 2020-12-04 22:43 ./usr/share/man/man1/trainphd.1.gz -rw-r--r-- root/root 1341 2020-12-04 22:43 ./usr/share/man/man1/ttuner.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1308 B] Get:5 copy:/<>/apt_archive ./ Packages [1387 B] Fetched 3310 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 13.6 MB of archives. After this operation, 51.6 MB of additional disk space will be used. 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Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 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libhttp-date-perl all 6.06-1 [10.7 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:67 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:68 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:75 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:76 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:77 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:78 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:82 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:83 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:84 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:107 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:116 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:120 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:126 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:128 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:129 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.6 MB in 0s (77.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 17764 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_amd64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... 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Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... 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Preparing to unpack .../030-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../031-libclass-xsaccessor-perl_1.19-4+b3_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b3) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../032-libclone-perl_0.46-1+b2_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../033-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../034-libparams-util-perl_1.102-3_amd64.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../035-libsub-install-perl_0.929-1_all.deb ... 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Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../052-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../053-libdevel-size-perl_0.83-2+b3_amd64.deb ... Unpacking libdevel-size-perl (0.83-2+b3) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../054-libemail-address-xs-perl_1.05-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b3) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../055-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../056-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... 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Preparing to unpack .../128-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.14-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1+b2) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.5-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 10360 Build-Time: 17 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 11 Job: tracetuner_3.0.6~beta+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: tracetuner Package-Time: 37 Source-Version: 3.0.6~beta+dfsg-3 Space: 10360 Status: successful Version: 3.0.6~beta+dfsg-3 -------------------------------------------------------------------------------- Finished at 2024-04-03T01:30:37Z Build needed 00:00:37, 10360k disk space