sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | tvc 5.0.3+git20151221.80e144e+dfsg-5 (i386) Sun, 04 Jun 2023 00:02:15 +0000 | +==============================================================================+ Package: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Source Version: 5.0.3+git20151221.80e144e+dfsg-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.9Lz7VK0Pr3... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/tvc-ElQSIT/resolver-PaKHKF' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [195 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.0 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9324 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9299 kB] Fetched 28.9 MB in 8s (3540 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libssl3 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1800 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libssl3 arm64 3.0.9-1 [1800 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1800 kB in 0s (34.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10810 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.9-1_arm64.deb ... Unpacking libssl3:arm64 (3.0.9-1) over (3.0.8-1) ... Setting up libssl3:arm64 (3.0.9-1) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'tvc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tvc.git Please use: git clone https://salsa.debian.org/med-team/tvc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 757 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (dsc) [2227 B] Get:2 http://mirror.einval.org/debian unstable/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (tar) [745 kB] Get:3 http://mirror.einval.org/debian unstable/main tvc 5.0.3+git20151221.80e144e+dfsg-5 (diff) [9800 B] Fetched 757 kB in 0s (2769 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/tvc-ElQSIT/tvc-5.0.3+git20151221.80e144e+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/tvc-ElQSIT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [810 B] Get:5 copy:/<>/apt_archive ./ Packages [852 B] Fetched 2271 B in 0s (99.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base hdf5-helpers:i386 intltool-debian libaec-dev:i386 libaec0:i386 libarchive-zip-perl libarchive13 libarmadillo-dev:i386 libarmadillo11:i386 libarpack2:i386 libarpack2-dev:i386 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbamtools-dev:i386 libbamtools2.5.2:i386 libblas-dev:i386 libblas3:i386 libboost-math-dev:i386 libboost-math1.74-dev:i386 libboost-math1.74.0:i386 libboost1.74-dev:i386 libbrotli1 libbrotli1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl4 libcurl4:i386 libcurl4-openssl-dev:i386 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:i386 libdisorder0:i386 libelf1 libexpat1 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgfortran5:i386 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhdf5-103-1:i386 libhdf5-cpp-103-1:i386 libhdf5-dev:i386 libhdf5-fortran-102:i386 libhdf5-hl-100:i386 libhdf5-hl-cpp-100:i386 libhdf5-hl-fortran-100:i386 libhogweed6:i386 libicu72 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg-dev:i386 libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjsoncpp-dev:i386 libjsoncpp25 libjsoncpp25:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblapack-dev:i386 liblapack3:i386 libldap-2.5-0 libldap-2.5-0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnettle8:i386 libnghttp2-14 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpipeline1 libproc2-0 libpsl5 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsmithwaterman-dev:i386 libsmithwaterman0:i386 libssh2-1 libssh2-1:i386 libssl-dev:i386 libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsuperlu-dev:i386 libsuperlu5:i386 libsz2:i386 libtasn1-6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-i686-linux-gnu gcc-12-doc gcc-12-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libitpp-dev:i386 libbamtools-doc:i386 liblapack-doc:i386 libboost1.74-doc:i386 libboost-atomic1.74-dev:i386 libboost-chrono1.74-dev:i386 libboost-container1.74-dev:i386 libboost-context1.74-dev:i386 libboost-contract1.74-dev:i386 libboost-coroutine1.74-dev:i386 libboost-date-time1.74-dev:i386 libboost-exception1.74-dev:i386 libboost-fiber1.74-dev:i386 libboost-filesystem1.74-dev:i386 libboost-graph1.74-dev:i386 libboost-graph-parallel1.74-dev:i386 libboost-iostreams1.74-dev:i386 libboost-locale1.74-dev:i386 libboost-log1.74-dev:i386 libboost-mpi1.74-dev:i386 libboost-mpi-python1.74-dev:i386 libboost-numpy1.74-dev:i386 libboost-program-options1.74-dev:i386 libboost-python1.74-dev:i386 libboost-random1.74-dev:i386 libboost-regex1.74-dev:i386 libboost-serialization1.74-dev:i386 libboost-stacktrace1.74-dev:i386 libboost-system1.74-dev:i386 libboost-test1.74-dev:i386 libboost-thread1.74-dev:i386 libboost-timer1.74-dev:i386 libboost-type-erasure1.74-dev:i386 libboost-wave1.74-dev:i386 libboost1.74-tools-dev:i386 libmpfrc++-dev:i386 libntl-dev:i386 libboost-nowide1.74-dev:i386 glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libcurl4-doc:i386 libidn-dev:i386 libkrb5-dev:i386 libldap2-dev:i386 librtmp-dev:i386 libssh2-1-dev:i386 pkg-config:i386 gnutls-bin:i386 krb5-doc:i386 krb5-user:i386 libhdf5-doc:i386 libssl-doc:i386 libstdc++-12-doc:i386 libsuperlu-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates ca-certificates:i386 libarchive-cpio-perl krb5-locales:i386 libldap-common libldap-common:i386 libgpm2 publicsuffix publicsuffix:i386 libsasl2-modules libsasl2-modules:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base hdf5-helpers:i386 intltool-debian libaec-dev:i386 libaec0:i386 libarchive-zip-perl libarchive13 libarmadillo-dev:i386 libarmadillo11:i386 libarpack2:i386 libarpack2-dev:i386 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbamtools-dev:i386 libbamtools2.5.2:i386 libblas-dev:i386 libblas3:i386 libboost-math-dev:i386 libboost-math1.74-dev:i386 libboost-math1.74.0:i386 libboost1.74-dev:i386 libbrotli1 libbrotli1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl4 libcurl4:i386 libcurl4-openssl-dev:i386 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:i386 libdisorder0:i386 libelf1 libexpat1 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgfortran5:i386 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhdf5-103-1:i386 libhdf5-cpp-103-1:i386 libhdf5-dev:i386 libhdf5-fortran-102:i386 libhdf5-hl-100:i386 libhdf5-hl-cpp-100:i386 libhdf5-hl-fortran-100:i386 libhogweed6:i386 libicu72 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg-dev:i386 libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjsoncpp-dev:i386 libjsoncpp25 libjsoncpp25:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblapack-dev:i386 liblapack3:i386 libldap-2.5-0 libldap-2.5-0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnettle8:i386 libnghttp2-14 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpipeline1 libproc2-0 libpsl5 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsmithwaterman-dev:i386 libsmithwaterman0:i386 libssh2-1 libssh2-1:i386 libssl-dev:i386 libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsuperlu-dev:i386 libsuperlu5:i386 libsz2:i386 libtasn1-6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:i386 sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After this operation, 649 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.4-4 [122 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.3-1 [60.5 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.3-1 [752 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-11 [20.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg-11 [57.8 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.53.0-1 [68.8 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libcurl4 arm64 7.88.1-10 [362 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu-base arm64 12.2.0-14cross1 [37.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 cpp-12-i686-linux-gnu arm64 12.2.0-14cross1 [8762 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:12.2.0-3 [3968 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.40-2 [2362 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.36-8cross1 [1340 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 12.2.0-14cross1 [59.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 12.2.0-14cross1 [118 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 12.2.0-14cross1 [27.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 12.2.0-14cross1 [7472 B] Get:51 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 12.2.0-14cross1 [2080 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 12.2.0-14cross1 [618 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 12.2.0-14cross1 [870 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 12.2.0-14cross1 [227 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-i386-cross all 12.2.0-14cross1 [2428 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu arm64 12.2.0-14cross1 [17.4 MB] Get:57 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:12.2.0-3 [1464 B] Get:58 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.1.4-1cross1 [1839 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.36-8cross1 [1715 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-i386-cross all 12.2.0-14cross1 [2084 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 g++-12-i686-linux-gnu arm64 12.2.0-14cross1 [9598 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:12.2.0-3 [1172 B] Get:63 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:77 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:84 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 gcc-12-base i386 12.2.0-14 [37.5 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 hdf5-helpers i386 1.10.8+repack1-1 [27.9 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 12.2.0-14 [59.5 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.36-9 [2626 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get:98 http://mirror.einval.org/debian unstable/main i386 libaec-dev i386 1.0.6-1+b1 [21.5 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libblas3 i386 3.11.0-2 [139 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 12.2.0-14 [226 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libarpack2 i386 3.8.0-3 [97.4 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 12.2.0-14 [661 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libsuperlu5 i386 5.3.0+dfsg1-2+b1 [168 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libarmadillo11 i386 1:11.4.2+dfsg-1 [105 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libblas-dev i386 3.11.0-2 [151 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 liblapack-dev i386 3.11.0-2 [4187 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libarpack2-dev i386 3.8.0-3 [117 kB] Get:110 http://mirror.einval.org/debian unstable/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2 [20.1 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-2 [35.1 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-2 [82.4 kB] Get:114 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2 [9284 B] Get:115 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.0.9-1 [2019 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-2 [359 kB] Get:117 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-2 [144 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 libunistring2 i386 1.0-2 [435 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 libidn2-0 i386 2.3.3-1+b1 [126 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.2.1+dfsg1-1.1 [574 kB] Get:121 http://mirror.einval.org/debian unstable/main i386 libnettle8 i386 3.8.1-2 [301 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 libhogweed6 i386 3.8.1-2 [331 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.4-1 [21.1 kB] Get:124 http://mirror.einval.org/debian unstable/main i386 libp11-kit0 i386 0.24.1-2 [335 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-2 [58.4 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libgnutls30 i386 3.7.9-2 [1404 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libdb5.3 i386 5.3.28+dfsg2-1 [759 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg-11 [21.1 kB] Get:129 http://mirror.einval.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg-11 [62.5 kB] Get:130 http://mirror.einval.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libnghttp2-14 i386 1.53.0-1 [81.6 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.2.13.dfsg-1 [82.6 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get:136 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.4+dfsg2-5 [274 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 libcurl4 i386 7.88.1-10 [420 kB] Get:138 http://mirror.einval.org/debian unstable/main i386 libhdf5-103-1 i386 1.10.8+repack1-1 [1175 kB] Get:139 http://mirror.einval.org/debian unstable/main i386 libhdf5-fortran-102 i386 1.10.8+repack1-1 [101 kB] Get:140 http://mirror.einval.org/debian unstable/main i386 libhdf5-hl-100 i386 1.10.8+repack1-1 [79.3 kB] Get:141 http://mirror.einval.org/debian unstable/main i386 libhdf5-hl-fortran-100 i386 1.10.8+repack1-1 [46.2 kB] Get:142 http://mirror.einval.org/debian unstable/main i386 libhdf5-cpp-103-1 i386 1.10.8+repack1-1 [136 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 libhdf5-hl-cpp-100 i386 1.10.8+repack1-1 [26.0 kB] Get:144 http://mirror.einval.org/debian unstable/main i386 linux-libc-dev i386 6.1.27-1 [1776 kB] Get:145 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.33-2 [95.6 kB] Get:146 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.33-2 [126 kB] Get:147 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB] Get:148 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:149 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB] Get:150 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:151 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.36-9 [1718 kB] Get:152 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get:153 http://mirror.einval.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get:154 http://mirror.einval.org/debian unstable/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get:155 http://mirror.einval.org/debian unstable/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get:156 http://mirror.einval.org/debian unstable/main i386 libcurl4-openssl-dev i386 7.88.1-10 [534 kB] Get:157 http://mirror.einval.org/debian unstable/main i386 libssl-dev i386 3.0.9-1 [2487 kB] Get:158 http://mirror.einval.org/debian unstable/main i386 libhdf5-dev i386 1.10.8+repack1-1 [2754 kB] Get:159 http://mirror.einval.org/debian unstable/main i386 libsuperlu-dev i386 5.3.0+dfsg1-2+b1 [22.4 kB] Get:160 http://mirror.einval.org/debian unstable/main i386 libarmadillo-dev i386 1:11.4.2+dfsg-1 [403 kB] Get:161 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 12.2.0-14 [2079 kB] Get:162 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 12.2.0-14 [7692 B] Get:163 http://mirror.einval.org/debian unstable/main i386 libbamtools2.5.2 i386 2.5.2+dfsg-4 [165 kB] Get:164 http://mirror.einval.org/debian unstable/main i386 libbamtools-dev i386 2.5.2+dfsg-4 [233 kB] Get:165 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 12.2.0-14 [121 kB] Get:166 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 12.2.0-14 [27.6 kB] Get:167 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 12.2.0-14 [870 kB] Get:168 http://mirror.einval.org/debian unstable/main i386 libgcc-12-dev i386 12.2.0-14 [2432 kB] Get:169 http://mirror.einval.org/debian unstable/main i386 libstdc++-12-dev i386 12.2.0-14 [2101 kB] Get:170 http://mirror.einval.org/debian unstable/main i386 libboost1.74-dev i386 1.74.0+ds1-21 [9508 kB] Get:171 http://mirror.einval.org/debian unstable/main i386 libboost-math1.74.0 i386 1.74.0+ds1-21 [438 kB] Get:172 http://mirror.einval.org/debian unstable/main i386 libboost-math1.74-dev i386 1.74.0+ds1-21 [544 kB] Get:173 http://mirror.einval.org/debian unstable/main i386 libboost-math-dev i386 1.74.0.3 [4536 B] Get:174 http://mirror.einval.org/debian unstable/main i386 libdisorder0 i386 0.0.2+git20130809.8062ee1-4+b1 [4880 B] Get:175 http://mirror.einval.org/debian unstable/main i386 libdisorder-dev i386 0.0.2+git20130809.8062ee1-4+b1 [4900 B] Get:176 http://mirror.einval.org/debian unstable/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get:177 http://mirror.einval.org/debian unstable/main i386 libjsoncpp-dev i386 1.9.5-4 [26.4 kB] Get:178 http://mirror.einval.org/debian unstable/main i386 libsmithwaterman0 i386 0.0+git20160702.2610e25-12+b1 [38.7 kB] Get:179 http://mirror.einval.org/debian unstable/main i386 libsmithwaterman-dev i386 0.0+git20160702.2610e25-12+b1 [43.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 MB in 11s (12.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10810 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.4-4_arm64.deb ... Unpacking libncursesw6:arm64 (6.4-4) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.3-1_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.3-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.3-1_arm64.deb ... Unpacking procps (2:4.0.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../006-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../020-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../021-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../022-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../023-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../024-libsasl2-modules-db_2.1.28+dfsg-11_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-11) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../025-libsasl2-2_2.1.28+dfsg-11_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-11) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../026-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../027-libnghttp2-14_1.53.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.53.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../028-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../029-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../030-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../031-libcurl4_7.88.1-10_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-10) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../032-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../033-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../034-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../035-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../036-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.25.1-1_arm64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package gcc-12-i686-linux-gnu-base:arm64. Preparing to unpack .../038-gcc-12-i686-linux-gnu-base_12.2.0-14cross1_arm64.deb ... Unpacking gcc-12-i686-linux-gnu-base:arm64 (12.2.0-14cross1) ... Selecting previously unselected package cpp-12-i686-linux-gnu. Preparing to unpack .../039-cpp-12-i686-linux-gnu_12.2.0-14cross1_arm64.deb ... Unpacking cpp-12-i686-linux-gnu (12.2.0-14cross1) ... Selecting previously unselected package cpp-i686-linux-gnu. Preparing to unpack .../040-cpp-i686-linux-gnu_4%3a12.2.0-3_arm64.deb ... Unpacking cpp-i686-linux-gnu (4:12.2.0-3) ... Selecting previously unselected package cross-config. Preparing to unpack .../041-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../042-binutils-i686-linux-gnu_2.40-2_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.40-2) ... Selecting previously unselected package gcc-12-cross-base. Preparing to unpack .../043-gcc-12-cross-base_12.2.0-14cross1_all.deb ... Unpacking gcc-12-cross-base (12.2.0-14cross1) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../044-libc6-i386-cross_2.36-8cross1_all.deb ... Unpacking libc6-i386-cross (2.36-8cross1) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../045-libgcc-s1-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libgcc-s1-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libgomp1-i386-cross. Preparing to unpack .../046-libgomp1-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libgomp1-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libitm1-i386-cross. Preparing to unpack .../047-libitm1-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libitm1-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libatomic1-i386-cross. Preparing to unpack .../048-libatomic1-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libatomic1-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libasan8-i386-cross. Preparing to unpack .../049-libasan8-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libasan8-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libstdc++6-i386-cross. Preparing to unpack .../050-libstdc++6-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libstdc++6-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libubsan1-i386-cross. Preparing to unpack .../051-libubsan1-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libubsan1-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libquadmath0-i386-cross. Preparing to unpack .../052-libquadmath0-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libquadmath0-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package libgcc-12-dev-i386-cross. Preparing to unpack .../053-libgcc-12-dev-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libgcc-12-dev-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package gcc-12-i686-linux-gnu. Preparing to unpack .../054-gcc-12-i686-linux-gnu_12.2.0-14cross1_arm64.deb ... Unpacking gcc-12-i686-linux-gnu (12.2.0-14cross1) ... Selecting previously unselected package gcc-i686-linux-gnu. Preparing to unpack .../055-gcc-i686-linux-gnu_4%3a12.2.0-3_arm64.deb ... Unpacking gcc-i686-linux-gnu (4:12.2.0-3) ... Selecting previously unselected package linux-libc-dev-i386-cross. Preparing to unpack .../056-linux-libc-dev-i386-cross_6.1.4-1cross1_all.deb ... Unpacking linux-libc-dev-i386-cross (6.1.4-1cross1) ... Selecting previously unselected package libc6-dev-i386-cross. Preparing to unpack .../057-libc6-dev-i386-cross_2.36-8cross1_all.deb ... Unpacking libc6-dev-i386-cross (2.36-8cross1) ... Selecting previously unselected package libstdc++-12-dev-i386-cross. Preparing to unpack .../058-libstdc++-12-dev-i386-cross_12.2.0-14cross1_all.deb ... Unpacking libstdc++-12-dev-i386-cross (12.2.0-14cross1) ... Selecting previously unselected package g++-12-i686-linux-gnu. Preparing to unpack .../059-g++-12-i686-linux-gnu_12.2.0-14cross1_arm64.deb ... Unpacking g++-12-i686-linux-gnu (12.2.0-14cross1) ... Selecting previously unselected package g++-i686-linux-gnu. Preparing to unpack .../060-g++-i686-linux-gnu_4%3a12.2.0-3_arm64.deb ... Unpacking g++-i686-linux-gnu (4:12.2.0-3) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../061-libconfig-inifiles-perl_3.000003-2_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../062-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../063-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../064-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../065-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../066-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1_arm64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../067-libxml-simple-perl_2.25-2_all.deb ... Unpacking libxml-simple-perl (2.25-2) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../068-libyaml-perl_1.30-2_all.deb ... Unpacking libyaml-perl (1.30-2) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../069-libconfig-auto-perl_0.44-2_all.deb ... Unpacking libconfig-auto-perl (0.44-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../070-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../071-libfile-homedir-perl_1.006-2_all.deb ... Unpacking libfile-homedir-perl (1.006-2) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../072-libdebian-dpkgcross-perl_2.6.20_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.20) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../073-dpkg-cross_2.6.20_all.deb ... Unpacking dpkg-cross (2.6.20) ... Selecting previously unselected package crossbuild-essential-i386. Preparing to unpack .../074-crossbuild-essential-i386_12.9_all.deb ... Unpacking crossbuild-essential-i386 (12.9) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../075-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../076-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../077-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../078-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../079-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../080-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../081-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../082-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../083-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../084-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../085-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../086-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../087-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libfakeroot:arm64. Preparing to unpack .../088-libfakeroot_1.31-1.2_arm64.deb ... Unpacking libfakeroot:arm64 (1.31-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../089-fakeroot_1.31-1.2_arm64.deb ... Unpacking fakeroot (1.31-1.2) ... Selecting previously unselected package gcc-12-base:i386. Preparing to unpack .../090-gcc-12-base_12.2.0-14_i386.deb ... Unpacking gcc-12-base:i386 (12.2.0-14) ... Selecting previously unselected package hdf5-helpers:i386. Preparing to unpack .../091-hdf5-helpers_1.10.8+repack1-1_i386.deb ... Unpacking hdf5-helpers:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libgcc-s1:i386. Preparing to unpack .../092-libgcc-s1_12.2.0-14_i386.deb ... Unpacking libgcc-s1:i386 (12.2.0-14) ... Selecting previously unselected package libc6:i386. Preparing to unpack .../093-libc6_2.36-9_i386.deb ... Unpacking libc6:i386 (2.36-9) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../094-libaec0_1.0.6-1+b1_i386.deb ... Unpacking libaec0:i386 (1.0.6-1+b1) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../095-libsz2_1.0.6-1+b1_i386.deb ... Unpacking libsz2:i386 (1.0.6-1+b1) ... Selecting previously unselected package libaec-dev:i386. Preparing to unpack .../096-libaec-dev_1.0.6-1+b1_i386.deb ... Unpacking libaec-dev:i386 (1.0.6-1+b1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../097-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libquadmath0:i386. Preparing to unpack .../098-libquadmath0_12.2.0-14_i386.deb ... Unpacking libquadmath0:i386 (12.2.0-14) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../099-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../100-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package libarpack2:i386. Preparing to unpack .../101-libarpack2_3.8.0-3_i386.deb ... Unpacking libarpack2:i386 (3.8.0-3) ... Selecting previously unselected package libstdc++6:i386. Preparing to unpack .../102-libstdc++6_12.2.0-14_i386.deb ... Unpacking libstdc++6:i386 (12.2.0-14) ... Selecting previously unselected package libsuperlu5:i386. Preparing to unpack .../103-libsuperlu5_5.3.0+dfsg1-2+b1_i386.deb ... Unpacking libsuperlu5:i386 (5.3.0+dfsg1-2+b1) ... Selecting previously unselected package libarmadillo11:i386. Preparing to unpack .../104-libarmadillo11_1%3a11.4.2+dfsg-1_i386.deb ... Unpacking libarmadillo11:i386 (1:11.4.2+dfsg-1) ... Selecting previously unselected package libblas-dev:i386. Preparing to unpack .../105-libblas-dev_3.11.0-2_i386.deb ... Unpacking libblas-dev:i386 (3.11.0-2) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../106-liblapack-dev_3.11.0-2_i386.deb ... Unpacking liblapack-dev:i386 (3.11.0-2) ... Selecting previously unselected package libarpack2-dev:i386. Preparing to unpack .../107-libarpack2-dev_3.8.0-3_i386.deb ... Unpacking libarpack2-dev:i386 (3.8.0-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../108-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../109-libcom-err2_1.47.0-2_i386.deb ... Unpacking libcom-err2:i386 (1.47.0-2) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../110-libkrb5support0_1.20.1-2_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-2) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../111-libk5crypto3_1.20.1-2_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-2) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../112-libkeyutils1_1.6.3-2_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-2) ... Selecting previously unselected package libssl3:i386. Preparing to unpack .../113-libssl3_3.0.9-1_i386.deb ... Unpacking libssl3:i386 (3.0.9-1) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../114-libkrb5-3_1.20.1-2_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-2) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../115-libgssapi-krb5-2_1.20.1-2_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-2) ... Selecting previously unselected package libunistring2:i386. Preparing to unpack .../116-libunistring2_1.0-2_i386.deb ... Unpacking libunistring2:i386 (1.0-2) ... Selecting previously unselected package libidn2-0:i386. Preparing to unpack .../117-libidn2-0_2.3.3-1+b1_i386.deb ... Unpacking libidn2-0:i386 (2.3.3-1+b1) ... Selecting previously unselected package libgmp10:i386. Preparing to unpack .../118-libgmp10_2%3a6.2.1+dfsg1-1.1_i386.deb ... Unpacking libgmp10:i386 (2:6.2.1+dfsg1-1.1) ... Selecting previously unselected package libnettle8:i386. Preparing to unpack .../119-libnettle8_3.8.1-2_i386.deb ... Unpacking libnettle8:i386 (3.8.1-2) ... Selecting previously unselected package libhogweed6:i386. Preparing to unpack .../120-libhogweed6_3.8.1-2_i386.deb ... Unpacking libhogweed6:i386 (3.8.1-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../121-libffi8_3.4.4-1_i386.deb ... Unpacking libffi8:i386 (3.4.4-1) ... Selecting previously unselected package libp11-kit0:i386. Preparing to unpack .../122-libp11-kit0_0.24.1-2_i386.deb ... Unpacking libp11-kit0:i386 (0.24.1-2) ... Selecting previously unselected package libtasn1-6:i386. Preparing to unpack .../123-libtasn1-6_4.19.0-2_i386.deb ... Unpacking libtasn1-6:i386 (4.19.0-2) ... Selecting previously unselected package libgnutls30:i386. Preparing to unpack .../124-libgnutls30_3.7.9-2_i386.deb ... Unpacking libgnutls30:i386 (3.7.9-2) ... Selecting previously unselected package libdb5.3:i386. Preparing to unpack .../125-libdb5.3_5.3.28+dfsg2-1_i386.deb ... Unpacking libdb5.3:i386 (5.3.28+dfsg2-1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../126-libsasl2-modules-db_2.1.28+dfsg-11_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-11) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../127-libsasl2-2_2.1.28+dfsg-11_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-11) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../128-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../129-libnghttp2-14_1.53.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.53.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../130-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package zlib1g:i386. Preparing to unpack .../131-zlib1g_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../132-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../133-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libzstd1:i386. Preparing to unpack .../134-libzstd1_1.5.4+dfsg2-5_i386.deb ... Unpacking libzstd1:i386 (1.5.4+dfsg2-5) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../135-libcurl4_7.88.1-10_i386.deb ... Unpacking libcurl4:i386 (7.88.1-10) ... Selecting previously unselected package libhdf5-103-1:i386. Preparing to unpack .../136-libhdf5-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-fortran-102:i386. Preparing to unpack .../137-libhdf5-fortran-102_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-100:i386. Preparing to unpack .../138-libhdf5-hl-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-fortran-100:i386. Preparing to unpack .../139-libhdf5-hl-fortran-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-cpp-103-1:i386. Preparing to unpack .../140-libhdf5-cpp-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-cpp-100:i386. Preparing to unpack .../141-libhdf5-hl-cpp-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package linux-libc-dev:i386. Preparing to unpack .../142-linux-libc-dev_6.1.27-1_i386.deb ... Unpacking linux-libc-dev:i386 (6.1.27-1) ... Selecting previously unselected package libcrypt1:i386. Preparing to unpack .../143-libcrypt1_1%3a4.4.33-2_i386.deb ... Unpacking libcrypt1:i386 (1:4.4.33-2) ... Selecting previously unselected package libcrypt-dev:i386. Preparing to unpack .../144-libcrypt-dev_1%3a4.4.33-2_i386.deb ... Unpacking libcrypt-dev:i386 (1:4.4.33-2) ... Selecting previously unselected package libtirpc3:i386. Preparing to unpack .../145-libtirpc3_1.3.3+ds-1_i386.deb ... Unpacking libtirpc3:i386 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../146-libnsl2_1.3.0-2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:i386. Preparing to unpack .../147-libtirpc-dev_1.3.3+ds-1_i386.deb ... Unpacking libtirpc-dev:i386 (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:i386. Preparing to unpack .../148-libnsl-dev_1.3.0-2_i386.deb ... Unpacking libnsl-dev:i386 (1.3.0-2) ... Selecting previously unselected package libc6-dev:i386. Preparing to unpack .../149-libc6-dev_2.36-9_i386.deb ... Unpacking libc6-dev:i386 (2.36-9) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../150-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../151-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg62-turbo-dev:i386. Preparing to unpack .../152-libjpeg62-turbo-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg-dev:i386. Preparing to unpack .../153-libjpeg-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libcurl4-openssl-dev:i386. Preparing to unpack .../154-libcurl4-openssl-dev_7.88.1-10_i386.deb ... Unpacking libcurl4-openssl-dev:i386 (7.88.1-10) ... Selecting previously unselected package libssl-dev:i386. Preparing to unpack .../155-libssl-dev_3.0.9-1_i386.deb ... Unpacking libssl-dev:i386 (3.0.9-1) ... Selecting previously unselected package libhdf5-dev:i386. Preparing to unpack .../156-libhdf5-dev_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-dev:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libsuperlu-dev:i386. Preparing to unpack .../157-libsuperlu-dev_5.3.0+dfsg1-2+b1_i386.deb ... Unpacking libsuperlu-dev:i386 (5.3.0+dfsg1-2+b1) ... Selecting previously unselected package libarmadillo-dev:i386. Preparing to unpack .../158-libarmadillo-dev_1%3a11.4.2+dfsg-1_i386.deb ... Unpacking libarmadillo-dev:i386 (1:11.4.2+dfsg-1) ... Selecting previously unselected package libasan8:i386. Preparing to unpack .../159-libasan8_12.2.0-14_i386.deb ... Unpacking libasan8:i386 (12.2.0-14) ... Selecting previously unselected package libatomic1:i386. Preparing to unpack .../160-libatomic1_12.2.0-14_i386.deb ... Unpacking libatomic1:i386 (12.2.0-14) ... Selecting previously unselected package libbamtools2.5.2:i386. Preparing to unpack .../161-libbamtools2.5.2_2.5.2+dfsg-4_i386.deb ... Unpacking libbamtools2.5.2:i386 (2.5.2+dfsg-4) ... Selecting previously unselected package libbamtools-dev:i386. Preparing to unpack .../162-libbamtools-dev_2.5.2+dfsg-4_i386.deb ... Unpacking libbamtools-dev:i386 (2.5.2+dfsg-4) ... Selecting previously unselected package libgomp1:i386. Preparing to unpack .../163-libgomp1_12.2.0-14_i386.deb ... Unpacking libgomp1:i386 (12.2.0-14) ... Selecting previously unselected package libitm1:i386. Preparing to unpack .../164-libitm1_12.2.0-14_i386.deb ... Unpacking libitm1:i386 (12.2.0-14) ... Selecting previously unselected package libubsan1:i386. Preparing to unpack .../165-libubsan1_12.2.0-14_i386.deb ... Unpacking libubsan1:i386 (12.2.0-14) ... Selecting previously unselected package libgcc-12-dev:i386. Preparing to unpack .../166-libgcc-12-dev_12.2.0-14_i386.deb ... Unpacking libgcc-12-dev:i386 (12.2.0-14) ... Selecting previously unselected package libstdc++-12-dev:i386. Preparing to unpack .../167-libstdc++-12-dev_12.2.0-14_i386.deb ... Unpacking libstdc++-12-dev:i386 (12.2.0-14) ... Selecting previously unselected package libboost1.74-dev:i386. Preparing to unpack .../168-libboost1.74-dev_1.74.0+ds1-21_i386.deb ... Unpacking libboost1.74-dev:i386 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-math1.74.0:i386. Preparing to unpack .../169-libboost-math1.74.0_1.74.0+ds1-21_i386.deb ... Unpacking libboost-math1.74.0:i386 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-math1.74-dev:i386. Preparing to unpack .../170-libboost-math1.74-dev_1.74.0+ds1-21_i386.deb ... Unpacking libboost-math1.74-dev:i386 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-math-dev:i386. Preparing to unpack .../171-libboost-math-dev_1.74.0.3_i386.deb ... Unpacking libboost-math-dev:i386 (1.74.0.3) ... Selecting previously unselected package libdisorder0:i386. Preparing to unpack .../172-libdisorder0_0.0.2+git20130809.8062ee1-4+b1_i386.deb ... Unpacking libdisorder0:i386 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:i386. Preparing to unpack .../173-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_i386.deb ... Unpacking libdisorder-dev:i386 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../174-libjsoncpp25_1.9.5-4_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-4) ... Selecting previously unselected package libjsoncpp-dev:i386. Preparing to unpack .../175-libjsoncpp-dev_1.9.5-4_i386.deb ... Unpacking libjsoncpp-dev:i386 (1.9.5-4) ... Selecting previously unselected package libsmithwaterman0:i386. Preparing to unpack .../176-libsmithwaterman0_0.0+git20160702.2610e25-12+b1_i386.deb ... Unpacking libsmithwaterman0:i386 (0.0+git20160702.2610e25-12+b1) ... Selecting previously unselected package libsmithwaterman-dev:i386. Preparing to unpack .../177-libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1_i386.deb ... Unpacking libsmithwaterman-dev:i386 (0.0+git20160702.2610e25-12+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:i386. Preparing to unpack .../178-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libpsl5:arm64 (0.21.2-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up gcc-12-cross-base (12.2.0-14cross1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers:i386 (1.10.8+repack1-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.40-2) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libnghttp2-14:arm64 (1.53.0-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up linux-libc-dev:i386 (6.1.27-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libfakeroot:arm64 (1.31-1.2) ... Setting up gcc-12-base:i386 (12.2.0-14) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-11) ... Setting up gcc-12-i686-linux-gnu-base:arm64 (12.2.0-14cross1) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up linux-libc-dev-i386-cross (6.1.4-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libuv1:arm64 (1.44.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:arm64 (2:4.0.3-1) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:arm64 (1.9.5-4) ... Setting up libncursesw6:arm64 (6.4-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-11) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:arm64 (1.4.3-3) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up procps (2:4.0.3-1) ... Setting up libc6-i386-cross (2.36-8cross1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libquadmath0-i386-cross (12.2.0-14cross1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up cpp-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up libtool (2.4.7-5) ... Setting up libatomic1-i386-cross (12.2.0-14cross1) ... Setting up libarchive13:arm64 (3.6.2-1) ... Setting up libgomp1-i386-cross (12.2.0-14cross1) ... Setting up libc6-dev-i386-cross (2.36-8cross1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (12.2.0-14cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (12.2.0-14cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:arm64 (7.88.1-10) ... Setting up cpp-i686-linux-gnu (4:12.2.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (12.2.0-14cross1) ... Setting up libstdc++6-i386-cross (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Setting up libubsan1-i386-cross (12.2.0-14cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-12-dev-i386-cross (12.2.0-14cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libstdc++-12-dev-i386-cross (12.2.0-14cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up gcc-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up g++-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up gcc-i686-linux-gnu (4:12.2.0-3) ... Setting up dpkg-cross (2.6.20) ... Setting up g++-i686-linux-gnu (4:12.2.0-3) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (12.2.0-14) ... Setting up libc6:i386 (2.36-9) ... Setting up libffi8:i386 (3.4.4-1) ... Setting up libasan8:i386 (12.2.0-14) ... Setting up libtasn1-6:i386 (4.19.0-2) ... Setting up libdb5.3:i386 (5.3.28+dfsg2-1) ... Setting up libstdc++6:i386 (12.2.0-14) ... Setting up libitm1:i386 (12.2.0-14) ... Setting up libdisorder0:i386 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libzstd1:i386 (1.5.4+dfsg2-5) ... Setting up libkeyutils1:i386 (1.6.3-2) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libssl3:i386 (3.0.9-1) ... Setting up libsmithwaterman0:i386 (0.0+git20160702.2610e25-12+b1) ... Setting up libnghttp2-14:i386 (1.53.0-1) ... Setting up libunistring2:i386 (1.0-2) ... Setting up zlib1g:i386 (1:1.2.13.dfsg-1) ... Setting up libcrypt1:i386 (1:4.4.33-2) ... Setting up libidn2-0:i386 (2.3.3-1+b1) ... Setting up libcom-err2:i386 (1.47.0-2) ... Setting up libgomp1:i386 (12.2.0-14) ... Setting up libaec0:i386 (1.0.6-1+b1) ... Setting up libkrb5support0:i386 (1.20.1-2) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-11) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libnettle8:i386 (3.8.1-2) ... Setting up libgmp10:i386 (2:6.2.1+dfsg1-1.1) ... Setting up libquadmath0:i386 (12.2.0-14) ... Setting up libp11-kit0:i386 (0.24.1-2) ... Setting up libssl-dev:i386 (3.0.9-1) ... Setting up libatomic1:i386 (12.2.0-14) ... Setting up libjsoncpp25:i386 (1.9.5-4) ... Setting up libk5crypto3:i386 (1.20.1-2) ... Setting up libdisorder-dev:i386 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libbamtools2.5.2:i386 (2.5.2+dfsg-4) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-11) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up libboost-math1.74.0:i386 (1.74.0+ds1-21) ... Setting up libubsan1:i386 (12.2.0-14) ... Setting up libcrypt-dev:i386 (1:4.4.33-2) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libkrb5-3:i386 (1.20.1-2) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.6-1+b1) ... Setting up libjsoncpp-dev:i386 (1.9.5-4) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpsl5:i386 (0.21.2-1) ... Setting up libhogweed6:i386 (3.8.1-2) ... Setting up libaec-dev:i386 (1.0.6-1+b1) ... Setting up libarpack2:i386 (3.8.0-3) ... Setting up libsuperlu5:i386 (5.3.0+dfsg1-2+b1) ... Setting up libgnutls30:i386 (3.7.9-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgcc-12-dev:i386 (12.2.0-14) ... Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgssapi-krb5-2:i386 (1.20.1-2) ... Setting up libsmithwaterman-dev:i386 (0.0+git20160702.2610e25-12+b1) ... Setting up libsuperlu-dev:i386 (5.3.0+dfsg1-2+b1) ... Setting up libtirpc3:i386 (1.3.3+ds-1) ... Setting up libarpack2-dev:i386 (3.8.0-3) ... Setting up libarmadillo11:i386 (1:11.4.2+dfsg-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up libtirpc-dev:i386 (1.3.3+ds-1) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libcurl4:i386 (7.88.1-10) ... Setting up libcurl4-openssl-dev:i386 (7.88.1-10) ... Setting up libhdf5-103-1:i386 (1.10.8+repack1-1) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Setting up libc6-dev:i386 (2.36-9) ... Setting up libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Setting up libstdc++-12-dev:i386 (12.2.0-14) ... Setting up libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Setting up libboost1.74-dev:i386 (1.74.0+ds1-21) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libbamtools-dev:i386 (2.5.2+dfsg-4) ... Setting up libhdf5-dev:i386 (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-math1.74-dev:i386 (1.74.0+ds1-21) ... Setting up libboost-math-dev:i386 (1.74.0.3) ... Setting up libarmadillo-dev:i386 (1:11.4.2+dfsg-1) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.22 g++-12_12.2.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-i386-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-i386-cross_12.2.0-14cross1 linux-libc-dev_6.1.27-1 Package versions: adduser_3.134 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 binutils-aarch64-linux-gnu_2.40-2 binutils-common_2.40-2 binutils-i686-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-12_12.2.0-14 cpp-12-i686-linux-gnu_12.2.0-14cross1 cpp-i686-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-i386_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-12_12.2.0-14 g++-12-i686-linux-gnu_12.2.0-14cross1 g++-i686-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-12-i686-linux-gnu_12.2.0-14cross1 gcc-12-i686-linux-gnu-base_12.2.0-14cross1 gcc-i686-linux-gnu_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hdf5-helpers_1.10.8+repack1-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libaec-dev_1.0.6-1+b1 libaec0_1.0.6-1+b1 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libarmadillo-dev_1:11.4.2+dfsg-1 libarmadillo11_1:11.4.2+dfsg-1 libarpack2_3.8.0-3 libarpack2-dev_3.8.0-3 libasan8_12.2.0-14 libasan8-i386-cross_12.2.0-14cross1 libatomic1_12.2.0-14 libatomic1-i386-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbamtools-dev_2.5.2+dfsg-4 libbamtools2.5.2_2.5.2+dfsg-4 libbinutils_2.40-2 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.38.1-5+b1 libboost-math-dev_1.74.0.3 libboost-math1.74-dev_1.74.0+ds1-21 libboost-math1.74.0_1.74.0+ds1-21 libboost1.74-dev_1.74.0+ds1-21 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-9 libc-dev-bin_2.36-9 libc6_2.36-9 libc6-dev_2.36-9 libc6-dev-i386-cross_2.36-8cross1 libc6-i386-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_12.2.0-14 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libcurl4_7.88.1-10 libcurl4-openssl-dev_7.88.1-10 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1 libdisorder0_0.0.2+git20130809.8062ee1-4+b1 libdpkg-perl_1.21.22 libelf1_0.188-2.1 libexpat1_2.5.0-1 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev_12.2.0-14 libgcc-12-dev-i386-cross_12.2.0-14cross1 libgcc-s1_12.2.0-14 libgcc-s1-i386-cross_12.2.0-14cross1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14 libgomp1-i386-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-2 libhdf5-103-1_1.10.8+repack1-1 libhdf5-cpp-103-1_1.10.8+repack1-1 libhdf5-dev_1.10.8+repack1-1 libhdf5-fortran-102_1.10.8+repack1-1 libhdf5-hl-100_1.10.8+repack1-1 libhdf5-hl-cpp-100_1.10.8+repack1-1 libhdf5-hl-fortran-100_1.10.8+repack1-1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-14 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.25-1 libitm1_12.2.0-14 libitm1-i386-cross_12.2.0-14cross1 libjansson4_2.14-2 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5+b1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnghttp2-14_1.53.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libproc2-0_2:4.0.3-1 libpsl5_0.21.2-1 libquadmath0_12.2.0-14 libquadmath0-i386-cross_12.2.0-14cross1 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-11 libsasl2-modules-db_2.1.28+dfsg-11 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b6 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.4-2.1 libsmartcols1_2.38.1-5+b1 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1 libsmithwaterman0_0.0+git20160702.2610e25-12+b1 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.9-1 libssl3_3.0.9-1 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-i386-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-i386-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsuperlu-dev_5.3.0+dfsg1-2+b1 libsuperlu5_5.3.0+dfsg1-2+b1 libsystemd0_252.6-1 libsz2_1.0.6-1+b1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-14 libubsan1_12.2.0-14 libubsan1-i386-cross_12.2.0-14cross1 libuchardet0_0.0.7-1 libudev1_252.6-1 libunistring2_1.0-2 libuuid1_2.38.1-5+b1 libuv1_1.44.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.27-1 linux-libc-dev-i386-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 ncurses-base_6.4-4 ncurses-bin_6.4-4 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 procps_2:4.0.3-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tvc Binary: tvc Architecture: any Version: 5.0.3+git20151221.80e144e+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Dominique Belhachemi , Andreas Tille Homepage: http://ioncommunity.thermofisher.com Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/tvc Vcs-Git: https://salsa.debian.org/med-team/tvc.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, libjsoncpp-dev, libarmadillo-dev, libboost-math-dev, libsmithwaterman-dev Package-List: tvc deb science optional arch=any Checksums-Sha1: cd0223b1b1c96a2cc5a25fbc64e4e36a00347788 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz 7d0306db9bc6dc0e7cd4dede9e0a4fc26451cb66 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz Checksums-Sha256: 3339f118d2fe983bc028630d5bf5238b6e91b70a85e8046a742588a6c342740c 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz ea878d69c94a1606583404cf23717d6a1dcc537bc4e6bd2c559ad2650939a52f 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz Files: 68b468ca5054fb3260ad9de40131b632 744668 tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz 57be1c85cdcb34a4bc11e0493cbe5570 9800 tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEELWW8HrlmWm6X+XMKs/WUUoUhnh8FAmMXaFAUHG1kYmlsYWxA ZGlzcm9vdC5vcmcACgkQs/WUUoUhnh+ysRAAiyxZr7pHEECCI+zBkWyVyHtCbKXV 92OCJejyYySi8hxtO5sWWmzAOItLKK2myc5v9tT7KcWHMqXVI+bpcODJQrEuc4r2 flZVmncIMhbf3jQ74V7acpHAg3H5bfL9MaOIU/oSv/TWHhze3hUqbO4ve+YfQ/Se tS6PZ2OPU/9aMwB/LrHZ2iVIoVg4pqZGuJvnuaREY2h0hEeqvyia4NP/YMyF3GiJ AAG3Q6EEH02jXuWOMIJzeeXQy34gYo7+eXleJWWsyAD44kXZG5SviIAkiz+g3iju PxxpPc5Uc9I2IiYK7eszn8Lo50RHh96V2dnt/h2y0D9An2po+T4nmqrVnZgtUwWt Vu+F7drjYwvxle7LMzDO91e7Q/StoFpZ68wT5uM6vt/f7SVbynlBYkx5WmzzXXU0 clsk8ULkNjHRun8W7BD90q0aRIKzYXF/fgmNod+F6cUqFEnoWSeBV1ffJfmqWcsA fGlAl8Zbxp218ARhEI5ChBuJafF3X7qshr2kMmst6L4ANeMmuJSCMfGToSsr7IyF ucGnYuJSaM6TiGFDpEMeQ8K2SmXJIQpJmZLrrKSgogRVCVTbEn6aJMvx2CcPZ3K9 DEG7/a98g0c2pscQuOtOxHCpQhf7IhR3HN3JDiDgWWngNa/TwM5AlLD+gSF9ZvsP 28/UEK2eq2cT8P4= =PDPe -----END PGP SIGNATURE----- gpgv: Signature made Tue Sep 6 15:33:36 2022 UTC gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "mdbilal@disroot.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tvc_5.0.3+git20151221.80e144e+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting tvc in /<> dpkg-source: info: unpacking tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz dpkg-source: info: unpacking tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake.patch dpkg-source: info: applying bamtools.patch dpkg-source: info: applying help.patch dpkg-source: info: applying hurd.patch dpkg-source: info: applying sse.patch dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package tvc dpkg-buildpackage: info: source version 5.0.3+git20151221.80e144e+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CMAKE_CXX_FLAGS: '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2' -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-i686-linux-gnu dh_auto_build -a cd obj-i686-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/CMakeFiles/tvc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 1%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -c /<>/VariantCaller/VariantCaller.cpp /<>/VariantCaller/VariantCaller.cpp: In function ‘void TheSilenceOfTheArmadillos(std::ofstream&)’: /<>/VariantCaller/VariantCaller.cpp:36:24: warning: ‘void arma::set_stream_err1(std::ostream&)’ is deprecated [-Wdeprecated-declarations] 36 | arma::set_stream_err1(null_ostream); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/armadillo:385, from /<>/VariantCaller/VariantCaller.cpp:12: /usr/include/armadillo_bits/debug.hpp:92:1: note: declared here 92 | set_stream_err1(std::ostream& user_stream) | ^~~~~~~~~~~~~~~ /<>/VariantCaller/VariantCaller.cpp:37:24: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations] 37 | arma::set_stream_err2(null_ostream); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/armadillo_bits/debug.hpp:103:1: note: declared here 103 | set_stream_err2(std::ostream& user_stream) | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/BAMWalkerEngine.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/BAMWalkerEngine.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/BAMWalkerEngine.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/BAMWalkerEngine.cpp.o -c /<>/VariantCaller/BAMWalkerEngine.cpp [ 4%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/OrderedBAMWriter.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/OrderedBAMWriter.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/OrderedBAMWriter.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/OrderedBAMWriter.cpp.o -c /<>/VariantCaller/OrderedBAMWriter.cpp [ 6%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/SampleManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/SampleManager.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/SampleManager.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/SampleManager.cpp.o -c /<>/VariantCaller/SampleManager.cpp [ 7%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/TargetsManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/TargetsManager.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/TargetsManager.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/TargetsManager.cpp.o -c /<>/VariantCaller/TargetsManager.cpp [ 9%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o -c /<>/VariantCaller/HandleVariant.cpp [ 10%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o -c /<>/VariantCaller/HotspotReader.cpp [ 12%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o -c /<>/VariantCaller/MetricsManager.cpp [ 14%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o -c /<>/VariantCaller/Bookkeeping/MiscUtil.cpp [ 15%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o -c /<>/VariantCaller/Bookkeeping/ExtendParameters.cpp [ 17%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/InputStructures.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/InputStructures.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/InputStructures.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/InputStructures.cpp.o -c /<>/VariantCaller/Bookkeeping/InputStructures.cpp [ 18%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o -c /<>/VariantCaller/Bookkeeping/VcfFormat.cpp [ 20%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o -c /<>/VariantCaller/Reads/ExtendedReadInfo.cpp [ 21%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o -c /<>/VariantCaller/Splice/ErrorMotifs.cpp [ 23%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o -c /<>/VariantCaller/Splice/LocalContext.cpp [ 25%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o -c /<>/VariantCaller/Splice/ClassifyVariant.cpp [ 26%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o -c /<>/VariantCaller/Splice/SpliceVariantHypotheses.cpp [ 28%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o -c /<>/VariantCaller/Filter/DecisionTreeData.cpp [ 29%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o -c /<>/VariantCaller/Filter/VariantAssist.cpp /<>/VariantCaller/Filter/VariantAssist.cpp: In function ‘double VariantAssist::MannWhitneyU(std::vector&, std::vector&, bool)’: /<>/VariantCaller/Filter/VariantAssist.cpp:191:36: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 191 | fprintf(stdout, "ref.size()=%lu; ", ref.size()); | ~~^ ~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/VariantCaller/Filter/VariantAssist.cpp:192:36: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 192 | fprintf(stdout, "var.size()=%lu; ", var.size()); | ~~^ ~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/VariantCaller/Filter/VariantAssist.cpp:193:37: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 193 | fprintf(stdout, "both.size()=%lu; ", both.size()); | ~~^ ~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 31%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o -c /<>/VariantCaller/HypothesisEvaluator.cpp [ 32%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o -c /<>/VariantCaller/EnsembleEval/DiagnosticJSON.cpp [ 34%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o -c /<>/VariantCaller/EnsembleEval/BiasGenerator.cpp [ 35%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o -c /<>/VariantCaller/EnsembleEval/SigmaGenerator.cpp [ 37%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o -c /<>/VariantCaller/EnsembleEval/SkewGenerator.cpp [ 39%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o -c /<>/VariantCaller/EnsembleEval/PosteriorInference.cpp [ 40%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o -c /<>/VariantCaller/EnsembleEval/ShortStack.cpp [ 42%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o -c /<>/VariantCaller/EnsembleEval/StackEngine.cpp [ 43%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o -c /<>/VariantCaller/EnsembleEval/CrossHypotheses.cpp [ 45%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/Variant.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/Variant.cpp.o -MF CMakeFiles/tvc.dir/external/vcflib/Variant.cpp.o.d -o CMakeFiles/tvc.dir/external/vcflib/Variant.cpp.o -c /<>/external/vcflib/Variant.cpp [ 46%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/split.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -MF CMakeFiles/tvc.dir/external/vcflib/split.cpp.o.d -o CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -c /<>/external/vcflib/split.cpp [ 48%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o -MF CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o.d -o CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o -c /<>/external/vcflib/tabixpp/tabix.cpp [ 50%] Building C object CMakeFiles/tvc.dir/external/vcflib/tabixpp/index.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/tabixpp/index.c.o -MF CMakeFiles/tvc.dir/external/vcflib/tabixpp/index.c.o.d -o CMakeFiles/tvc.dir/external/vcflib/tabixpp/index.c.o -c /<>/external/vcflib/tabixpp/index.c /<>/external/vcflib/tabixpp/index.c: In function ‘ti_index_core’: /<>/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 336 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ [ 51%] Building C object CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o -MF CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o.d -o CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o -c /<>/external/vcflib/tabixpp/bgzf.c /<>/external/vcflib/tabixpp/bgzf.c: In function ‘_bgzf_check_EOF’: /<>/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 678 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o -MF CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o.d -o CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o -c /<>/external/freebayes/src/AlleleParser.cpp [ 54%] Building CXX object CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o -MF CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o.d -o CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o -c /<>/BaseCaller/PIDloop.cpp [ 56%] Building CXX object CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o -MF CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o.d -o CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o -c /<>/BaseCaller/DPTreephaser.cpp [ 57%] Building CXX object CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o -MF CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o.d -o CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o -c /<>/Calibration/LinearCalibrationModel.cpp [ 59%] Building CXX object CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -MF CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o.d -o CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -c /<>/Calibration/FlowAlignment.cpp [ 60%] Building CXX object CMakeFiles/tvc.dir/Util/OptArgs.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/Util/OptArgs.cpp.o -MF CMakeFiles/tvc.dir/Util/OptArgs.cpp.o.d -o CMakeFiles/tvc.dir/Util/OptArgs.cpp.o -c /<>/Util/OptArgs.cpp [ 62%] Building CXX object CMakeFiles/tvc.dir/realignment/Realigner.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/realignment/Realigner.cpp.o -MF CMakeFiles/tvc.dir/realignment/Realigner.cpp.o.d -o CMakeFiles/tvc.dir/realignment/Realigner.cpp.o -c /<>/realignment/Realigner.cpp [ 64%] Building C object CMakeFiles/tvc.dir/file-io/ion_util.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/file-io/ion_util.c.o -MF CMakeFiles/tvc.dir/file-io/ion_util.c.o.d -o CMakeFiles/tvc.dir/file-io/ion_util.c.o -c /<>/file-io/ion_util.c [ 65%] Building C object CMakeFiles/tvc.dir/file-io/ion_error.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/file-io/ion_error.c.o -MF CMakeFiles/tvc.dir/file-io/ion_error.c.o.d -o CMakeFiles/tvc.dir/file-io/ion_error.c.o -c /<>/file-io/ion_error.c [ 67%] Building CXX object CMakeFiles/tvc.dir/IonVersion.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/IonVersion.cpp.o -MF CMakeFiles/tvc.dir/IonVersion.cpp.o.d -o CMakeFiles/tvc.dir/IonVersion.cpp.o -c /<>/obj-i686-linux-gnu/IonVersion.cpp [ 68%] Linking CXX executable tvc /usr/bin/cmake -E cmake_link_script CMakeFiles/tvc.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o CMakeFiles/tvc.dir/VariantCaller/BAMWalkerEngine.cpp.o CMakeFiles/tvc.dir/VariantCaller/OrderedBAMWriter.cpp.o CMakeFiles/tvc.dir/VariantCaller/SampleManager.cpp.o CMakeFiles/tvc.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/InputStructures.cpp.o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SkewGenerator.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o CMakeFiles/tvc.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvc.dir/external/vcflib/split.cpp.o CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvc.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvc.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvc.dir/external/freebayes/src/AlleleParser.cpp.o CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o CMakeFiles/tvc.dir/Util/OptArgs.cpp.o CMakeFiles/tvc.dir/realignment/Realigner.cpp.o "CMakeFiles/tvc.dir/file-io/ion_util.c.o" "CMakeFiles/tvc.dir/file-io/ion_error.c.o" CMakeFiles/tvc.dir/IonVersion.cpp.o -o tvc -lbamtools -lz -lpthread -lblas -llapack -larmadillo -ljsoncpp -lsmithwaterman -ldisorder make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 68%] Built target tvc make -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/CMakeFiles/tvcassembly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 70%] Building CXX object CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o -MF CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o.d -o CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o -c /<>/VariantCaller/IndelAssembly/IndelAssembly.cpp [ 71%] Building CXX object CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o -MF CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o.d -o CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o -c /<>/VariantCaller/TargetsManager.cpp [ 73%] Building CXX object CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o -MF CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o.d -o CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o -c /<>/VariantCaller/SampleManager.cpp [ 75%] Building CXX object CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o -MF CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o.d -o CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o -c /<>/Util/OptArgs.cpp [ 76%] Building CXX object CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o -MF CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o.d -o CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o -c /<>/Util/Utils.cpp [ 78%] Building CXX object CMakeFiles/tvcassembly.dir/IonVersion.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/IonVersion.cpp.o -MF CMakeFiles/tvcassembly.dir/IonVersion.cpp.o.d -o CMakeFiles/tvcassembly.dir/IonVersion.cpp.o -c /<>/obj-i686-linux-gnu/IonVersion.cpp [ 79%] Linking CXX executable tvcassembly /usr/bin/cmake -E cmake_link_script CMakeFiles/tvcassembly.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcassembly.dir/VariantCaller/SampleManager.cpp.o CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o CMakeFiles/tvcassembly.dir/Util/Utils.cpp.o CMakeFiles/tvcassembly.dir/IonVersion.cpp.o -o tvcassembly -lbamtools -lz -lpthread -ljsoncpp make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 79%] Built target tvcassembly make -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/CMakeFiles/tvcutils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 81%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -c /<>/VariantCaller/tvcutils/tvcutils.cpp [ 82%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o -c /<>/VariantCaller/tvcutils/prepare_hotspots.cpp [ 84%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o -c /<>/VariantCaller/tvcutils/validate_bed.cpp [ 85%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o -c /<>/VariantCaller/tvcutils/unify_vcf.cpp In file included from /<>/VariantCaller/tvcutils/viterbi.h:64, from /<>/VariantCaller/tvcutils/unify_vcf.cpp:19: /<>/VariantCaller/tvcutils/viterbi.hpp: In instantiation of ‘void markov_chain::optimal_path() [with T = unsigned int]’: /<>/VariantCaller/tvcutils/viterbi.hpp:64:3: required from ‘void markov_chain::initialize(_ForwardIterator, _ForwardIterator, T, T) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; T = unsigned int]’ /<>/VariantCaller/tvcutils/viterbi.hpp:38:13: required from ‘markov_chain::markov_chain(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; T = unsigned int]’ /<>/VariantCaller/tvcutils/unify_vcf.cpp:550:69: required from here /<>/VariantCaller/tvcutils/viterbi.hpp:114:13: warning: ignoring return value of ‘constexpr bool std::operator!=(const reverse_iterator<_Iterator>&, const reverse_iterator<_Iterator>&) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >]’, declared with attribute ‘nodiscard’ [-Wunused-result] 114 | for (; it != rend(), vit != values.rend(); it++, vit++) { | ~~~^~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/12/string:47, from /<>/VariantCaller/tvcutils/unify_vcf.cpp:7: /usr/i686-linux-gnu/include/c++/12/bits/stl_iterator.h:458:5: note: declared here 458 | operator!=(const reverse_iterator<_Iterator>& __x, | ^~~~~~~~ [ 87%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o -c /<>/VariantCaller/TargetsManager.cpp [ 89%] Building CXX object CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o -MF CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o.d -o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o -c /<>/Util/OptArgs.cpp [ 90%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -c /<>/external/vcflib/Variant.cpp [ 92%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o -c /<>/external/vcflib/split.cpp [ 93%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o -c /<>/external/vcflib/tabixpp/tabix.cpp [ 95%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -c /<>/external/vcflib/tabixpp/index.c /<>/external/vcflib/tabixpp/index.c: In function ‘ti_index_core’: /<>/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 336 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ [ 96%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o /usr/bin/i686-linux-gnu-gcc -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o -c /<>/external/vcflib/tabixpp/bgzf.c /<>/external/vcflib/tabixpp/bgzf.c: In function ‘_bgzf_check_EOF’: /<>/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 678 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object CMakeFiles/tvcutils.dir/IonVersion.cpp.o /usr/bin/i686-linux-gnu-g++ -DALIGNSTATS_IGNORE -I/<>/external/vcflib -I/<>/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/<>/VariantCaller -I/<>/VariantCaller/FlowDistEval -I/<>/VariantCaller/EnsembleEval -I/<>/VariantCaller/Bookkeeping -I/<>/VariantCaller/Reads -I/<>/VariantCaller/Splice -I/<>/VariantCaller/Filter -I/<>/realignment -I/<>/file-io -I/<>/BaseCaller -I/<>/Calibration -I/<>/Util -I/<> -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/IonVersion.cpp.o -MF CMakeFiles/tvcutils.dir/IonVersion.cpp.o.d -o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -c /<>/obj-i686-linux-gnu/IonVersion.cpp [100%] Linking CXX executable tvcutils /usr/bin/cmake -E cmake_link_script CMakeFiles/tvcutils.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -o tvcutils -lbamtools -lz -ljsoncpp -lsmithwaterman -ldisorder make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [100%] Built target tvcutils make[2]: Leaving directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-i686-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/tvc/ -a cd obj-i686-linux-gnu && make -j1 install DESTDIR=/<>/tvc-5.0.3\+git20151221.80e144e\+dfsg/debian/tvc AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tvc/usr/bin/tvc -- Installing: /<>/debian/tvc/usr/bin/tvcassembly -- Installing: /<>/debian/tvc/usr/bin/tvcutils -- Installing: /<>/debian/tvc/usr/bin/variant_caller_pipeline.py -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json -- Installing: /<>/debian/tvc/usr/share/TVC/sse -- Installing: /<>/debian/tvc/usr/share/TVC/sse/motifset.txt -- Installing: /<>/debian/tvc/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt -- Installing: /<>/debian/tvc/usr/share/TVC/examples -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1 -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_original.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test_merged_plain.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bed -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/test.bam -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.fasta -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/reference.dict -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected/small_variants.vcf -- Installing: /<>/debian/tvc/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf make[1]: Leaving directory '/<>/obj-i686-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tvc/usr/bin/tvc debian/tvc/usr/bin/tvcutils were not linked against libdisorder.so.0 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'tvc' in '../tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb'. dpkg-deb: building package 'tvc-dbgsym' in '../tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb'. dpkg-genbuildinfo --build=any -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.buildinfo dpkg-genchanges --build=any -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-06-04T00:19:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.changes: -------------------------------------------------- Format: 1.8 Date: Mon, 05 Sep 2022 17:20:03 +0000 Source: tvc Binary: tvc tvc-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 5.0.3+git20151221.80e144e+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: tvc - genetic variant caller for Ion Torrent sequencing platforms Changes: tvc (5.0.3+git20151221.80e144e+dfsg-5) unstable; urgency=medium . * Team upload. * Add autopkgtest * Standards-Version: 4.6.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. Checksums-Sha1: 8f4d0ca50f4a5c4c20a524396edb7ba9e48de476 11332592 tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb c0e0b2fcd660db6a3dc3b521d98ea262af8c3dba 7372 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.buildinfo 5dea5cf475d5dc913e0c35510e5c50974f3c327d 1115216 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb Checksums-Sha256: 14e73565c275bbba64a2473a56f87567fc80fac131108384436d7f39b2a07d48 11332592 tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb 589fefdcb3649ddcafa4c34e582ab5176f29de3f3c11b66c6c51a0747686b375 7372 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.buildinfo 601d0f72acb16455cc5ad10d2d4e263d3a3b28e83cf1f1c3e0c7735048bfd3f3 1115216 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb Files: 1b18445e12593dee43e715222fa6e39b 11332592 debug optional tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb b15138b72a3a9584e7bf8651fa43e83b 7372 science optional tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.buildinfo e5216c7e2e38ede044b044ca1870edb1 1115216 science optional tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tvc Binary: tvc tvc-dbgsym Architecture: i386 Version: 5.0.3+git20151221.80e144e+dfsg-5 Checksums-Md5: 1b18445e12593dee43e715222fa6e39b 11332592 tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb e5216c7e2e38ede044b044ca1870edb1 1115216 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb Checksums-Sha1: 8f4d0ca50f4a5c4c20a524396edb7ba9e48de476 11332592 tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb 5dea5cf475d5dc913e0c35510e5c50974f3c327d 1115216 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb Checksums-Sha256: 14e73565c275bbba64a2473a56f87567fc80fac131108384436d7f39b2a07d48 11332592 tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb 601d0f72acb16455cc5ad10d2d4e263d3a3b28e83cf1f1c3e0c7735048bfd3f3 1115216 tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sun, 04 Jun 2023 00:19:54 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 12.4), base-passwd (= 3.6.1), bash (= 5.2.15-2+b2), binutils (= 2.40-2), binutils-aarch64-linux-gnu (= 2.40-2), binutils-common (= 2.40-2), bsdextrautils (= 2.38.1-5+b1), bsdutils (= 1:2.38.1-5+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), cmake (= 3.25.1-1), cmake-data (= 3.25.1-1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-12 (= 12.2.0-14), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-12), gettext-base (= 0.21-12), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1), hdf5-helpers (= 1.10.8+repack1-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libaec-dev (= 1.0.6-1+b1), libaec0 (= 1.0.6-1+b1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1), libarmadillo-dev (= 1:11.4.2+dfsg-1), libarmadillo11 (= 1:11.4.2+dfsg-1), libarpack2 (= 3.8.0-3), libarpack2-dev (= 3.8.0-3), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbamtools-dev (= 2.5.2+dfsg-4), libbamtools2.5.2 (= 2.5.2+dfsg-4), libbinutils (= 2.40-2), libblas-dev (= 3.11.0-2), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-5+b1), libboost-math-dev (= 1.74.0.3), libboost-math1.74-dev (= 1.74.0+ds1-21), libboost-math1.74.0 (= 1.74.0+ds1-21), libboost1.74-dev (= 1.74.0+ds1-21), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-9), libc-dev-bin (= 2.36-9), libc6 (= 2.36-9), libc6-dev (= 2.36-9), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 12.2.0-14), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libcurl4 (= 7.88.1-10), libcurl4-openssl-dev (= 7.88.1-10), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4+b1), libdisorder0 (= 0.0.2+git20130809.8062ee1-4+b1), libdpkg-perl (= 1.21.22), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-14), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.9-2), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-2), libhdf5-103-1 (= 1.10.8+repack1-1), libhdf5-cpp-103-1 (= 1.10.8+repack1-1), libhdf5-dev (= 1.10.8+repack1-1), libhdf5-fortran-102 (= 1.10.8+repack1-1), libhdf5-hl-100 (= 1.10.8+repack1-1), libhdf5-hl-cpp-100 (= 1.10.8+repack1-1), libhdf5-hl-fortran-100 (= 1.10.8+repack1-1), libhogweed6 (= 3.8.1-2), libhwasan0 (= 12.2.0-14), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libjpeg-dev (= 1:2.1.5-2), libjpeg62-turbo (= 1:2.1.5-2), libjpeg62-turbo-dev (= 1:2.1.5-2), libjsoncpp-dev (= 1.9.5-4), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 12.2.0-14), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-5+b1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4-4), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.53.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 12.2.0-14), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-11), libsasl2-modules-db (= 2.1.28+dfsg-11), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.4-1+b6), libsmartcols1 (= 2.38.1-5+b1), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12+b1), libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b1), libssh2-1 (= 1.10.0-3+b1), libssl-dev (= 3.0.9-1), libssl3 (= 3.0.9-1), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsuperlu-dev (= 5.3.0+dfsg1-2+b1), libsuperlu5 (= 5.3.0+dfsg1-2+b1), libsystemd0 (= 252.6-1), libsz2 (= 1.0.6-1+b1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-4), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5+b1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.2), libzstd1 (= 1.5.4+dfsg2-5), linux-libc-dev (= 6.1.27-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-2), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-4), ncurses-bin (= 6.4-4), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-4), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.38.1-5+b1), util-linux-extra (= 2.38.1-5+b1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1662398403" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_i386.deb ---------------------------------------------------- new Debian package, version 2.0. size 11332592 bytes: control archive=700 bytes. 487 bytes, 12 lines control 396 bytes, 4 lines md5sums Package: tvc-dbgsym Source: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 11372 Depends: tvc (= 5.0.3+git20151221.80e144e+dfsg-5) Section: debug Priority: optional Description: debug symbols for tvc Build-Ids: 716c66515be1e4882e91ee23f6f4384825d77a8e 8b21cdd1a1a6f25216c490399ad4d64e1762e7f6 8f9f7e82b7d8f72467507d36c936d0def149760c drwxr-xr-x root/root 0 2022-09-05 17:20 ./ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/71/ -rw-r--r-- root/root 7904264 2022-09-05 17:20 ./usr/lib/debug/.build-id/71/6c66515be1e4882e91ee23f6f4384825d77a8e.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/8b/ -rw-r--r-- root/root 2411212 2022-09-05 17:20 ./usr/lib/debug/.build-id/8b/21cdd1a1a6f25216c490399ad4d64e1762e7f6.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.build-id/8f/ -rw-r--r-- root/root 842024 2022-09-05 17:20 ./usr/lib/debug/.build-id/8f/9f7e82b7d8f72467507d36c936d0def149760c.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 470780 2022-09-05 17:20 ./usr/lib/debug/.dwz/i386-linux-gnu/tvc.debug drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-09-05 17:20 ./usr/share/doc/tvc-dbgsym -> tvc tvc_5.0.3+git20151221.80e144e+dfsg-5_i386.deb --------------------------------------------- new Debian package, version 2.0. size 1115216 bytes: control archive=1676 bytes. 993 bytes, 16 lines control 2459 bytes, 28 lines md5sums Package: tvc Version: 5.0.3+git20151221.80e144e+dfsg-5 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 3451 Depends: libarmadillo11 (>= 1:11.4.2+dfsg), libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libgcc-s1 (>= 3.0), libjsoncpp25 (>= 1.9.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3 Section: science Priority: optional Homepage: http://ioncommunity.thermofisher.com Description: genetic variant caller for Ion Torrent sequencing platforms Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions. drwxr-xr-x root/root 0 2022-09-05 17:20 ./ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/bin/ -rwxr-xr-x root/root 1208232 2022-09-05 17:20 ./usr/bin/tvc -rwxr-xr-x root/root 227548 2022-09-05 17:20 ./usr/bin/tvcassembly -rwxr-xr-x root/root 649764 2022-09-05 17:20 ./usr/bin/tvcutils -rwxr-xr-x root/root 12985 2022-09-05 17:20 ./usr/bin/variant_caller_pipeline.py drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/example1/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/examples/example1/expected/ -rw-r--r-- root/root 6876 2015-12-21 20:38 ./usr/share/TVC/examples/example1/expected/TSVC_variants.vcf -rw-r--r-- root/root 6479 2015-12-21 20:38 ./usr/share/TVC/examples/example1/expected/small_variants.vcf -rw-r--r-- root/root 108 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.dict -rw-r--r-- root/root 3400 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.fasta -rw-r--r-- root/root 22 2015-12-21 20:38 ./usr/share/TVC/examples/example1/reference.fasta.fai -rw-r--r-- root/root 225904 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bam -rw-r--r-- root/root 96 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bam.bai -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test.bed -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_merged_plain.bed -rw-r--r-- root/root 13 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_original.bed -rw-r--r-- root/root 70 2015-12-21 20:38 ./usr/share/TVC/examples/example1/test_unmerged_detail.bed drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/pluginMedia/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/pluginMedia/parameter_sets/ -rw-r--r-- root/root 2809 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2926 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2826 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json -rw-r--r-- root/root 2918 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json -rw-r--r-- root/root 3062 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2628 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json -rw-r--r-- root/root 2757 2015-12-21 20:38 ./usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/TVC/sse/ -rw-r--r-- root/root 683778 2015-12-21 20:38 ./usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt -rw-r--r-- root/root 451754 2015-12-21 20:38 ./usr/share/TVC/sse/motifset.txt drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/doc/tvc/ -rw-r--r-- root/root 1078 2022-09-05 16:49 ./usr/share/doc/tvc/README.Debian -rw-r--r-- root/root 657 2022-09-05 17:20 ./usr/share/doc/tvc/changelog.Debian.gz -rw-r--r-- root/root 2939 2022-09-05 17:19 ./usr/share/doc/tvc/copyright drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-09-05 17:20 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 135 2022-09-05 16:49 ./usr/share/lintian/overrides/tvc lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1392 B] Get:5 copy:/<>/apt_archive ./ Packages [1469 B] Fetched 3476 B in 0s (189 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 53.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.0.9-1 [1382 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20230311 [153 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.65-1 [31.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.5-5 [45.9 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.40.1-2 [786 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.63-1+b1 [42.8 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b1 [121 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.55-1 [220 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b1 [35.3 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-2+b1 [24.2 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.35-1 [128 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b1 [34.0 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b1 [98.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b1 [24.2 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b1 [28.3 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.68-1 [186 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.13-5 [38.9 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b3 [167 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.26-2+b1 [12.4 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b1 [17.1 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.2 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.634-1+b2 [42.4 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.003+ds-1 [95.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.003+ds-1 [97.1 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.33-1 [57.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.28-1 [28.2 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b1 [24.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b1 [8396 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [13.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b2 [196 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b1 [72.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2 [19.9 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.16-1 [116 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [32.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.10-5 [58.0 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (43.1 MB/s) Selecting previously unselected package netbase. (Reading database ... 37531 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.9-1_arm64.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_arm64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.5-5_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-5) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../006-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-1.1_arm64.deb ... Unpacking gpgconf (2.2.40-1.1) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.40.1-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.40.1-2) ... Selecting previously unselected package gpg. Preparing to unpack .../009-gpg_2.2.40-1.1_arm64.deb ... Unpacking gpg (2.2.40-1.1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../010-iso-codes_4.15.0-1_all.deb ... Unpacking iso-codes (4.15.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../011-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../012-libapt-pkg-perl_0.1.40+b2_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40+b2) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2+b1_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-2+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b1_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.63-1+b1_arm64.deb ... Unpacking libvariable-magic-perl (0.63-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b1_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.64-2+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../025-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package libregexp-ipv6-perl. Preparing to unpack .../026-libregexp-ipv6-perl_0.03-3_all.deb ... Unpacking libregexp-ipv6-perl (0.03-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../027-liburi-perl_5.17-1_all.deb ... Unpacking liburi-perl (5.17-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../028-libhtml-parser-perl_3.81-1_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.81-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../029-libcgi-pm-perl_4.55-1_all.deb ... Unpacking libcgi-pm-perl (4.55-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../030-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../031-libclass-method-modifiers-perl_2.14-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.14-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../032-libclass-xsaccessor-perl_1.19-4+b1_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b1) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../033-libclone-perl_0.46-1_arm64.deb ... Unpacking libclone-perl:arm64 (0.46-1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../034-libconfig-tiny-perl_2.28-2_all.deb ... Unpacking libconfig-tiny-perl (2.28-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../035-libparams-util-perl_1.102-2+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../036-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../037-libdata-optlist-perl_0.113-1_all.deb ... Unpacking libdata-optlist-perl (0.113-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../038-libsub-exporter-perl_0.989-1_all.deb ... Unpacking libsub-exporter-perl (0.989-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../039-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../040-libcpanel-json-xs-perl_4.35-1_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.35-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../041-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../042-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../043-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../044-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../045-libdata-dpath-perl_0.58-2_all.deb ... Unpacking libdata-dpath-perl (0.58-2) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../046-libdata-messagepack-perl_1.02-1+b1_arm64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../047-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../048-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../049-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../050-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../051-libnetaddr-ip-perl_4.079+dfsg-2+b1_arm64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../052-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../053-libdata-validate-uri-perl_0.07-2_all.deb ... Unpacking libdata-validate-uri-perl (0.07-2) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../054-libdevel-size-perl_0.83-2+b1_arm64.deb ... Unpacking libdevel-size-perl (0.83-2+b1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../055-libemail-address-xs-perl_1.05-1+b1_arm64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../056-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../057-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../058-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../059-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../060-libhttp-date-perl_6.05-2_all.deb ... Unpacking libhttp-date-perl (6.05-2) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../061-libfile-listing-perl_6.15-1_all.deb ... Unpacking libfile-listing-perl (6.15-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../062-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../063-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../064-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../065-libhttp-message-perl_6.44-1_all.deb ... Unpacking libhttp-message-perl (6.44-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../066-libhtml-form-perl_6.11-1_all.deb ... Unpacking libhtml-form-perl (6.11-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../067-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../068-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../069-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../070-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:arm64. Preparing to unpack .../071-perl-openssl-defaults_7+b1_arm64.deb ... Unpacking perl-openssl-defaults:arm64 (7+b1) ... Selecting previously unselected package libnet-ssleay-perl:arm64. Preparing to unpack .../072-libnet-ssleay-perl_1.92-2+b1_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.92-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../073-libio-socket-ssl-perl_2.081-2_all.deb ... Unpacking libio-socket-ssl-perl (2.081-2) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../074-libnet-http-perl_6.22-1_all.deb ... Unpacking libnet-http-perl (6.22-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../075-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../076-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../077-libwww-perl_6.68-1_all.deb ... Unpacking libwww-perl (6.68-1) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../078-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../079-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../080-libio-interactive-perl_1.023-2_all.deb ... Unpacking libio-interactive-perl (1.023-2) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../081-libipc-run3-perl_0.048-3_all.deb ... Unpacking libipc-run3-perl (0.048-3) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../082-libjson-maybexs-perl_1.004004-1_all.deb ... Unpacking libjson-maybexs-perl (1.004004-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../083-liblist-compare-perl_0.55-2_all.deb ... Unpacking liblist-compare-perl (0.55-2) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../084-liblist-someutils-perl_0.59-1_all.deb ... Unpacking liblist-someutils-perl (0.59-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../085-liblist-utilsby-perl_0.12-2_all.deb ... Unpacking liblist-utilsby-perl (0.12-2) ... Selecting previously unselected package liblz1:arm64. Preparing to unpack .../086-liblz1_1.13-5_arm64.deb ... Unpacking liblz1:arm64 (1.13-5) ... Selecting previously unselected package liblzo2-2:arm64. Preparing to unpack .../087-liblzo2-2_2.10-2_arm64.deb ... Unpacking liblzo2-2:arm64 (2.10-2) ... Selecting previously unselected package libmarkdown2:arm64. Preparing to unpack .../088-libmarkdown2_2.2.7-2_arm64.deb ... Unpacking libmarkdown2:arm64 (2.2.7-2) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../089-libmldbm-perl_2.05-4_all.deb ... Unpacking libmldbm-perl (2.05-4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../090-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../091-libsub-quote-perl_2.006008-1_all.deb ... Unpacking libsub-quote-perl (2.006008-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../092-libmoo-perl_2.005005-1_all.deb ... Unpacking libmoo-perl (2.005005-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../093-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../094-libmoox-aliases-perl_0.001006-2_all.deb ... Unpacking libmoox-aliases-perl (0.001006-2) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../095-libmouse-perl_2.5.10-1+b3_arm64.deb ... Unpacking libmouse-perl (2.5.10-1+b3) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../096-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../097-libsub-identify-perl_0.14-3_arm64.deb ... Unpacking libsub-identify-perl (0.14-3) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../098-libsub-name-perl_0.26-2+b1_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.26-2+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../099-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../100-libpath-tiny-perl_0.144-1_all.deb ... Unpacking libpath-tiny-perl (0.144-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../101-libperlio-gzip-perl_0.20-1+b1_arm64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b1) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../102-libperlio-utf8-strict-perl_0.010-1_arm64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1) ... Selecting previously unselected package libproc-processtable-perl:arm64. Preparing to unpack .../103-libproc-processtable-perl_0.634-1+b2_arm64.deb ... Unpacking libproc-processtable-perl:arm64 (0.634-1+b2) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../104-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../105-libsereal-decoder-perl_5.003+ds-1_arm64.deb ... Unpacking libsereal-decoder-perl (5.003+ds-1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../106-libsereal-encoder-perl_5.003+ds-1_arm64.deb ... Unpacking libsereal-encoder-perl (5.003+ds-1) ... Selecting previously unselected package libsort-versions-perl. Preparing to unpack .../107-libsort-versions-perl_1.62-3_all.deb ... Unpacking libsort-versions-perl (1.62-3) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../108-libxs-parse-keyword-perl_0.33-1_arm64.deb ... Unpacking libxs-parse-keyword-perl (0.33-1) ... Selecting previously unselected package libsyntax-keyword-try-perl. Preparing to unpack .../109-libsyntax-keyword-try-perl_0.28-1_arm64.deb ... Unpacking libsyntax-keyword-try-perl (0.28-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../110-libterm-readkey-perl_2.38-2+b1_arm64.deb ... Unpacking libterm-readkey-perl (2.38-2+b1) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../111-libtext-levenshteinxs-perl_0.03-5+b1_arm64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b1) ... Selecting previously unselected package libtext-markdown-discount-perl. Preparing to unpack .../112-libtext-markdown-discount-perl_0.16-1_arm64.deb ... Unpacking libtext-markdown-discount-perl (0.16-1) ... Selecting previously unselected package libtext-xslate-perl:arm64. Preparing to unpack .../113-libtext-xslate-perl_3.5.9-1+b2_arm64.deb ... Unpacking libtext-xslate-perl:arm64 (3.5.9-1+b2) ... Selecting previously unselected package libtime-duration-perl. Preparing to unpack .../114-libtime-duration-perl_1.21-2_all.deb ... Unpacking libtime-duration-perl (1.21-2) ... Selecting previously unselected package libtime-moment-perl. Preparing to unpack .../115-libtime-moment-perl_0.44-2+b1_arm64.deb ... Unpacking libtime-moment-perl (0.44-2+b1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../116-libunicode-utf8-perl_0.62-2_arm64.deb ... Unpacking libunicode-utf8-perl (0.62-2) ... Selecting previously unselected package libwww-mechanize-perl. Preparing to unpack .../117-libwww-mechanize-perl_2.16-1_all.deb ... Unpacking libwww-mechanize-perl (2.16-1) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../118-libyaml-0-2_0.2.5-1_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../119-libyaml-libyaml-perl_0.86+ds-1_arm64.deb ... Unpacking libyaml-libyaml-perl (0.86+ds-1) ... Selecting previously unselected package plzip. Preparing to unpack .../120-plzip_1.10-5_arm64.deb ... Unpacking plzip (1.10-5) ... Selecting previously unselected package lzop. Preparing to unpack .../121-lzop_1.04-2_arm64.deb ... Unpacking lzop (1.04-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../122-patchutils_0.4.2-1_arm64.deb ... Unpacking patchutils (0.4.2-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../123-t1utils_1.41-4_arm64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package unzip. Preparing to unpack .../124-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package lintian. Preparing to unpack .../125-lintian_2.116.3_all.deb ... Unpacking lintian (2.116.3) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:i386. Preparing to unpack .../126-sbuild-build-depends-lintian-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:arm64 (1.13-5) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b1) ... Setting up plzip (1.10-5) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:arm64 (4.35-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.40.1-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl (5.003+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.33-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:arm64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.28-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.9-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.003+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.68-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.16-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 140188 Build-Time: 940 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 80 Job: tvc_5.0.3+git20151221.80e144e+dfsg-5 Lintian: pass Machine Architecture: arm64 Package: tvc Package-Time: 1061 Source-Version: 5.0.3+git20151221.80e144e+dfsg-5 Space: 140188 Status: successful Version: 5.0.3+git20151221.80e144e+dfsg-5 -------------------------------------------------------------------------------- Finished at 2023-06-04T00:19:56Z Build needed 00:17:41, 140188k disk space