sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | vcftools 0.1.16-1 (mips) Fri, 08 Feb 2019 22:11:06 +0000 | +==============================================================================+ Package: vcftools Version: 0.1.16-1 Source Version: 0.1.16-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4c321b51-7452-4d76-a55a-72b06674c098' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [243 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-0813.48.pdiff [6912 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-1410.57.pdiff [17.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-2019.43.pdiff [24.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-0813.48.pdiff [34.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-1410.57.pdiff [19.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-2019.43.pdiff [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-08-2019.43.pdiff [24.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-08-2019.43.pdiff [34.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mips Packages [8041 kB] Fetched 8477 kB in 2s (5069 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libbinutils libcc1-0 libgcc-8-dev libgcc1 libgomp1 libitm1 liblsan0 libmpx2 libquadmath0 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 38.0 MB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 8.2.0-19 [46.5 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 8.2.0-19 [75.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 8.2.0-19 [27.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 8.2.0-19 [8888 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5 amd64 8.2.0-19 [360 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 8.2.0-19 [130 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 8.2.0-19 [283 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 8.2.0-19 [119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libmpx2 amd64 8.2.0-19 [11.4 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 8.2.0-19 [133 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-base amd64 8.2.0-19 [189 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 8.2.0-19 [392 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8 amd64 8.2.0-19 [9700 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev amd64 8.2.0-19 [1532 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev amd64 8.2.0-19 [2295 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8 amd64 8.2.0-19 [9395 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8 amd64 8.2.0-19 [8870 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1 amd64 1:8.2.0-19 [40.7 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.31.1-12 [479 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.31.1-12 [2072 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.31.1-12 [56.4 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-12 [1825 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.0 MB in 0s (79.1 MB/s) (Reading database ... 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Setting up libgcc-8-dev:amd64 (8.2.0-19) ... Setting up binutils-x86-64-linux-gnu (2.31.1-12) ... Setting up libstdc++-8-dev:amd64 (8.2.0-19) ... Setting up binutils (2.31.1-12) ... Setting up gcc-8 (8.2.0-19) ... Setting up g++-8 (8.2.0-19) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vcftools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vcftools.git Please use: git clone https://salsa.debian.org/med-team/vcftools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 260 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main vcftools 0.1.16-1 (dsc) [2065 B] Get:2 http://debian.oregonstate.edu/debian unstable/main vcftools 0.1.16-1 (tar) [245 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main vcftools 0.1.16-1 (diff) [13.7 kB] Fetched 260 kB in 0s (5385 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vcftools-YHNWel/vcftools-0.1.16' with '<>' I: NOTICE: Log filtering will replace 'build/vcftools-YHNWel' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-dZPy0z/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-dZPy0z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dZPy0z/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-dZPy0z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dZPy0z/apt_archive ./ Sources [360 B] Get:5 copy:/<>/resolver-dZPy0z/apt_archive ./ Packages [451 B] Fetched 1768 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips-linux-gnu cpp-8-mips-linux-gnu cpp-mips-linux-gnu cross-config crossbuild-essential-mips dpkg-cross file g++-8-mips-linux-gnu g++-mips-linux-gnu gcc-8-cross-base gcc-8-mips-linux-gnu gcc-8-mips-linux-gnu-base gcc-mips-linux-gnu libatomic1-mips-cross libc6-dev-mips-cross libc6-mips-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips-cross libgcc1-mips-cross libgomp1-mips-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips-cross libstdc++6-mips-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mips-linux-gnu gcc-8-doc libstdc++6-8-dbg-mips-cross gcc-8-multilib-mips-linux-gnu libgcc1-dbg-mips-cross libgomp1-dbg-mips-cross libitm1-dbg-mips-cross libatomic1-dbg-mips-cross libasan5-dbg-mips-cross liblsan0-dbg-mips-cross libtsan0-dbg-mips-cross libubsan1-dbg-mips-cross libmpx2-dbg-mips-cross libquadmath0-dbg-mips-cross manpages-dev autoconf automake libtool flex bison gdb-mips-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips-linux-gnu cpp-8-mips-linux-gnu cpp-mips-linux-gnu cross-config crossbuild-essential-mips dpkg-cross file g++-8-mips-linux-gnu g++-mips-linux-gnu gcc-8-cross-base gcc-8-mips-linux-gnu gcc-8-mips-linux-gnu-base gcc-mips-linux-gnu libatomic1-mips-cross libc6-dev-mips-cross libc6-mips-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips-cross libgcc1-mips-cross libgomp1-mips-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips-cross libstdc++6-mips-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips-cross sbuild-build-depends-core-dummy:mips sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 39.9 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dZPy0z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-2 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-2 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-2 [66.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips-linux-gnu amd64 2.31.1-12 [2495 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips-linux-gnu-base amd64 8.2.0-11cross1 [188 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mips-linux-gnu amd64 8.2.0-11cross1 [6282 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips-linux-gnu amd64 4:8.2.0-2 [16.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.2.0-11cross1 [183 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips-cross all 2.28-4cross1 [1212 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips-cross all 1:8.2.0-11cross1 [45.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips-cross all 8.2.0-11cross1 [68.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips-cross all 8.2.0-11cross1 [6624 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mips-cross all 8.2.0-11cross1 [208 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips-linux-gnu amd64 8.2.0-11cross1 [6674 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips-linux-gnu amd64 4:8.2.0-2 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips-cross all 8.2.0-11cross1 [305 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips-cross all 4.19.13-1cross1 [1207 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips-cross all 2.28-4cross1 [2291 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mips-cross all 8.2.0-11cross1 [1512 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mips-linux-gnu amd64 8.2.0-11cross1 [6849 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips-linux-gnu amd64 4:8.2.0-2 [1168 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0133+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips all 12.5 [6540 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.9 MB in 1s (61.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11799 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-2_amd64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-mips-linux-gnu. Preparing to unpack .../06-binutils-mips-linux-gnu_2.31.1-12_amd64.deb ... Unpacking binutils-mips-linux-gnu (2.31.1-12) ... Selecting previously unselected package gcc-8-mips-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-mips-linux-gnu-base_8.2.0-11cross1_amd64.deb ... Unpacking gcc-8-mips-linux-gnu-base:amd64 (8.2.0-11cross1) ... Selecting previously unselected package cpp-8-mips-linux-gnu. Preparing to unpack .../08-cpp-8-mips-linux-gnu_8.2.0-11cross1_amd64.deb ... Unpacking cpp-8-mips-linux-gnu (8.2.0-11cross1) ... Selecting previously unselected package cpp-mips-linux-gnu. Preparing to unpack .../09-cpp-mips-linux-gnu_4%3a8.2.0-2_amd64.deb ... Unpacking cpp-mips-linux-gnu (4:8.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-2_all.deb ... Unpacking cross-config (2.6.15-2) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.2.0-11cross1_all.deb ... Unpacking gcc-8-cross-base (8.2.0-11cross1) ... Selecting previously unselected package libc6-mips-cross. Preparing to unpack .../12-libc6-mips-cross_2.28-4cross1_all.deb ... Unpacking libc6-mips-cross (2.28-4cross1) ... Selecting previously unselected package libgcc1-mips-cross. Preparing to unpack .../13-libgcc1-mips-cross_1%3a8.2.0-11cross1_all.deb ... Unpacking libgcc1-mips-cross (1:8.2.0-11cross1) ... Selecting previously unselected package libgomp1-mips-cross. Preparing to unpack .../14-libgomp1-mips-cross_8.2.0-11cross1_all.deb ... Unpacking libgomp1-mips-cross (8.2.0-11cross1) ... Selecting previously unselected package libatomic1-mips-cross. Preparing to unpack .../15-libatomic1-mips-cross_8.2.0-11cross1_all.deb ... Unpacking libatomic1-mips-cross (8.2.0-11cross1) ... Selecting previously unselected package libgcc-8-dev-mips-cross. Preparing to unpack .../16-libgcc-8-dev-mips-cross_8.2.0-11cross1_all.deb ... Unpacking libgcc-8-dev-mips-cross (8.2.0-11cross1) ... Selecting previously unselected package gcc-8-mips-linux-gnu. Preparing to unpack .../17-gcc-8-mips-linux-gnu_8.2.0-11cross1_amd64.deb ... Unpacking gcc-8-mips-linux-gnu (8.2.0-11cross1) ... Selecting previously unselected package gcc-mips-linux-gnu. Preparing to unpack .../18-gcc-mips-linux-gnu_4%3a8.2.0-2_amd64.deb ... Unpacking gcc-mips-linux-gnu (4:8.2.0-2) ... Selecting previously unselected package libstdc++6-mips-cross. Preparing to unpack .../19-libstdc++6-mips-cross_8.2.0-11cross1_all.deb ... Unpacking libstdc++6-mips-cross (8.2.0-11cross1) ... Selecting previously unselected package linux-libc-dev-mips-cross. Preparing to unpack .../20-linux-libc-dev-mips-cross_4.19.13-1cross1_all.deb ... Unpacking linux-libc-dev-mips-cross (4.19.13-1cross1) ... Selecting previously unselected package libc6-dev-mips-cross. Preparing to unpack .../21-libc6-dev-mips-cross_2.28-4cross1_all.deb ... Unpacking libc6-dev-mips-cross (2.28-4cross1) ... Selecting previously unselected package libstdc++-8-dev-mips-cross. Preparing to unpack .../22-libstdc++-8-dev-mips-cross_8.2.0-11cross1_all.deb ... Unpacking libstdc++-8-dev-mips-cross (8.2.0-11cross1) ... Selecting previously unselected package g++-8-mips-linux-gnu. Preparing to unpack .../23-g++-8-mips-linux-gnu_8.2.0-11cross1_amd64.deb ... Unpacking g++-8-mips-linux-gnu (8.2.0-11cross1) ... Selecting previously unselected package g++-mips-linux-gnu. Preparing to unpack .../24-g++-mips-linux-gnu_4%3a8.2.0-2_amd64.deb ... Unpacking g++-mips-linux-gnu (4:8.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../25-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../26-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../27-libicu63_63.1-6_amd64.deb ... Unpacking libicu63:amd64 (63.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../29-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../30-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../31-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../32-libxml-libxml-perl_2.0133+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0133+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../33-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../34-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../35-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-mips. Preparing to unpack .../40-crossbuild-essential-mips_12.5_all.deb ... Unpacking crossbuild-essential-mips (12.5) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mips. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-core-dummy:mips (0.invalid.0) ... Setting up gcc-8-cross-base (8.2.0-11cross1) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up linux-libc-dev-mips-cross (4.19.13-1cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libfile-which-perl (1.23-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libyaml-perl (1.27-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up sensible-utils (0.0.12) ... Setting up cross-config (2.6.15-2) ... Setting up binutils-mips-linux-gnu (2.31.1-12) ... Setting up libc6-mips-cross (2.28-4cross1) ... Setting up libio-string-perl (1.08-3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-8-mips-linux-gnu-base:amd64 (8.2.0-11cross1) ... Setting up libgomp1-mips-cross (8.2.0-11cross1) ... Setting up libgcc1-mips-cross (1:8.2.0-11cross1) ... Setting up libatomic1-mips-cross (8.2.0-11cross1) ... Setting up file (1:5.35-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libc6-dev-mips-cross (2.28-4cross1) ... Setting up cpp-8-mips-linux-gnu (8.2.0-11cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-mips-cross (8.2.0-11cross1) ... Setting up cpp-mips-linux-gnu (4:8.2.0-2) ... Setting up libgcc-8-dev-mips-cross (8.2.0-11cross1) ... Setting up libstdc++-8-dev-mips-cross (8.2.0-11cross1) ... Setting up libxml-libxml-perl (2.0133+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-mips-linux-gnu (8.2.0-11cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-8-mips-linux-gnu (8.2.0-11cross1) ... Setting up gcc-mips-linux-gnu (4:8.2.0-2) ... Setting up g++-mips-linux-gnu (4:8.2.0-2) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mips (12.5) ... Setting up sbuild-build-depends-core-dummy:mips (0.invalid.0) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-dZPy0z/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-dZPy0z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dZPy0z/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dZPy0z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dZPy0z/apt_archive ./ Sources [480 B] Get:5 copy:/<>/resolver-dZPy0z/apt_archive ./ Packages [570 B] Fetched 2013 B in 0s (0 B/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 836 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-dZPy0z/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [836 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 836 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips. (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-essential-dummy:mips (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), pkg-config, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-vcftools-dummy' in '/<>/resolver-dZPy0z/apt_archive/sbuild-build-depends-vcftools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-vcftools-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-dZPy0z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dZPy0z/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dZPy0z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dZPy0z/apt_archive ./ Sources [649 B] Get:5 copy:/<>/resolver-dZPy0z/apt_archive ./ Packages [731 B] Fetched 2343 B in 0s (0 B/s) Reading package lists... Reading package lists... Install vcftools build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mips gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips libbsd0 libc6:mips libc6-dev:mips libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mips libgcc1:mips libglib2.0-0 libgomp1:mips libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mips libstdc++6:mips libtool libuchardet0 linux-libc-dev:mips m4 man-db pkg-config po-debconf zlib1g:mips zlib1g-dev:mips Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips libc-l10n:mips locales:mips manpages-dev:mips libstdc++-8-doc:mips libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mips libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mips gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips libbsd0 libc6:mips libc6-dev:mips libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mips libgcc1:mips libglib2.0-0 libgomp1:mips libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mips libstdc++6:mips libtool libuchardet0 linux-libc-dev:mips m4 man-db pkg-config po-debconf sbuild-build-depends-vcftools-dummy:mips zlib1g:mips zlib1g-dev:mips 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 MB of archives. After this operation, 80.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dZPy0z/apt_archive ./ sbuild-build-depends-vcftools-dummy 0.invalid.0 [884 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-1 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-9 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.0-1 [12.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-1 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12 [1002 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main mips gcc-8-base mips 8.2.0-19 [189 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mips libgcc1 mips 1:8.2.0-19 [45.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mips libc6 mips 2.28-6 [2384 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mips libatomic1 mips 8.2.0-19 [6636 B] Get:33 http://debian.oregonstate.edu/debian unstable/main mips linux-libc-dev mips 4.19.16-1 [1125 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main mips libc6-dev mips 2.28-6 [2291 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mips libgomp1 mips 8.2.0-19 [70.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mips libgcc-8-dev mips 8.2.0-19 [207 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mips libstdc++6 mips 8.2.0-19 [341 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mips libstdc++-8-dev mips 8.2.0-19 [1513 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mips zlib1g mips 1:1.2.11.dfsg-1 [89.9 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mips zlib1g-dev mips 1:1.2.11.dfsg-1 [212 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.1 MB in 0s (74.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.175-2_amd64.deb ... Unpacking libelf1:amd64 (0.175-2) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-1) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12_all.deb ... Unpacking debhelper (12) ... Selecting previously unselected package gcc-8-base:mips. Preparing to unpack .../27-gcc-8-base_8.2.0-19_mips.deb ... Unpacking gcc-8-base:mips (8.2.0-19) ... Selecting previously unselected package libgcc1:mips. Preparing to unpack .../28-libgcc1_1%3a8.2.0-19_mips.deb ... Unpacking libgcc1:mips (1:8.2.0-19) ... Selecting previously unselected package libc6:mips. Preparing to unpack .../29-libc6_2.28-6_mips.deb ... Unpacking libc6:mips (2.28-6) ... Selecting previously unselected package libatomic1:mips. Preparing to unpack .../30-libatomic1_8.2.0-19_mips.deb ... Unpacking libatomic1:mips (8.2.0-19) ... Selecting previously unselected package linux-libc-dev:mips. Preparing to unpack .../31-linux-libc-dev_4.19.16-1_mips.deb ... Unpacking linux-libc-dev:mips (4.19.16-1) ... Selecting previously unselected package libc6-dev:mips. Preparing to unpack .../32-libc6-dev_2.28-6_mips.deb ... Unpacking libc6-dev:mips (2.28-6) ... Selecting previously unselected package libgomp1:mips. Preparing to unpack .../33-libgomp1_8.2.0-19_mips.deb ... Unpacking libgomp1:mips (8.2.0-19) ... Selecting previously unselected package libgcc-8-dev:mips. Preparing to unpack .../34-libgcc-8-dev_8.2.0-19_mips.deb ... Unpacking libgcc-8-dev:mips (8.2.0-19) ... Selecting previously unselected package libstdc++6:mips. Preparing to unpack .../35-libstdc++6_8.2.0-19_mips.deb ... Unpacking libstdc++6:mips (8.2.0-19) ... Selecting previously unselected package libstdc++-8-dev:mips. Preparing to unpack .../36-libstdc++-8-dev_8.2.0-19_mips.deb ... Unpacking libstdc++-8-dev:mips (8.2.0-19) ... Selecting previously unselected package pkg-config. Preparing to unpack .../37-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package zlib1g:mips. Preparing to unpack .../38-zlib1g_1%3a1.2.11.dfsg-1_mips.deb ... Unpacking zlib1g:mips (1:1.2.11.dfsg-1) ... Selecting previously unselected package zlib1g-dev:mips. Preparing to unpack .../39-zlib1g-dev_1%3a1.2.11.dfsg-1_mips.deb ... Unpacking zlib1g-dev:mips (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-vcftools-dummy:mips. Preparing to unpack .../40-sbuild-build-depends-vcftools-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-vcftools-dummy:mips (0.invalid.0) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:mips (4.19.16-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:amd64 (1.5.1-1) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up gcc-8-base:mips (8.2.0-19) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libtool (2.4.6-9) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up autoconf (2.69-11) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up po-debconf (1.0.21) ... Setting up libc6:mips (2.28-6) ... Setting up libc6-dev:mips (2.28-6) ... Setting up libgcc1:mips (1:8.2.0-19) ... Setting up libgomp1:mips (8.2.0-19) ... Setting up libatomic1:mips (8.2.0-19) ... Setting up dh-autoreconf (19) ... Setting up zlib1g:mips (1:1.2.11.dfsg-1) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up libgcc-8-dev:mips (8.2.0-19) ... Setting up libstdc++6:mips (8.2.0-19) ... Setting up zlib1g-dev:mips (1:1.2.11.dfsg-1) ... Setting up debhelper (12) ... Setting up libstdc++-8-dev:mips (8.2.0-19) ... Setting up sbuild-build-depends-vcftools-dummy:mips (0.invalid.0) ... Processing triggers for libc-bin (2.28-6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-12 dpkg-dev_1.19.4 g++-8_8.2.0-19 gcc-8_8.2.0-19 libc6-dev_2.28-6 libstdc++-8-dev_8.2.0-19 libstdc++-8-dev-mips-cross_8.2.0-11cross1 libstdc++6_8.2.0-19 libstdc++6-mips-cross_8.2.0-11cross1 linux-libc-dev_4.19.16-1 Package versions: adduser_3.118 apt_1.8.0~rc2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_5.0-2 binutils_2.31.1-12 binutils-common_2.31.1-12 binutils-mips-linux-gnu_2.31.1-12 binutils-x86-64-linux-gnu_2.31.1-12 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-19 cpp-8-mips-linux-gnu_8.2.0-11cross1 cpp-mips-linux-gnu_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-mips_12.5 dash_0.5.10.2-5 debconf_1.5.70 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dpkg_1.19.4 dpkg-cross_2.6.15-2 dpkg-dev_1.19.4 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 g++_4:8.2.0-2 g++-8_8.2.0-19 g++-8-mips-linux-gnu_8.2.0-11cross1 g++-mips-linux-gnu_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.2.0-19 gcc-8-base_8.2.0-19 gcc-8-cross-base_8.2.0-11cross1 gcc-8-mips-linux-gnu_8.2.0-11cross1 gcc-8-mips-linux-gnu-base_8.2.0-11cross1 gcc-mips-linux-gnu_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~rc2 libarchive-zip-perl_1.64-1 libasan5_8.2.0-19 libatomic1_8.2.0-19 libatomic1-mips-cross_8.2.0-11cross1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-12 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-6 libc-dev-bin_2.28-6 libc6_2.28-6 libc6-dev_2.28-6 libc6-dev-mips-cross_2.28-4cross1 libc6-mips-cross_2.28-4cross1 libcap-ng0_0.7.9-2 libcc1-0_8.2.0-19 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.3 libdebconfclient0_0.246 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.4 libelf1_0.175-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.2.0-19 libgcc-8-dev-mips-cross_8.2.0-11cross1 libgcc1_1:8.2.0-19 libgcc1-mips-cross_1:8.2.0-11cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.2.0-19 libgomp1-mips-cross_8.2.0-11cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.2.0-19 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.2.0-19 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.2.0-19 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-1 libquadmath0_8.2.0-19 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.44.5-1 libstdc++-8-dev_8.2.0-19 libstdc++-8-dev-mips-cross_8.2.0-11cross1 libstdc++6_8.2.0-19 libstdc++6-mips-cross_8.2.0-11cross1 libsystemd0_240-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-9 libtsan0_8.2.0-19 libubsan1_8.2.0-19 libuchardet0_0.0.6-3 libudev1_240-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0133+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.16-1 linux-libc-dev-mips-cross_4.19.13-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-vcftools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-6 tar_1.30+dfsg-5 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Aug 3 14:41:27 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./vcftools_0.1.16-1.dsc dpkg-source: info: extracting vcftools in /<> dpkg-source: info: unpacking vcftools_0.1.16.orig.tar.gz dpkg-source: info: unpacking vcftools_0.1.16-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying temporary_test_fix.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpage.patch dpkg-source: info: applying 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-4c321b51-7452-4d76-a55a-72b06674c098 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package vcftools dpkg-buildpackage: info: source version 0.1.16-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips fakeroot debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/vcftools.substvars debian/files rm -fr -- debian/vcftools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:16: installing './compile' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' src/cpp/Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-pmdir=/share/perl5 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips-linux-gnu --libexecdir=\${prefix}/lib/mips-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips-linux-gnu --with-pmdir=/share/perl5 configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mips checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips-linux-gnu-strip... mips-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mips-linux-gnu-g++... mips-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mips-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mips-linux-gnu-g++... none checking for mips-linux-gnu-gcc... mips-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether mips-linux-gnu-gcc accepts -g... yes checking for mips-linux-gnu-gcc option to accept ISO C89... none needed checking whether mips-linux-gnu-gcc understands -c and -o together... yes checking dependency style of mips-linux-gnu-gcc... none checking how to run the C preprocessor... mips-linux-gnu-gcc -E checking for perl... /usr/bin/perl checking for mips-linux-gnu-pkg-config... /usr/bin/mips-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ZLIB... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for int8_t... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for gethostbyaddr... yes checking for gethostbyname... yes checking for memset... yes checking for pow... no checking for select... yes checking for socket... yes checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/cpp/Makefile config.status: creating src/perl/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' Making all in cpp make[4]: Entering directory '/<>/src/cpp' mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp mips-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c bgzf.c: In function 'bgzf_check_EOF': bgzf.c:60:34: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp)) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bgzf.c:622:2: note: in expansion of macro '_bgzf_read' _bgzf_read(fp->fp, buf, 28); ^~~~~~~~~~ mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp mips-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c In file included from knetfile.c:46: knetfile.c: In function 'kftp_send_cmd': knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] #define netwrite(fd, ptr, len) write(fd, ptr, len) ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:2: note: in expansion of macro 'netwrite' netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); ^~~~~~~~ knetfile.c: In function 'khttp_connect_file': knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] #define netwrite(fd, ptr, len) write(fd, ptr, len) ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:2: note: in expansion of macro 'netwrite' netwrite(fp->fd, buf, l); ^~~~~~~~ mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp mips-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp mips-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -L/usr/lib/mips-linux-gnu -lz make[4]: Leaving directory '/<>/src/cpp' Making all in perl make[4]: Entering directory '/<>/src/perl' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/src/perl' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/vcftools.substvars rm -fr -- debian/.debhelper/generated/vcftools/ debian/vcftools/ debian/tmp/ dh_auto_install -a install -d /<>/debian/vcftools make -j1 install DESTDIR=/<>/debian/vcftools AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in cpp make[3]: Entering directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' /bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/install -c vcftools '/<>/debian/vcftools/usr/bin' /bin/mkdir -p '/<>/debian/vcftools/usr/share/man/man1' /usr/bin/install -c -m 644 vcftools.1 '/<>/debian/vcftools/usr/share/man/man1' make[4]: Leaving directory '/<>/src/cpp' make[3]: Leaving directory '/<>/src/cpp' Making install in perl make[3]: Entering directory '/<>/src/perl' make[4]: Entering directory '/<>/src/perl' /bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/<>/debian/vcftools/usr/bin' /bin/mkdir -p '/<>/debian/vcftools/usr//share/perl5' /usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/<>/debian/vcftools/usr//share/perl5' make[4]: Leaving directory '/<>/src/perl' make[3]: Leaving directory '/<>/src/perl' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/vcftools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/.debhelper/generated/vcftools for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a install -d debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/README.test debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/tests/run-unit-test debian/vcftools/usr/share/doc/vcftools chown -R 0:0 debian/vcftools/usr/share/doc chmod -R u\+rw,go=rX debian/vcftools/usr/share/doc install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright rm -f debian/vcftools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs src/perl/ChangeLog install -p -m0644 debian/changelog debian/vcftools/usr/share/doc/vcftools/changelog.Debian install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog make[1]: Leaving directory '/<>' rm -f debian/vcftools.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata; cp ./examples/* /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata/; find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \; sed -i 's#examples#testdata#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#I\.\./perl/#I\.\./\.#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#\.\./perl/#/usr/bin/#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; for perlscript in `grep -lR '#!/usr/bin/env \+perl' debian/*/usr/share/doc/vcftools/examples` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installman -a install -p -m0644 ./debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1 install -p -m0644 ./debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 install -p -m0644 ./debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1 install -p -m0644 ./debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 install -p -m0644 ./debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 install -p -m0644 ./debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 install -p -m0644 ./debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 install -p -m0644 ./debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 install -p -m0644 ./debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 install -p -m0644 ./debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 install -p -m0644 ./debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 install -p -m0644 ./debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 install -p -m0644 ./debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 install -p -m0644 ./debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 install -p -m0644 ./debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 install -p -m0644 ./debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 install -p -m0644 ./debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 install -p -m0644 ./debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1 install -p -m0644 ./debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 install -p -m0644 ./debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 install -p -m0644 ./debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 install -p -m0644 ./debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 install -p -m0644 ./debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 install -p -m0644 ./debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 install -p -m0644 ./debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 install -p -m0644 ./src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-validator.1 > debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new debian/vcftools/usr/share/man/man1/vcf-validator.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-tstv.1 > debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new debian/vcftools/usr/share/man/man1/vcf-tstv.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-to-tab.1 > debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new debian/vcftools/usr/share/man/man1/vcf-to-tab.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-subset.1 > debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-stats.1 > debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-stats.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-sort.1 > debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new debian/vcftools/usr/share/man/man1/vcf-sort.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 > debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-query.1 > debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new debian/vcftools/usr/share/man/man1/vcf-query.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-phased-join.1 > debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new debian/vcftools/usr/share/man/man1/vcf-phased-join.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-merge.1 > debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new debian/vcftools/usr/share/man/man1/vcf-merge.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-isec.1 > debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 > debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 > debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 > debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-convert.1 > debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new debian/vcftools/usr/share/man/man1/vcf-convert.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-contrast.1 > debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new debian/vcftools/usr/share/man/man1/vcf-contrast.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-consensus.1 > debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new debian/vcftools/usr/share/man/man1/vcf-consensus.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-concat.1 > debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-compare.1 > debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new debian/vcftools/usr/share/man/man1/vcf-compare.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-annotate.1 > debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new debian/vcftools/usr/share/man/man1/vcf-annotate.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-rsIDs.1 > debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new debian/vcftools/usr/share/man/man1/fill-rsIDs.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-ref-md5.1 > debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new debian/vcftools/usr/share/man/man1/fill-ref-md5.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-fs.1 > debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new debian/vcftools/usr/share/man/man1/fill-fs.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-an-ac.1 > debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new debian/vcftools/usr/share/man/man1/fill-an-ac.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-aa.1 > debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcftools.1 > debian/vcftools/usr/share/man/man1/vcftools.1.dh-new mv debian/vcftools/usr/share/man/man1/vcftools.1.dh-new debian/vcftools/usr/share/man/man1/vcftools.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/vcftools.1 dh_perl -a (grep -a -s -v perl:Depends debian/vcftools.substvars; echo perl:Depends=perl) > debian/vcftools.substvars.new mv debian/vcftools.substvars.new debian/vcftools.substvars rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5 dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/vcftools chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 cd '/<>' dh_fixperms -a find debian/vcftools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/vcftools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/vcftools/usr/share/doc -type f -a -true -a ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/vcftools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/vcftools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c3 mips-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c3/02e2ef66397f65287f4953008508aea6dc56e4.debug chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c3/02e2ef66397f65287f4953008508aea6dc56e4.debug chown 0:0 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c3/02e2ef66397f65287f4953008508aea6dc56e4.debug mips-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools mips-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c3/02e2ef66397f65287f4953008508aea6dc56e4.debug debian/vcftools/usr/bin/vcftools install -d debian/.debhelper/vcftools/dbgsym-root/usr/share/doc ln -s vcftools debian/.debhelper/vcftools/dbgsym-root/usr/share/doc/vcftools-dbgsym dh_makeshlibs -a rm -f debian/vcftools/DEBIAN/shlibs dh_shlibdeps -a install -d debian/vcftools/DEBIAN dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/vcftools.substvars echo misc:Pre-Depends= >> debian/vcftools.substvars install -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/.debhelper/vcftools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=vcftools-dbgsym "-DDepends=vcftools (= \${binary:Version})" "-DDescription=debug symbols for vcftools" -DBuild-Ids=c302e2ef66397f65287f4953008508aea6dc56e4 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools -UMulti-Arch chmod 0644 -- debian/vcftools/DEBIAN/control chown 0:0 -- debian/vcftools/DEBIAN/control dh_md5sums -a cd debian/vcftools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/vcftools/DEBIAN/md5sums chown 0:0 -- debian/vcftools/DEBIAN/md5sums cd debian/.debhelper/vcftools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/vcftools .. dpkg-deb: building package 'vcftools' in '../vcftools_0.1.16-1_mips.deb'. dpkg-deb --build debian/.debhelper/vcftools/dbgsym-root .. dpkg-deb: building package 'vcftools-dbgsym' in '../vcftools-dbgsym_0.1.16-1_mips.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../vcftools_0.1.16-1_mips.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-02-08T22:13:39Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-dZPy0z/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-vcftools-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-dZPy0z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dZPy0z/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dZPy0z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dZPy0z/apt_archive ./ Sources [767 B] Get:5 copy:/<>/resolver-dZPy0z/apt_archive ./ Packages [845 B] Fetched 2575 B in 0s (138 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips t1utils 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 7661 kB of archives. After this operation, 20.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dZPy0z/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.5 [19.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.12-1 [509 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-2 [635 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.12-1 [862 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.6.0 [1193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7661 kB in 0s (43.7 MB/s) Selecting previously unselected package netbase. (Reading database ... 17719 files and directories currently installed.) Preparing to unpack .../00-netbase_5.5_all.deb ... Unpacking netbase (5.5) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.12-1_amd64.deb ... Unpacking gpgconf (2.2.12-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.26.0+fossilbc891ac6b-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.12-1_amd64.deb ... Unpacking gpg (2.2.12-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../09-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../10-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../11-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../12-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../13-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../14-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../15-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../16-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../17-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../18-libssl1.1_1.1.1a-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1a-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../19-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../20-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../21-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../22-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../23-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../24-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../25-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../26-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../27-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../28-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../29-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../30-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../31-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../32-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../33-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../34-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../35-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../36-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../37-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../38-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../39-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. 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Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-ip-perl (1.26-2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libfuture-perl (0.39-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up patchutils (0.3.4-2) ... Setting up liburi-perl (1.76-1) ... Setting up t1utils (1.41-3) ... Setting up libssl1.1:amd64 (1.1.1a-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libio-async-perl (0.72-1) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up diffstat (1.62-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up netbase (5.5) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up gpgconf (2.2.12-1) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up gpg (2.2.12-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.6.0) ... Setting up sbuild-build-depends-lintian-dummy:mips (0.invalid.0) ... Processing triggers for man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ vcftools_0.1.16-1_mips.changes: ------------------------------- Format: 1.8 Date: Fri, 03 Aug 2018 16:20:50 +0200 Source: vcftools Binary: vcftools vcftools-dbgsym Built-For-Profiles: cross nocheck Architecture: mips Version: 0.1.16-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: vcftools - Collection of tools to work with VCF files Closes: 902190 Changes: vcftools (0.1.16-1) unstable; urgency=medium . * New upstream version dealing with CVE-2018-11099, CVE-2018-11129 and CVE-2018-11130 Closes: #902190 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Remove unneeded get-orig-source target * Fix interpreter line in Perl scripts Checksums-Sha1: 1cafb2b346110f4773d34874d1ee9f2cb91938ae 5862932 vcftools-dbgsym_0.1.16-1_mips.deb 6cf17887117a6ab95b83e5ceeda713ce65f086c9 4500 vcftools_0.1.16-1_mips.buildinfo e36c4644e203cedc5634da5657d9fad95cd82e4a 415240 vcftools_0.1.16-1_mips.deb Checksums-Sha256: c592b9f35b369861815123628c5c06c3c8ad0a627295039d12642bd7210d7e97 5862932 vcftools-dbgsym_0.1.16-1_mips.deb 4b555803a4e3308fdee61dbada35818748f7abf5515e0a74919499960ec7b329 4500 vcftools_0.1.16-1_mips.buildinfo 2e5dfa6153f8b7ae7b86fe65a9a5423924a10c04f1a6e43ebc2f6b5b4f94fb25 415240 vcftools_0.1.16-1_mips.deb Files: 6a20d167637c02967665fc4a9ef6952a 5862932 debug optional vcftools-dbgsym_0.1.16-1_mips.deb 71cb27f3a6eaa10996084cb060308677 4500 science optional vcftools_0.1.16-1_mips.buildinfo 1708b1622726ee655305bdb2bd2911c5 415240 science optional vcftools_0.1.16-1_mips.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: vcftools Binary: vcftools Architecture: mips Version: 0.1.16-1 Checksums-Md5: 6a20d167637c02967665fc4a9ef6952a 5862932 vcftools-dbgsym_0.1.16-1_mips.deb 1708b1622726ee655305bdb2bd2911c5 415240 vcftools_0.1.16-1_mips.deb Checksums-Sha1: 1cafb2b346110f4773d34874d1ee9f2cb91938ae 5862932 vcftools-dbgsym_0.1.16-1_mips.deb e36c4644e203cedc5634da5657d9fad95cd82e4a 415240 vcftools_0.1.16-1_mips.deb Checksums-Sha256: c592b9f35b369861815123628c5c06c3c8ad0a627295039d12642bd7210d7e97 5862932 vcftools-dbgsym_0.1.16-1_mips.deb 2e5dfa6153f8b7ae7b86fe65a9a5423924a10c04f1a6e43ebc2f6b5b4f94fb25 415240 vcftools_0.1.16-1_mips.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 08 Feb 2019 22:13:39 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.45), bash (= 5.0-2), binutils (= 2.31.1-12), binutils-common (= 2.31.1-12), binutils-x86-64-linux-gnu (= 2.31.1-12), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.5), bzip2 (= 1.0.6-9), coreutils (= 8.30-1), cpp (= 4:8.2.0-2), cpp-8 (= 8.2.0-19), dash (= 0.5.10.2-5), debconf (= 1.5.70), debhelper (= 12), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.0-1), diffutils (= 1:3.6-1), dpkg (= 1.19.4), dpkg-dev (= 1.19.4), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-2), findutils (= 4.6.0+git+20190105-2), g++ (= 4:8.2.0-2), g++-8 (= 8.2.0-19), gcc (= 4:8.2.0-2), gcc-8 (= 8.2.0-19), gcc-8-base (= 8.2.0-19), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-2), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.52-3+b1), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.2.0-19), libatomic1 (= 8.2.0-19), libattr1 (= 1:2.4.47-2+b2), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-12), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-1), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-6), libc-dev-bin (= 2.28-6), libc6 (= 2.28-6), libc6-dev (= 2.28-6), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.2.0-19), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.3), libdebconfclient0 (= 0.246), libdpkg-perl (= 1.19.4), libelf1 (= 0.175-2), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.0-1), libgcc-8-dev (= 8.2.0-19), libgcc1 (= 1:8.2.0-19), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-2), libgdbm6 (= 1.18.1-2), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.2.0-19), libgpg-error0 (= 1.35-1), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.2.0-19), liblsan0 (= 8.2.0-19), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-2), libmagic1 (= 1:5.35-2), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.2.0-19), libncurses6 (= 6.1+20181013-1), libncursesw6 (= 6.1+20181013-1), libpam-modules 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(= 2.93-6), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1533306050" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ vcftools-dbgsym_0.1.16-1_mips.deb --------------------------------- new Debian package, version 2.0. size 5862932 bytes: control archive=532 bytes. 376 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: vcftools-dbgsym Source: vcftools Version: 0.1.16-1 Auto-Built-Package: debug-symbols Architecture: mips Maintainer: Debian Med Packaging Team Installed-Size: 5866 Depends: vcftools (= 0.1.16-1) Section: debug Priority: optional Description: debug symbols for vcftools Build-Ids: c302e2ef66397f65287f4953008508aea6dc56e4 drwxr-xr-x root/root 0 2018-08-03 14:20 ./ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/lib/debug/.build-id/c3/ -rw-r--r-- root/root 5995980 2018-08-03 14:20 ./usr/lib/debug/.build-id/c3/02e2ef66397f65287f4953008508aea6dc56e4.debug drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/share/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-08-03 14:20 ./usr/share/doc/vcftools-dbgsym -> vcftools vcftools_0.1.16-1_mips.deb -------------------------- new Debian package, version 2.0. size 415240 bytes: control archive=3532 bytes. 683 bytes, 15 lines control 8655 bytes, 114 lines md5sums Package: vcftools Version: 0.1.16-1 Architecture: mips Maintainer: Debian Med Packaging Team Installed-Size: 1552 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), perl Recommends: tabix Section: science Priority: optional Homepage: https://vcftools.github.io/ Description: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. drwxr-xr-x root/root 0 2018-08-03 14:20 ./ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/ drwxr-xr-x root/root 0 2018-08-03 14:20 ./usr/bin/ -rwxr-xr-x root/root 6100 2018-08-03 14:20 ./usr/bin/fill-aa -rwxr-xr-x root/root 1257 2018-08-03 14:20 ./usr/bin/fill-an-ac -rwxr-xr-x root/root 8064 2018-08-03 14:20 ./usr/bin/fill-fs -rwxr-xr-x root/root 6563 2018-08-03 14:20 ./usr/bin/fill-ref-md5 -rwxr-xr-x root/root 51249 2018-08-03 14:20 ./usr/bin/vcf-annotate -rwxr-xr-x root/root 57386 2018-08-03 14:20 ./usr/bin/vcf-compare -rwxr-xr-x root/root 10948 2018-08-03 14:20 ./usr/bin/vcf-concat -rwxr-xr-x root/root 9222 2018-08-03 14:20 ./usr/bin/vcf-consensus -rwxr-xr-x root/root 8793 2018-08-03 14:20 ./usr/bin/vcf-contrast -rwxr-xr-x root/root 6167 2018-08-03 14:20 ./usr/bin/vcf-convert -rwxr-xr-x root/root 2294 2018-08-03 14:20 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 73608 Build-Time: 118 Distribution: unstable Foreign Architectures: mips Host Architecture: mips Install-Time: 20 Job: vcftools_0.1.16-1 Lintian: pass Machine Architecture: amd64 Package: vcftools Package-Time: 153 Source-Version: 0.1.16-1 Space: 73608 Status: successful Version: 0.1.16-1 -------------------------------------------------------------------------------- Finished at 2019-02-08T22:13:39Z Build needed 00:02:33, 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