sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | tvc 5.0.3+git20151221.80e144e+dfsg-5 (amd64) Fri, 09 Sep 2022 10:34:42 +0000 | +==============================================================================+ Package: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Source Version: 5.0.3+git20151221.80e144e+dfsg-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-b2059b10-2e33-4aaa-a0ee-6ddaede11675' with '<>' I: NOTICE: Log filtering will replace 'build/tvc-0m2cNI/resolver-xfU7jB' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [192 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [9355 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9903 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9183 kB] Fetched 28.6 MB in 8s (3498 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tvc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tvc.git Please use: git clone https://salsa.debian.org/med-team/tvc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 757 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (dsc) [2227 B] Get:2 http://mirror.einval.org/debian sid/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (tar) [745 kB] Get:3 http://mirror.einval.org/debian sid/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (diff) [9800 B] Fetched 757 kB in 0s (9010 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tvc-0m2cNI/tvc-5.0.3+git20151221.80e144e+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/tvc-0m2cNI' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [442 B] Get:5 copy:/<>/apt_archive ./ Packages [534 B] Fetched 1933 B in 0s (46.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base hdf5-helpers:amd64 intltool-debian libaec-dev:amd64 libaec0:amd64 libarchive-zip-perl libarchive13 libarmadillo-dev:amd64 libarmadillo11:amd64 libarpack2:amd64 libarpack2-dev:amd64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbamtools-dev:amd64 libbamtools2.5.2:amd64 libblas-dev:amd64 libblas3:amd64 libboost-math-dev:amd64 libboost-math1.74-dev:amd64 libboost-math1.74.0:amd64 libboost1.74-dev:amd64 libbrotli1 libbrotli1:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4 libcurl4:amd64 libcurl4-openssl-dev:amd64 libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:amd64 libdisorder0:amd64 libelf1 libexpat1 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhdf5-103-1:amd64 libhdf5-cpp-103-1:amd64 libhdf5-dev:amd64 libhdf5-fortran-102:amd64 libhdf5-hl-100:amd64 libhdf5-hl-cpp-100:amd64 libhdf5-hl-fortran-100:amd64 libhogweed6:amd64 libicu71 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64 libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp-dev:amd64 libjsoncpp25 libjsoncpp25:amd64 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblapack-dev:amd64 liblapack3:amd64 libldap-2.5-0 libldap-2.5-0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14 libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64 libpipeline1 libprocps8 libpsl5 libpsl5:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libssh2-1 libssh2-1:amd64 libssl-dev:amd64 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsuperlu-dev:amd64 libsuperlu5:amd64 libsz2:amd64 libtasn1-6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-x86-64-linux-gnu gcc-12-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libitpp-dev:amd64 libbamtools-doc:amd64 liblapack-doc:amd64 libboost1.74-doc:amd64 libboost-atomic1.74-dev:amd64 libboost-chrono1.74-dev:amd64 libboost-container1.74-dev:amd64 libboost-context1.74-dev:amd64 libboost-contract1.74-dev:amd64 libboost-coroutine1.74-dev:amd64 libboost-date-time1.74-dev:amd64 libboost-exception1.74-dev:amd64 libboost-fiber1.74-dev:amd64 libboost-filesystem1.74-dev:amd64 libboost-graph1.74-dev:amd64 libboost-graph-parallel1.74-dev:amd64 libboost-iostreams1.74-dev:amd64 libboost-locale1.74-dev:amd64 libboost-log1.74-dev:amd64 libboost-mpi1.74-dev:amd64 libboost-mpi-python1.74-dev:amd64 libboost-numpy1.74-dev:amd64 libboost-program-options1.74-dev:amd64 libboost-python1.74-dev:amd64 libboost-random1.74-dev:amd64 libboost-regex1.74-dev:amd64 libboost-serialization1.74-dev:amd64 libboost-stacktrace1.74-dev:amd64 libboost-system1.74-dev:amd64 libboost-test1.74-dev:amd64 libboost-thread1.74-dev:amd64 libboost-timer1.74-dev:amd64 libboost-type-erasure1.74-dev:amd64 libboost-wave1.74-dev:amd64 libboost1.74-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 libboost-nowide1.74-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libcurl4-doc:amd64 libidn11-dev:amd64 libkrb5-dev:amd64 libldap2-dev:amd64 librtmp-dev:amd64 libssh2-1-dev:amd64 pkg-config:amd64 gnutls-bin:amd64 krb5-doc:amd64 krb5-user:amd64 libhdf5-doc:amd64 libssl-doc:amd64 libstdc++-12-doc:amd64 libsuperlu-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates ca-certificates:amd64 libarchive-cpio-perl krb5-locales:amd64 libldap-common libldap-common:amd64 libgpm2 publicsuffix publicsuffix:amd64 libsasl2-modules libsasl2-modules:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base hdf5-helpers:amd64 intltool-debian libaec-dev:amd64 libaec0:amd64 libarchive-zip-perl libarchive13 libarmadillo-dev:amd64 libarmadillo11:amd64 libarpack2:amd64 libarpack2-dev:amd64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbamtools-dev:amd64 libbamtools2.5.2:amd64 libblas-dev:amd64 libblas3:amd64 libboost-math-dev:amd64 libboost-math1.74-dev:amd64 libboost-math1.74.0:amd64 libboost1.74-dev:amd64 libbrotli1 libbrotli1:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4 libcurl4:amd64 libcurl4-openssl-dev:amd64 libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:amd64 libdisorder0:amd64 libelf1 libexpat1 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhdf5-103-1:amd64 libhdf5-cpp-103-1:amd64 libhdf5-dev:amd64 libhdf5-fortran-102:amd64 libhdf5-hl-100:amd64 libhdf5-hl-cpp-100:amd64 libhdf5-hl-fortran-100:amd64 libhogweed6:amd64 libicu71 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64 libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp-dev:amd64 libjsoncpp25 libjsoncpp25:amd64 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblapack-dev:amd64 liblapack3:amd64 libldap-2.5-0 libldap-2.5-0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14 libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64 libpipeline1 libprocps8 libpsl5 libpsl5:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libssh2-1 libssh2-1:amd64 libssl-dev:amd64 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsuperlu-dev:amd64 libsuperlu5:amd64 libsz2:amd64 libtasn1-6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 184 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After this operation, 698 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libncurses6 arm64 6.3+20220423-2 [92.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.3+20220423-2 [121 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libprocps8 arm64 2:3.3.17-7+b1 [62.5 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 procps arm64 2:3.3.17-7+b1 [497 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-9 [173 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38.1-1 [145 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-2 [37.3 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-3 [1394 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.19-1 [280 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-9 [510 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1+b1 [640 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.6.0-1 [327 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b4 [270 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-8 [39.2 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg-8 [76.5 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.12+dfsg-2+b1 [214 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libnghttp2-14 arm64 1.49.0-1 [76.5 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.85.0-1 [341 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.8-1 [94.6 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 dh-elpa-helper all 2.0.11 [11.4 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 emacsen-common all 3.0.4 [19.3 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.24.1-1 [2018 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.24.1-1 [5728 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.2.0-1cross1 [208 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 cpp-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [8764 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:12.2.0-1 [17.1 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.38.90.20220713-2 [5493 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 gcc-12-cross-base all 12.2.0-1cross1 [203 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 12.2.0-1cross1 [50.2 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 12.2.0-1cross1 [113 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 12.2.0-1cross1 [25.6 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 12.2.0-1cross1 [9076 B] Get:53 http://mirror.einval.org/debian sid/main arm64 libasan8-amd64-cross all 12.2.0-1cross1 [2193 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 12.2.0-1cross1 [968 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libtsan2-amd64-cross all 12.2.0-1cross1 [2197 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.34-3cross1 [1505 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12.2.0-1cross1 [570 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12.2.0-1cross1 [882 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12.2.0-1cross1 [144 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libgcc-12-dev-amd64-cross all 12.2.0-1cross1 [2438 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [17.4 MB] Get:62 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:12.2.0-1 [1452 B] Get:63 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.18.16-1cross1 [1740 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.34-3cross1 [1891 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libstdc++-12-dev-amd64-cross all 12.2.0-1cross1 [2027 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 g++-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [9596 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:12.2.0-1 [1176 B] Get:68 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:82 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.9.1 [196 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-3 [10.4 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-2 [178 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-9 [1262 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.9.1 [1071 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-1 [208 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 hdf5-helpers amd64 1.10.8+repack-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-1 [50.3 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.34-7 [2766 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libaec0 amd64 1.0.6-1 [20.3 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libsz2 amd64 1.0.6-1 [7492 B] Get:101 http://mirror.einval.org/debian sid/main amd64 libaec-dev amd64 1.0.6-1 [18.9 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-1 [145 kB] Get:104 http://mirror.einval.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-1 [793 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libarpack2 amd64 3.8.0-1 [103 kB] Get:107 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-1 [613 kB] Get:108 http://mirror.einval.org/debian sid/main amd64 libsuperlu5 amd64 5.3.0+dfsg1-2 [163 kB] Get:109 http://mirror.einval.org/debian sid/main amd64 libarmadillo11 amd64 1:11.2.3+dfsg-1 [103 kB] Get:110 http://mirror.einval.org/debian sid/main amd64 libblas-dev amd64 3.10.1-2 [164 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 liblapack-dev amd64 3.10.1-2 [4317 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 libarpack2-dev amd64 3.8.0-1 [117 kB] Get:113 http://mirror.einval.org/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:116 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:117 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:118 http://mirror.einval.org/debian sid/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:119 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:120 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:121 http://mirror.einval.org/debian sid/main amd64 libunistring2 amd64 1.0-1 [416 kB] Get:122 http://mirror.einval.org/debian sid/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB] Get:123 http://mirror.einval.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1 [561 kB] Get:124 http://mirror.einval.org/debian sid/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:125 http://mirror.einval.org/debian sid/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:126 http://mirror.einval.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:127 http://mirror.einval.org/debian sid/main amd64 libp11-kit0 amd64 0.24.1-1 [352 kB] Get:128 http://mirror.einval.org/debian sid/main amd64 libtasn1-6 amd64 4.18.0-4 [55.9 kB] Get:129 http://mirror.einval.org/debian sid/main amd64 libgnutls30 amd64 3.7.7-2 [1415 kB] Get:130 http://mirror.einval.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.10 [687 kB] Get:131 http://mirror.einval.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-8 [38.7 kB] Get:132 http://mirror.einval.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-8 [78.2 kB] Get:133 http://mirror.einval.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2+b1 [226 kB] Get:134 http://mirror.einval.org/debian sid/main amd64 libnghttp2-14 amd64 1.49.0-1 [81.3 kB] Get:135 http://mirror.einval.org/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:136 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1 [92.7 kB] Get:137 http://mirror.einval.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:138 http://mirror.einval.org/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:139 http://mirror.einval.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [275 kB] Get:140 http://mirror.einval.org/debian sid/main amd64 libcurl4 amd64 7.85.0-1 [367 kB] Get:141 http://mirror.einval.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.8+repack-1 [1254 kB] Get:142 http://mirror.einval.org/debian sid/main amd64 libhdf5-fortran-102 amd64 1.10.8+repack-1 [110 kB] Get:143 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.8+repack-1 [84.8 kB] Get:144 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-fortran-100 amd64 1.10.8+repack-1 [61.8 kB] Get:145 http://mirror.einval.org/debian sid/main amd64 libhdf5-cpp-103-1 amd64 1.10.8+repack-1 [144 kB] Get:146 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-cpp-100 amd64 1.10.8+repack-1 [42.6 kB] Get:147 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.19.6-1 [1627 kB] Get:148 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-2 [89.3 kB] Get:149 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-2 [118 kB] Get:150 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:151 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:152 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:153 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:154 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.34-7 [1897 kB] Get:155 http://mirror.einval.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4.1 [193 kB] Get:156 http://mirror.einval.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:157 http://mirror.einval.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.2-1 [288 kB] Get:158 http://mirror.einval.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.2-1 [74.7 kB] Get:159 http://mirror.einval.org/debian sid/main amd64 libcurl4-openssl-dev amd64 7.85.0-1 [463 kB] Get:160 http://mirror.einval.org/debian sid/main amd64 libssl-dev amd64 3.0.5-2 [2443 kB] Get:161 http://mirror.einval.org/debian sid/main amd64 libhdf5-dev amd64 1.10.8+repack-1 [2630 kB] Get:162 http://mirror.einval.org/debian sid/main amd64 libsuperlu-dev amd64 5.3.0+dfsg1-2 [22.1 kB] Get:163 http://mirror.einval.org/debian sid/main amd64 libarmadillo-dev amd64 1:11.2.3+dfsg-1 [404 kB] Get:164 http://mirror.einval.org/debian sid/main amd64 libasan8 amd64 12.2.0-1 [2193 kB] Get:165 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12.2.0-1 [9324 B] Get:166 http://mirror.einval.org/debian sid/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-2 [150 kB] Get:167 http://mirror.einval.org/debian sid/main amd64 libbamtools-dev amd64 2.5.2+dfsg-2 [215 kB] Get:168 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12.2.0-1 [116 kB] Get:169 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12.2.0-1 [26.1 kB] Get:170 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12.2.0-1 [969 kB] Get:171 http://mirror.einval.org/debian sid/main amd64 libtsan2 amd64 12.2.0-1 [2197 kB] Get:172 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12.2.0-1 [883 kB] Get:173 http://mirror.einval.org/debian sid/main amd64 libgcc-12-dev amd64 12.2.0-1 [2437 kB] Get:174 http://mirror.einval.org/debian sid/main amd64 libstdc++-12-dev amd64 12.2.0-1 [2045 kB] Get:175 http://mirror.einval.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-17 [9533 kB] Get:176 http://mirror.einval.org/debian sid/main amd64 libboost-math1.74.0 amd64 1.74.0-17 [515 kB] Get:177 http://mirror.einval.org/debian sid/main amd64 libboost-math1.74-dev amd64 1.74.0-17 [588 kB] Get:178 http://mirror.einval.org/debian sid/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get:179 http://mirror.einval.org/debian sid/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4 [4568 B] Get:180 http://mirror.einval.org/debian sid/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4 [4552 B] Get:181 http://mirror.einval.org/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:182 http://mirror.einval.org/debian sid/main amd64 libjsoncpp-dev amd64 1.9.5-4 [26.4 kB] Get:183 http://mirror.einval.org/debian sid/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12 [35.5 kB] Get:184 http://mirror.einval.org/debian sid/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-12 [39.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 144 MB in 3s (52.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.3+20220423-2_arm64.deb ... Unpacking libncurses6:arm64 (6.3+20220423-2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../002-libncursesw6_6.3+20220423-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.3+20220423-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-7+b1_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-7+b1) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-7+b1_arm64.deb ... Unpacking procps (2:3.3.17-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.41-4_arm64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../007-libmagic1_1%3a5.41-4_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.41-4_arm64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-9_arm64.deb ... Unpacking gettext-base (0.21-9) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-8_arm64.deb ... Unpacking groff-base (1.22.4-8) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.38.1-1_arm64.deb ... Unpacking bsdextrautils (2.38.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../013-libpipeline1_1.5.6-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.6-2) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.10.2-3_arm64.deb ... Unpacking man-db (2.10.2-3) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-1_arm64.deb ... Unpacking m4 (1.4.19-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-9_all.deb ... Unpacking autopoint (0.21-9) ... Selecting previously unselected package libicu71:arm64. Preparing to unpack .../021-libicu71_71.1-3_arm64.deb ... Unpacking libicu71:arm64 (71.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../022-libxml2_2.9.14+dfsg-1+b1_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1+b1) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../023-libarchive13_3.6.0-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.0-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../024-libbrotli1_1.0.9-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../025-libsasl2-modules-db_2.1.28+dfsg-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../026-libsasl2-2_2.1.28+dfsg-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../027-libldap-2.5-0_2.5.12+dfsg-2+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.12+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../028-libnghttp2-14_1.49.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.49.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../029-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../030-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../031-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../032-libcurl4_7.85.0-1_arm64.deb ... Unpacking libcurl4:arm64 (7.85.0-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../033-libexpat1_2.4.8-1_arm64.deb ... Unpacking libexpat1:arm64 (2.4.8-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../034-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../035-librhash0_1.4.3-3_arm64.deb ... 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Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libuv1:arm64 (1.44.2-1) ... Setting up libatomic1-amd64-cross (12.2.0-1cross1) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.11) ... Setting up libncurses6:arm64 (6.3+20220423-2) ... Setting up libquadmath0-amd64-cross (12.2.0-1cross1) ... Setting up autopoint (0.21-9) ... Setting up libjsoncpp25:arm64 (1.9.5-4) ... Setting up libc6-amd64-cross (2.34-3cross1) ... Setting up libncursesw6:arm64 (6.3+20220423-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-8) ... Setting up autoconf (2.71-2) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:arm64 (1.4.3-3) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up cmake-data (3.24.1-1) ... Setting up libgcc-s1-amd64-cross (12.2.0-1cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.187-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libprocps8:arm64 (2:3.3.17-7+b1) ... Setting up gcc-12-x86-64-linux-gnu-base:arm64 (12.2.0-1cross1) ... Setting up binutils-x86-64-linux-gnu (2.38.90.20220713-2) ... Setting up cpp-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up libstdc++6-amd64-cross (12.2.0-1cross1) ... Setting up cpp-x86-64-linux-gnu (4:12.2.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-9) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:arm64 (3.6.0-1) ... Setting up libasan8-amd64-cross (12.2.0-1cross1) ... Setting up liblsan0-amd64-cross (12.2.0-1cross1) ... Setting up libc6-dev-amd64-cross (2.34-3cross1) ... Setting up libtsan2-amd64-cross (12.2.0-1cross1) ... Setting up libldap-2.5-0:arm64 (2.5.12+dfsg-2+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libubsan1-amd64-cross (12.2.0-1cross1) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-7+b1) ... Setting up libcurl4:arm64 (7.85.0-1) ... Setting up libgcc-12-dev-amd64-cross (12.2.0-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libstdc++-12-dev-amd64-cross (12.2.0-1cross1) ... Setting up man-db (2.10.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... egrep: warning: egrep is obsolescent; using grep -E egrep: warning: egrep is obsolescent; using grep -E update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version egrep: warning: egrep is obsolescent; using grep -E grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up cmake (3.24.1-1) ... Setting up gcc-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up gcc-x86-64-linux-gnu (4:12.2.0-1) ... Setting up debhelper (13.9.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:12.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (12.2.0-1) ... Setting up libc6:amd64 (2.34-7) ... Setting up libffi8:amd64 (3.4.2-4) ... Setting up libasan8:amd64 (12.2.0-1) ... Setting up libtasn1-6:amd64 (4.18.0-4) ... Setting up libtsan2:amd64 (12.2.0-1) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:amd64 (12.2.0-1) ... Setting up liblsan0:amd64 (12.2.0-1) ... Setting up libitm1:amd64 (12.2.0-1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4) ... Setting up libzstd1:amd64 (1.5.2+dfsg-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up libssl3:amd64 (3.0.5-2) ... Setting up libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12) ... Setting up libnghttp2-14:amd64 (1.49.0-1) ... Setting up libunistring2:amd64 (1.0-1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:amd64 (1:4.4.28-2) ... Setting up libidn2-0:amd64 (2.3.3-1+b1) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12.2.0-1) ... Setting up libaec0:amd64 (1.0.6-1) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-8) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... Setting up libgmp10:amd64 (2:6.2.1+dfsg1-1) ... Setting up libquadmath0:amd64 (12.2.0-1) ... Setting up libp11-kit0:amd64 (0.24.1-1) ... Setting up libssl-dev:amd64 (3.0.5-2) ... Setting up libatomic1:amd64 (12.2.0-1) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-8) ... Setting up libgfortran5:amd64 (12.2.0-1) ... Setting up libboost-math1.74.0:amd64 (1.74.0-17) ... Setting up libubsan1:amd64 (12.2.0-1) ... Setting up libcrypt-dev:amd64 (1:4.4.28-2) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libblas-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.6-1) ... Setting up libjsoncpp-dev:amd64 (1.9.5-4) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libhogweed6:amd64 (3.8.1-2) ... Setting up libaec-dev:amd64 (1.0.6-1) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libsuperlu5:amd64 (5.3.0+dfsg1-2) ... Setting up libgnutls30:amd64 (3.7.7-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgcc-12-dev:amd64 (12.2.0-1) ... Setting up liblapack-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12) ... Setting up libsuperlu-dev:amd64 (5.3.0+dfsg1-2) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libarpack2-dev:amd64 (3.8.0-1) ... Setting up libarmadillo11:amd64 (1:11.2.3+dfsg-1) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libcurl4:amd64 (7.85.0-1) ... Setting up libcurl4-openssl-dev:amd64 (7.85.0-1) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.8+repack-1) ... Setting up libc6-dev:amd64 (2.34-7) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-1) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.8+repack-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.2-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.8+repack-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.8+repack-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-17) ... Setting up libjpeg-dev:amd64 (1:2.1.2-1) ... Setting up libbamtools-dev:amd64 (2.5.2+dfsg-2) ... Setting up libhdf5-dev:amd64 (1.10.8+repack-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-math1.74-dev:amd64 (1.74.0-17) ... Setting up libboost-math-dev:amd64 (1.74.0.3) ... Setting up libarmadillo-dev:amd64 (1:11.2.3+dfsg-1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-0.bpo.15-arm64 #1 SMP Debian 5.10.120-1~bpo10+1 (2022-06-13) arm64 (aarch64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-12_12.2.0-1 gcc-12_12.2.0-1 libc6-dev_2.34-7 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-amd64-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-amd64-cross_12.2.0-1cross1 linux-libc-dev_5.19.6-1 Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2 binutils-aarch64-linux-gnu_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 cmake_3.24.1-1 cmake-data_3.24.1-1 coreutils_8.32-4.1 cpp_4:12.2.0-1 cpp-12_12.2.0-1 cpp-12-x86-64-linux-gnu_12.2.0-1cross1 cpp-x86-64-linux-gnu_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-elpa-helper_2.0.11 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-12_12.2.0-1 g++-12-x86-64-linux-gnu_12.2.0-1cross1 g++-x86-64-linux-gnu_4:12.2.0-1 gcc_4:12.2.0-1 gcc-12_12.2.0-1 gcc-12-base_12.2.0-1 gcc-12-cross-base_12.2.0-1cross1 gcc-12-x86-64-linux-gnu_12.2.0-1cross1 gcc-12-x86-64-linux-gnu-base_12.2.0-1cross1 gcc-x86-64-linux-gnu_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.39-1 grep_3.8-1 groff-base_1.22.4-8 gzip_1.12-1 hdf5-helpers_1.10.8+repack-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libarmadillo-dev_1:11.2.3+dfsg-1 libarmadillo11_1:11.2.3+dfsg-1 libarpack2_3.8.0-1 libarpack2-dev_3.8.0-1 libasan8_12.2.0-1 libasan8-amd64-cross_12.2.0-1cross1 libatomic1_12.2.0-1 libatomic1-amd64-cross_12.2.0-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.38.90.20220713-2 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1 libboost-math-dev_1.74.0.3 libboost-math1.74-dev_1.74.0-17 libboost-math1.74.0_1.74.0-17 libboost1.74-dev_1.74.0-17 libbrotli1_1.0.9-2+b4 libbz2-1.0_1.0.8-5 libc-bin_2.34-7 libc-dev-bin_2.34-7 libc6_2.34-7 libc6-amd64-cross_2.34-3cross1 libc6-dev_2.34-7 libc6-dev-amd64-cross_2.34-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libcurl4_7.85.0-1 libcurl4-openssl-dev_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.21.9 libelf1_0.187-2 libexpat1_2.4.8-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-12-dev_12.2.0-1 libgcc-12-dev-amd64-cross_12.2.0-1cross1 libgcc-s1_12.2.0-1 libgcc-s1-amd64-cross_12.2.0-1cross1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgfortran5_12.2.0-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgomp1-amd64-cross_12.2.0-1cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 libhdf5-103-1_1.10.8+repack-1 libhdf5-cpp-103-1_1.10.8+repack-1 libhdf5-dev_1.10.8+repack-1 libhdf5-fortran-102_1.10.8+repack-1 libhdf5-hl-100_1.10.8+repack-1 libhdf5-hl-cpp-100_1.10.8+repack-1 libhdf5-hl-fortran-100_1.10.8+repack-1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-1 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-1 libitm1-amd64-cross_12.2.0-1cross1 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.12+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-1 liblsan0-amd64-cross_12.2.0-1cross1 liblz4-1_1.9.4-1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libprocps8_2:3.3.17-7+b1 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-1 libquadmath0-amd64-cross_12.2.0-1cross1 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsmithwaterman-dev_0.0+git20160702.2610e25-12 libsmithwaterman0_0.0+git20160702.2610e25-12 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.5-2 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-amd64-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-amd64-cross_12.2.0-1cross1 libsub-override-perl_0.09-3 libsuperlu-dev_5.3.0+dfsg1-2 libsuperlu5_5.3.0+dfsg1-2 libsystemd0_251.4-3 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan2_12.2.0-1 libtsan2-amd64-cross_12.2.0-1cross1 libubsan1_12.2.0-1 libubsan1-amd64-cross_12.2.0-1cross1 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libuv1_1.44.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1 linux-libc-dev-amd64-cross_5.18.16-1cross1 login_1:4.11.1+dfsg1-2 lsb-base_11.2 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7+b1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tvc Binary: tvc Architecture: any Version: 5.0.3+git20151221.80e144e+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Dominique Belhachemi , Andreas Tille Homepage: http://ioncommunity.thermofisher.com Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/tvc Vcs-Git: https://salsa.debian.org/med-team/tvc.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev Package-List: tvc deb science optional arch=any Checksums-Sha1: cd0223b1b1c96a2cc5a25fbc64e4e36a00347788 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz 7d0306db9bc6dc0e7cd4dede9e0a4fc26451cb66 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz Checksums-Sha256: 3339f118d2fe983bc028630d5bf5238b6e91b70a85e8046a742588a6c342740c 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz ea878d69c94a1606583404cf23717d6a1dcc537bc4e6bd2c559ad2650939a52f 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz Files: 68b468ca5054fb3260ad9de40131b632 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz 57be1c85cdcb34a4bc11e0493cbe5570 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEELWW8HrlmWm6X+XMKs/WUUoUhnh8FAmMXaFAUHG1kYmlsYWxA 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2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "mdbilal@disroot.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./tvc_5.0.3+git20151221.80e144e+dfsg-5.dsc dpkg-source: info: extracting tvc in /<> dpkg-source: info: unpacking tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz dpkg-source: info: unpacking tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake.patch dpkg-source: info: applying bamtools.patch dpkg-source: info: applying help.patch dpkg-source: info: applying hurd.patch dpkg-source: info: applying sse.patch dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-b2059b10-2e33-4aaa-a0ee-6ddaede11675 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tvc dpkg-buildpackage: info: source version 5.0.3+git20151221.80e144e+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CMAKE_CXX_FLAGS: '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3' -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> 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/<>/VariantCaller/EnsembleEval/DiagnosticJSON.cpp [ 33%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o -c /<>/VariantCaller/EnsembleEval/BiasGenerator.cpp [ 35%] Building CXX object 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/usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o -c /<>/VariantCaller/EnsembleEval/SkewGenerator.cpp [ 38%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -MF CMakeFiles/tvc.dir/external/vcflib/split.cpp.o.d -o CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -c /<>/external/vcflib/split.cpp [ 47%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o -MF 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/<>/external/vcflib/tabixpp/index.c: In function ‘ti_index_core’: /<>/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 336 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ [ 50%] Building C object CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o /usr/bin/x86_64-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o -MF CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o.d -o CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o -c /<>/external/vcflib/tabixpp/bgzf.c /<>/external/vcflib/tabixpp/bgzf.c: In function ‘_bgzf_check_EOF’: /<>/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 678 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> 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/usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -MF CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o.d -o CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -c /<>/Calibration/FlowAlignment.cpp [ 60%] Building CXX object CMakeFiles/tvc.dir/Util/OptArgs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller 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CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o CMakeFiles/tvcassembly.dir/IonVersion.cpp.o -o tvcassembly -lbamtools -lz -lpthread -ljsoncpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target tvcassembly make -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/tvcutils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -c /<>/VariantCaller/tvcutils/tvcutils.cpp [ 83%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o -c /<>/VariantCaller/tvcutils/prepare_hotspots.cpp [ 84%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o -c /<>/VariantCaller/tvcutils/validate_bed.cpp [ 86%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o -c /<>/VariantCaller/tvcutils/unify_vcf.cpp In file included from /<>/VariantCaller/tvcutils/viterbi.h:64, from /<>/VariantCaller/tvcutils/unify_vcf.cpp:19: /<>/VariantCaller/tvcutils/viterbi.hpp: In instantiation of ‘void markov_chain::optimal_path() [with T = long unsigned int]’: /<>/VariantCaller/tvcutils/viterbi.hpp:64:3: required from ‘void markov_chain::initialize(_ForwardIterator, _ForwardIterator, T, T) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; T = long unsigned int]’ /<>/VariantCaller/tvcutils/viterbi.hpp:38:13: required from ‘markov_chain::markov_chain(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; T = long unsigned int]’ /<>/VariantCaller/tvcutils/unify_vcf.cpp:550:69: required from here /<>/VariantCaller/tvcutils/viterbi.hpp:114:13: warning: ignoring return value of ‘constexpr bool std::operator!=(const reverse_iterator<_Iterator>&, const reverse_iterator<_Iterator>&) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >]’, declared with attribute ‘nodiscard’ [-Wunused-result] 114 | for (; it != rend(), vit != values.rend(); it++, vit++) { | ~~~^~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:47, from /<>/VariantCaller/tvcutils/unify_vcf.cpp:7: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator.h:458:5: note: declared here 458 | operator!=(const reverse_iterator<_Iterator>& __x, | ^~~~~~~~ [ 87%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o -c /<>/VariantCaller/TargetsManager.cpp [ 89%] Building CXX object CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o -MF CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o.d -o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o -c /<>/Util/OptArgs.cpp [ 90%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -c /<>/external/vcflib/Variant.cpp [ 92%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o -c /<>/external/vcflib/split.cpp [ 93%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o -c /<>/external/vcflib/tabixpp/tabix.cpp [ 95%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o /usr/bin/x86_64-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -c /<>/external/vcflib/tabixpp/index.c /<>/external/vcflib/tabixpp/index.c: In function ‘ti_index_core’: /<>/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 336 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ [ 96%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o /usr/bin/x86_64-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o -c /<>/external/vcflib/tabixpp/bgzf.c /<>/external/vcflib/tabixpp/bgzf.c: In function ‘_bgzf_check_EOF’: /<>/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 678 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object CMakeFiles/tvcutils.dir/IonVersion.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -MD -MT CMakeFiles/tvcutils.dir/IonVersion.cpp.o -MF CMakeFiles/tvcutils.dir/IonVersion.cpp.o.d -o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -c /<>/obj-x86_64-linux-gnu/IonVersion.cpp [100%] Linking CXX executable tvcutils /usr/bin/cmake -E cmake_link_script CMakeFiles/tvcutils.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse3 -Wl,-z,relro -rdynamic CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -o tvcutils -lbamtools -lz -ljsoncpp -lsmithwaterman -ldisorder make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target tvcutils make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/tvc/ -a cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/tvc-5.0.3\+git20151221.80e144e\+dfsg/debian/tvc AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tvc/usr/bin/tvc -- Installing: /<>/debian/tvc/usr/bin/tvcassembly -- Installing: /<>/debian/tvc/usr/bin/tvcutils -- Installing: /<>/debian/tvc/usr/bin/variant_caller_pipeline.py -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/sse -- Installing: /<>/debian/tvc/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt -- Installing: /<>/debian/tvc/usr/share/TVC/sse/motifset.txt -- Installing: /<>/debian/tvc/usr/share/TVC/examples -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1 -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.dict -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.fasta -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_original.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bam -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected/small_variants.vcf -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_merged_plain.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tvc/usr/bin/tvc debian/tvc/usr/bin/tvcutils were not linked against libdisorder.so.0 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tvc' in '../tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb'. dpkg-deb: building package 'tvc-dbgsym' in '../tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=any -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.buildinfo dpkg-genchanges --build=any -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-09-09T10:50:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.changes: --------------------------------------------------- Format: 1.8 Date: Mon, 05 Sep 2022 17:20:03 +0000 Source: tvc Binary: tvc tvc-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 5.0.3+git20151221.80e144e+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: tvc - genetic variant caller for Ion Torrent sequencing platforms Changes: tvc (5.0.3+git20151221.80e144e+dfsg-5) unstable; urgency=medium . * Team upload. * Add autopkgtest * Standards-Version: 4.6.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. 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2.38.1-1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libprocps8 (= 2:3.3.17-7+b1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-8), libsasl2-modules-db (= 2.1.28+dfsg-8), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsmartcols1 (= 2.38.1-1), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12), libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libssh2-1 (= 1.10.0-3+b1), libssl-dev (= 3.0.5-2), libssl3 (= 3.0.5-2), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsuperlu-dev (= 5.3.0+dfsg1-2), libsuperlu5 (= 5.3.0+dfsg1-2), libsystemd0 (= 251.4-3), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.6-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-3), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7+b1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1662398403" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb ----------------------------------------------------- new Debian package, version 2.0. size 11734568 bytes: control archive=708 bytes. 488 bytes, 12 lines control 398 bytes, 4 lines md5sums Package: tvc-dbgsym Source: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 11804 Depends: tvc (= 5.0.3+git20151221.80e144e+dfsg-5) Section: debug Priority: optional Description: debug symbols for tvc Build-Ids: 0009540e3ebebdd714952a3728e3168f9d3b70d5 429738905dc227ade5580d2e3efccf449d34f060 a66d3df775fc07aaa844684f1f99ea3442f536c3 drwxr-xr-x root/root 0 2022-09-05 17:20 ./ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 868920 2022-09-05 17:20 ./usr/lib/debug/.build-id/00/09540e3ebebdd714952a3728e3168f9d3b70d5.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 8241504 2022-09-05 17:20 ./usr/lib/debug/.build-id/42/9738905dc227ade5580d2e3efccf449d34f060.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/a6/ -rw-r--r-- root/root 2490240 2022-09-05 17:20 ./usr/lib/debug/.build-id/a6/6d3df775fc07aaa844684f1f99ea3442f536c3.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 470584 2022-09-05 17:20 ./usr/lib/debug/.dwz/x86_64-linux-gnu/tvc.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-09-05 17:20 ./usr/share/doc/tvc-dbgsym -> tvc tvc_5.0.3+git20151221.80e144e+dfsg-5_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 1074404 bytes: control archive=1684 bytes. 994 bytes, 16 lines control 2459 bytes, 28 lines md5sums Package: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3361 Depends: libarmadillo11 (>= 1:11.2.3+dfsg), libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libgcc-s1 (>= 3.0), libjsoncpp25 (>= 1.9.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3 Section: science Priority: optional Homepage: http://ioncommunity.thermofisher.com Description: genetic variant caller for Ion Torrent sequencing platforms Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions. drwxr-xr-x root/root 0 2022-09-05 17:20 ./ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/bin/ -rwxr-xr-x root/root 1156992 2022-09-05 17:20 ./usr/bin/tvc -rwxr-xr-x root/root 220880 2022-09-05 17:20 ./usr/bin/tvcassembly -rwxr-xr-x root/root 614552 2022-09-05 17:20 ./usr/bin/tvcutils -rwxr-xr-x root/root 12985 2022-09-05 17:20 ./usr/bin/variant_caller_pipeline.py drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/example1/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/example1/expected/ -rw-r--r-- root/root 6876 2015-12-21 20:38 ./usr/share/TVC/examples/example1/expected/TSVC_variants.vcf -rw-r--r-- root/root 6479 2015-12-21 20:38 ./usr/share/TVC/examples/example1/expected/small_variants.vcf -rw-r--r-- root/root 108 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.dict -rw-r--r-- root/root 3400 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.fasta -rw-r--r-- root/root 22 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.fasta.fai -rw-r--r-- root/root 225904 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bam -rw-r--r-- root/root 96 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bam.bai -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bed -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_merged_plain.bed -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_original.bed -rw-r--r-- root/root 70 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_unmerged_detail.bed drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/pluginMedia/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/pluginMedia/parameter_sets/ -rw-r--r-- root/root 2809 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2926 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2826 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json -rw-r--r-- root/root 2918 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json -rw-r--r-- root/root 3062 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2628 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2757 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/sse/ -rw-r--r-- root/root 683778 2015-12-21 20:38 ./usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt -rw-r--r-- root/root 451754 2015-12-21 20:38 ./usr/share/TVC/sse/motifset.txt drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/tvc/ -rw-r--r-- root/root 1078 2022-09-05 16:49 ./usr/share/doc/tvc/README.Debian -rw-r--r-- root/root 1356 2022-09-05 17:20 ./usr/share/doc/tvc/changelog.Debian.gz -rw-r--r-- root/root 2939 2022-09-05 17:19 ./usr/share/doc/tvc/copyright drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 135 2022-09-05 16:49 ./usr/share/lintian/overrides/tvc lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [577 B] Get:5 copy:/<>/apt_archive ./ Packages [663 B] Fetched 2203 B in 0s (51.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 14.1 MB of archives. After this operation, 52.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 netbase all 6.3 [19.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.2~rc2-2 [75.8 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 openssl arm64 3.0.5-2 [1389 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-4 [48.9 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.2~rc2-2 [161 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.39-1 [576 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.39.3-1 [789 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.39-1 [923 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 iso-codes all 4.11.0-1 [2834 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-2 [14.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-2 [11.2 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-2 [13.1 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b3 [15.8 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-2 [25.4 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-2 [8044 B] Get:23 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-2 [44.3 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libberkeleydb-perl arm64 0.64-1+b2 [120 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libhtml-tagset-perl all 3.20-5 [13.1 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.12-1 [93.7 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libhtml-parser-perl arm64 3.78-1 [103 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libcgi-pm-perl all 4.54-1 [224 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-4 [36.3 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b2 [15.3 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b2 [25.2 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-2 [11.0 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.32-1 [128 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.004000-1 [38.7 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-3 [36.7 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.02-1 [34.6 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-2 [33.7 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2 [103 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-2 [25.7 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.05-1 [28.0 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:65 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:66 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:80 http://mirror.einval.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.92-2 [338 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libio-socket-ssl-perl all 2.075-1 [220 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libwww-perl all 6.67-1 [194 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 liblz1 arm64 1.13-4 [40.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libmldbm-perl all 2.05-3 [18.8 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:103 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-2 [11.9 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-2 [13.5 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.20-1 [17.1 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.025+ds-1 [97.7 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.025+ds-1 [98.4 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.25-1 [52.2 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-2 [26.9 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-5 [8704 B] Get:120 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-2 [72.5 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 plzip arm64 1.10-4 [60.7 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-27 [163 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.1 MB in 0s (31.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 39084 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2~rc2-2_all.deb ... Unpacking readline-common (8.2~rc2-2) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.5-2_arm64.deb ... Unpacking openssl (3.0.5-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.5-4_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-4) ... Selecting previously unselected package libreadline8:arm64. 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Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up liblz1:arm64 (1.13-4) ... Setting up libberkeleydb-perl:arm64 (0.64-1+b2) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:arm64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-5) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:arm64 (3.39.3-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:arm64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:arm64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:arm64 (0.26-2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-4) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.004000-1) ... Setting up libterm-readkey-perl (2.38-2) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-2) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up readline-common (8.2~rc2-2) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.2~rc2-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.78-1) ... Setting up gpgconf (2.2.39-1) ... Setting up libio-socket-ssl-perl (2.075-1) ... Setting up gpg (2.2.39-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:arm64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... Processing triggers for man-db (2.10.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 179680 Build-Time: 797 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 119 Job: tvc_5.0.3+git20151221.80e144e+dfsg-5 Lintian: pass Machine Architecture: arm64 Package: tvc Package-Time: 952 Source-Version: 5.0.3+git20151221.80e144e+dfsg-5 Space: 179680 Status: successful Version: 5.0.3+git20151221.80e144e+dfsg-5 -------------------------------------------------------------------------------- Finished at 2022-09-09T10:50:34Z Build needed 00:15:52, 179680k disk space